-
1
-
-
33947356279
-
G protein coupled receptor structure and activation
-
Kobilka, B. K. 2007. G protein coupled receptor structure and activation. Biochim. Biophys. Acta. 1768:794-807.
-
(2007)
Biochim. Biophys. Acta
, vol.1768
, pp. 794-807
-
-
Kobilka, B.K.1
-
2
-
-
0037285444
-
Rhodopsin structure, dynamics, and activation: A perspective from crystallography, site-directed spin labeling, sulfhydryl reactivity, and disulfide cross-linking
-
Hubbell, W. L., C. Altenbach, C. M. Hubbell, and H. G. Khorana. 2003. Rhodopsin structure, dynamics, and activation: a perspective from crystallography, site-directed spin labeling, sulfhydryl reactivity, and disulfide cross-linking. Adv. Protein Chem. 63:243-290.
-
(2003)
Adv. Protein Chem
, vol.63
, pp. 243-290
-
-
Hubbell, W.L.1
Altenbach, C.2
Hubbell, C.M.3
Khorana, H.G.4
-
3
-
-
3543080493
-
The state of GPCR research in 2004
-
Bartfai, T., J. Benovic, J. Bockaert, R. A. Bond, M. Bouvier, A. Christopoulos, O. Civelli, L. A. Devi, S. R. George, A. Inui, B. K. Kobilka, R. Leurs, R. Neubig, J.-P. Pin, R. Quirion, B. P. Roques, T. P. Sakmar, R. Seifert, R. E. Stenkamp, and P. G. Strange. 2004. The state of GPCR research in 2004. Nat. Rev. Drug Discov. 3:577-626.
-
(2004)
Nat. Rev. Drug Discov
, vol.3
, pp. 577-626
-
-
Bartfai, T.1
Benovic, J.2
Bockaert, J.3
Bond, R.A.4
Bouvier, M.5
Christopoulos, A.6
Civelli, O.7
Devi, L.A.8
George, S.R.9
Inui, A.10
Kobilka, B.K.11
Leurs, R.12
Neubig, R.13
Pin, J.-P.14
Quirion, R.15
Roques, B.P.16
Sakmar, T.P.17
Seifert, R.18
Stenkamp, R.E.19
Strange, P.G.20
more..
-
7
-
-
0030611331
-
-
2-Adrenergic Receptor Alters the Orientation of Its Sixth Membrane-spanning Segment. J. Biol. Chem. 272:1854618549.
-
2-Adrenergic Receptor Alters the Orientation of Its Sixth Membrane-spanning Segment. J. Biol. Chem. 272:1854618549.
-
-
-
-
8
-
-
0033061256
-
2-adrenergic receptor: Constitutive activation, structural instability, and conformational rearrangement of transmembrane segment 6
-
2-adrenergic receptor: constitutive activation, structural instability, and conformational rearrangement of transmembrane segment 6. Mol. Pharmacol. 56:175-184.
-
(1999)
Mol. Pharmacol
, vol.56
, pp. 175-184
-
-
Rasmussen, S.G.F.1
Jensen, A.D.2
Liapakis, G.3
Ghanouni, P.4
Javitch, J.A.5
Gether, U.6
-
12
-
-
29444444012
-
Molecular basis of inverse agonism in a G protein-coupled receptor
-
Vilardaga, J.-P., R. Steinmeyer, G. S. Harms, and M. J. Lohse. 2005. Molecular basis of inverse agonism in a G protein-coupled receptor. Nat. Chem. Biol. 1:25-28.
-
(2005)
Nat. Chem. Biol
, vol.1
, pp. 25-28
-
-
Vilardaga, J.-P.1
Steinmeyer, R.2
Harms, G.S.3
Lohse, M.J.4
-
15
-
-
0036965731
-
Structural basis for activation of G-protein-coupled receptors
-
Gether, U., F. Asmar, A. K. Meinild, and S. G. F. Rasmussen. 2002. Structural basis for activation of G-protein-coupled receptors. Pharmacol. Toxicol. 91:304-312.
