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Volumn 13, Issue 8, 2005, Pages 1183-1192

Structural and functional analyses of an archaeal XPF/Rad1/Mus81 nuclease: Asymmetric DNA binding and cleavage mechanisms

Author keywords

[No Author keywords available]

Indexed keywords

DNA; NUCLEASE; PROTEIN RAD1;

EID: 23444443484     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2005.04.024     Document Type: Article
Times cited : (50)

References (35)
  • 1
    • 0033105094 scopus 로고    scopus 로고
    • Conserved domains in DNA repair proteins and evolution of repair systems
    • L. Aravind, D.R. Walker, and E.V. Koonin Conserved domains in DNA repair proteins and evolution of repair systems Nucleic Acids Res. 27 1999 1223 1242
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1223-1242
    • Aravind, L.1    Walker, D.R.2    Koonin, E.V.3
  • 6
    • 0035679232 scopus 로고    scopus 로고
    • Recombinational DNA repair of damaged replication forks in Escherichia coli: Questions
    • M.M. Cox Recombinational DNA repair of damaged replication forks in Escherichia coli: questions Annu. Rev. Genet. 35 2001 53 82
    • (2001) Annu. Rev. Genet. , vol.35 , pp. 53-82
    • Cox, M.M.1
  • 8
    • 0029929070 scopus 로고    scopus 로고
    • The helix-hairpin-helix DNA-binding motif: A structural basis for non-sequence-specific recognition of DNA
    • A.J. Doherty, L.C. Serpell, and C.P. Ponting The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA Nucleic Acids Res. 24 1996 2488 2497
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2488-2497
    • Doherty, A.J.1    Serpell, L.C.2    Ponting, C.P.3
  • 10
    • 0347571776 scopus 로고    scopus 로고
    • Holliday junctions in the eukaryotic nucleus: Resolution in sight?
    • W.D. Heyer, K.T. Ehmsen, and J.A. Solinger Holliday junctions in the eukaryotic nucleus: resolution in sight? Trends Biochem. Sci. 28 2003 548 557
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 548-557
    • Heyer, W.D.1    Ehmsen, K.T.2    Solinger, J.A.3
  • 11
    • 0942279596 scopus 로고    scopus 로고
    • The Mus81 solution to resolution: Generating meiotic crossovers without Holliday junctions
    • N.M. Hollingsworth, and S.J. Brill The Mus81 solution to resolution: generating meiotic crossovers without Holliday junctions Genes Dev. 18 2004 117 125
    • (2004) Genes Dev. , vol.18 , pp. 117-125
    • Hollingsworth, N.M.1    Brill, S.J.2
  • 12
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • L. Holm, and C. Sander Protein structure comparison by alignment of distance matrices J. Mol. Biol. 233 1993 123 138
    • (1993) J. Mol. Biol. , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 13
    • 0033529916 scopus 로고    scopus 로고
    • A Holliday junction resolvase from Pyrococcus furiosus: Functional similarity to Escherichia coli RuvC provides evidence for conserved mechanism of homologous recombination in Bacteria, Eukarya, and Archaea
    • K. Komori, S. Sakae, H. Shinagawa, K. Morikawa, and Y. Ishino A Holliday junction resolvase from Pyrococcus furiosus: functional similarity to Escherichia coli RuvC provides evidence for conserved mechanism of homologous recombination in Bacteria, Eukarya, and Archaea Proc. Natl. Acad. Sci. USA 96 1999 8873 8878
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 8873-8878
    • Komori, K.1    Sakae, S.2    Shinagawa, H.3    Morikawa, K.4    Ishino, Y.5
  • 14
    • 0036698611 scopus 로고    scopus 로고
    • Novel endonuclease in Archaea cleaving DNA with various branched structure
    • K. Komori, R. Fujikane, H. Shinagawa, and Y. Ishino Novel endonuclease in Archaea cleaving DNA with various branched structure Genes Genet. Syst. 77 2002 227 241
