-
1
-
-
34247131820
-
-
Agilent Technologies, Available:, accessed 28 February
-
Agilent Technologies. 2007. Oligonucleotide Microarray Hybridization Protocol. Available: http://www.chem.agilent.com/scripts/ generic.asp?lpage=14919&indcol=Y&prodcol=Y [accessed 28 February 2007].
-
(2007)
Oligonucleotide Microarray Hybridization Protocol
-
-
-
2
-
-
12144290763
-
Identification of putative gene based markers of renal toxicity
-
Amin RP, Vickers AE, Sistare F, Thompson KL, Roman RJ, Lawton M, et al. 2004. Identification of putative gene based markers of renal toxicity. Environ Health Perspect 112:465-479.
-
(2004)
Environ Health Perspect
, vol.112
, pp. 465-479
-
-
Amin, R.P.1
Vickers, A.E.2
Sistare, F.3
Thompson, K.L.4
Roman, R.J.5
Lawton, M.6
-
3
-
-
30344446981
-
Gene expression analysis of the hepatotoxicant methapyrilene in primary rat hepatocytes: An interlaboratory study
-
Beekman JM, Boess F, Hildebrand H, Kalkuhl A, Suter L. 2006. Gene expression analysis of the hepatotoxicant methapyrilene in primary rat hepatocytes: an interlaboratory study. Environ Health Perspect 114:92-99.
-
(2006)
Environ Health Perspect
, vol.114
, pp. 92-99
-
-
Beekman, J.M.1
Boess, F.2
Hildebrand, H.3
Kalkuhl, A.4
Suter, L.5
-
4
-
-
0036296149
-
Reduction in cytochrome P-450 enzyme expression is associated with repression of CAR (constitutive androstane receptor) and PXR (pregnane X receptor) in mouse liver during the acute phase response
-
Beigneux AP, Moser AH, Shigenaga JK, Grunfeld C, Feingold KR. 2002. Reduction in cytochrome P-450 enzyme expression is associated with repression of CAR (constitutive androstane receptor) and PXR (pregnane X receptor) in mouse liver during the acute phase response. Biochem Biophys Res Commun 293:145-149.
-
(2002)
Biochem Biophys Res Commun
, vol.293
, pp. 145-149
-
-
Beigneux, A.P.1
Moser, A.H.2
Shigenaga, J.K.3
Grunfeld, C.4
Feingold, K.R.5
-
5
-
-
23744461982
-
Hepatitis C virus core triggers apoptosis in liver cells by inducing ER stress and ER calcium depletion
-
Benali-Furet NL, Chami M, Houel L, De Giorgi F, Vernejoul F, Lagorce D, et al. 2005. Hepatitis C virus core triggers apoptosis in liver cells by inducing ER stress and ER calcium depletion. Oncogene 24:4921-4933.
-
(2005)
Oncogene
, vol.24
, pp. 4921-4933
-
-
Benali-Furet, N.L.1
Chami, M.2
Houel, L.3
De Giorgi, F.4
Vernejoul, F.5
Lagorce, D.6
-
6
-
-
0033618443
-
Activation of the promoters of genes associated with DNA damage, oxidative stress, ER stress and protein malfolding by the bile salt, deoxycholate
-
Bernstein H, Payne CM, Bernstein C, Schneider J, Beard SE, Crowley CL. 1999. Activation of the promoters of genes associated with DNA damage, oxidative stress, ER stress and protein malfolding by the bile salt, deoxycholate. Toxicol Lett 108:37-46.
-
(1999)
Toxicol Lett
, vol.108
, pp. 37-46
-
-
Bernstein, H.1
Payne, C.M.2
Bernstein, C.3
Schneider, J.4
Beard, S.E.5
Crowley, C.L.6
-
7
-
-
26944440912
-
Hepatic gene expression changes throughout the day in the Fischer rat: Implications for toxicogenomic experiments
-
Boorman GA, Blackshear PE, Parker JS, Lobenhofer EK, Malarkey DE, Vallant MK, et al. 2005. Hepatic gene expression changes throughout the day in the Fischer rat: implications for toxicogenomic experiments. Toxicol Sci 86:185-193.
