-
1
-
-
0030925920
-
Pfam: A comprehensive database of protein domain families based on seed alignments
-
Sonnhammer, E.L.L., Eddy, S.R. and Durbin, R. (1997) Pfam: A comprehensive database of protein domain families based on seed alignments. Proteins, 28, 405-420.
-
(1997)
Proteins
, vol.28
, pp. 405-420
-
-
Sonnhammer, E.L.L.1
Eddy, S.R.2
Durbin, R.3
-
2
-
-
33644876020
-
Pfam: Clans, web tools and services
-
Finn, R.D., Mistry, J., Schuster-Bockler, B., Griffiths-Jones, S., Hollich, V., Lassmann, T., Moxon, S., Marshall, M., Khanna, A. et al. (2006) Pfam: Clans, web tools and services. Nucleic Acids Res., 34, D247-D251.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Bockler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
-
3
-
-
13444305296
-
The ProDom database of protein domain families: More emphasis on 3D
-
Bru, C., Courcelle, E., Carrere, S., Beausse, Y., Dalmar, S. and Kahn, D. (2005) The ProDom database of protein domain families: More emphasis on 3D. Nucleic Acids Res., 33, D212-D215.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Bru, C.1
Courcelle, E.2
Carrere, S.3
Beausse, Y.4
Dalmar, S.5
Kahn, D.6
-
4
-
-
33846041078
-
The Universal Protein Resource (UniProt)
-
Bairoch, A., Apweiler, R., Wu, C.H., Barker, W.C., Boeckmann, B., Ferro, S., Gasteiger, E., Huang, H., Lopez, R. et al. (2007) The Universal Protein Resource (UniProt). Nucleic Acids Res., 35 D193-D197.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
-
5
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N. and Bourne, P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
6
-
-
0346494941
-
SCOP database in 2004: Refinements integrate structure and sequence family data
-
Andreeva, A., Howorth, D., Brenner, S.E., Hubbard, T.J., Chothia, C. and Murzin, A.G. (2004) SCOP database in 2004: Refinements integrate structure and sequence family data. Nucleic Acids Res., 32, D226-D229.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Andreeva, A.1
Howorth, D.2
Brenner, S.E.3
Hubbard, T.J.4
Chothia, C.5
Murzin, A.G.6
-
7
-
-
16344373015
-
Protein homology detection by HMM-HMM comparison
-
Soding, J. (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics, 21, 951-960.
-
(2005)
Bioinformatics
, vol.21
, pp. 951-960
-
-
Soding, J.1
-
8
-
-
34248590379
-
SCOOP: A simple method for identification of novel protein superfamily relationships
-
Bateman, A. and Finn, R.D. (2007) SCOOP: A simple method for identification of novel protein superfamily relationships. Bioinformatics, 23, 809-814.
-
(2007)
Bioinformatics
, vol.23
, pp. 809-814
-
-
Bateman, A.1
Finn, R.D.2
-
9
-
-
13844264506
-
iPfam: Visualization of protein-protein interactions in PDB at domain and amino acid resolutions
-
Finn, R.D., Marshall, M. and Bateman, A. (2005) iPfam: Visualization of protein-protein interactions in PDB at domain and amino acid resolutions. Bioinformatics, 21, 410-412.
-
(2005)
Bioinformatics
, vol.21
, pp. 410-412
-
-
Finn, R.D.1
Marshall, M.2
Bateman, A.3
-
10
-
-
2942547885
-
The distributed annotation system
-
Dowell, R.D., Jokerst, R.M., Day, A., Eddy, S.R. and Stein, L. (2001) The distributed annotation system. BMC Bioinformatics, 2, 7.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 7
-
-
Dowell, R.D.1
Jokerst, R.M.2
Day, A.3
Eddy, S.R.4
Stein, L.5
-
11
-
-
34547840169
-
ProServer: A simple, extensible Perl DAS server
-
Finn, R.D., Stalker, J.W., Jackson, D.K., Kulesha, E., Clements, J. and Pettett, R. (2007) ProServer: A simple, extensible Perl DAS server. Bioinformatics, 23, 1568-1570.
