-
1
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dumpelfeld B, Edelmann A, Heurtier MA, Hoffman V, Hoefert C, Klein K, Hudak M, Michon AM, Scheider M, Schirle M, Remor M, Rudi T, Hooper S, Bauer A, Bouwmeester T, Casari G, Drewes G, Neubauer G, Rick JM, Kuster B, Bork P, Russell RB, Superti-Furga G. Proteome survey reveals modularity of the yeast cell machinery. Nature 2006;440:631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dumpelfeld, B.10
Edelmann, A.11
Heurtier, M.A.12
Hoffman, V.13
Hoefert, C.14
Klein, K.15
Hudak, M.16
Michon, A.M.17
Scheider, M.18
Schirle, M.19
Remor, M.20
Rudi, T.21
Hooper, S.22
Bauer, A.23
Bouwmeester, T.24
Casari, G.25
Drewes, G.26
Neubauer, G.27
Rick, J.M.28
Kuster, B.29
Bork, P.30
Russell, R.B.31
Superti-Furga, G.32
more..
-
2
-
-
33645453254
-
-
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrin-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006;440:637-643.
-
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrin-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006;440:637-643.
-
-
-
-
3
-
-
33845875196
-
Relating three-dimensional structures to protein networks provides evolutionary insights
-
Kim PM, Lu LJ, Xia Y, Gerstein MB. Relating three-dimensional structures to protein networks provides evolutionary insights. Science 2006;314:1938-1941.
-
(2006)
Science
, vol.314
, pp. 1938-1941
-
-
Kim, P.M.1
Lu, L.J.2
Xia, Y.3
Gerstein, M.B.4
-
4
-
-
14844322305
-
Large molecular complexes in the protein data bank: A status report
-
Dutta S, Berman HM. Large molecular complexes in the protein data bank: a status report. Structure 2005;13:381-388.
-
(2005)
Structure
, vol.13
, pp. 381-388
-
-
Dutta, S.1
Berman, H.M.2
-
5
-
-
0036616218
-
The protein data bank
-
Berman HM, Battistuz T, Bhat TN, Bluhm WF, Bourne PE, Burkhardt K, Feng Z, Gilliland GL, Iype L, Jain S, Fagan P, Marvin J, Padilla D, Ravichandran V, Schneider B, Thanki N, Weissig H, Westbrook JD, Zardecki C. The protein data bank. Acta Crystallogr D Biol Crystallogr 2002;58(Part 6 No 1):899-907.
-
(2002)
Acta Crystallogr D Biol Crystallogr
, vol.58
, Issue.1 PART 6
, pp. 899-907
-
-
Berman, H.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
Bourne, P.E.5
Burkhardt, K.6
Feng, Z.7
Gilliland, G.L.8
Iype, L.9
Jain, S.10
Fagan, P.11
Marvin, J.12
Padilla, D.13
Ravichandran, V.14
Schneider, B.15
Thanki, N.16
Weissig, H.17
Westbrook, J.D.18
Zardecki, C.19
-
6
-
-
0037435031
-
From words to literature in structural proteomics
-
Sali A, Glaeser R, Earnest T, Baumeister W. From words to literature in structural proteomics. Nature 2003;422:216-225.
-
(2003)
Nature
, vol.422
, pp. 216-225
-
-
Sali, A.1
Glaeser, R.2
Earnest, T.3
Baumeister, W.4
-
7
-
-
7444267932
-
High-throughput computational and experimental techniques in structural genomics
-
Chance MR, Fiser A, Sali A, Pieper U, Eswar N, Xu G, Fajardo JE, Radhakannan T, Marinkovic N. High-throughput computational and experimental techniques in structural genomics. Genome Res 2004;14:2145-2154.
-
(2004)
Genome Res
, vol.14
, pp. 2145-2154
-
-
Chance, M.R.1
Fiser, A.2
Sali, A.3
Pieper, U.4
Eswar, N.5
Xu, G.6
Fajardo, J.E.7
Radhakannan, T.8
Marinkovic, N.9
-
8
-
-
30344459116
-
Critical assessment of methods of protein structure prediction (CASP) - round 6
-
Moult J, Fidelis K, Rost B, Hubbard T, Tramontano A. Critical assessment of methods of protein structure prediction (CASP) - round 6. Proteins 2005;61 (Suppl 7):3-7.
-
(2005)
Proteins
, vol.61
, Issue.SUPPL. 7
, pp. 3-7
-
-
Moult, J.1
Fidelis, K.2
Rost, B.3
Hubbard, T.4
Tramontano, A.5
-
9
-
-
0038359614
-
CAPRI: A critical assessment of PRedicted Interactions
-
Janin J, Henrick K, Moult J, Eyck LT, Sternberg MJ, Vajda S, Vakser I, Wodak SJ. CAPRI: a critical assessment of PRedicted Interactions. Proteins 2003;52:2-9.
-
(2003)
Proteins
, vol.52
, pp. 2-9
-
-
Janin, J.1
Henrick, K.2
Moult, J.3
Eyck, L.T.4
Sternberg, M.J.5
Vajda, S.6
Vakser, I.7
Wodak, S.J.8
-
10
-
-
0038021436
-
Assessment of blind predictions of protein-protein interactions: Current status of docking methods
-
Mendez R, Leplae R, De Maria L, Wodak SJ. Assessment of blind predictions of protein-protein interactions: current status of docking methods. Proteins 2003;52:51-67.