-
(2002)
Pharmacol. Toxicol
, vol.91
, pp. 304-312
-
-
Gether, U.1
Asmar, F.2
Meinild, A.K.3
Rasmussen, S.G.F.4
-
19
-
-
0028289513
-
Structure and function of G protein-coupled receptors
-
Strader, C. D., T. M. Fong, M. R. Tota, D. Underwood, and R. A. Dixon. 1994. Structure and function of G protein-coupled receptors. Annu. Rev. Biochem. 63:101-132.
-
(1994)
Annu. Rev. Biochem
, vol.63
, pp. 101-132
-
-
Strader, C.D.1
Fong, T.M.2
Tota, M.R.3
Underwood, D.4
Dixon, R.A.5
-
20
-
-
0023173659
-
-
2- adrenergic-receptor involves its rhodopsin-like core. Nature. 326:73-77.
-
2- adrenergic-receptor involves its rhodopsin-like core. Nature. 326:73-77.
-
-
-
-
21
-
-
0023447821
-
-
Dixon, R. A. F., I. S. Sigal, M. R. Cadelore, R. B. Register, W. Scattergood, E. Rands, and C. D. Strader. 1987. Structural features required for ligand binding to the β adrenergic receptor. EMBO J. 6:3269-3275.
-
Dixon, R. A. F., I. S. Sigal, M. R. Cadelore, R. B. Register, W. Scattergood, E. Rands, and C. D. Strader. 1987. Structural features required for ligand binding to the β adrenergic receptor. EMBO J. 6:3269-3275.
-
-
-
-
23
-
-
0033555936
-
Conformational changes in rhodopsin. Movement of helix F detected by site-specific chemical labeling and fluorescence spectroscopy
-
Dunham, T. D., and D. L. Farrens. 1999. Conformational changes in rhodopsin. Movement of helix F detected by site-specific chemical labeling and fluorescence spectroscopy. J. Biol. Chem. 274:1683-1690.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 1683-1690
-
-
Dunham, T.D.1
Farrens, D.L.2
-
25
-
-
0037127315
-
3muscarinic acetylcholine receptor activation probed by the use of an in situ disulfide cross-linking strategy
-
3muscarinic acetylcholine receptor activation probed by the use of an in situ disulfide cross-linking strategy. J. Biol. Chem. 277:2247-2257.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 2247-2257
-
-
Ward, S.D.C.1
Hamdan, F.F.2
Bloodworth, L.M.3
Wess, J.4
-
26
-
-
0029907599
-
Requirement of rigid-body motion of transmembrane helices for light activation of rhodopsin
-
Farrens, D., C. Altenbach, K. Yang, W. Hubbell, and H. G. Khorana. 1996. Requirement of rigid-body motion of transmembrane helices for light activation of rhodopsin. Science. 274:768-770.
-
(1996)
Science
, vol.274
, pp. 768-770
-
-
Farrens, D.1
Altenbach, C.2
Yang, K.3
Hubbell, W.4
Khorana, H.G.5
-
27
-
-
0035951062
-
Structure and function in rhodopsin: Mapping light-dependent changes in distance between residue 316 in helix 8 and residues in the sequence 60-75, covering the cytoplasmic end of helices TM1 and TM2 and their connection loop CL1
-
Altenbach, C., J. Klein-Seetharaman, K. Cai, H. G. Khorana, and W. L. Hubbell. 2001. Structure and function in rhodopsin: mapping light-dependent changes in distance between residue 316 in helix 8 and residues in the sequence 60-75, covering the cytoplasmic end of helices TM1 and TM2 and their connection loop CL1. Biochemistry. 40:15493-15500.
-
(2001)
Biochemistry
, vol.40
, pp. 15493-15500
-
-
Altenbach, C.1
Klein-Seetharaman, J.2
Cai, K.3
Khorana, H.G.4
Hubbell, W.L.5
-
28
-
-
0033594981
-
Structural features and light-dependent changes in the sequence 59-75 connecting helices I and II in rhodopsin: A sitedirected spin-labeling study
-
Altenbach, C., J. Klein-Seetharaman, J. Hwa, H. G. Khorana, and W. L. Hubbell. 1999. Structural features and light-dependent changes in the sequence 59-75 connecting helices I and II in rhodopsin: a sitedirected spin-labeling study. Biochemistry. 38:7945-7949.