-
(2005)
Toxicol Sci
, vol.86
, pp. 185-193
-
-
Boorman, G.A.1
Blackshear, P.E.2
Parker, J.S.3
Lobenhofer, E.K.4
Malarkey, D.E.5
Vallant, M.K.6
-
8
-
-
33645154135
-
Cellular response to endoplasmic reticulum stress: A matter of life or death
-
Boyce M, Yuan J. 2006. Cellular response to endoplasmic reticulum stress: a matter of life or death. Cell Death Differ 13:363-373.
-
(2006)
Cell Death Differ
, vol.13
, pp. 363-373
-
-
Boyce, M.1
Yuan, J.2
-
9
-
-
0035038751
-
RNA expression in the early characterization of hepatotoxicants in Wistar rats by high-density DNA microarrays
-
Bulera SJ, Eddy SM, Ferguson E, Jatkoe TA, Reindel JF, Bleavins MR, et al. 2001. RNA expression in the early characterization of hepatotoxicants in Wistar rats by high-density DNA microarrays. Hepatology 33:1239-1258.
-
(2001)
Hepatology
, vol.33
, pp. 1239-1258
-
-
Bulera, S.J.1
Eddy, S.M.2
Ferguson, E.3
Jatkoe, T.A.4
Reindel, J.F.5
Bleavins, M.R.6
-
10
-
-
29244462498
-
Coordination of ER and oxidative stress signaling: The PERK/Nrf2 signaling pathway
-
Cullinan SB, Diehl JA. 2006. Coordination of ER and oxidative stress signaling: the PERK/Nrf2 signaling pathway. Int J Biochem Cell Biol 38:317-332.
-
(2006)
Int J Biochem Cell Biol
, vol.38
, pp. 317-332
-
-
Cullinan, S.B.1
Diehl, J.A.2
-
11
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE. 2002. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucl Acids Res 30:207-210.
-
(2002)
Nucl Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
12
-
-
0242665373
-
Complementary roles of farnesoid X receptor, pregnane X receptor, and constitutive androstane receptor in protection against bile acid toxicity
-
Guo GL, Lambert G, Negishi M, Ward JM, Brewer H Jr, Kliewer SA, et al. 2003. Complementary roles of farnesoid X receptor, pregnane X receptor, and constitutive androstane receptor in protection against bile acid toxicity. J Biol Chem 278:45062-45071.
-
(2003)
J Biol Chem
, vol.278
, pp. 45062-45071
-
-
Guo, G.L.1
Lambert, G.2
Negishi, M.3
Ward, J.M.4
Brewer Jr, H.5
Kliewer, S.A.6
-
13
-
-
11144356024
-
Integration of clinical and gene expression endpoints to explore furan-mediated hepatotoxicity
-
Hamadeh HK, Jayadev S, Gaillard ET, Huang Q, Stoll R, Blanchard K, et al. 2004. Integration of clinical and gene expression endpoints to explore furan-mediated hepatotoxicity. Mutat Res 549:169-183.
-
(2004)
Mutat Res
, vol.549
, pp. 169-183
-
-
Hamadeh, H.K.1
Jayadev, S.2
Gaillard, E.T.3
Huang, Q.4
Stoll, R.5
Blanchard, K.6
-
14
-
-
0036628957
-
Methapyrilene toxicity: Anchorage of pathologic observations to gene expression alterations
-
Hamadeh HK, Knight BL, Haugen AC, Sieber S, Amin RP, Bushel PR, et al. 2002. Methapyrilene toxicity: anchorage of pathologic observations to gene expression alterations. Toxicol Pathol 30:470-482.
