Structural and functional relationships of the XPF/MUS81 family of proteins

Annual Review of Biochemistry

Volumn 77, Issue , 2008, Pages 259-287

  Ciccia, Alberto ^a,c   McDonald, Neil ^a,b   West, Stephen C ^a  

^a IMPERIAL CANCER RESEARCH FUND   (United Kingdom)

^b UNIVERSITY OF LONDON   (United Kingdom)

^c HARVARD MEDICAL SCHOOL   (United States)

Author keywords

Cross link repair; Fanconi anemia; Meiosis; Nucleotide excision repair; Recombination

Indexed keywords

PROTEIN; PROTEIN MUS81; PROTEIN XPF; UNCLASSIFIED DRUG; DNA BINDING PROTEIN; ENDONUCLEASE; MUS81 PROTEIN, HUMAN; MUS81 PROTEIN, MOUSE; XERODERMA PIGMENTOSUM GROUP F PROTEIN;

DNA DAMAGE; DNA REPAIR; DNA STRUCTURE; HUMAN; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN STRUCTURE; REVIEW; AMINO ACID SEQUENCE; ANIMAL; BIOCHEMISTRY; FANCONI ANEMIA; GENETICS; MEIOSIS; METABOLISM; METHODOLOGY; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MOUSE; PHYSIOLOGY; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY;

EUKARYOTA; VERTEBRATA;

AMINO ACID SEQUENCE; ANIMALS; BIOCHEMISTRY; DNA REPAIR; DNA-BINDING PROTEINS; ENDONUCLEASES; EVOLUTION, MOLECULAR; FANCONI ANEMIA; HUMANS; MEIOSIS; MICE; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 50649091874     PISSN: 00664154     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.biochem.77.070306.102408     Document Type: Review

References (154)

