-
1
-
-
0026558894
-
Construction of a 3-chlorobiphenyl-utilizing recombinant from an intergeneric mating
-
Adams, R.H., Huang, C.-M., Higson, F.K., Brenner, V., and Focht, D.D. 1992. Construction of a 3-chlorobiphenyl-utilizing recombinant from an intergeneric mating. Appl Environ Microbiol 58:647-654.
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 647-654
-
-
Adams, R.H.1
Huang, C.-M.2
Higson, F.K.3
Brenner, V.4
Focht, D.D.5
-
2
-
-
4243064911
-
Lignin chemistry - Past, present and future
-
Alder, E. 1977. Lignin chemistry - past, present and future. Wood Sci Technol 11:169-218.
-
(1977)
Wood Sci Technol
, vol.11
, pp. 169-218
-
-
Alder, E.1
-
3
-
-
0037129976
-
Structure of oxalate decarboxylase from Bacillus subtilis at 1.75 Å resolution
-
Anand, R., Dorrestein, P.C., Kinsland, C., Begley, T.P., and Ealick, S.E. 2002. Structure of oxalate decarboxylase from Bacillus subtilis at 1.75 Å resolution. Biochemistry 41:7659-7669.
-
(2002)
Biochemistry
, vol.41
, pp. 7659-7669
-
-
Anand, R.1
Dorrestein, P.C.2
Kinsland, C.3
Begley, T.P.4
Ealick, S.E.5
-
6
-
-
0033040221
-
A functional 4-hydroxysalicylate/hydroxyquinol degradative pathway gene cluster is linked to the initial dibenzo-p-dioxin pathway genes in Sphingomonas sp. strain RW1
-
Armengaud, J., Timmis, K.N., and Wittich, R.M. 1999. A functional 4-hydroxysalicylate/hydroxyquinol degradative pathway gene cluster is linked to the initial dibenzo-p-dioxin pathway genes in Sphingomonas sp. strain RW1. J Bacteriol 181:3452-3461.
-
(1999)
J Bacteriol
, vol.181
, pp. 3452-3461
-
-
Armengaud, J.1
Timmis, K.N.2
Wittich, R.M.3
-
7
-
-
0034649338
-
Mechanistic diversity in a metalloenzyme superfamily
-
Armstrong, R.N. 2000. Mechanistic diversity in a metalloenzyme superfamily. Biochemistry 39:13625-13632.
-
(2000)
Biochemistry
, vol.39
, pp. 13625-13632
-
-
Armstrong, R.N.1
-
8
-
-
0031596608
-
2 as a substrate in the cytoplasm of bacteria under aerobic and microaerobic conditions
-
2 as a substrate in the cytoplasm of bacteria under aerobic and microaerobic conditions. J Bacteriol 180:2133-2136.
-
(1998)
J Bacteriol
, vol.180
, pp. 2133-2136
-
-
Arras, T.1
Schirawski, J.2
Unden, G.3
-
9
-
-
0028276797
-
Analysis of three 2,3-dihydroxybiphenyl 1,2-dioxygenases found in Rhodococcus globerulus P6. Identification of a new family of extradiol dioxygenases
-
Asturias, J.A., Eltis, L.D., Prucha, M., and Timmis, K.N. 1994. Analysis of three 2,3-dihydroxybiphenyl 1,2-dioxygenases found in Rhodococcus globerulus P6. Identification of a new family of extradiol dioxygenases. J Biol Chem 269:7807-7815.
-
(1994)
J Biol Chem
, vol.269
, pp. 7807-7815
-
-
Asturias, J.A.1
Eltis, L.D.2
Prucha, M.3
Timmis, K.N.4
-
10
-
-
0021330498
-
Suicide inactivation of catechol 2,3-dioxygenase from Pseudomonas putida mt-2 by 3-halocatechols
-
Bartels, I., Knackmuss, H.-J., and Reineke, W. 1984. Suicide inactivation of catechol 2,3-dioxygenase from Pseudomonas putida mt-2 by 3-halocatechols. Appl Environ Microbiol 47:500-505.
-
(1984)
Appl Environ Microbiol
, vol.47
, pp. 500-505
-
-
Bartels, I.1
Knackmuss, H.-J.2
Reineke, W.3
-
11
-
-
0342618500
-
Fosfomycin resistance protein (FosA) is a manganese metalloglutathione transferase related to glyoxalase I and the extradiol dioxygenases
-
Bernat, B.A., Laughlin, L.T., and Armstrong, R.N. 1997. Fosfomycin resistance protein (FosA) is a manganese metalloglutathione transferase related to glyoxalase I and the extradiol dioxygenases. Biochemistry 36:3050-3055.
-
(1997)
Biochemistry
, vol.36
, pp. 3050-3055
-
-
Bernat, B.A.1
Laughlin, L.T.2
Armstrong, R.N.3
-
12
-
-
0028210260
-
Aliphatic and aromatic inhibitors binding to the active site of catechol 2,3-dioxygenase from Pseudomonas putida mt-2
-
Bertini, I., Briganti, F., and Scozzafava, A. 1994. Aliphatic and aromatic inhibitors binding to the active site of catechol 2,3-dioxygenase from Pseudomonas putida mt-2. FEBS Lett 343:56-60.
-
(1994)
FEBS Lett
, vol.343
, pp. 56-60
-
-
Bertini, I.1
Briganti, F.2
Scozzafava, A.3
-
13
-
-
33645017788
-
Crystal structure of the non-haem iron halogenase SyrB2 in syringomycin biosynthesis
-
Blasiak, L.C., Vaillancourt, F.H., Walsh, C.T., and Drennan, C.L. 2006. Crystal structure of the non-haem iron halogenase SyrB2 in syringomycin biosynthesis. Nature 440:368-371.
-
(2006)
Nature
, vol.440
, pp. 368-371
-
-
Blasiak, L.C.1
Vaillancourt, F.H.2
Walsh, C.T.3
Drennan, C.L.4
-
14
-
-
0001884567
-
2,3-Dihydroxybiphenyl 1,2-dioxygenase
-
Messerschmidt, A., Huber, R., Poulos, T., and Wieghardt, K. eds. Chichester, UK: John Wiley & Sons
-
Bolin, J.T., and Eltis, L.D. 2001. 2,3-Dihydroxybiphenyl 1,2-dioxygenase. In: Handbook of Metalloproteins. Messerschmidt, A., Huber, R., Poulos, T., and Wieghardt, K. eds. Chichester, UK: John Wiley & Sons, pp. 632-642.
-
(2001)
Handbook of Metalloproteins
, pp. 632-642
-
-
Bolin, J.T.1
Eltis, L.D.2
-
15
-
-
29044431814
-
Catalytic reaction mechanism of homogentisate dioxygenase: A hybrid DFT study
-
Borowski, T., Georgiev, V., and Siegbahn, P.E. 2005. Catalytic reaction mechanism of homogentisate dioxygenase: a hybrid DFT study. J Am Chem Soc 127:17303-17314.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 17303-17314
-
-
Borowski, T.1
Georgiev, V.2
Siegbahn, P.E.3
-
16
-
-
0035822094
-
Solving the riddle of the intradiol and extradiol catechol dioxygenases: How do enzymes control hydroperoxide rearrangements?
-
Bugg, T.D.H., and Lin, G. 2001. Solving the riddle of the intradiol and extradiol catechol dioxygenases: how do enzymes control hydroperoxide rearrangements? Chem Commun 2001:941-952.