-
(1999)
Biochemistry
, vol.38
, pp. 7945-7949
-
-
Altenbach, C.1
Klein-Seetharaman, J.2
Hwa, J.3
Khorana, H.G.4
Hubbell, W.L.5
-
29
-
-
0033594988
-
Structural features and light-dependent changes in the sequence 306-322 extending from helix VII to the palmitoylation sites in rhodopsin: A site-directed spin-labeling study
-
Altenbach, C., K. Cai, H. G. Khorana, and W. L. Hubbell. 1999. Structural features and light-dependent changes in the sequence 306-322 extending from helix VII to the palmitoylation sites in rhodopsin: a site-directed spin-labeling study. Biochemistry. 38:7931-7937.
-
(1999)
Biochemistry
, vol.38
, pp. 7931-7937
-
-
Altenbach, C.1
Cai, K.2
Khorana, H.G.3
Hubbell, W.L.4
-
30
-
-
23044486642
-
Structure of rhodopsin and the metarhodopsin I photointermediate
-
Schertler, G. F. 2005. Structure of rhodopsin and the metarhodopsin I photointermediate. Curr. Opin. Struct. Biol. 15:408-415.
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 408-415
-
-
Schertler, G.F.1
-
32
-
-
0642306488
-
Phototransduction: Crystal clear
-
Ridge, K. D., N. G. Abdulaev, M. Sousa, and K. Palczewski. 2003. Phototransduction: crystal clear. Trends Biochem. Sci. 28:479-487.
-
(2003)
Trends Biochem. Sci
, vol.28
, pp. 479-487
-
-
Ridge, K.D.1
Abdulaev, N.G.2
Sousa, M.3
Palczewski, K.4
-
33
-
-
0028061193
-
A conserved carboxylic acid group mediates light-dependent proton uptake and signaling by rhodopsin
-
Arnis, S., K. Fahmy, K. P. Hofmann, and T. P. Sakmar. 1994. A conserved carboxylic acid group mediates light-dependent proton uptake and signaling by rhodopsin. J. Biol. Chem. 269:23879-23881.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 23879-23881
-
-
Arnis, S.1
Fahmy, K.2
Hofmann, K.P.3
Sakmar, T.P.4
-
34
-
-
0037062583
-
Structural studies of metarhodopsin II, the activated form of the G-protein coupled receptor, rhodopsin
-
Choi, G., J. Landin, J. F. Galan, R. R. Birge, A. D. Albert, and P. L. Yeagle. 2002. Structural studies of metarhodopsin II, the activated form of the G-protein coupled receptor, rhodopsin. Biochemistry. 41:7318-7324.
-
(2002)
Biochemistry
, vol.41
, pp. 7318-7324
-
-
Choi, G.1
Landin, J.2
Galan, J.F.3
Birge, R.R.4
Albert, A.D.5
Yeagle, P.L.6
-
35
-
-
33750836895
-
Crystal structure of a photoactivated deprotonated intermediate of rhodopsin
-
Salom, D., D. T. Lodowski, R. E. Stenkamp, I. Le Trong, M. Golczak, B. Jastrzebska, T. Harris, J. A. Ballesteros, and K. Palczewski. 2006. Crystal structure of a photoactivated deprotonated intermediate of rhodopsin. Proc. Natl. Acad. Sci. USA. 103:16123-16128.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 16123-16128
-
-
Salom, D.1
Lodowski, D.T.2
Stenkamp, R.E.3
Le Trong, I.4
Golczak, M.5
Jastrzebska, B.6
Harris, T.7
Ballesteros, J.A.8
Palczewski, K.9
-
36
-
-
0842344300
-
2-adrenergic receptor
-
2-adrenergic receptor. Proteins. 56:67-84.
-
(2004)
Proteins
, vol.56
, pp. 67-84
-
-
Gouldson, P.R.1
Kidley, N.J.2
Bywater, R.P.3
Psaroudakis, G.4
Brooks, H.D.5
Diaz, C.6
Shire, D.7
Reyenolds, C.A.8
-
37
-
-
33646419576
-
3D Modeling of the activated states of constitutively active mutants of rhodopsin
-
Nikiforovich, G. V., and G. R. Marshall. 2006. 3D Modeling of the activated states of constitutively active mutants of rhodopsin. Biochem. Biophys. Res. Commun. 345:430-437.