1. Liu Y, West SC. 2004. Nat. Rev. Mol. Cell Biol. 5:937-44
2. Lilley DMJ, White MF. 2001. Nat. Rev. Mol. Cell Biol. 2:433-43
3. Lieber MR. 1997. BioEssays 19:233-40
4. O'Donovan A, Davies AA, Moggs JG, West SC, Wood RD. 1994. Nature 371:432-35
5. White MF. 2003. Biochem. Soc. Trans. 31:690-93
6. Sijbers AM, Delaat WL, Ariza RR, Biggerstaff M, Wei YF, et al. 1996. Cell 86:811-22
7. Boddy MN, Gaillard PHL, McDonald WH, Shanahan P, Yates JR, Russell P. 2001. Cell 107:537-48
8. Nishino T, Komori K, Ishino Y, Morikawa K. 2003. Structure 11:445-57
9. Newman M, Murray-Rust J, Lally J, Rudolf J, Fadden A, et al. 2005. EMBO J. 24:895-905
10. Interthal H, Heyer WD. 2000. Mol. Gen. Genet. 263:812-27
11. Chen XB, Melchionna R, Denis CM, Gaillard PHL, Blasina A, et al. 2001. Mol. Cell 8:1117-27
12. Ciccia A, Constantinou A, West SC. 2003. J. Biol. Chem. 278:25172-78
13. Ögrünc M, Sancar A. 2003. J. Biol. Chem. 278:21715-20
14. Ciccia A, Ling C, Coulthard R, Yan Z, Xue Y, et al. 2007. Mol. Cell 25:331-43
15. Bailly V, Sommers CH, Sung P, Prakash L, Prakash S. 1992. Proc. Natl. Acad. Sci. USA 89:8273-77
16. Bardwell L, Cooper AJ, Friedberg EC. 1992. Mol. Cell. Biol. 12:3041-49
17. Carr AM, Schmidt H, Kirchhoff S, Muriel WJ, Sheldrick KS, et al. 1994. Mol. Cell. Biol. 14:2029-40
18. Kaliraman V, Mullen JR, Fricke WM, Bastin-Shanower SA, Brill SJ. 2001. Genes Dev. 15:2730-40
19. Shao X, Grishin NV. 2000. Nucleic Acids Res. 28:2643-50
20. Tsodikov OV, Enzlin JH, Scharer OD, Ellenberger T. 2005. Proc. Natl. Acad. Sci. USA 102:11236-41
21. Roberts JA, Bell SD, White MF. 2003. Mol. Microbiol. 48:361-71
22. Komori K, Fujikane R, Shinagawa H, Ishino Y. 2002. Genes Genet. Syst. 77:227-41
23. Nishino T, Komori K, Tsuchiya D, Ishino Y, Morikawa K. 2005. Structure 13:143-53
24. Roberts JA, White MF. 2005. J. Biol. Chem. 280:5924-28
25. Nishino T, Komori K, Ishino Y, Morikawa K. 2005. Structure 13:1183-92
26. Pingoud A, Fuxreiter M, Pinfoud V, Wende W. 2005. Cell. Mol. Life Sci. 62:685-707
27. Enzlin JH, Scharer OD. 2002. EMBO J. 21:2045-53
28. Meetei AR, Medhurst AL, Ling C, Xue YT, Singh TR, et al. 2005. Nat. Genet. 37:958-63
29. Li L, Elledge SJ, Peterson CA, Bales ES, Legerski RJ. 1994. Proc. Natl. Acad. Sci. USA 91:5012-16
30. Thayer MM, Ahern H, Xing D, Cunningham RP, Tainer JA. 1995. EMBO J. 14:4108-20
31. Doherty AJ, Serpell LC, Ponting CP. 1996. Nucleic Acids Res. 24:2488-97
32. Rafferty JB, Ingleston SM, Hargreaves D, Artymiuk PJ, Sharples GJ, et al. 1998. J. Mol. Biol. 278:105-16
33. Singh S, Folkers GE, Bonvin AM, Boelens R, Wechselberger R, et al. 2002. EMBO J. 21:6257-66
34. Tripsianes K, Folkers G, Ab E, Das D, Odijk H, et al. 2005. Structure 13:1849-58
35. De Laat WL, Appeldoorn E, Jaspers NGJ, Hoeijmakers JHJ. 1998. J. Biol. Chem. 273:7835-42
36. Mosedale G, Niedzwiedz W, Alpi A, Perrina F, Pereira-Leal JB, et al. 2005. Nat. Struct. Mol. Biol. 12:763-71
37. Komori K, Hidaka M, Horiuchi T, Fujikane R, Shinagawa H, Ishino Y. 2004. J. Biol. Chem. 279:53175-85
38. Caruthers JM, McKay DB. 2002. Curr. Opin. Struct. Biol. 12:123-33
