-
1
-
-
0038021436
-
Assessment of blind predictions of protein-protein interactions: Current status of docking methods
-
Mendez R, Leplae R, De Maria L, Wodak SJ. Assessment of blind predictions of protein-protein interactions: current status of docking methods. Proteins 2003;52:51-67.
-
(2003)
Proteins
, vol.52
, pp. 51-67
-
-
Mendez, R.1
Leplae, R.2
De Maria, L.3
Wodak, S.J.4
-
2
-
-
21644469377
-
Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures
-
Mendez R, Leplae R, Lensink MF, Wodak SJ. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins 2005;60:150-169.
-
(2005)
Proteins
, vol.60
, pp. 150-169
-
-
Mendez, R.1
Leplae, R.2
Lensink, M.F.3
Wodak, S.J.4
-
3
-
-
17344380633
-
ICM-DISCO docking by global energy optimization with fully flexible side-chains
-
Fernandez-Recio J, Totrov M, Abagyan R. ICM-DISCO docking by global energy optimization with fully flexible side-chains. Proteins 2003;52:113-117.
-
(2003)
Proteins
, vol.52
, pp. 113-117
-
-
Fernandez-Recio, J.1
Totrov, M.2
Abagyan, R.3
-
4
-
-
21644447570
-
Improving CAPRI predictions: Optimized desolvation for rigid-body docking
-
Fernandez-Recio J, Abagyan R, Totrov M. Improving CAPRI predictions: optimized desolvation for rigid-body docking. Proteins 2005;60:308-313.
-
(2005)
Proteins
, vol.60
, pp. 308-313
-
-
Fernandez-Recio, J.1
Abagyan, R.2
Totrov, M.3
-
5
-
-
1542390499
-
Identification of protein-protein interaction sites from docking energy landscapes
-
Fernandez-Recio J, Totrov M, Abagyan R. Identification of protein-protein interaction sites from docking energy landscapes. J Mol Biol 2004;335:843-865.
-
(2004)
J Mol Biol
, vol.335
, pp. 843-865
-
-
Fernandez-Recio, J.1
Totrov, M.2
Abagyan, R.3
-
6
-
-
10844235653
-
Optimal docking area: A new method for predicting protein-protein interaction sites
-
Fernandez-Recio J, Totrov M, Skorodumov C, Abagyan R. Optimal docking area: a new method for predicting protein-protein interaction sites. Proteins 2005;58:134-143.
-
(2005)
Proteins
, vol.58
, pp. 134-143
-
-
Fernandez-Recio, J.1
Totrov, M.2
Skorodumov, C.3
Abagyan, R.4
-
7
-
-
34250882254
-
pyDock: Electrostatics and desolvation for effective scoring of rigid-body protein-protein docking
-
Man-Kuang Cheng T, Blundell TL, Fernandez-Recio J. pyDock: electrostatics and desolvation for effective scoring of rigid-body protein-protein docking. Proteins 2007;68:503-515.
-
(2007)
Proteins
, vol.68
, pp. 503-515
-
-
Man-Kuang Cheng, T.1
Blundell, T.L.2
Fernandez-Recio, J.3
-
8
-
-
0031565730
-
Modelling protein docking using shape complementarity, electrostatics and biochemical information
-
Gabb HA, Jackson RM, Sternberg MJ. Modelling protein docking using shape complementarity, electrostatics and biochemical information. J Mol Biol 1997;272:106-120.
-
(1997)
J Mol Biol
, vol.272
, pp. 106-120
-
-
Gabb, H.A.1
Jackson, R.M.2
Sternberg, M.J.3
-
9
-
-
0038185277
-
A novel shape complementarity scoring function for protein-protein docking
-
Chen R, Weng Z. A novel shape complementarity scoring function for protein-protein docking. Proteins 2003;51:397-408.
-
(2003)
Proteins
, vol.51
, pp. 397-408
-
-
Chen, R.1
Weng, Z.2
-
10
-
-
0029011701
-
A 2nd generation force-field for the simulation of proteins, nucleic-acids, and organic-molecules
-
Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM, Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA. A 2nd generation force-field for the simulation of proteins, nucleic-acids, and organic-molecules. J Am Chem Soc 1995;117:5179-5197.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
11
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali A, Blundell TL. Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 1993;234:779-815.
-
(1993)
J Mol Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
12
-
-
33749578940
-
Statistical potential for assessment and prediction of protein structures
-
Shen MY, Sali A. Statistical potential for assessment and prediction of protein structures. Protein Sci 2006;15:2507-2524.
-
(2006)
Protein Sci
, vol.15
, pp. 2507-2524
-
-
Shen, M.Y.1
Sali, A.2
-
14
-
-
0030767485
-
VERIFY3D: Assessment of protein models with three-dimensional profiles
-
Eisenberg D, Luthy R, Bowie JU. VERIFY3D: assessment of protein models with three-dimensional profiles. Method Enzymol 1997;277: 396-404.