-
(2001)
Chem Commun
, vol.2001
, pp. 941-952
-
-
Bugg, T.D.H.1
Lin, G.2
-
17
-
-
0027431230
-
Overproduction, purification and properties of 2,3- dihydroxyphenylpropionate 1,2-dioxygenase from Escherichia coli
-
Bugg, T.D.H. 1993. Overproduction, purification and properties of 2,3-dihydroxyphenylpropionate 1,2-dioxygenase from Escherichia coli. Biochim Biophys Acta 1202:258-264.
-
(1993)
Biochim Biophys Acta
, vol.1202
, pp. 258-264
-
-
Bugg, T.D.H.1
-
18
-
-
0019772728
-
The reaction of oxygen with protocatechuate 3,4-dioxygenase from Pseudomonas putida. Characterization of a new oxygenated intermediate
-
Bull, C., Ballou, D.P., and Otsuka, S. 1981. The reaction of oxygen with protocatechuate 3,4-dioxygenase from Pseudomonas putida. Characterization of a new oxygenated intermediate. J Biol Chem 256:12681-12686.
-
(1981)
J Biol Chem
, vol.256
, pp. 12681-12686
-
-
Bull, C.1
Ballou, D.P.2
Otsuka, S.3
-
19
-
-
0014378846
-
Anthranilic acid metabolism by microorganisms. Formation of 5-hydroxyanthranilate as an intermediate in anthranilate metabolism by Norcardia opaca
-
Cain, R.B. 1968. Anthranilic acid metabolism by microorganisms. Formation of 5-hydroxyanthranilate as an intermediate in anthranilate metabolism by Norcardia opaca. Antonie Van Leeuwenhoek 34:17-32.
-
(1968)
Antonie Van Leeuwenhoek
, vol.34
, pp. 17-32
-
-
Cain, R.B.1
-
20
-
-
0030927104
-
Crystal structure of human glyoxalase I-evidence for gene duplication and 3D domain swapping
-
Cameron, A.D., Olin, B., Ridderstrom, M., Mannervik, B., and Jones, T. A. 1997. Crystal structure of human glyoxalase I-evidence for gene duplication and 3D domain swapping. EMBO J. 16:3386-3395.
-
(1997)
EMBO J
, vol.16
, pp. 3386-3395
-
-
Cameron, A.D.1
Olin, B.2
Ridderstrom, M.3
Mannervik, B.4
Jones, T.A.5
-
21
-
-
0015874995
-
Metabolism of biphenyl. 2-Hydroxy-6-oxo-6-phenylhexa-2,4-dienoate: The meta-cleavage product from 2,3-dihydroxybiphenyl by Pseudomonas putida
-
Catelani, D., Colombi, A., Sorlini, C., and Treccani, V. 1973. Metabolism of biphenyl. 2-Hydroxy-6-oxo-6-phenylhexa-2,4-dienoate: the meta-cleavage product from 2,3-dihydroxybiphenyl by Pseudomonas putida. Biochem J 134:1063-1066.
-
(1973)
Biochem J
, vol.134
, pp. 1063-1066
-
-
Catelani, D.1
Colombi, A.2
Sorlini, C.3
Treccani, V.4
-
22
-
-
0028948295
-
Substrate specificity differences between two catechol 2,3-dioxygenases encoded by the TOL and NAH plasmids from Pseudomonas putida
-
Cerdan, P., Rekik, M., and Harayama, S. 1995. Substrate specificity differences between two catechol 2,3-dioxygenases encoded by the TOL and NAH plasmids from Pseudomonas putida. Eur J Biochem 229:113-118.
-
(1995)
Eur J Biochem
, vol.229
, pp. 113-118
-
-
Cerdan, P.1
Rekik, M.2
Harayama, S.3
-
23
-
-
0028033313
-
Substrate specificity of catechol 2,3-dioxygenase encoded by TOL plasmid pWW0 of Pseudomonas putida and its relationship to cell growth
-
Cerdan, P., Wasserfallen, A., Rekik, M., Timmis, K.N., and Harayama, S. 1994. Substrate specificity of catechol 2,3-dioxygenase encoded by TOL plasmid pWW0 of Pseudomonas putida and its relationship to cell growth. J Bacteriol 176:6074-6081.
-
(1994)
J Bacteriol
, vol.176
, pp. 6074-6081
-
-
Cerdan, P.1
Wasserfallen, A.2
Rekik, M.3
Timmis, K.N.4
Harayama, S.5
-
24
-
-
0034102893
-
Degradation of 4-nitrocatechol by Burkholderia cepacia: A plasmid-encoded novel pathway
-
Chauhan, A., Samanta, S.K., and Jain, R.K. 2000, Degradation of 4-nitrocatechol by Burkholderia cepacia: a plasmid-encoded novel pathway. J Appl Microbiol 88:764-772.
-
(2000)
J Appl Microbiol
, vol.88
, pp. 764-772
-
-
Chauhan, A.1
Samanta, S.K.2
Jain, R.K.3
-
25
-
-
0842307343
-
Characterization and functional identification of a novel plant 4,5-extradiol dioxygenase involved in betalain pigment biosynthesis in Portulaca grandiflora
-
Christinet, L., Burdet, F.X., Zaiko, M., Hinz, U., and Zryd, J.P. 2004. Characterization and functional identification of a novel plant 4,5-extradiol dioxygenase involved in betalain pigment biosynthesis in Portulaca grandiflora. Plant Physiol 134:265-274.
-
(2004)
Plant Physiol
, vol.134
, pp. 265-274
-
-
Christinet, L.1
Burdet, F.X.2
Zaiko, M.3
Hinz, U.4
Zryd, J.P.5
-
26
-
-
0029988489
-
The x-ray crystal structure of phosphomannose isomerase from Candida albicans at 1.7 angstrom resolution
-
Cleasby, A., Wonacott, A., Skarzynski, T., Hubbard, R.E., Davies, G.J., Proudfoot, A.E., Bernard, A.R., Payton, M.A., and Wells, T.N. 1996. The x-ray crystal structure of phosphomannose isomerase from Candida albicans at 1.7 angstrom resolution. Nat Struct Biol 3:470-479.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 470-479
-
-
Cleasby, A.1
Wonacott, A.2
Skarzynski, T.3
Hubbard, R.E.4
Davies, G.J.5
Proudfoot, A.E.6
Bernard, A.R.7
Payton, M.A.8
Wells, T.N.9
-
27
-
-
0019303264
-
Catabolism of 3- and 4-hydroxyphenylacetate by the 3,4- dihydroxyphenylacetate pathway in Escherichia coli
-
Cooper, R.A., and Skinner, M.A. 1980. Catabolism of 3- and 4-hydroxyphenylacetate by the 3,4-dihydroxyphenylacetate pathway in Escherichia coli. J Bacteriol 143:302-306.
-
(1980)
J Bacteriol
, vol.143
, pp. 302-306
-
-
Cooper, R.A.1
Skinner, M.A.2
-
28
-
-
0017077975
-
Pathways of 4-hydroxybenzoate degradation among species of Bacillus
-
Crawford, R.L. 1976. Pathways of 4-hydroxybenzoate degradation among species of Bacillus. J Bacteriol 127:204-210.
-
(1976)
J Bacteriol
, vol.127
, pp. 204-210
-
-
Crawford, R.L.1
-
29
-
-
0016671272
-
Purification and properties of gentisate 1,2-dioxygenase from Moraxella osloensis
-
Crawford, R.L., Hutton, S.W., and Chapman, P.J. 1975. Purification and properties of gentisate 1,2-dioxygenase from Moraxella osloensis. J Bacteriol 121:794-799.