39. Aravind L, Makarova KS, Koonin EV. 2000. Nucleic Acids Res. 28:3417-32
40. Sgouros J, Gaillard PHL, Wood RD. 1999. Trends Biochem. Sci. 24:95-97
41. Sung P, Reynolds P, Prakash L, Prakash S. 1993. J. Biol. Chem. 268:26391-99
42. Tomkinson AE, Bardwell AJ, Bardwell L, Tappe NJ, Friedberg EC. 1993. Nature 362:860-62
43. Bardwell AJ, Bardwell L, Johnson DK, Friedberg EC. 1993. Mol. Microbiol. 8:1177-88
44. Bardwell AJ, Bardwell L, Tomkinson AE, Friedberg EC. 1994. Science 265:2082-85
45. Davies AA, Friedberg EC, Tomkinson AE, Wood RD, West SC. 1995. J. Biol. Chem. 270:24638-41
46. Rodriguez K, Wang ZG, Friedberg EC, Tomkinson AE. 1996. J. Biol. Chem. 271:20551-58
47. Park CH, Bessho T, Matsunaga T, Sancar A. 1995. J. Biol. Chem. 270:22657-60
48. Aravind L, Walker DR, Koonin EV. 1999. Nucleic Acids Res. 27:1223-42
49. Reynolds RJ, Love JD, Friedberg EC. 1981. J. Bacteriol. 147:705-8
50. Westerveld A, Hoeijmakers JHJ, van Duin M, de Wit J, Odijk H, et al. 1984. Nature 310:425-29
51. Kondo S, Mamada A, Miyamoto C, Keong CH, Satoh Y, Fujiwara Y. 1989. Photodermatology 6:89-95
52. Hoeijmakers JH. 2001. Nature 411:366-74
53. Cleaver JE. 2005. Nat. Rev. Cancer 7:564-73
54. Svejstrup JQ. 2002. Nat. Rev. Mol. Cell Biol. 3:21-29
55. Bregman DB, Halaban R, Van Gool AJ, Henning KA, Friedberg EC, Warren SL. 1996. Proc. Natl. Acad. Sci. USA 93:11586-90
56. Lehmann AR. 2003. Biochimie 85:1101-11
57. Sargent RG, Brenneman MA, Wilson JH. 1997. Mol. Cell. Biol. 17:267-77
58. Schiestl RH, Prakash S. 1988. Mol. Cell. Biol. 8:3619-26
59. Paques F, Haber JE. 1999. Microbiol. Mol. Biol. Rev. 63:349-404
60. McGlynn P, Lloyd RG. 2002. Nat. Rev. Mol. Cell Biol. 3:859-70
61. Mortensen UH, Bendixen C, Sunjevaric I, Rothstein R. 1996. Proc. Natl. Acad. Sci. USA 93:10729-34
62. Van Dyck E, Stasiak AZ, Stasiak A, West SC. 2001. EMBO Rep. 2:905-9
63. Adair GR, Rolig RL, Moore-Faver D, Zabelshansky M, Wilson JH, Nairn RS. 2000. EMBO J. 19:5552-61
64. Fishman-Lobell J, Haber JE. 1992. Science 258:480-84
65. Ivanov EL, Haber JE. 1995. Mol. Cell. Biol. 15:2245-51
66. Hsia KT, Millar MR, King S, Selfridge J, Redhead NJ, et al. 2003. Development 130:369-78
67. Shannon M, Lamerdin JE, Richardson L, McCutchen-Maloney SL, Hwang MH, et al. 1999. Genomics 62:427-35
68. Yildiz O, Kearney H, Kramer BC, Sekelsky JJ. 2004. Genetics 167:263-73
69. Yildiz O, Majumder S, Kramer B, Sekelsky JJ. 2002. Mol. Cell 10:1503-9
70. Radford SJ, Goley E, Baxter K, McMahan S, Sekelsky J. 2005. Genetics 170:1737-45
71. Prasher JM, Lalai AS, Heijmans-Antonissen C, Ploemacher RE, Hoeijmakers JH, et al. 2005. EMBO J. 24:861-71
72. Weeda G, Donker I, de Wit J, Morreau H, Janssens R, et al. 1997. Curr. Biol. 7:427-39
73. Niedernhofer LJ, Garinis GA, Raams A, Lalai AS, Robinson AR, et al. 2006. Nature 444:1038-43
74. Matsumura Y, Nishigori C, Yagi T, Imamura S, Takebe H. 1998. Hum. Mol. Genet. 7:969-74
75. Jaspers NG, Raams A, Silengo MC, Wijgers N, Niedernhofer LJ, et al. 2007. Am. J. Hum. Genet. 80:457-66
76. Lombard DB, Chua KF, Mostoslavsky R, Franco S, Gostissa M, Alt FW. 2005. Cell 120:497-512
