Manipulation and analysis of polyketide Synthases

Methods in Enzymology

Volumn 388, Issue , 2004, Pages 269-293

  Kumar, Pawan ^a   Khosla, Chaitan ^a   Tang, Yi ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

POLYKETIDE; POLYKETIDE SYNTHASE;

ARTICLE; BIOSYNTHESIS; BIOTECHNOLOGY; CHEMICAL REACTION; DRUG SYNTHESIS; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME ASSAY; ENZYME ENGINEERING; ENZYME PURIFICATION; ESCHERICHIA COLI; EXPRESSION VECTOR; GENE EXPRESSION; GENE VECTOR; MOLECULAR CLONING; MOLECULAR EVOLUTION; PHYSICAL CHEMISTRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN PURIFICATION; REACTION ANALYSIS; STREPTOMYCES; STREPTOMYCES LIVIDANS;

AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; CONSERVED SEQUENCE; ESCHERICHIA COLI; KINETICS; POLYKETIDE SYNTHASES; PROTEIN ENGINEERING; RECOMBINANT PROTEINS; RESTRICTION MAPPING; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; SUBSTRATE SPECIFICITY;

ESCHERICHIA COLI; STREPTOMYCES; STREPTOMYCES LIVIDANS; VECTORS;

EID: 4043122568     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(04)88023-6     Document Type: Article

References (78)