-
(1975)
J Bacteriol
, vol.121
, pp. 794-799
-
-
Crawford, R.L.1
Hutton, S.W.2
Chapman, P.J.3
-
30
-
-
0018227419
-
Determinants of biodegradability
-
Dagley, S. 1978. Determinants of biodegradability. Q Rev Biophys 11:577-602.
-
(1978)
Q Rev Biophys
, vol.11
, pp. 577-602
-
-
Dagley, S.1
-
31
-
-
0000976639
-
Biochemistry of aromatic hydrocarbon degradation in Pseudomonads
-
Sokatch, J.R., and Ornston, J. L. eds. Orlando: Academic Press Inc.
-
Dagley, S. 1986. Biochemistry of aromatic hydrocarbon degradation in Pseudomonads. In: Sokatch, J.R., and Ornston, J. L. eds. The Bacteria, Orlando: Academic Press Inc., pp. 527-555.
-
(1986)
The Bacteria
, pp. 527-555
-
-
Dagley, S.1
-
32
-
-
0014346766
-
The metabolism of protocatechuate by Pseudomonas testosteroni
-
Dagley, S., Geary, P.J., and Wood, J.M. 1968. The metabolism of protocatechuate by Pseudomonas testosteroni. Biochem J 109:559-568.
-
(1968)
Biochem J
, vol.109
, pp. 559-568
-
-
Dagley, S.1
Geary, P.J.2
Wood, J.M.3
-
33
-
-
0036896381
-
Identification and analysis of a bottleneck in PCB biodegradation
-
Dai, S., Vaillancourt, F.H., Maaroufi, H., Drouin, N.M., Neau, D.B., Snieckus, V., Bolin, J.T., and Eltis, L.D. 2002. Identification and analysis of a bottleneck in PCB biodegradation. Nat Struct Biol 9:934-939.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 934-939
-
-
Dai, S.1
Vaillancourt, F.H.2
Maaroufi, H.3
Drouin, N.M.4
Neau, D.B.5
Snieckus, V.6
Bolin, J.T.7
Eltis, L.D.8
-
34
-
-
0033556385
-
One protein, two enzymes
-
Dai, Y., Wensink, P.C., and Abeles, R.H. 1999. One protein, two enzymes. J Biol Chem 274:1193-1195.
-
(1999)
J Biol Chem
, vol.274
, pp. 1193-1195
-
-
Dai, Y.1
Wensink, P.C.2
Abeles, R.H.3
-
35
-
-
0028960992
-
Sequence analysis of a gene cluster involved in metabolism of 2,4,5-trichlorophenoxyacetic acid by Burkholderia cepacia AC1100
-
Daubaras, D.L., Hershberger, C.D., Kitano, K., and Chakrabarty, A.M. 1995. Sequence analysis of a gene cluster involved in metabolism of 2,4,5-trichlorophenoxyacetic acid by Burkholderia cepacia AC1100. Appl Environ Microbiol 61:1279-1289.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 1279-1289
-
-
Daubaras, D.L.1
Hershberger, C.D.2
Kitano, K.3
Chakrabarty, A.M.4
-
36
-
-
0032721192
-
Genetic and biochemical comparison of 2-aminophenol 1,6-dioxygenase of Pseudomonas pseudoalcaligenes JS45 to meta-cleavage dioxygenases: Divergent evolution of 2-aminophenol meta-cleavage pathway
-
Davis, J.K., He, Z., Somerville, C.C., and Spain, J.C. 1999. Genetic and biochemical comparison of 2-aminophenol 1,6-dioxygenase of Pseudomonas pseudoalcaligenes JS45 to meta-cleavage dioxygenases: divergent evolution of 2-aminophenol meta-cleavage pathway. Arch Microbiol 172:330-339.
-
(1999)
Arch Microbiol
, vol.172
, pp. 330-339
-
-
Davis, J.K.1
He, Z.2
Somerville, C.C.3
Spain, J.C.4
-
37
-
-
0043194282
-
2 reactivity of the non-heme ferrous site in extradiol dioxygenases
-
2 reactivity of the non-heme ferrous site in extradiol dioxygenases. J Am Chem Soc 125:11214-11227.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 11214-11227
-
-
Davis, M.I.1
Wasinger, E.C.2
Decker, A.3
Pau, M.Y.M.4
Vaillancourt, F.H.5
Bolin, J.T.6
Eltis, L.D.7
Hedman, B.8
Hodgson, K.O.9
Solomon, E.I.10
-
39
-
-
33644848891
-
Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400
-
Denef, V.J., Klappenbach, J.A., Patrauchan, M.A., Florizone, C., Rodrigues, J.L.M., Tsoi, T.V., Verstraete, W., Eltis, L.D., and Tiedje, J.M. 2006. Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400. Appl Environ Microbiol 72:585-595.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 585-595
-
-
Denef, V.J.1
Klappenbach, J.A.2
Patrauchan, M.A.3
Florizone, C.4
Rodrigues, J.L.M.5
Tsoi, T.V.6
Verstraete, W.7
Eltis, L.D.8
Tiedje, J.M.9
-
40
-
-
0028244721
-
Crystal structure and site-directed mutagenesis of a bleomycin resistance protein and their significance for drug sequestering
-
Dumas, P., Bergdoll, M., Cagnon, C., and Masson, J.M. 1994. Crystal structure and site-directed mutagenesis of a bleomycin resistance protein and their significance for drug sequestering. EMBO J 13:2483-2492.
-
(1994)
EMBO J
, vol.13
, pp. 2483-2492
-
-
Dumas, P.1
Bergdoll, M.2
Cagnon, C.3
Masson, J.M.4
-
41
-
-
0035663539
-
Evolution of functional diversity in the cupin superfamily
-
Dunwell, J.M., Culham, A., Carter, C.E., Sosa-Aguirre, C.R., and Goodenough, P.W. 2001. Evolution of functional diversity in the cupin superfamily. Trends Biochem Sci 26:740-746.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 740-746
-
-
Dunwell, J.M.1
Culham, A.2
Carter, C.E.3
Sosa-Aguirre, C.R.4
Goodenough, P.W.5
-
42
-
-
0034096459
-
Microbial relatives of the seed storage proteins of higher plants: Conservation of structure and diversification of function during evolution of the cupin superfamily
-
Dunwell, J.M., Khuri, S., and Gane, P.J. 2000. Microbial relatives of the seed storage proteins of higher plants: conservation of structure and diversification of function during evolution of the cupin superfamily. Microbiol Mol Biol Rev 64:153-179.
-
(2000)
Microbiol Mol Biol Rev
, vol.64
, pp. 153-179
-
-
Dunwell, J.M.1
Khuri, S.2
Gane, P.J.3
-
43
-
-
27544468840
-
Structure of catechol 1,2-dioxygenase from Pseudomonas arvilla
-
Earhart, C.A., Vetting, M.W., Gosu, R., Michaud-Soret, I., Que, L. Jr., and Ohlendorf, D.H. 2005. Structure of catechol 1,2-dioxygenase from Pseudomonas arvilla. Biochem Biophys Res Commun 338:198-205.
-
(2005)
Biochem Biophys Res Commun
, vol.338
, pp. 198-205
-
-
Earhart, C.A.1
Vetting, M.W.2
Gosu, R.3
Michaud-Soret, I.4
Que Jr., L.5
Ohlendorf, D.H.6
-
44
-
-
0030954878
-
Crystal structure and resonance Raman studies of protocatechuate 3,4-dioxygenase complexed with 3,4-dihydroxyphenylacetate
-
Elgren, T.E., Orville, A.M., Kelly, K.A., Lipscomb, J.D., Ohlendorf, D.H., and Que, L. Jr. 1997. Crystal structure and resonance Raman studies of protocatechuate 3,4-dioxygenase complexed with 3,4-dihydroxyphenylacetate. Biochemistry 36:11504-11513.