    • (2002) Genes Genet. Syst. , vol.77 , pp. 227-241
    • Komori, K.1    Fujikane, R.2    Shinagawa, H.3    Ishino, Y.4
  • 15
    • 11144225798 scopus 로고    scopus 로고
    • Cooperation of the N-terminal helicase and C-terminal endonuclease activities of Archaeal Hef protein in processing stalled replication forks
    • K. Komori, M. Hidaka, T. Horiuchi, R. Fujikane, H. Shinagawa, and Y. Ishino Cooperation of the N-terminal helicase and C-terminal endonuclease activities of Archaeal Hef protein in processing stalled replication forks J. Biol. Chem. 279 2004 53175 53185
    • (2004) J. Biol. Chem. , vol.279 , pp. 53175-53185
    • Komori, K.1    Hidaka, M.2    Horiuchi, T.3    Fujikane, R.4    Shinagawa, H.5    Ishino, Y.6
  • 16
    • 0034176335 scopus 로고    scopus 로고
    • Initiation of genetic recombination and recombination-dependent replication
    • S.C. Kowalczykowski Initiation of genetic recombination and recombination-dependent replication Trends Biochem. Sci. 25 2000 156 165
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 156-165
    • Kowalczykowski, S.C.1
  • 17
    • 0034682793 scopus 로고    scopus 로고
    • A conserved nuclease domain in the archaeal Holliday junction resolving enzyme Hjc
    • M. Kvaratskhelia, B.N. Wardleworth, D.G. Norman, and M.F. White A conserved nuclease domain in the archaeal Holliday junction resolving enzyme Hjc J. Biol. Chem. 275 2000 25540 25546
    • (2000) J. Biol. Chem. , vol.275 , pp. 25540-25546
    • Kvaratskhelia, M.1    Wardleworth, B.N.2    Norman, D.G.3    White, M.F.4
  • 18
    • 0034662859 scopus 로고    scopus 로고
    • Resolving the relationships of resolving enzymes
    • D.M. Lilley, and M.F. White Resolving the relationships of resolving enzymes Proc. Natl. Acad. Sci. USA 97 2000 9351 9353
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 9351-9353
    • Lilley, D.M.1    White, M.F.2
  • 19
    • 0344198460 scopus 로고    scopus 로고
    • Perpetuating the double helix: Molecular machines at eukaryotic DNA replication origins
    • J. Mendez, and B. Stillman Perpetuating the double helix: molecular machines at eukaryotic DNA replication origins Bioessays 25 2003 1158 1167
    • (2003) Bioessays , vol.25 , pp. 1158-1167
    • Mendez, J.1    Stillman, B.2
  • 23
    • 0035081705 scopus 로고    scopus 로고
    • Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition
    • T. Nishino, K. Komori, D. Tsuchiya, Y. Ishino, and K. Morikawa Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition Structure (Camb.) 9 2001 197 204
    • (2001) Structure (Camb.) , vol.9 , pp. 197-204
    • Nishino, T.1    Komori, K.2    Tsuchiya, D.3    Ishino, Y.4    Morikawa, K.5
  • 24
    • 0035929646 scopus 로고    scopus 로고
    • Dissection of the regional roles of the archaeal Holliday junction resolvase Hjc by structural and mutational analyses
    • T. Nishino, K. Komori, Y. Ishino, and K. Morikawa Dissection of the regional roles of the archaeal Holliday junction resolvase Hjc by structural and mutational analyses J. Biol. Chem. 276 2001 35735 35740
    • (2001) J. Biol. Chem. , vol.276 , pp. 35735-35740
    • Nishino, T.1    Komori, K.2    Ishino, Y.3    Morikawa, K.4
  • 25
    • 12444336898 scopus 로고    scopus 로고
    • X-ray and biochemical anatomy of an archaeal XPF/Rad1/Mus81 family nuclease: Similarity between its endonuclease domain and restriction enzymes
    • T. Nishino, K. Komori, Y. Ishino, and K. Morikawa X-ray and biochemical anatomy of an archaeal XPF/Rad1/Mus81 family nuclease: similarity between its endonuclease domain and restriction enzymes Structure (Camb.) 11 2003 445 457
    • (2003) Structure (Camb.) , vol.11 , pp. 445-457
    • Nishino, T.1    Komori, K.2    Ishino, Y.3    Morikawa, K.4