-
(2002)
Toxicol Pathol
, vol.30
, pp. 470-482
-
-
Hamadeh, H.K.1
Knight, B.L.2
Haugen, A.C.3
Sieber, S.4
Amin, R.P.5
Bushel, P.R.6
-
15
-
-
0037333902
-
Toxicogenomics of bromobenzene hepatotoxicity: A combined transcriptomics and proteomics approach
-
Heijne WHM, Stierum RH, Slijper M, van Bladeren PJ, van Ommen B. 2003. Toxicogenomics of bromobenzene hepatotoxicity: a combined transcriptomics and proteomics approach. Biochem Pharmacol 65:857-875.
-
(2003)
Biochem Pharmacol
, vol.65
, pp. 857-875
-
-
Heijne, W.H.M.1
Stierum, R.H.2
Slijper, M.3
van Bladeren, P.J.4
van Ommen, B.5
-
16
-
-
3242742968
-
Gene expression profiling of rat livers reveals indicators of potential adverse effects
-
Heinloth AN, Irwin RD, Boorman GA, Nettesheim P, Fannin RD, Sieber SO, et al. 2004. Gene expression profiling of rat livers reveals indicators of potential adverse effects. Toxicol Sci 80:193-202.
-
(2004)
Toxicol Sci
, vol.80
, pp. 193-202
-
-
Heinloth, A.N.1
Irwin, R.D.2
Boorman, G.A.3
Nettesheim, P.4
Fannin, R.D.5
Sieber, S.O.6
-
17
-
-
31044455739
-
Molecular mechanism investigation of cycloheximide-induced hepatocyte apoptosis in rat livers by morphological and microarray analysis
-
Ito K, Kiyosawa N, Kumagai K, Manabe S, Matsunuma N, Yamoto T. 2006. Molecular mechanism investigation of cycloheximide-induced hepatocyte apoptosis in rat livers by morphological and microarray analysis. Toxicology 219:175-186.
-
(2006)
Toxicology
, vol.219
, pp. 175-186
-
-
Ito, K.1
Kiyosawa, N.2
Kumagai, K.3
Manabe, S.4
Matsunuma, N.5
Yamoto, T.6
-
18
-
-
0037960128
-
Betaine decreases hyperhomocysteinemia, endoplasmic reticulum stress, and liver injury in alcohol-fed mice
-
Ji C, Kaplowitz N. 2003. Betaine decreases hyperhomocysteinemia, endoplasmic reticulum stress, and liver injury in alcohol-fed mice. Gastroenterology 124:1488-1499.
-
(2003)
Gastroenterology
, vol.124
, pp. 1488-1499
-
-
Ji, C.1
Kaplowitz, N.2
-
19
-
-
11144355440
-
Applications of microarrays with toxicologically relevant genes (tox genes) for the evaluation of chemical toxicants in Sprague Dawley rats in vivo and human hepatocytes in vitro
-
Kier LD, Neft R, Tang L, Suizu R, Cook T, Onsurez K, et al. 2004. Applications of microarrays with toxicologically relevant genes (tox genes) for the evaluation of chemical toxicants in Sprague Dawley rats in vivo and human hepatocytes in vitro. Mutat Res 549:101-113.
-
(2004)
Mutat Res
, vol.549
, pp. 101-113
-
-
Kier, L.D.1
Neft, R.2
Tang, L.3
Suizu, R.4
Cook, T.5
Onsurez, K.6
-
20
-
-
0036152706
-
Implications of circadian gene expression in kidney, liver and the effects of fasting on pharmacogenomic studies
-
Kita Y, Shiozawa M, Jin W, Majewski RR, Besharsed JC, Green AS, et al. 2002. Implications of circadian gene expression in kidney, liver and the effects of fasting on pharmacogenomic studies. Pharmacogenetics 12:55-65.