-
(1997)
Biochemistry
, vol.36
, pp. 11504-11513
-
-
Elgren, T.E.1
Orville, A.M.2
Kelly, K.A.3
Lipscomb, J.D.4
Ohlendorf, D.H.5
Que Jr., L.6
-
45
-
-
0029846961
-
Evolutionary relationships among extradiol dioxygenases
-
Eltis, L.D., and Bolin, J.T. 1996. Evolutionary relationships among extradiol dioxygenases. J Bacteriol 178:5930-5937.
-
(1996)
J Bacteriol
, vol.178
, pp. 5930-5937
-
-
Eltis, L.D.1
Bolin, J.T.2
-
46
-
-
0027509616
-
Purification and crystallization of 2,3-dihydroxybiphenyl 1,2-dioxygenase
-
Eltis, L.D., Hofmann, B., Hecht, H.-J., Lunsdorf, H. and Timmis, K.N. 1993. Purification and crystallization of 2,3-dihydroxybiphenyl 1,2-dioxygenase. J Biol Chem 268:2727-2732.
-
(1993)
J Biol Chem
, vol.268
, pp. 2727-2732
-
-
Eltis, L.D.1
Hofmann, B.2
Hecht, H.-J.3
Lunsdorf, H.4
Timmis, K.N.5
-
47
-
-
27744516150
-
The role of histidine 200 in MndD, the Mn(II)-dependent 3,4-dihydroxyphenylacetate 2,3-dioxygenase from Arthrobacter globiformis CM-2, a site-directed mutagenesis study
-
Emerson, J.P., Wagner, M.L., Reynolds, M.F., Que, L. Jr., Sadowsky, M.J., and Wackett, L.P. 2005. The role of histidine 200 in MndD, the Mn(II)-dependent 3,4-dihydroxyphenylacetate 2,3-dioxygenase from Arthrobacter globiformis CM-2, a site-directed mutagenesis study. J Biol Inorg Chem 10:751-760.
-
(2005)
J Biol Inorg Chem
, vol.10
, pp. 751-760
-
-
Emerson, J.P.1
Wagner, M.L.2
Reynolds, M.F.3
Que Jr., L.4
Sadowsky, M.J.5
Wackett, L.P.6
-
48
-
-
20444401188
-
Crystal structure of the hydroxyquinol 1,2-dioxygenase from Nocardioides simplex 3E, a key enzyme involved in polychlorinated aromatics biodegradation
-
Ferraroni, M., Seifert, J., Travkin, V.M., Thiel, M., Kaschabek, S., Scozzafava, A., Golovleva, L., Schlomann, M., and Briganti, F. 2005. Crystal structure of the hydroxyquinol 1,2-dioxygenase from Nocardioides simplex 3E, a key enzyme involved in polychlorinated aromatics biodegradation. J Biol Chem 280:21144-21154.
-
(2005)
J Biol Chem
, vol.280
, pp. 21144-21154
-
-
Ferraroni, M.1
Seifert, J.2
Travkin, V.M.3
Thiel, M.4
Kaschabek, S.5
Scozzafava, A.6
Golovleva, L.7
Schlomann, M.8
Briganti, F.9
-
49
-
-
3042546949
-
Crystal structure of 4-chlorocatechol 1,2-dioxygenase from the chlorophenol-utilizing gram-positive Rhodococcus opacus 1CP
-
Ferraroni, M., Solyanikova, I.P., Kolomytseva, M.P., Scozzafava, A., Golovleva, L., and Briganti, F. 2004. Crystal structure of 4-chlorocatechol 1,2-dioxygenase from the chlorophenol-utilizing gram-positive Rhodococcus opacus 1CP. J Biol Chem 279:27646-27655.
-
(2004)
J Biol Chem
, vol.279
, pp. 27646-27655
-
-
Ferraroni, M.1
Solyanikova, I.P.2
Kolomytseva, M.P.3
Scozzafava, A.4
Golovleva, L.5
Briganti, F.6
-
50
-
-
0037210467
-
Oxygenases without requirement for cofactors or metal ions
-
Fetzner, S. 2002. Oxygenases without requirement for cofactors or metal ions. Appl Microbiol Biotechnol 60:243-257.
-
(2002)
Appl Microbiol Biotechnol
, vol.60
, pp. 243-257
-
-
Fetzner, S.1
-
51
-
-
0001749787
-
Structural insight into the aromatic amino acid hydroxylases and their disease-related mutant forms
-
Flatmark, T., and Stevens, R.C. 1999. Structural insight into the aromatic amino acid hydroxylases and their disease-related mutant forms. Chem Rev 99:2137-2160.
-
(1999)
Chem Rev
, vol.99
, pp. 2137-2160
-
-
Flatmark, T.1
Stevens, R.C.2
-
52
-
-
29644446062
-
Directed evolution of a ring-cleaving dioxygenase for polychlorinated biphenyl degradation
-
Fortin, P.D., Macpherson, I., Neau, D.B., Bolin, J.T., and Eltis, L.D. 2005. Directed evolution of a ring-cleaving dioxygenase for polychlorinated biphenyl degradation. J Biol Chem 280:42307-42314.
-
(2005)
J Biol Chem
, vol.280
, pp. 42307-42314
-
-
Fortin, P.D.1
Macpherson, I.2
Neau, D.B.3
Bolin, J.T.4
Eltis, L.D.5
-
53
-
-
0032562027
-
3+ ligand in protocatechuate 3,4-dioxygenase influences substrate binding and product release: Evidence for new reaction cycle intermediates
-
3+ ligand in protocatechuate 3,4-dioxygenase influences substrate binding and product release: evidence for new reaction cycle intermediates. Biochemistry 37:2131-2144.
-
(1998)
Biochemistry
, vol.37
, pp. 2131-2144
-
-
Frazee, R.W.1
Orville, A.M.2
Dolbeare, K.B.3
Yu, H.4
Ohlendorf, D.H.5
Lipscomb, J.D.6
-
54
-
-
27744471646
-
Dioxygenases without requirement for cofactors: Identification of amino acid residues involved in substrate binding and catalysis, and testing for rate-limiting steps in the reaction of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase
-
Frerichs-Deeken, U., and Fetzner, S. 2005. Dioxygenases without requirement for cofactors: identification of amino acid residues involved in substrate binding and catalysis, and testing for rate-limiting steps in the reaction of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase. Curr Microbiol 51:344-352.
-
(2005)
Curr Microbiol
, vol.51
, pp. 344-352
-
-
Frerichs-Deeken, U.1
Fetzner, S.2
-
55
-
-
8544222809
-
Dioxygenases without requirement for cofactors and their chemical model reaction: Compulsory order ternary complex mechanism of 1H-3-hydroxy-4- oxoquinaldine 2,4-dioxygenase involving general base catalysis by histidine 251 and single-electron oxidation of the substrate dianion
-
Frerichs-Deeken, U., Ranguelova, K., Kappl, R., Huttermann, J., and Fetzner, S. 2004. Dioxygenases without requirement for cofactors and their chemical model reaction: compulsory order ternary complex mechanism of 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase involving general base catalysis by histidine 251 and single-electron oxidation of the substrate dianion. Biochemistry 43:14485-14499.