-
(2003)
Proteins
, vol.52
, pp. 51-67
-
-
Mendez, R.1
Leplae, R.2
De Maria, L.3
Wodak, S.J.4
-
11
-
-
21644469377
-
Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures
-
Mendez R, Leplae R, Lensink MF, Wodak SJ. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures. Proteins 2005;60:150-169.
-
(2005)
Proteins
, vol.60
, pp. 150-169
-
-
Mendez, R.1
Leplae, R.2
Lensink, M.F.3
Wodak, S.J.4
-
12
-
-
34447286908
-
Meeting report: The third CAPRI assessment meeting Toronto, Canada, April 20-21
-
Janin J, Wodak SJ. Meeting report: the third CAPRI assessment meeting Toronto, Canada, April 20-21, Structure 2007;15:755-759.
-
(2007)
Structure
, vol.15
, pp. 755-759
-
-
Janin, J.1
Wodak, S.J.2
-
13
-
-
36749006582
-
The targets of CAPRI rounds 6-12
-
Janin J. The targets of CAPRI rounds 6-12, Proteins 2007;69:699-703.
-
(2007)
Proteins
, vol.69
, pp. 699-703
-
-
Janin, J.1
-
14
-
-
34247244814
-
Structural basis for ARF1-mediated recruitment of ARHGAP21 to golgi membranes
-
Ménétrey J, Perderiset M, Cicolari J, Dubois T, Elkhatib N, El Khadali F, Franco M, Chavrier P, Houdusse A. Structural basis for ARF1-mediated recruitment of ARHGAP21 to golgi membranes. EMBO J 2007;26:1953-1962.
-
(2007)
EMBO J
, vol.26
, pp. 1953-1962
-
-
Ménétrey, J.1
Perderiset, M.2
Cicolari, J.3
Dubois, T.4
Elkhatib, N.5
El Khadali, F.6
Franco, M.7
Chavrier, P.8
Houdusse, A.9
-
15
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
Lo Conte L, Chothia C, Janin J. The atomic structure of protein-protein recognition sites. J Mol Biol 1999;285:2177-2198.
-
(1999)
J Mol Biol
, vol.285
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
16
-
-
1842861590
-
Prediction of protein-protein interactions: The CAPRI experiment, its evaluation and implications
-
Wodak SJ, Mendez R. Prediction of protein-protein interactions: the CAPRI experiment, its evaluation and implications. Curr Opin Struct Biol 2004;14:242-249.
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 242-249
-
-
Wodak, S.J.1
Mendez, R.2
-
17
-
-
34247473840
-
Molecular mimicry enables competitive recruitment by a natively disordered protein
-
Bonsor DA, Grishkovskaya I, Dodson EJ, Kleanthous C. Molecular mimicry enables competitive recruitment by a natively disordered protein. J Am Chem Soc 2007;129:4800-4807.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 4800-4807
-
-
Bonsor, D.A.1
Grishkovskaya, I.2
Dodson, E.J.3
Kleanthous, C.4
-
18
-
-
29144491478
-
Molecular basis for bacterial class I release factor methylation by PrmC
-
Graille M, Heurgue-Hamard V, Champ S, Mora L, Scrima N, Ulryck N, van Tilbeurgh H, Buckingham RH. Molecular basis for bacterial class I release factor methylation by PrmC. Mol Cell 2005;20:917-927.
-
(2005)
Mol Cell
, vol.20
, pp. 917-927
-
-
Graille, M.1
Heurgue-Hamard, V.2
Champ, S.3
Mora, L.4
Scrima, N.5
Ulryck, N.6
van Tilbeurgh, H.7
Buckingham, R.H.8
-
19
-
-
21644458102
-
Classification of protein complexes based on docking difficulty
-
Vajda S. Classification of protein complexes based on docking difficulty. Proteins 2005;60:176-180.
-
(2005)
Proteins
, vol.60
, pp. 176-180
-
-
Vajda, S.1
-
20
-
-
0000009443
-
Rapid comparison of protein structures
-
McLachlan A. Rapid comparison of protein structures. Acta Crystallogr A 1982;38:871-873.
-
(1982)
Acta Crystallogr A
, vol.38
, pp. 871-873
-
-
McLachlan, A.1
-
21
-
-
20844445832
-
Structural basis of the Sir1-origin recognition complex interaction in transcriptional silencing
-
Hou Z, Bernstein DA, Fox CA, Keck JL. Structural basis of the Sir1-origin recognition complex interaction in transcriptional silencing. Proc Natl Acad Sci USA 2005;102:8489-8494.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 8489-8494
-
-
Hou, Z.1
Bernstein, D.A.2
Fox, C.A.3
Keck, J.L.4
-
22
-
-
0036468385
-
Prediction of protein-protein interactions by docking methods
-
Smith GR, Sternberg MJE. Prediction of protein-protein interactions by docking methods. Curr Opin Struct Biol 2002;12:28-35.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 28-35
-
-
Smith, G.R.1
Sternberg, M.J.E.2
-
23
-
-
0036606483
-
Principles of docking: An overview of search algorithms and a guide to scoring functions
-
Halperin I, Ma B, Wolfson H, Nussinov R. Principles of docking: an overview of search algorithms and a guide to scoring functions. Proteins 2002;47:409-443.
-
(2002)
Proteins
, vol.47
, pp. 409-443
-
-
Halperin, I.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
24
-
-
25844431698
-
Coarse-grained normal mode analysis in structural biology
-
Bahar I, Rader AJ. Coarse-grained normal mode analysis in structural biology. Curr Opin Struct Biol 2005;15:586-592.
-
(2005)
Curr Opin Struct Biol
, vol.15
, pp. 586-592
-
-
Bahar, I.1
Rader, A.J.2
|