1. O'Hagan D. "The Polyketide Metabolites." 1991;Ellis Howard, Chichester, UK
2. Donadio S., Staver M.J., McAlpine J.B., Swanson S.J., Katz L. Science. 252:1991;675
3. Aparicio J.F., Molnar I., Schwecke T., Konig A., Haydock S.F., Khaw L.E., Staunton J., Leadlay P.F. Gene. 169:1996;9
4. Motamedi H., Shafiee A. Eur. J. Biochem. 256:1998;528
5. Xue Y., Zhao L., Liu H.W., Sherman D.H. Proc. Natl. Acad. Sci. USA. 95:1998;12111
6. Gandecha A.R., Large S.L., Cundliffe E. Gene. 184:1997;197
7. Cortes J., Haydock S.F., Roberts G.A., Bevitt D.J., Leadlay P.F. Nature. 348:1990;176
8. Cane D.E., Walsh C.T., Khosla C. Science. 282:1998;63
9. Khosla C. Chem. Rev. 97:1997;2577
10. Rawlings B.J. Nature Prod. Rep. 14:1997;523
11. Khosla C., Gokhale R.S., Jacobsen J.R., Cane D.E. Annu. Rev. Biochem. 68:1999;219
12. Hopwood D., et al. "Genetic Manipulation of Streptomyces: A Laboratory Manual." 1985;The John Innes Foundation, Norwich
13. Cortes J., Wiesmann K.E., Roberts G.A., Brown M.J., Staunton J., Leadlay P.F. Science. 268:1995;1487
14. Weber J.M., Leung J.O., Swanson S.J., Idler K.B., McAlpine J.B. Science. 252:1991;114
15. Oliynyk M., Brown M.J., Cortes J., Staunton J., Leadlay P.F. Chem. Biol. 3:1996;833
16. Stassi D.L., et al. Proc. Natl. Acad. Sci. USA. 95:1998;7305
17. Kuhstoss S., Huber M., Turner J.R., Paschal J.W., Rao R.N. Gene. 183:1996;231
18. Ikeda H., Nonomiya T., Usami M., Ohta T., Omura S. Proc. Natl. Acad. Sci. USA. 96:1999;9509
19. Marsden A.F., Wilkinson B., Cortes J., Dunster N.J., Staunton J., Leadlay P.F. Science. 279:1998;199
20. Pacey M.S., et al. J. Antibiot. (Tokyo). 51:1998;1029
21. Ruan X., et al. J. Bacteriol. 179:1997;6416
22. Reeves C.D., Chung L.M., Liu Y., Xue Q., Carney J.R., Revill W.P., Katz L. J. Biol. Chem. 277:2002;9155
23. McDaniel R., Ebert-Khosla S., Hopwood D.A., Khosla C. Science. 262:1993;1546
24. Fernandez-Moreno M.A., Caballero J.L., Hopwood D.A., Malpartida F. Cell. 66:1991;769
25. Bentley S.D., et al. Nature. 417:2002;141
26. McDaniel R., Ebert-Khosla S., Hopwood D.A., Khosla C. Nature. 375:1995;549
27. Ziermann R., Betlach M.C. Biotechniques. 26:1999;106
28. Rowe C.J., Cortes J., Gaisser S., Staunton J., Leadlay P.F. Gene. 216:1998;215
29. Long P.F., et al. Mol. Microbiol. 43:2002;1215
30. Yoon Y.J., Beck B.J., Kim B.S., Kang H.Y., Reynolds K.A., Sherman D.H. Chem. Biol. 9:2002;203
31. Hu Z., Hunziker D., Hutchinson C.R., Khosla C. Microbiology. 145:1999;2335
32. Kato Y., Bai L., Xue Q., Revill W.P., Yu T.W., Floss H.G. J. Am. Chem. Soc. 124:2002;5268
33. Reid R., Piagentini M., Rodriguez E., Ashley G., Viswanathan N., Carney J., Santi D.V., Hutchinson C.R., McDaniel R. Biochemistry. 42:2003;72
34. Xue Q., Ashley G., Hutchinson C.R., Santi D.V. Proc. Natl. Acad. Sci. USA. 96:1999;11740
35. McDaniel R., Thamchaipenet A., Gustafsson C., Fu H., Betlach M., Ashley G. Proc. Natl. Acad. Sci. USA. 96:1999;1846
36. Kao C.M., Luo G., Katz L., Cane D.E., Khosla C. J. Am. Chem. Soc. 116:1994;11612
37. Kao C.M., Katz L., Khosla C. Science. 265:1994;509
38. Hamilton C.M., Aldea M., Washburn B.K., Babitzke P., Kushner S.R. J. Bacteriol. 171:1989;4617
39. Kao C.M., Luo G., Kao C.M., Cane D.E., Khosla C. J. Am. Chem. Soc. 117:1995;9105
40. Haller T., Buckel T., Retey J., Gerlt J.A. Biochemistry. 39:2000;4622
41. Simoni R.D., Criddle R.S., Stumpf P.K. J. Biol. Chem. 242:1967;573
42. Vanaman T.C., Wakil S.J., Hill R.L. J. Biol. Chem. 243:1968;6420
43. Elovson J., Vagelos P.R. J. Biol. Chem. 243:1968;3603
44. Lambalot R.H., Gehring A.M., Flugel R.S., Zuber P., LaCelle M., Marahiel M.A., Reid R., Khosla C., Walsh C.T. Chem. Biol. 3:1996;923
45. Pfeifer B.A., Admiraal S.J., Gramajo H., Cane D.E., Khosla C. Science. 291:2001;1790
46. Gokhale R.S., Tsuji S.Y., Cane D.E., Khosla C. Science. 284:1999;482
47. Gokhale R.S., Hunziker D., Cane D.E., Khosla C. Chem. Biol. 6:1999;117
48. Lau J., Cane D.E., Khosla C. Biochemistry. 39:2000;10514
49. Tsuji S.Y., Cane D.E., Khosla C. Biochemistry. 40:2001;2326
50. Admiraal S.J., Walsh C.T., Khosla C. Biochemistry. 40:2001;6116
51. Wu N., Tsuji S.Y., Cane D.E., Khosla C. J. Am. Chem. Soc. 123:2001;6465
52. Tsai S.C., Miercke L.J., Krucinski J., Gokhale R., Chen J.C., Foster P.G., Cane D.E., Khosla C., Stroud R.M. Proc. Natl. Acad. Sci. USA. 98:2001;14808
53. Wu N., Cane D.E., Khosla C. Biochemistry. 41:2002;5056
54. Lu H., Tsai S.C., Khosla C., Cane D.E. Biochemistry. 41:2002;12590
55. Liou G.F., Lau J., Cane D.E., Khosla C. Biochemistry. 42:2003;200
56. Boddy C.N., Schneider T.L., Hotta K., Walsh C.T., Khosla C. J. Am. Chem. Soc. 125:2003;3428
57. Kumar P., Li Q., Cane D.E., Khosla C. J. Am. Chem. Soc. 125:2003;4097
58. Hans M., Hornung A., Dziarnowski A., Cane D.E., Khosla C. J. Am. Chem. Soc. 125:2003;5366
59. Watanabe K., Wang C.C., Boddy C.N., Cane D.E., Khosla C. J. Biol. Chem. 2003
60. Watanabe K., Rude M.A., Walsh C.T., Khosla C. Proc. Natl. Acad. Sci. USA. 100:2003;9774
61. Donadio S., Katz L. Gene. 111:1992;51
62. Rawlings B.J. Nature Prod. Rep. 16:1999;425
63. McDaniel R., Kao C.M., Fu H., Hevezi P., Gustafsson C., Betlach M., Ashley G., Cane D.E., Khosla C. J. Am. Chem. Soc. 119:1997;4309
64. McDaniel R., Kao C.M., Hwang S.J., Khosla C. Chem. Biol. 4:1997;667
65. Kao C.M., McPherson M., McDaniel R., Fu H., Cane D.E., Khosla C. J. Am. Chem. Soc. 120:1998;2478
66. Kao C.M., McDaniel R., McDaniel R., Fu H., Cane D., Khosla C. J. Am. Chem. Soc. 119:1997;11339
67. Bedford D., Jacobsen J.R., Luo G., Cane D.E., Khosla C. Chem. Biol. 3:1996;827
68. Liu L., Thamchaipenet A., Fu H., Betlach M., Ashley G. J. Am. Chem. Soc. 119:1997;10553
69. Donadio S., McAlpine J.B., Sheldon P.J., Jackson M., Katz L. Proc. Natl. Acad. Sci. USA. 90:1993;7119
70. Reeves C.D., Murli S., Ashley G.W., Piagentini M., Hutchinson C.R., McDaniel R. Biochemistry. 40:2001;15464
71. Kumar P., Koppisch A.T., Cane D.E., Khosla C. J. Am. Chem. Soc. 125:2003;14307
72. Gokhale R.S., Khosla C. Curr. Opin. Chem. Biol. 4:2000;22
73. Chuck J.A., McPherson M., Huang H., Jacobsen J.R., Khosla C., Cane D.E. Chem. Biol. 4:1997;757
74. Pieper R., Ebert-Khosla S., Cane D., Khosla C. Biochemistry. 35:1996;2054
75. Pieper R., Gokhale R.S., Luo G., Cane D.E., Khosla C. Biochemistry. 36:1997;1846
76. Lau J., Fu H., Cane D.E., Khosla C. Biochemistry. 38:1999;1643
77. Jacobsen J.R., Hutchinson C.R., Cane D.E., Khosla C. Science. 277:1997;367
78. Aparicio J.F., Caffrey P., Marsden A.F., Staunton J., Leadlay P.F. J. Biol. Chem. 269:1994;8524