The helix-hairpin-helix DNA-binding motif: A structural basis for non-sequence-specific recognition of DNA

Nucleic Acids Research

Volumn 24, Issue 13, 1996, Pages 2488-2497

  Doherty, Aidan J ^a   Serpell, Louise C ^a   Ponting, Christopher P ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA BINDING PROTEIN; DNA DIRECTED DNA POLYMERASE BETA; ENDONUCLEASE; HELIX LOOP HELIX PROTEIN; RESTRICTION ENDONUCLEASE;

ARTICLE; BINDING SITE; CRYSTAL STRUCTURE; DATA BASE; HERPES VIRUS; HYDROGEN BOND; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DNA BINDING; PROTEIN FAMILY; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; DATABASES, FACTUAL; DEOXYRIBONUCLEASE (PYRIMIDINE DIMER); DNA; DNA GLYCOSYLASES; DNA POLYMERASE I; DNA-BINDING PROTEINS; ENDODEOXYRIBONUCLEASES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; N-GLYCOSYL HYDROLASES; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

HERPES; HERPESVIRIDAE;

EID: 0029929070     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/24.13.2488     Document Type: Article

References (47)

1. Harrison, S.C. (1991) Nature 353, 715-719.
2. Doherty, A.J., Worrall, A.F. and Connolly, B.A. (1995) J. Mol. Biol. 251, 366-377.
3. Ponting, C.P. and Kerr, I.D. (1996) Protein Sci. 5, 914-922.
4. Inamine, G.S. and Dubnau, D. (1995) J. Bacteriol. 177, 3045-3051.
5. Doolittle, R.F. (1994) Trends Biochem. Sci. 19, 15-18.
6. Barton, G.J. (1993) Comput. Appl. Biosci. 8, 729-734.
7. Gibson, T.J., Hyvönen, M., Musacchio, A., Saraste, M. and Birney, E. (1994) Trends Biochem. Sci. 19, 349-353.
8. Altschul, S.F., Boguski, M.S., Gish, W. and Wootton, J.C. (1994) Nature Genet, 6, 119-129.
9. Schuler, G.D., Altschul, S.F. and Lipman, D.J. (1991) Proteins Struct. Funct. Genet. 9, 180-190.
10. Henikoff, S. and Henikoff, J.G. (1992) Proc. Natl Acad. Sci. USA 89, 10915-10919.
11. Rost, B. and Sander, C. (1993) J. Mol. Biol. 232, 584-599.
12. Russell, R.B. and Barton, G.J. (1992) Proteins Struct. Fuct. Genet. 14, 309-323.
13. Sayle, R.A. and Milnerwhite, E.J. (1995) Trends Biochem. Sci. 20, 374-376.
14. Pelletier, H., Sawaya M.R., Kumar, A., Wilson, S.H. and Kraut, J. (1994) Science 264, 1891-1903.
15. Kim, Y., Eom, S.H., Wang, J., Lee, D-S., Suh, S.W. and Steitz, T.A. (1995) Nature 376, 612-616.
16. Kuo, C.-F., McRee, D.E.., Fisher, C.L., Cunningham, R.P. and Tainer, J.A. (1992) Science 258, 434-440.
17. Efimov, A.V. (1991) Protein Eng., 4, 245-250.
18. Thayer, M.M., Ahern, H., Xing, D., Cunningham, R.P. and Tainer J.A. (1995) EMBO J. 14, 4108-4120.
19. Seeberg, E., Eide, L. and Bjoras, M. (1995) Trends Biol. Sci 20, 391-397.
20. Saraste, M., Sibbald, P.R. and Wittinghofer, A. (1990) Trends Biochem. Sci 15, 430-434.
21. Bossemeyer, D. (1994) Trends Biochem. Sci. 19, 201-205.
22. Gutman, P.D. and Minton, K.W. (1993) Nucleic Acids Res. 21, 4406-4407.
23. Joyce, C.M., Fujii, D.M., Laks, H.S., Hughes, C.M. and Grindley, N.D.F. (1985) J. Mol. Biol. 186, 283-293.
24. Ishino, Y., Takahashi-fugi, A., Uemori, T., Imamura, M., Kato, I. and Doi, H. (1995) Protein Eng., 8, 1171-1175.
25. Harrison, S.C. and Aggarwal, A.K. (1990) Annu. Rev. Biochem. 59, 933-969.
26. Singhal, R. and Wilson, S. (1993) J. Biol. Chem. 268, 15906-15911.
27. Prasad, R., Beard, W.A. and Wilson, S.H. (1994) J. Biol. Chem. 269, 18096-18101.
28. Sawaya, M.R., Pelletier, H., Kumar, A., Wilson, S.H. and Kraut, J. (1994) Science 264, 1930-1935.
29. Kumar, A., Widen, S.G., Williams, K.R., Kedar, P., Karpel, R.L. and Wilson, S.H. (1990) J. Biol. Chem. 265, 2124-2131.
30. Liu, D., DeRose, E.F., Prasad, R, Wilson, S.H. and Mullen, G.P. (1994) Biochemistry 33, 9537-9545.
31. Basu, A., Kedar, P, Wilson, S.H. and Modak, M.J. (1989) Biochemistry 28, 6305-6309.
32. Farrar, Y.J.K., Evans, R.K., Beach, C.M. and Coleman, M. (1991) Biochemistry 30, 3075-3082.
33. Pandey,V.N. and Modak, M.J. (1988) J. Biol. Chem. 263, 3744-3751.
34. Husain, I., Morton, B.S., Beard, W.A., Singhal, R.K., Prasad, R., Wilson, S.H. and Besterman, J.M. (1995) Nucleic Acids Res. 23, 1597-1603.
35. Sayers, J.S. and Eckstein, F. (1991) Nucleic Acids Res. 19, 4127-4132.
36. Harrington, J.J. and Lieber, M.R. (1994) Genes Dev. 8, 1344-1355.
37. Robins, P., Pappin, D.J.C., Wood, R.D. and Lindahl, T. (1994) J. Biol. Chem. 269, 28535-28538.
38. Pak, A.S., Everly, D.N., Knight, K. and Read, G.S. (1995) Virology 211, 491-506.
39. Hollingsworth, H.C. and Nossal, N.G. (1991) J. Biol. Chem. 266, 1888-1897.
40. Carpenter, A.T.C. (1973) Genetics 73, 393-428.
41. Afshar, K., Barton, N.R., Hawley, R.S. and Goldstein, L.S.B. (1995) Cell 81, 129-138.
42. Afshar, K., Scholey, J. and Hawley, R.S. (1995) J. Cell Biol. 131, 833-843.
43. Rasooly, R., Zhang, P., Tibolla, A.K. and Hawley, R.S. (1994) Mol. Gen. Genet. 242, 145-151.
44. Zubay, G. and Doly, P.J. (1959) J. Mol. Biol. 7, 1-10.
45. Barton, G.J. (1993) Protein Eng., 6, 37-40.
46. Berthomme, H., Jacquemont, B. and Epstein, A. (1993) Virology 193, 1028-1032.
47. Nishiwaki, K., Sano, T. and Miwa, J. (1993) Mol. Gen. Genet. 239, 313-322.