77. Guillet M, Boiteux S. 2002. EMBO J. 21:2833-41
78. Guzder SN, Torres-Ramos C, Johnson RE, Haracska L, Prakash L, Prakash S. 2004. Genes Dev. 18:2283-91
79. Stewart SA, Weinberg RA. 2006. Annu. Rev. Cell Dev. Biol. 22:531-57
80. Zhu X-D, Nierdernhofer L, Kuster B, Mann M, Hoeijmakers JHJ, de Lange T. 2003. Mol. Cell 12:1489-98
81. van Steensel B, Smogorzewska A, de Lange T. 1998. Cell 92:401-13
82. Munoz P, Blanco R, Flores JM, Blasco MA. 2005. Nat. Genet. 37:1063-71
83. Boddy MN, Lopez-Girona A, Shanahan P, Interthal H, Heyer WD, Russell P. 2000. Mol. Cell. Biol. 20:8758-66
84. Bastin-Shanower SA, Fricke WM, Mullen JR, Brill SJ. 2003. Mol. Cell. Biol. 23:3487-96
85. Gaillard P-HL, Noguchi E, Shanahan P, Russell P. 2003. Mol. Cell 12:747-59
86. Osman F, Dixon J, Doe CL, Whitby MC. 2003. Mol. Cell 12:761-74
87. Doe CL, Ahn JS, Dixon J, Whitby MC. 2002. J Biol. Chem. 277:32753-59
88. Whitby MC, Osman F, Dixon J. 2003. J. Biol. Chem. 278:6928-35
89. Gaskell LJ, Osman F, Gilbert RJ, Whitby MC. 2007. EMBO J. 26:1891-901
90. Neale MJ, Keeney S. 2006. Nature 442:153-58
91. Whitby MC. 2005. Biochem. Soc. Trans. 33:1451-55
92. Smith GR, Boddy MN, Shanahan P, Russell P. 2003. Genetics 165:2289-93
93. Cromie GA, Hyppa RW, Taylor AF, Zakharyevich K, Hunter N, Smith GR. 2006. Cell 127:1167-78
94. de los Santos T, Loidl J, Larkin B, Hollingsworth NM. 2001. Genetics 159:1511-25
95. de los Santos T, Hunter N, Lee C, Larkin B, Loidl J, Hollingsworth NM. 2003. Genetics 164:81-94
96. Hollingsworth NM, Brill SJ. 2004. Genes Dev. 18:117-25
97. Dendouga N, Gao H, Moechars D, Janicot M, Vialard J, McGowan CH. 2005. Mol. Cell. Biol. 25:7569-79
98. McPherson JP, Lemmers B, Chahwan R, Pamidi A, Migon E, et al. 2004. Science 304:1822-26
99. Biais V, Gao H, Elwell CA, Boddy MN, Gaillard PHL, et al. 2004. Mol. Biol. Cell 15:552-62
100. Abraham J, Lemmers B, Hande MP, Moynahan ME, Chahwan C, et al. 2003. EMBO J. 22:6137-47
101. Constantinou A, Chen X-B, McGowan CH, West SC. 2002. EMBO J. 21:5577-85
102. Wu L, Hickson ID. 2003. Nature 426:870-74
103. Lehmann AR. 1972. J. Mol. Biol. 66:319-37
104. Lopes M, Foiani M, Sogo JM. 2006. Mol. Cell 21:15-27
105. Lehmann AR. 2005. FEBS Lett. 579:873-76
106. Doe CL, Whitby MC. 2004. Nucleic Acids Res. 32:1480-91
107. Fabre F, Chan A, Heyer WD, Gangloff S. 2002. Proc. Natl. Acad. Sci. USA 99:16887-92
108. Mullen JR, Kaliraman V, Ibrahim SS, Brill SJ. 2001. Genetics 157:103-18
109. Lambert S, Carr AM. 2005. Biochimie 87:591-602
110. Ahn JS, Osman F, Whitby MC. 2005. EMBO J. 24:2011-23
111. Doe CL, Dixon J, Osman F, Whitby MC. 2000. EMBO J. 19:2751-62
112. Karow JK, Constantinou A, Li J-L, West SC, Hickson ID. 2000. Proc. Natl. Acad. Sci. USA 97:6504-8
113. Ralf C, Hickson ID, Wu L. 2006. J. Biol. Chem. 281:22839-46
114. Hanada K, Budzowska M, Modesti M, Maas A, Wyman C, et al. 2006. EMBO J. 25:4921-32
115. Kai M, Boddy MN, Russell P, Wang TS-F. 2005. Gewa-Deu. 19:919-32
116. Hiyama T, Katsura M, Yoshihara T, Ishida M, Kinomura A, et al. 2006. Nucleic Acids Res. 34:880-92