-
(2002)
Pharmacogenetics
, vol.12
, pp. 55-65
-
-
Kita, Y.1
Shiozawa, M.2
Jin, W.3
Majewski, R.R.4
Besharsed, J.C.5
Green, A.S.6
-
21
-
-
0037462815
-
The farnesoid X-receptor is an essential regulator of cholesterol homeostasis
-
Lambert G, Amar MJA, Guo G, Brewer HB, Jr., Gonzalez FJ, Sinal CJ. 2003. The farnesoid X-receptor is an essential regulator of cholesterol homeostasis. J Biol Chem 278:2563-2570.
-
(2003)
J Biol Chem
, vol.278
, pp. 2563-2570
-
-
Lambert, G.1
Amar, M.J.A.2
Guo, G.3
Brewer Jr., H.B.4
Gonzalez, F.J.5
Sinal, C.J.6
-
22
-
-
0019307495
-
Liver tumors induced in rats by oral administration of the antihistaminic methapyrilene hydrochloride
-
Lijinsky W, Reuber MD, Blackwell BN. 1980. Liver tumors induced in rats by oral administration of the antihistaminic methapyrilene hydrochloride. Science 15:817-819.
-
(1980)
Science
, vol.15
, pp. 817-819
-
-
Lijinsky, W.1
Reuber, M.D.2
Blackwell, B.N.3
-
23
-
-
0037834732
-
A new approach to studying ochratoxin A (OTA)-induced nephrotoxicity: Expression profiling in vivo and in vitro employing cDNA microarrays
-
Lühe A, Hildebrand H, Bach U, Dingermann T, Ahr H-J. 2003. A new approach to studying ochratoxin A (OTA)-induced nephrotoxicity: expression profiling in vivo and in vitro employing cDNA microarrays. Toxicol Sci 73:315-328.
-
(2003)
Toxicol Sci
, vol.73
, pp. 315-328
-
-
Lühe, A.1
Hildebrand, H.2
Bach, U.3
Dingermann, T.4
Ahr, H.-J.5
-
24
-
-
18044390896
-
Glycogen synthase kinase-3 mediates acetaminophen-induced apoptosis in human hepatoma cells
-
Macanas-Pirard P, Yaacob N-S, Lee PC, Holder JC, Hinton RH, Kass GEN. 2005. Glycogen synthase kinase-3 mediates acetaminophen-induced apoptosis in human hepatoma cells. J Pharmacol Exp Ther 313:780-789.
-
(2005)
J Pharmacol Exp Ther
, vol.313
, pp. 780-789
-
-
Macanas-Pirard, P.1
Yaacob, N.-S.2
Lee, P.C.3
Holder, J.C.4
Hinton, R.H.5
Kass, G.E.N.6
-
25
-
-
0003616169
-
-
National Institutes of Health, Bethesda, MD:National Institutes of Health. Available:, accessed 25 February
-
National Institutes of Health. 2002. Public Health Service Policy on Humane Care and Use of Laboratory Animals. Bethesda, MD:National Institutes of Health. Available: http://grants.nih.gov/grants/olaw/ references/PHSPolicyLabAnimals.pdf [accessed 25 February 2007].
-
(2002)
Public Health Service Policy on Humane Care and Use of Laboratory Animals
-
-
-
26
-
-
0035370949
-
Intracellular signaling from the endoplasmic reticulum to the nucleus: The unfolded protein response in yeast and mammals
-
Patil C, Walter P. 2001. Intracellular signaling from the endoplasmic reticulum to the nucleus: the unfolded protein response in yeast and mammals. Curr Opin Cell Biol 13:349-355.
-
(2001)
Curr Opin Cell Biol
, vol.13
, pp. 349-355
-
-
Patil, C.1
Walter, P.2
-
27
-
-
28444448048
-
Mitochondrial perturbation attenuates bile acid-induced cytotoxicity
-
Payne C, Crowley-Weber C, Dvorak K, Bernstein C, Bernstein H, Holubec H, et al. 2005. Mitochondrial perturbation attenuates bile acid-induced cytotoxicity. Cell Biol Toxicol 21:215-231.