-
(1997)
Method Enzymol
, vol.277
, pp. 396-404
-
-
Eisenberg, D.1
Luthy, R.2
Bowie, J.U.3
-
15
-
-
0033966170
-
Identification by genetic suppression of Escherichia coli TolB residues important for TolB-Pal interaction
-
Ray MC, Germon P, Vianney A, Portalier R, Lazzaroni JC. Identification by genetic suppression of Escherichia coli TolB residues important for TolB-Pal interaction. J Bacteriol 2000;182:821-824.
-
(2000)
J Bacteriol
, vol.182
, pp. 821-824
-
-
Ray, M.C.1
Germon, P.2
Vianney, A.3
Portalier, R.4
Lazzaroni, J.C.5
-
16
-
-
33645095436
-
Efficient restraints for protein-protein docking by comparison of observed amino acid substitution patterns with those predicted from local environment
-
Chelliah V, Blundell TL, Fernandez-Recio J. Efficient restraints for protein-protein docking by comparison of observed amino acid substitution patterns with those predicted from local environment. J Mol Biol 2006;357:1669-1682.
-
(2006)
J Mol Biol
, vol.357
, pp. 1669-1682
-
-
Chelliah, V.1
Blundell, T.L.2
Fernandez-Recio, J.3
-
17
-
-
0037077265
-
Identification of a substrate recognition site on Ubc9
-
Lin D, Tatham MH, Yu B, Kim S, Hay RT, Chen Y. Identification of a substrate recognition site on Ubc9. J Biol Chem 2002;277:21740-21748.
-
(2002)
J Biol Chem
, vol.277
, pp. 21740-21748
-
-
Lin, D.1
Tatham, M.H.2
Yu, B.3
Kim, S.4
Hay, R.T.5
Chen, Y.6
-
18
-
-
17844401751
-
SUMO modification of the ubiquitin-conjugating enzyme E2-25K
-
Pichler A, Knipscheer P, Oberhofer E, van Dijk WJ, Korner R, Olsen JV, Jentsch S, Melchior F, Sixma TK. SUMO modification of the ubiquitin-conjugating enzyme E2-25K. Nat Struct Mol Biol 2005;12:264-269.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 264-269
-
-
Pichler, A.1
Knipscheer, P.2
Oberhofer, E.3
van Dijk, W.J.4
Korner, R.5
Olsen, J.V.6
Jentsch, S.7
Melchior, F.8
Sixma, T.K.9
-
19
-
-
34247244814
-
Structural basis for ARF1-mediated recruitment of ARHGAP21 to Golgi membranes
-
Menetrey J, Perderiset M, Cicolari J, Dubois T, Elkhatib N, El Khadali F, Franco M, Chavrier P, Houdusse A. Structural basis for ARF1-mediated recruitment of ARHGAP21 to Golgi membranes. EMBO J 2007;26:1953-1962.
-
(2007)
EMBO J
, vol.26
, pp. 1953-1962
-
-
Menetrey, J.1
Perderiset, M.2
Cicolari, J.3
Dubois, T.4
Elkhatib, N.5
El Khadali, F.6
Franco, M.7
Chavrier, P.8
Houdusse, A.9
-
20
-
-
34247473840
-
Molecular mimicry enables competitive recruitment by a natively disordered protein
-
Bonsor DA, Grishkovskaya I, Dodson EJ, Kleanthous C. Molecular mimicry enables competitive recruitment by a natively disordered protein. J Am Chem Soc 2007;129:4800-4807.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 4800-4807
-
-
Bonsor, D.A.1
Grishkovskaya, I.2
Dodson, E.J.3
Kleanthous, C.4
-
21
-
-
34548726434
-
A novel and unexpected complex between the SUMO-1-conjugating enzyme UBC9 and the Ubiquitin-conjugating enzyme E2-25 kDa
-
To be published
-
Walker JR, Awakumov GV, Xue S, Newman EM, Mackenzie F, Weigelt J, Sundstrom M, Arrowsmith CH, Edwards AM, Bochkarev A, Dhe-Paganon S. A novel and unexpected complex between the SUMO-1-conjugating enzyme UBC9 and the Ubiquitin-conjugating enzyme E2-25 kDa. To be published.
-
-
-
Walker, J.R.1
Awakumov, G.V.2
Xue, S.3
Newman, E.M.4
Mackenzie, F.5
Weigelt, J.6
Sundstrom, M.7
Arrowsmith, C.H.8
Edwards, A.M.9
Bochkarev, A.10
Dhe-Paganon, S.11
-
22
-
-
36749095610
-
NEDD4-like E3 Ubiquitin-protein Ligase
-
To be published
-
Walker JR, Awakumov GV, Xue S, Butler-Cole C, Weigelt J, Sundstrom M, Arrowsmith CH, Edwards AM, Bochkarev A, Dhe-Paganon S. NEDD4-like E3 Ubiquitin-protein Ligase. To be published.
-
-
-
Walker, J.R.1
Awakumov, G.V.2
Xue, S.3
Butler-Cole, C.4
Weigelt, J.5
Sundstrom, M.6
Arrowsmith, C.H.7
Edwards, A.M.8
Bochkarev, A.9
Dhe-Paganon, S.10
-
23
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
Dominguez C, Boelens R, Bonvin AM. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J Am Chem Soc 2003;125:1731-1737.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
|