-
(2006)
Biochem. Biophys. Res. Commun
, vol.345
, pp. 430-437
-
-
Nikiforovich, G.V.1
Marshall, G.R.2
-
38
-
-
33845903110
-
Functional selectivity and classical concepts of quantitative pharmacology
-
Urban, J. D., W. P. Clarke, M. von Zastrow, D. E. Nichols, B. K. Kobilka, H. Weinstein, J. A. Javitch, B. L. Roth, A. Christopoulos, P. M. Sexton, K. J. Miller, M. Spedding, and R. B. Mailman. 2007. Functional selectivity and classical concepts of quantitative pharmacology. J. Pharmacol. Exp. Ther. 320:1-13.
-
(2007)
J. Pharmacol. Exp. Ther
, vol.320
, pp. 1-13
-
-
Urban, J.D.1
Clarke, W.P.2
von Zastrow, M.3
Nichols, D.E.4
Kobilka, B.K.5
Weinstein, H.6
Javitch, J.A.7
Roth, B.L.8
Christopoulos, A.9
Sexton, P.M.10
Miller, K.J.11
Spedding, M.12
Mailman, R.B.13
-
39
-
-
34249981222
-
Determining membrane protein structures: Still a challenge!
-
Lacapère, J.-J., E. Pebay-Peyroula, J.-M. Neumann, and C. Etchebest. 2003. Determining membrane protein structures: still a challenge! Trends Biochem. Sci. 32:259-270.
-
(2003)
Trends Biochem. Sci
, vol.32
, pp. 259-270
-
-
Lacapère, J.-J.1
Pebay-Peyroula, E.2
Neumann, J.-M.3
Etchebest, C.4
-
40
-
-
0141927102
-
Molecular dynamics simulation of dark-adapted rhodopsin in an explicit membrane bilayer: Coupling between local retinal and larger scale conformational change
-
Crozier, P. S., M. J. Stevens, L. R. Forrest, and T. B. Woolf. 2003. Molecular dynamics simulation of dark-adapted rhodopsin in an explicit membrane bilayer: coupling between local retinal and larger scale conformational change. J. Mol. Biol. 333:493-514.
-
(2003)
J. Mol. Biol
, vol.333
, pp. 493-514
-
-
Crozier, P.S.1
Stevens, M.J.2
Forrest, L.R.3
Woolf, T.B.4
-
41
-
-
33645498334
-
-
2- adrenergic receptor, embedded in the membrane with bound agonist or antagonist. Proc. Natl. Acad. Sci. USA. 103:4882-4887.
-
2- adrenergic receptor, embedded in the membrane with bound agonist or antagonist. Proc. Natl. Acad. Sci. USA. 103:4882-4887.
-
-
-
-
42
-
-
34548622408
-
Dopamine D1 receptor agonist and D2 receptor antagonist effects of the natural product (-)-stepholidine (SPD): Molecular modeling and dynamics simulations
-
Fu, W., J. Shen, X. Luo, W. Zhu, J. Cheng, K. Yu, J. M. Briggs, G. Jin, K. Chen, and H. Jiang. 2007. Dopamine D1 receptor agonist and D2 receptor antagonist effects of the natural product (-)-stepholidine (SPD): molecular modeling and dynamics simulations. Biophys. J. 93:1431-1441.
-
(2007)
Biophys. J
, vol.93
, pp. 1431-1441
-
-
Fu, W.1
Shen, J.2
Luo, X.3
Zhu, W.4
Cheng, J.5
Yu, K.6
Briggs, J.M.7
Jin, G.8
Chen, K.9
Jiang, H.10
-
43
-
-
0042511005
-
A graph-theory algorithm for rapid protein side-chain prediction
-
Canutescu, A. A., A. A. Shelenkov, and R. L. Dunbrack, Jr. 2003. A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci. 12:2001-2014.