-
(2004)
Biochemistry
, vol.43
, pp. 14485-14499
-
-
Frerichs-Deeken, U.1
Ranguelova, K.2
Kappl, R.3
Huttermann, J.4
Fetzner, S.5
-
56
-
-
0036181693
-
Crystal structure of the copper-containing quercetin 2,3-dioxygenase from Aspergillus japonicus
-
Fusetti, F., Schroter, K.H., Steiner, R.A., van Noort, P.I., Pijning, T., Rozeboom, H. J., Kalk, K.H., Egmond, M.R., and Dijkstra, B.W. 2002. Crystal structure of the copper-containing quercetin 2,3-dioxygenase from Aspergillus japonicus. Structure 10:259-268.
-
(2002)
Structure
, vol.10
, pp. 259-268
-
-
Fusetti, F.1
Schroter, K.H.2
Steiner, R.A.3
Van Noort, P.I.4
Pijning, T.5
Rozeboom, H.J.6
Kalk, K.H.7
Egmond, M.R.8
Dijkstra, B.W.9
-
57
-
-
0018341179
-
Metabolism of phenol and resorcinol in Trichosporon cutaneum
-
Gaal, A., and Neujahr, H.Y. 1979. Metabolism of phenol and resorcinol in Trichosporon cutaneum. J Bacteriol 137:13-21.
-
(1979)
J Bacteriol
, vol.137
, pp. 13-21
-
-
Gaal, A.1
Neujahr, H.Y.2
-
58
-
-
0034923923
-
Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies
-
Gerlt, J.A., and Babbitt, P.C. 2001. Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies. Ann Rev Biochem 70:209-246.
-
(2001)
Ann Rev Biochem
, vol.70
, pp. 209-246
-
-
Gerlt, J.A.1
Babbitt, P.C.2
-
59
-
-
0036844165
-
Genes coding for a new pathway of aerobic benzoate metabolism in Azoarcus evansii
-
Gescher, J., Zaar, A., Mohamed, M., Schagger, H., and Fuchs, G. 2002. Genes coding for a new pathway of aerobic benzoate metabolism in Azoarcus evansii. J Bacteriol 184:6301-6315.
-
(2002)
J Bacteriol
, vol.184
, pp. 6301-6315
-
-
Gescher, J.1
Zaar, A.2
Mohamed, M.3
Schagger, H.4
Fuchs, G.5
-
61
-
-
0014314575
-
Oxidative degradation of aromatic hydrocarbons by microorganisms. I. Enzymatic formation of catechol from benzene
-
Gibson, D.T., Koch, J.R., and Kallio, R. E. 1968. Oxidative degradation of aromatic hydrocarbons by microorganisms. I. Enzymatic formation of catechol from benzene. Biochemistry 7:2653-2662.
-
(1968)
Biochemistry
, vol.7
, pp. 2653-2662
-
-
Gibson, D.T.1
Koch, J.R.2
Kallio, R.E.3
-
62
-
-
33748771178
-
A Large Stimulon Induced by Biphenyl and Alkyl Benzenes in Rhodococcus sp. RHA1
-
In press
-
Gonçalves, E.R., Hara, H., Miyazawa, D., Davies, J., Eltis, L.D., and Mohn, W.W. 2006. A Large Stimulon Induced by Biphenyl and Alkyl Benzenes in Rhodococcus sp. RHA1. Appl Environ Microbiol, 72. In press.
-
(2006)
Appl Environ Microbiol
, pp. 72
-
-
Gonçalves, E.R.1
Hara, H.2
Miyazawa, D.3
Davies, J.4
Eltis, L.D.5
Mohn, W.W.6
-
63
-
-
0141732267
-
Conversion of extradiol aromatic ring-cleaving homoprotocatechuate 2,3-dioxygenase into an intradiol cleaving enzyme
-
Groce, S.L., and Lipscomb, J.D. 2003. Conversion of extradiol aromatic ring-cleaving homoprotocatechuate 2,3-dioxygenase into an intradiol cleaving enzyme. J Am Chem Soc 125:11780-11781.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 11780-11781
-
-
Groce, S.L.1
Lipscomb, J.D.2
-
64
-
-
18544362332
-
Aromatic ring cleavage by homoprotocatechuate 2,3-dioxygenase: Role of His200 in the kinetics of interconversion of reaction cycle intermediates
-
Grace, S.L., and Lipscomb, J.D. 2005. Aromatic ring cleavage by homoprotocatechuate 2,3-dioxygenase: role of His200 in the kinetics of interconversion of reaction cycle intermediates. Biochemistry 44:7175-7188.
-
(2005)
Biochemistry
, vol.44
, pp. 7175-7188
-
-
Grace, S.L.1
Lipscomb, J.D.2
-
65
-
-
10044256407
-
Single-turnover kinetics of homoprotocatechuate 2,3-dioxygenase
-
Groce, S.L., Miller-Rodeberg, M.A., and Lipscomb, J.D. 2004. Single-turnover kinetics of homoprotocatechuate 2,3-dioxygenase. Biochemistry 43:15141-15153.
-
(2004)
Biochemistry
, vol.43
, pp. 15141-15153
-
-
Groce, S.L.1
Miller-Rodeberg, M.A.2
Lipscomb, J.D.3
-
66
-
-
0026747724
-
Naphthalene degradation via salicylate and gentisate by Rhodococcus sp. strain B4
-
Grund, E., Denecke, B., and Eichenlaub, R. 1992. Naphthalene degradation via salicylate and gentisate by Rhodococcus sp. strain B4. Appl Environ Microbiol 58:1874-1877.
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 1874-1877
-
-
Grund, E.1
Denecke, B.2
Eichenlaub, R.3
-
67
-
-
0001375191
-
Antisense gene that inhibits synthesis of the hormone ethylene in transgenic plants
-
Hamilton, A.J., Lycett, G.W., and Grierson, D. 1990. Antisense gene that inhibits synthesis of the hormone ethylene in transgenic plants. Nature 346:284-287.
-
(1990)
Nature
, vol.346
, pp. 284-287
-
-
Hamilton, A.J.1
Lycett, G.W.2
Grierson, D.3
-
68
-
-
0028862027
-
Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading pseudomonad
-
Han, S., Eltis, L.D., Timmis, K.N., Muchmore, S.W., and Bolin, J.T. 1995. Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading pseudomonad. Science 270:976-980.
-
(1995)
Science
, vol.270
, pp. 976-980
-
-
Han, S.1
Eltis, L.D.2
Timmis, K.N.3
Muchmore, S.W.4
Bolin, J.T.5
-
69
-
-
0027442082
-
Characterization of 2,2′,3-trihydroxybiphenyl dioxygenase, an extradiol dioxygenase from the dibenzofuran- and dibenzo-p-dioxin-degrading bacterium Sphingomonas sp. strain RW1
-
Happe, B., Eltis, L.D., Poth, H., Hedderich, R., and Timmis, K.N. 1993. Characterization of 2,2′,3-trihydroxybiphenyl dioxygenase, an extradiol dioxygenase from the dibenzofuran- and dibenzo-p-dioxin-degrading bacterium Sphingomonas sp. strain RW1. J Bacteriol 175:7313-7320.
-
(1993)
J Bacteriol
, vol.175
, pp. 7313-7320
-
-
Happe, B.1
Eltis, L.D.2
Poth, H.3
Hedderich, R.4
Timmis, K.N.5
-
70
-
-
0024451702
-
Bacterial aromatic ring-cleavage enzymes are classified into two different gene families
-
Harayama, S., and Rekik, M. 1989. Bacterial aromatic ring-cleavage enzymes are classified into two different gene families. J Biol Chem 264:15328-15333.