-
(2005)
Cell Biol Toxicol
, vol.21
, pp. 215-231
-
-
Payne, C.1
Crowley-Weber, C.2
Dvorak, K.3
Bernstein, C.4
Bernstein, H.5
Holubec, H.6
-
28
-
-
0032425968
-
Effects of induction and inhibition of cytochromes P450 on the hepatotoxicity of methapyrilene
-
Ratra GS, Cottrell S, Powell CJ. 1998a. Effects of induction and inhibition of cytochromes P450 on the hepatotoxicity of methapyrilene. Toxicol Sci 46:185-196.
-
(1998)
Toxicol Sci
, vol.46
, pp. 185-196
-
-
Ratra, G.S.1
Cottrell, S.2
Powell, C.J.3
-
30
-
-
0034671877
-
Methapyrilene hepatotoxicity is associated with increased hepatic glutathione, the formation of glucuronide conjugates, and enterohepatic recirculation
-
Ratra GS, Powell CJ, Park BK, Maggs JL, Cottrell S. 2000. Methapyrilene hepatotoxicity is associated with increased hepatic glutathione, the formation of glucuronide conjugates, and enterohepatic recirculation. Chem Biol Interact 129:279-295.
-
(2000)
Chem Biol Interact
, vol.129
, pp. 279-295
-
-
Ratra, G.S.1
Powell, C.J.2
Park, B.K.3
Maggs, J.L.4
Cottrell, S.5
-
31
-
-
0036147966
-
Genomics and proteomics analysis of acetaminophen toxicity in mouse liver
-
Ruepp SU, Tonge RP, Shaw J, Wallis N, Pognan F. 2002. Genomics and proteomics analysis of acetaminophen toxicity in mouse liver. Toxicol Sci 65:135-150.
-
(2002)
Toxicol Sci
, vol.65
, pp. 135-150
-
-
Ruepp, S.U.1
Tonge, R.P.2
Shaw, J.3
Wallis, N.4
Pognan, F.5
-
32
-
-
22244446505
-
The mammalian unfolded protein response
-
Schroder M, Kaufman RJ. 2005. The mammalian unfolded protein response. Annu Rev Biochem 74:739-789.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 739-789
-
-
Schroder, M.1
Kaufman, R.J.2
-
33
-
-
0035853165
-
The nuclear receptor PXR is a lithocholic acid sensor that protects against liver toxicity
-
Staudinger JL, Goodwin B, Jones SA, Hawkins-Brown D, MacKenzie KI, LaTour A, et al. 2001. The nuclear receptor PXR is a lithocholic acid sensor that protects against liver toxicity. Proc Natl Acad Sci USA 98:3369-3374.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 3369-3374
-
-
Staudinger, J.L.1
Goodwin, B.2
Jones, S.A.3
Hawkins-Brown, D.4
MacKenzie, K.I.5
LaTour, A.6
-
34
-
-
13844315320
-
Nuclear receptors constitutive androstane receptor and pregnane X receptor ameliorate cholestatic liver injury
-
Stedman CAM, Liddle C, Coulter SA, Sonoda J, Alvarez JGA, Moore DD, et al. 2005. Nuclear receptors constitutive androstane receptor and pregnane X receptor ameliorate cholestatic liver injury. Proc Natl Acad Sci USA 102: 2063-2068.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2063-2068
-
-
Stedman, C.A.M.1
Liddle, C.2
Coulter, S.A.3
Sonoda, J.4
Alvarez, J.G.A.5
Moore, D.D.6
-
35
-
-
1542271924
-
Interlaboratory evaluation of rat hepatic gene expression changes induced by methapyrilene
-
Waring JF, Ulrich RG, Flint N, Morfitt D, Kalkuhl A, Staedtler F, et al. 2004. Interlaboratory evaluation of rat hepatic gene expression changes induced by methapyrilene. Environ Health Perspect 112:439-448.