-
(2007)
Bioinformatics
, vol.23
, pp. 1568-1570
-
-
Finn, R.D.1
Stalker, J.W.2
Jackson, D.K.3
Kulesha, E.4
Clements, J.5
Pettett, R.6
-
12
-
-
35348873256
-
Predicting active site residue annotations in the Pfam Database
-
Mistry, J., Bateman, A. and Finn, R.D. (2007) Predicting active site residue annotations in the Pfam Database. BMC Bioinformatics, 8 298.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 298
-
-
Mistry, J.1
Bateman, A.2
Finn, R.D.3
-
13
-
-
33846062023
-
Database resources of the National Center for Biotechnology Information
-
Wheeler, D.L., Barrett, T., Benson, D.A., Bryant, S.H., Canese, K., Chetvernin, V., Church, D.M., DiCuccio, M., Edgar, R. et al. (2007) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 35, D5-D12.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
Church, D.M.7
DiCuccio, M.8
Edgar, R.9
-
14
-
-
33846076975
-
EMBL Nucleotide Sequence Database in 2006
-
Kulikova, T., Akhtar, R., Aldebert, P., Althorpe, N., Andersson, M., Baldwin, A., Bates, K, Bhattacharyya, S., Bower, L. et al. (2007) EMBL Nucleotide Sequence Database in 2006. Nucleic Acids Res., 35, D16-D20.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kulikova, T.1
Akhtar, R.2
Aldebert, P.3
Althorpe, N.4
Andersson, M.5
Baldwin, A.6
Bates, K.7
Bhattacharyya, S.8
Bower, L.9
-
15
-
-
23944495106
-
Metagenomics for studying unculturable microorganisms: Cutting the Gordian knot
-
Schloss, P.D. and Handelsman, J. (2005) Metagenomics for studying unculturable microorganisms: Cutting the Gordian knot. Genome Biol. 6, 229.
-
(2005)
Genome Biol
, vol.6
, pp. 229
-
-
Schloss, P.D.1
Handelsman, J.2
-
16
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch, D.B., Halpern, A.L., Sutton, G., Heidelberg, K.B., Williamson, S., Yooseph, S., Wu, D., Eisen, J.A., Hoffman, J.M. et al. (2007) The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific. PLoS Biol., 5, e77.
-
(2007)
PLoS Biol
, vol.5
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
Wu, D.7
Eisen, J.A.8
Hoffman, J.M.9
-
17
-
-
33947235074
-
The Sorcerer II Global Ocean Sampling expedition: Expanding the universe of protein families
-
Yooseph, S., Sutton, G., Rusch, D.B., Halpern, A.L., Williamson, S.J., Remington, K., Eisen, JA., Heidelberg, K.B., Manning, G. et al. (2007) The Sorcerer II Global Ocean Sampling expedition: Expanding the universe of protein families. PLoS Biol., 5, e16.
-
(2007)
PLoS Biol
, vol.5
-
-
Yooseph, S.1
Sutton, G.2
Rusch, D.B.3
Halpern, A.L.4
Williamson, S.J.5
Remington, K.6
Eisen, J.A.7
Heidelberg, K.B.8
Manning, G.9
-
18
-
-
2142657817
-
A combined transmembrane topology and signal peptide, prediction method
-
Kall, L., Krogh, A. and Sonnhammer, E.L. (2004) A combined transmembrane topology and signal peptide, prediction method. J. Mol. Biol., 338, 1027-1036.
-
(2004)
J. Mol. Biol
, vol.338
, pp. 1027-1036
-
-
Kall, L.1
Krogh, A.2
Sonnhammer, E.L.3
-
19
-
-
36448991500
-
-
Larkin, M.A, Blackshields, G, Brown, N.P, Chenna, R, McGettigan, P.A, McWilliam, H, Valentin, F, Wallace, I.M, Wilm, A. et al, 2007 ClustalW and ClustalX version 2.0 Bioinformatics, 23, 2947-2948
-
Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., Valentin, F., Wallace, I.M., Wilm, A. et al. (2007) ClustalW and ClustalX version 2.0 Bioinformatics, 23, 2947-2948.
-
-
-
|