-
(1989)
J Biol Chem
, vol.264
, pp. 15328-15333
-
-
Harayama, S.1
Rekik, M.2
-
71
-
-
0026805891
-
Functional and evolutionary relationships among diverse oxygenases
-
Harayama, S., Kok, M., and Neidle, E.L. 1992. Functional and evolutionary relationships among diverse oxygenases. Annu Rev Microbiol 46:565-601.
-
(1992)
Annu Rev Microbiol
, vol.46
, pp. 565-601
-
-
Harayama, S.1
Kok, M.2
Neidle, E.L.3
-
72
-
-
0025216788
-
Gentisate 1,2-dioxygenase from pseudomonas. Purification, characterization, and comparison of the enzymes from Pseudomonas testosteroni and Pseudomonas acidovorans
-
Harpel, M.R., and Lipscomb, J.D. 1990. Gentisate 1,2-dioxygenase from pseudomonas. Purification, characterization, and comparison of the enzymes from Pseudomonas testosteroni and Pseudomonas acidovorans. J Biol Chem 265:6301-6311.
-
(1990)
J Biol Chem
, vol.265
, pp. 6301-6311
-
-
Harpel, M.R.1
Lipscomb, J.D.2
-
73
-
-
0038159602
-
Characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a PCB and naphthalene-degrading Bacillus sp. JF8
-
Hatta, T., Mukerjee-Dhar, G., Damborsky, J., Kiyohara, H., and Kimbara, K. 2003. Characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a PCB and naphthalene-degrading Bacillus sp. JF8. J Biol Chem 278:21483-21492.
-
(2003)
J Biol Chem
, vol.278
, pp. 21483-21492
-
-
Hatta, T.1
Mukerjee-Dhar, G.2
Damborsky, J.3
Kiyohara, H.4
Kimbara, K.5
-
74
-
-
2442628211
-
II/alpha-ketoglutarate-dependent hydroxylases and related enzymes
-
II/alpha-ketoglutarate-dependent hydroxylases and related enzymes. Crit Rev Biochem Mol Biol 39:21-68.
-
(2004)
Crit Rev Biochem Mol Biol
, vol.39
, pp. 21-68
-
-
Hausinger, R.P.1
-
75
-
-
0002754238
-
Pyrocatecase, a new enzyme catalyzing oxidative breakdown of pyrocatechin
-
Hayaishi, O., and Hashimoto, K. 1950. Pyrocatecase, a new enzyme catalyzing oxidative breakdown of pyrocatechin. J Biochem 37:371-374.
-
(1950)
J Biochem
, vol.37
, pp. 371-374
-
-
Hayaishi, O.1
Hashimoto, K.2
-
76
-
-
0028840818
-
Characterization of a 2,3-dihydroxybiphenyl dioxygenase from the naphthalenesulfonate-degrading bacterium strain BN6
-
Heiss, G., Stolz, A., Kuhm, A.E., Müller, C., Klein, J., Altenbuchner, J., and Knackmuss, H.-J. 1995. Characterization of a 2,3-dihydroxybiphenyl dioxygenase from the naphthalenesulfonate-degrading bacterium strain BN6. J Bacteriol 177:5865-5871.
-
(1995)
J Bacteriol
, vol.177
, pp. 5865-5871
-
-
Heiss, G.1
Stolz, A.2
Kuhm, A.E.3
Müller, C.4
Klein, J.5
Altenbuchner, J.6
Knackmuss, H.-J.7
-
77
-
-
18544386401
-
Hypoxia-inducible factor (HIF) asparagine hydroxylase is identical to factor inhibiting HIF (FIH) and is related to the cupin structural family
-
Hewitson, K.S., McNeill, L.A., Riordan, M.V., Tian, Y.-M., Bullock, A.N., Welford, R.W., Elkins, J.M., Oldham, N.J., Bhattacharya, S., Gleadle, J.M., Ratcliffe, P.J., Pugh, C.W., and Schofield, C. J. 2002. Hypoxia-inducible factor (HIF) asparagine hydroxylase is identical to factor inhibiting HIF (FIH) and is related to the cupin structural family. J Biol Chem 277:26351-26355.
-
(2002)
J Biol Chem
, vol.277
, pp. 26351-26355
-
-
Hewitson, K.S.1
McNeill, L.A.2
Riordan, M.V.3
Tian, Y.-M.4
Bullock, A.N.5
Welford, R.W.6
Elkins, J.M.7
Oldham, N.J.8
Bhattacharya, S.9
Gleadle, J.M.10
Ratcliffe, P.J.11
Pugh, C.W.12
Schofield, C.J.13
-
78
-
-
0035161039
-
Direct ring fission of salicylate by a salicylate 1,2-dioxygenase activity from Pseudaminobacter salicylatoxidans
-
Hintner, J.P., Lechner, C., Riegert, U., Kuhm, A.E., Storm, T., Reemtsma, T., and Stolz, A. 2001. Direct ring fission of salicylate by a salicylate 1,2-dioxygenase activity from Pseudaminobacter salicylatoxidans. J Bacteriol 183:6936-6942.
-
(2001)
J Bacteriol
, vol.183
, pp. 6936-6942
-
-
Hintner, J.P.1
Lechner, C.2
Riegert, U.3
Kuhm, A.E.4
Storm, T.5
Reemtsma, T.6
Stolz, A.7
-
79
-
-
0016659231
-
Pathways for the degradation of m-cresol and p-cresol by Pseudomonas putida
-
Hopper, D.J., and Taylor, D.G. 1975. Pathways for the degradation of m-cresol and p-cresol by Pseudomonas putida. J Bacteriol 122:1-6.
-
(1975)
J Bacteriol
, vol.122
, pp. 1-6
-
-
Hopper, D.J.1
Taylor, D.G.2
-
80
-
-
0015867618
-
Kinetic studies on the reaction mechanism of dioxygenases
-
Hori, K. Hashimoto, T., and Nozaki, M. 1973. Kinetic studies on the reaction mechanism of dioxygenases. J Biochem 74:375-384.
-
(1973)
J Biochem
, vol.74
, pp. 375-384
-
-
Hori, K.1
Hashimoto, T.2
Nozaki, M.3
-
81
-
-
0035215760
-
Meta-cleavage enzyme gene testB is necessary for testosterone degradation in Comamonas testosteroni TA441
-
Horinouchi, M., Yamamoto, T., Taguchi, K., Arai, H., and Kudo, T. 2001. Meta-cleavage enzyme gene testB is necessary for testosterone degradation in Comamonas testosteroni TA441. Microbiology 147:3367-3375.
-
(2001)
Microbiology
, vol.147
, pp. 3367-3375
-
-
Horinouchi, M.1
Yamamoto, T.2
Taguchi, K.3
Arai, H.4
Kudo, T.5
-
82
-
-
28844499800
-
Spectroscopic studies of the anaerobic enzyme-substrate complex of catechol 1,2-dioxygenase
-
Horsman, G.P., Jirasek, A., Vaillancourt, F.H., Barbosa, C.J., Jarzecki, A.A., Xu, C., Mekmouche, Y., Spiro, T.G., Lipscomb, J.D., Blades, M.W., Turner, R.F., and Eltis, L.D. 2005. Spectroscopic studies of the anaerobic enzyme-substrate complex of catechol 1,2-dioxygenase. J Am Chem Soc 127:16882-16891.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 16882-16891
-
-
Horsman, G.P.1
Jirasek, A.2
Vaillancourt, F.H.3
Barbosa, C.J.4
Jarzecki, A.A.5
Xu, C.6
Mekmouche, Y.7
Spiro, T.G.8
Lipscomb, J.D.9
Blades, M.W.10
Turner, R.F.11
Eltis, L.D.12
-
83
-
-
0020636988
-
Control of catechol meta-cleavage pathway in Alcaligenes eutrophus
-
Hughes, E.J., and Bayly, R.C. 1983. Control of catechol meta-cleavage pathway in Alcaligenes eutrophus. J Bacteriol 154:1363-1370.