117. Gao H, Chen XB, McGowan CH. 2003. Mol. Biol. Cell 14:4826-34
118. Prakash R, Krejci L, Van Komen S, Schurer KA, Kramer W, Sung P. 2005. J. Biol. Chem. 280:7854-60
119. Fei PW, Yin JH, Wang WD. 2005. Cell Cycle 4:80-86
120. D'Andrea AD, Grompe M. 2003. Nat. Rev. Cancer 3:23-34
121. Alter BP. 2003. Cancer 97:425-40
122. Ishida R, Buchwald M. 1982. Cancer Res. 42:4000-6
123. Niedernhofer LJ, Lalai AS, Hoeijmakers JHJ. 2005. Cell 123:1191-98
124. Kennedy RD, D'Andrea AD. 2005. Genes Dev. 19:2925-40
125. Smogorzewska A, Matsuoka S, Vinciguerra P, McDonald ER, Hurov KE, et al. 2007. Cell 129:289-301
126. Patel KJ. 2007. Nat. Genet. 39:142-43
127. Garcia-Higuera I, Kuang Y, Denham J, D'Andrea AD. 2000. Blood 96:3224-30
128. Medhurst AL, Laghmani el H, Steltenpool J, Ferrer M, Fontaine C, et al. 2006. Blood 108:2072-80
129. Ling C, Ishiai M, Ali AM, Medhurst AL, Neveling K, et al. 2007. EMBO J. 24:2104-14
130. Garcia-Higuera I, Taniguchi T, Ganesan S, Meyn MS, Timmers C, et al. 2001. Mol. Cell 7:249-62
131. Meetei AR, de Winter JP, Medhurst AL, Wallisch M, Waisfisz Q, et al. 2003. Nat. Genet. 35:165-70
132. Meetei AR, Levitus M, Xue YT, Medhurst AL, Zwaan M, et al. 2004. Nat. Genet. 36:1219-24
133. Taniguchi T, D'Andrea AD. 2002. Int. J. Hematol. 75:123-28
134. Howlett NG, Taniguchi T, Olson S, Cox B, Waisfisz Q, et al. 2002. Science 297:606-9
135. Montes de Oca R, Andreassen PR, Margossian SP, Gregory RC, Taniguchi T, et al. 2005. Blood 105:1003-9
136. Hussain S, Wilson JB, Medhurst AL, Hejna J, Witt E, et al. 2004. Hum. Mol. Genet. 13:1241-48
137. Pichierri P, Averbeck D, Rosselli F. 2002. Hum. Mol. Genet. 11:2531-46
138. Wang XZ, Andreassen PR, D'Andrea AD. 2004. Mol. Cell. Biol. 24:5850-62
139. Levitus M, Waisfisz Q, Godthelp BC, de Vries Y, Hussain S, et al. 2005. Nat. Genet. 37:934-35
140. Levran O, Attwooll C, Henry RT, Milton KL, Neveling K, et al. 2005. Nat. Genet. 37:931-33
141. Litman R, Peng M, Jin Z, Zhang F, Zhang J, et al. 2005. Cancer Cell 8:255-65
142. Rahman N, Seal S, Thompson D, Kelly P, Renwick A, et al. 2007. Nat. Genet. 39:165-67
143. Reid S, Schindler D, Hanenberg H, Barker K, Hanks S, et al. 2007. Nat. Genet. 39:162-64
144. Xia B, Dorsman JC, Ameziane N, de Vries Y, Rooimans MA, et al. 2007. Nat. Genet. 39:159-61
145. De Silva IU, McHugh PJ, Clingen PH, Hartley JA. 2000. Mol. Cell. Biol. 20:7980-90
146. Rothfuss A, Grompe M. 2004. Mol. Cell. Biol. 24:123-34
147. Niedernhofer LJ. 2007. Mol. Cell 25:487-90
148. Pichierri P, Rosselli F. 2004. EMBO J. 23:1178-87
149. Kuraoka I, Kobertz WR, Ariza RR, Biggerstaff M, Essigmann JM, Wood RD. 2000. J. Biol. Chem. 275:26632-36
150. Niedernhofer LJ, Odijk H, Budzowska M, van Drunen E, Maas A, et al. 2004. Mol. Cell. Biol. 24:5776-87
151. Bessho T, Mu D, Sancar A. 1997. Mol. Cell. Biol. 17:6822-30
152. Collins AR. 1993. Mutat. Res. 293:99-118
153. Macé G, Bogliolo M, Guervilly JH, Dugas du Villard JA, Rosselli F. 2005. Biochimie 87:647-58
154. Sridharan D, Brown M, Lambert WC, McMahon LW, Lambert MW. 2003. J. Cell. Sci. 116:823-35