-
(2004)
Environ Health Perspect
, vol.112
, pp. 439-448
-
-
Waring, J.F.1
Ulrich, R.G.2
Flint, N.3
Morfitt, D.4
Kalkuhl, A.5
Staedtler, F.6
-
36
-
-
9444256954
-
Toxicogenomics and systems toxicology: Aims and prospects
-
Waters MD, Fostel JM. 2004. Toxicogenomics and systems toxicology: aims and prospects. Nat Rev Genet 5:936-948.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 936-948
-
-
Waters, M.D.1
Fostel, J.M.2
-
37
-
-
0036367792
-
Specific and overlapping functions of the nuclear hormone receptors CAR and PXR in xenobiotic response
-
Wei P, Zhang J, Dowhan DH, Han Y, Moore DD. 2002. Specific and overlapping functions of the nuclear hormone receptors CAR and PXR in xenobiotic response. Pharmacogenomics J 2:117-126.
-
(2002)
Pharmacogenomics J
, vol.2
, pp. 117-126
-
-
Wei, P.1
Zhang, J.2
Dowhan, D.H.3
Han, Y.4
Moore, D.D.5
-
38
-
-
33745828301
-
-
Wei Y, Wang D, Topczewski F, Pagliassotti MJ. 2006. Saturated fatty acids induce endoplasmic reticulum stress and apoptosis independently of ceramide in liver cells. Am J Physiol Endocrinol Metab 291(2):E275-E278. [Epub 2006 Feb 2].
-
Wei Y, Wang D, Topczewski F, Pagliassotti MJ. 2006. Saturated fatty acids induce endoplasmic reticulum stress and apoptosis independently of ceramide in liver cells. Am J Physiol Endocrinol Metab 291(2):E275-E278. [Epub 2006 Feb 2].
-
-
-
-
39
-
-
18244389201
-
Standardizing global gene expression analysis between laboratories and across platforms
-
Consortium MotTR
-
Weis BK, Consortium MotTR. 2005. Standardizing global gene expression analysis between laboratories and across platforms. Nat Methods 2:351-356.
-
(2005)
Nat Methods
, vol.2
, pp. 351-356
-
-
Weis, B.K.1
-
40
-
-
33646197928
-
Rosetta error model for gene expression analysis
-
Weng L, Dai H, Zhan Y, He Y, Stepaniants SB, Bassett DE. 2006. Rosetta error model for gene expression analysis. Bioinformatics 22:1111-1121.
-
(2006)
Bioinformatics
, vol.22
, pp. 1111-1121
-
-
Weng, L.1
Dai, H.2
Zhan, Y.3
He, Y.4
Stepaniants, S.B.5
Bassett, D.E.6
-
41
-
-
0025789095
-
Modulation of rat hepatic cytochromes P450 by chronic methapyrilene treatment
-
Wrighton SA, VandenBranden M, Brown TJ, Van Pelt CS, THomas PE, Shipley LA. 1991. Modulation of rat hepatic cytochromes P450 by chronic methapyrilene treatment. Biochem Pharmacol 42:1093-1097.
-
(1991)
Biochem Pharmacol
, vol.42
, pp. 1093-1097
-
-
Wrighton, S.A.1
VandenBranden, M.2
Brown, T.J.3
Van Pelt, C.S.4
THomas, P.E.5
Shipley, L.A.6
-
42
-
-
0034721159
-
Humanized xenobiotic response in mice expressing nuclear receptor SXR
-
Xie W, Barwick JL, Downes M, Blumberg B, Simon CM, Nelson MC, et al. 2000. Humanized xenobiotic response in mice expressing nuclear receptor SXR. Nature 406:435-439.
-
(2000)
Nature
, vol.406
, pp. 435-439
-
-
Xie, W.1
Barwick, J.L.2
Downes, M.3
Blumberg, B.4
Simon, C.M.5
Nelson, M.C.6
|