-
(1983)
J Bacteriol
, vol.154
, pp. 1363-1370
-
-
Hughes, E.J.1
Bayly, R.C.2
-
84
-
-
0033797755
-
Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: Evidence for their involvement in catechol dioxygenase reactivation
-
Hugo, N., Meyer, C., Armengaud, J., Gaillard, J., Timmis, K.N., and Jouanneau, Y. 2000. Characterization of three XylT-like [2Fe-2S] ferredoxins associated with catabolism of cresols or naphthalene: evidence for their involvement in catechol dioxygenase reactivation. J Bacteriol 182:5580-5585.
-
(2000)
J Bacteriol
, vol.182
, pp. 5580-5585
-
-
Hugo, N.1
Meyer, C.2
Armengaud, J.3
Gaillard, J.4
Timmis, K.N.5
Jouanneau, Y.6
-
85
-
-
0034724877
-
Steady-state kinetic characterization and crystallization of a polychlorinated biphenyl-transforming dioxygenase
-
Imbeault, N.Y.R., Powlowski, J.B., Colbert, C.L., Bolin, J.T., and Eltis, L.D. 2000. Steady-state kinetic characterization and crystallization of a polychlorinated biphenyl-transforming dioxygenase. J Biol Chem 275:12430-12437.
-
(2000)
J Biol Chem
, vol.275
, pp. 12430-12437
-
-
Imbeault, N.Y.R.1
Powlowski, J.B.2
Colbert, C.L.3
Bolin, J.T.4
Eltis, L.D.5
-
86
-
-
27544492782
-
Single-turnover kinetics of 2,3-dihydroxybiphenyl 1,2-dioxygenase reacting with 3-formylcatechol
-
Ishida, T., Senda, T., Tanaka, H., Yamamoto, A., and Horiike, K. 2005. Single-turnover kinetics of 2,3-dihydroxybiphenyl 1,2-dioxygenase reacting with 3-formylcatechol. Biochem Biophys Res Commun 338:223-229.
-
(2005)
Biochem Biophys Res Commun
, vol.338
, pp. 223-229
-
-
Ishida, T.1
Senda, T.2
Tanaka, H.3
Yamamoto, A.4
Horiike, K.5
-
87
-
-
0032478603
-
Biochemical and molecular characterization of 1-hydroxy-2-naphthoate dioxygenase from Nocardioides sp. KP7
-
Iwabuchi, T., and Harayama, S. 1998. Biochemical and molecular characterization of 1-hydroxy-2-naphthoate dioxygenase from Nocardioides sp. KP7. J Biol Chem 273:8332-8336.
-
(1998)
J Biol Chem
, vol.273
, pp. 8332-8336
-
-
Iwabuchi, T.1
Harayama, S.2
-
88
-
-
0027930350
-
Biodegradation of p-nitrophenol via 1,2,4-benzenetriol by an Arthrobacter sp.
-
Jain, R.K., Dreisbach, J.H., and Spain, J.C. 1994. Biodegradation of p-nitrophenol via 1,2,4-benzenetriol by an Arthrobacter sp. Appl Environ Microbiol 60:3030-3032.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 3030-3032
-
-
Jain, R.K.1
Dreisbach, J.H.2
Spain, J.C.3
-
89
-
-
0016612680
-
Initial reactions in the oxidation of naphthalene by Pseudomonas putida
-
Jeffrey, A.M., Yeh, H.J., Jerina, D.M., Patel, T.R., Davey, J.F., and Gibson, D.T. 1975. Initial reactions in the oxidation of naphthalene by Pseudomonas putida. Biochemistry 14:575-584.
-
(1975)
Biochemistry
, vol.14
, pp. 575-584
-
-
Jeffrey, A.M.1
Yeh, H.J.2
Jerina, D.M.3
Patel, T.R.4
Davey, J.F.5
Gibson, D.T.6
-
90
-
-
0025296680
-
Nucleotide sequence of metapyrocatechase I (catechol 2,3-oxygenase I) gene mpcl from Alcaligenes eutrophus JMP222
-
Kabisch, M., and Fortnagel, P. 1990. Nucleotide sequence of metapyrocatechase I (catechol 2,3-oxygenase I) gene mpcl from Alcaligenes eutrophus JMP222. Nucleic Acids Res 18:3405-3406.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 3405-3406
-
-
Kabisch, M.1
Fortnagel, P.2
-
91
-
-
22544457598
-
Characterization of the gallate dioxygenase gene: Three distinct ring cleavage dioxygenases are involved in syringate degradation by Sphingomonas paucimobilis SYK-6
-
Kasai, D., Masai, E., Miyauchi, K., Katayama, Y., and Fukuda, M. 2005. Characterization of the gallate dioxygenase gene: three distinct ring cleavage dioxygenases are involved in syringate degradation by Sphingomonas paucimobilis SYK-6. J Bacteriol 187:5067-5074.
-
(2005)
J Bacteriol
, vol.187
, pp. 5067-5074
-
-
Kasai, D.1
Masai, E.2
Miyauchi, K.3
Katayama, Y.4
Fukuda, M.5
-
92
-
-
0032524127
-
Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase
-
Kauppi, B., Lee, K., Carredano, E., Parales, R.E., Gibson, D.T., Eklund, H., and Ramaswamy, S. 1998. Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase. Structure 6:571-586.
-
(1998)
Structure
, vol.6
, pp. 571-586
-
-
Kauppi, B.1
Lee, K.2
Carredano, E.3
Parales, R.E.4
Gibson, D.T.5
Eklund, H.6
Ramaswamy, S.7
-
93
-
-
0017091903
-
Biodegradation of the phthalates and their esters by bacteria
-
Keyser, P., Pujar, B.G., Eaton, R.W., and Ribbons, D.W. 1976. Biodegradation of the phthalates and their esters by bacteria. Environ Health Perspect 18:159-166.
-
(1976)
Environ Health Perspect
, vol.18
, pp. 159-166
-
-
Keyser, P.1
Pujar, B.G.2
Eaton, R.W.3
Ribbons, D.W.4
-
94
-
-
0032814117
-
Novel family shuffling methods for the in vitro evolution of enzymes
-
Kikuchi, M., Ohnishi, K., and Harayama, S. 1999. Novel family shuffling methods for the in vitro evolution of enzymes. Gene 236:159-167.
-
(1999)
Gene
, vol.236
, pp. 159-167
-
-
Kikuchi, M.1
Ohnishi, K.2
Harayama, S.3
-
95
-
-
0033556265
-
An archetypical extradiol-cleaving catecholic dioxygenase: The crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Pseudomonas putida mt-2
-
Kita, A., Kita, S., Fujisawa, I., Inaka, K., Ishida, T., Horiike, K., Nozaki, M., and Miki, K. 1999. An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Pseudomonas putida mt-2. Structure 7:25-34.