  • 26
    • 11844252069 scopus 로고    scopus 로고
    • Crystal structure and functional implications of Pyrococcus furiosus Hef helicase domain involved in branched DNA processing
    • T. Nishino, K. Komori, D. Tsuchiya, Y. Ishino, and K. Morikawa Crystal structure and functional implications of Pyrococcus furiosus Hef helicase domain involved in branched DNA processing Structure (Camb.) 13 2005 143 153
    • (2005) Structure (Camb.) , vol.13 , pp. 143-153
    • Nishino, T.1    Komori, K.2    Tsuchiya, D.3    Ishino, Y.4    Morikawa, K.5
  • 27
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-Ray Diffraction Data Collected in Oscillation Mode
    • C.W. Carter R.M. Sweet Academic Press New York
    • Z. Otwinowski, and W. Minor Processing of X-Ray Diffraction Data Collected in Oscillation Mode C.W. Carter R.M. Sweet Methods in Enzymology 1997 Academic Press New York 307 326
    • (1997) Methods in Enzymology , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 28
    • 0030911133 scopus 로고    scopus 로고
    • Recognition and cleavage of DNA by type-II restriction endonucleases
    • A. Pingoud, and A. Jeltsch Recognition and cleavage of DNA by type-II restriction endonucleases Eur. J. Biochem. 246 1997 1 22
    • (1997) Eur. J. Biochem. , vol.246 , pp. 1-22
    • Pingoud, A.1    Jeltsch, A.2
  • 29
    • 0037772376 scopus 로고    scopus 로고
    • An archaeal XPF repair endonuclease dependent on a heterotrimeric PCNA
    • J.A. Roberts, S.D. Bell, and M.F. White An archaeal XPF repair endonuclease dependent on a heterotrimeric PCNA Mol. Microbiol. 48 2003 361 371
    • (2003) Mol. Microbiol. , vol.48 , pp. 361-371
    • Roberts, J.A.1    Bell, S.D.2    White, M.F.3
  • 30
  • 31
    • 0034661711 scopus 로고    scopus 로고
    • Common fold in helix-hairpin-helix proteins
    • X. Shao, and N.V. Grishin Common fold in helix-hairpin-helix proteins Nucleic Acids Res. 28 2000 2643 2650
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2643-2650
    • Shao, X.1    Grishin, N.V.2
  • 32
    • 0036848846 scopus 로고    scopus 로고
    • Automated structure solution, density modification and model building
    • T.C. Terwilliger Automated structure solution, density modification and model building Acta Crystallogr. D Biol. Crystallogr. 58 2002 1937 1940
    • (2002) Acta Crystallogr. D Biol. Crystallogr. , vol.58 , pp. 1937-1940
    • Terwilliger, T.C.1
  • 33
    • 0029119097 scopus 로고
    • Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure
    • M.M. Thayer, H. Ahern, D. Xing, R.P. Cunningham, and J.A. Tainer Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure EMBO J. 14 1995 4108 4120
    • (1995) EMBO J. , vol.14 , pp. 4108-4120
    • Thayer, M.M.1    Ahern, H.2    Xing, D.3    Cunningham, R.P.4    Tainer, J.A.5
  • 34
    • 0034622513 scopus 로고    scopus 로고
    • Structural basis of DNA bridging by barrier-to-autointegration factor
    • T.C. Umland, S.Q. Wei, R. Craigie, and D.R. Davies Structural basis of DNA bridging by barrier-to-autointegration factor Biochemistry 39 2000 9130 9138
    • (2000) Biochemistry , vol.39 , pp. 9130-9138
    • Umland, T.C.1    Wei, S.Q.2    Craigie, R.3    Davies, D.R.4
  • 35
    • 1842861596 scopus 로고    scopus 로고
    • Three-dimensional structural views of branch migration and resolution in DNA homologous recombination
    • K. Yamada, M. Ariyoshi, and K. Morikawa Three-dimensional structural views of branch migration and resolution in DNA homologous recombination Curr. Opin. Struct. Biol. 14 2004 130 137
    • (2004) Curr. Opin. Struct. Biol. , vol.14 , pp. 130-137
    • Yamada, K.1    Ariyoshi, M.2    Morikawa, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.