-
(2003)
Protein Sci
, vol.12
, pp. 2001-2014
-
-
Canutescu, A.A.1
Shelenkov, A.A.2
Dunbrack Jr., R.L.3
-
45
-
-
0028304962
-
Satisfying hydrogen bonding potential in proteins
-
McDonald, I. K., and J. M. Thornton. 1994. Satisfying hydrogen bonding potential in proteins. J. Mol. Biol. 238:777-793.
-
(1994)
J. Mol. Biol
, vol.238
, pp. 777-793
-
-
McDonald, I.K.1
Thornton, J.M.2
-
46
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips, J. C., R. Braun, W. Wang, J. Gumbart, E. Tajkhorshid, E. Villa, C. Chipot, R. D. Skeel, L. Kale, and K. Schulten. 2005. Scalable molecular dynamics with NAMD. J. Comput. Chem. 26:1781-1802.
-
(2005)
J. Comput. Chem
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
47
-
-
0001546375
-
-
Lim, K.-T., S. Brunett, M. Iotov, R. B. McClurg, N. Vaidehi, S. Dasgupta, S. Taylor, and W. A. Goddard 3rd. 1997. Molecular dynamics for very large systems on massively parallel computers: the MPSim program. J. Comput. Chem. 18:501-521.
-
Lim, K.-T., S. Brunett, M. Iotov, R. B. McClurg, N. Vaidehi, S. Dasgupta, S. Taylor, and W. A. Goddard 3rd. 1997. Molecular dynamics for very large systems on massively parallel computers: the MPSim program. J. Comput. Chem. 18:501-521.
-
-
-
-
48
-
-
85031351968
-
-
Reference deleted in proof
-
Reference deleted in proof.
-
-
-
-
50
-
-
16644373208
-
-
Floriano, W. B., N. Vaidehi, and W. A. Goddard 3rd. 2004. Making sense of olfaction through predictions of the 3-D structure and function of olfactory receptor. Chem. Senses. 29:269-290.
-
Floriano, W. B., N. Vaidehi, and W. A. Goddard 3rd. 2004. Making sense of olfaction through predictions of the 3-D structure and function of olfactory receptor. Chem. Senses. 29:269-290.
-
-
-
-
51
-
-
0036790954
-
-
Vaidehi, N., W. B. Floriano, R. Trabanino, S. Hall, P. Freddolino, E. J. Choi, G. Zamanakos, and W. A. Goddard 3rd. 2002. Structure and function prediction for G-protein coupled receptors. Proc. Natl. Acad. Sci. USA. 99:12622-12627.
-
Vaidehi, N., W. B. Floriano, R. Trabanino, S. Hall, P. Freddolino, E. J. Choi, G. Zamanakos, and W. A. Goddard 3rd. 2002. Structure and function prediction for G-protein coupled receptors. Proc. Natl. Acad. Sci. USA. 99:12622-12627.
-
-
-
-
52
-
-
33750124980
-
Extra precision glide: Docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes
-
Friesner, R. A., R. B. Murphy, M. P. Repasky, L. L. Frye, J. R. Greenwood, T. A. Halgren, P. C. Sanschagrin, and D. T. Mainz. 2006. Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes. J. Med. Chem. 49:6177-6196.
-
(2006)
J. Med. Chem
, vol.49
, pp. 6177-6196
-
-
Friesner, R.A.1
Murphy, R.B.2
Repasky, M.P.3
Frye, L.L.4
Greenwood, J.R.5
Halgren, T.A.6
Sanschagrin, P.C.7
Mainz, D.T.8
-
56
-
-
0035866516
-
2-adrenergic receptor interacts directly with the pharmacophore of a unique fluorenone based antagonist
-
2-adrenergic receptor interacts directly with the pharmacophore of a unique fluorenone based antagonist. Biochem. J. 354:485-491.
-
(2001)
Biochem. J
, vol.354
, pp. 485-491
-
-
Zongren, W.1
Thiriot, D.S.2
Ruoho, A.E.3
-
58
-
-
34447633368
-
Conformational complexity of G-protein-coupled receptors
-
Kobilka, B. K., and X. Deupi. 2007. Conformational complexity of G-protein-coupled receptors. Trends Pharmacol. Sci. 28:397-406.
-
(2007)
Trends Pharmacol. Sci
, vol.28
, pp. 397-406
-
-
Kobilka, B.K.1
Deupi, X.2
|