-
(1999)
Structure
, vol.7
, pp. 25-34
-
-
Kita, A.1
Kita, S.2
Fujisawa, I.3
Inaka, K.4
Ishida, T.5
Horiike, K.6
Nozaki, M.7
Miki, K.8
-
96
-
-
0019509249
-
Degradation of 4-chlorophenylacetic acid by a Pseudomonas species
-
Klages, U., Markus, A., and Lingens, F. 1981. Degradation of 4-chlorophenylacetic acid by a Pseudomonas species. J Bacteriol 146:64-68.
-
(1981)
J Bacteriol
, vol.146
, pp. 64-68
-
-
Klages, U.1
Markus, A.2
Lingens, F.3
-
97
-
-
0019457548
-
Inhibition of catechol 2,3-dioxygenase from Pseudomonas putida by 3-chlorocatechol
-
Klecka, G.M., and Gibson, D.T. 1981. Inhibition of catechol 2,3-dioxygenase from Pseudomonas putida by 3-chlorocatechol. Appl Environ Microbiol 41:1159-1165.
-
(1981)
Appl Environ Microbiol
, vol.41
, pp. 1159-1165
-
-
Klecka, G.M.1
Gibson, D.T.2
-
98
-
-
0028988356
-
Overexpression of Pseudomonas putida catechol 2,3-dioxygenase with high specific activity by genetically engineered Escherichia coli
-
Kobayashi, T., Ishida, T., Horiike, K., Takahara, Y., Numao, N., Nakazawa, A., Nakazawa, T., and Nozaki, M. 1995. Overexpression of Pseudomonas putida catechol 2,3-dioxygenase with high specific activity by genetically engineered Escherichia coli. J Biochem 117:614-622.
-
(1995)
J Biochem
, vol.117
, pp. 614-622
-
-
Kobayashi, T.1
Ishida, T.2
Horiike, K.3
Takahara, Y.4
Numao, N.5
Nakazawa, A.6
Nakazawa, T.7
Nozaki, M.8
-
99
-
-
17644413773
-
The 2-His-1-carboxylate facial triad: A versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes
-
Koehntop, K.D., Emerson, J.P., and Que, L. Jr. 2005. The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes. J Biol Inorg Chem 10:87-93.
-
(2005)
J Biol Inorg Chem
, vol.10
, pp. 87-93
-
-
Koehntop, K.D.1
Emerson, J.P.2
Que Jr., L.3
-
100
-
-
78651128288
-
Metapyrocatechase: A new catechol-cleaving enzyme
-
Kojima, Y., Utada, N., and Hayaishi, O. 1961. Metapyrocatechase: a new catechol-cleaving enzyme. J Biol Chem 236:2223-2228.
-
(1961)
J Biol Chem
, vol.236
, pp. 2223-2228
-
-
Kojima, Y.1
Utada, N.2
Hayaishi, O.3
-
101
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P.J. 1991. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 24:945-949.
-
(1991)
J Appl Crystallogr
, vol.24
, pp. 945-949
-
-
Kraulis, P.J.1
-
102
-
-
0030012764
-
Catechol 2,3-dioxygenases functional in oxygen-limited (hypoxic) environments
-
Kukor, J.J., and Olsen, R.H. 1996. Catechol 2,3-dioxygenases functional in oxygen-limited (hypoxic) environments. Appl Environ Microbiol 62:1728-1740.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 1728-1740
-
-
Kukor, J.J.1
Olsen, R.H.2
-
103
-
-
0000465301
-
Nature of the defect in tyrosine metabolism in alcaptonuria
-
La Du, B.N., Zannoni, V.G., Laster, L., and Seegmiller, J.E. 1958. Nature of the defect in tyrosine metabolism in alcaptonuria. J Biol Chem 230:251-260.
-
(1958)
J Biol Chem
, vol.230
, pp. 251-260
-
-
La Du, B.N.1
Zannoni, V.G.2
Laster, L.3
Seegmiller, J.E.4
-
104
-
-
0028933323
-
Structure-function in Escherichia coli iron superoxide dismutase: Comparisons with the manganese enzyme from Thermus thermophilus
-
Lah, M.S., Dixon, M.M., Partridge, K.A., Stallings, W.C., Fee, J.A., and Ludwig, M.L. 1995. Structure-function in Escherichia coli iron superoxide dismutase: comparisons with the manganese enzyme from Thermus thermophilus. Biochemistry 34:1646-1660.
-
(1995)
Biochemistry
, vol.34
, pp. 1646-1660
-
-
Lah, M.S.1
Dixon, M.M.2
Partridge, K.A.3
Stallings, W.C.4
Fee, J.A.5
Ludwig, M.L.6
-
105
-
-
0029858048
-
2-aminophenol 1,6-dioxygenase: A novel aromatic ring cleavage enzyme purified from Pseudomonas pseudoalcaligenes JS45
-
Lendenmann, U., and Spain, J.C. 1996. 2-aminophenol 1,6-dioxygenase: a novel aromatic ring cleavage enzyme purified from Pseudomonas pseudoalcaligenes JS45. J Bacteriol 178:6227-6232.
-
(1996)
J Bacteriol
, vol.178
, pp. 6227-6232
-
-
Lendenmann, U.1
Spain, J.C.2
-
106
-
-
0034813032
-
Extradiol oxidative cleavage of catechols by ferrous and ferric complexes of 1,4,7-triazacyclononane: Insight into the mechanism of the extradiol catechol dioxygenases
-
Lin, G., Reid, G., and Bugg, T.D.H. 2001. Extradiol oxidative cleavage of catechols by ferrous and ferric complexes of 1,4,7-triazacyclononane: insight into the mechanism of the extradiol catechol dioxygenases. J Am Chem Soc 123:5030-5039.
-
(2001)
J Am Chem Soc
, vol.123
, pp. 5030-5039
-
-
Lin, G.1
Reid, G.2
Bugg, T.D.H.3
-
107
-
-
0000006176
-
Variable-temperature variable-field magnetic circular dichroism studies of the iron(II) active site in metapyrocatechase: Implications for the molecular mechanism of extradiol dioxygenases
-
Mabrouk, P.A., Orville, A.M., Lipscomb, J.D., and Solomon, E.I. 1991. Variable-temperature variable-field magnetic circular dichroism studies of the iron(II) active site in metapyrocatechase: implications for the molecular mechanism of extradiol dioxygenases. J Am Chem Soc 113:4053-4061.
-
(1991)
J Am Chem Soc
, vol.113
, pp. 4053-4061
-
-
Mabrouk, P.A.1
Orville, A.M.2
Lipscomb, J.D.3
Solomon, E.I.4
-
108
-
-
13844289384
-
Protocatechuate 4,5-dioxygenase from Comamonas testosteroni T-2: Biochemical and molecular properties of a new subgroup within class III of extradiol dioxygenases
-
Mampel J., Providenti, M.A., and Cook, A.M. 2005. Protocatechuate 4,5-dioxygenase from Comamonas testosteroni T-2: biochemical and molecular properties of a new subgroup within class III of extradiol dioxygenases. Arch Microbiol 183:130-139.
-
(2005)
Arch Microbiol
, vol.183
, pp. 130-139
-
-
Mampel, J.1
Providenti, M.A.2
Cook, A.M.3
-
109
-
-
0030743522
-
Microbial degradation of chloroaromatics: Use of the meta-cleavage pathway for mineralization of chlorobenzene
-
Mars, A.E., Kasberg, T., Kaschabek, S.R., van Agteren, M.H., Janssen D.B., and Reineke, W. 1997. Microbial degradation of chloroaromatics: use of the meta-cleavage pathway for mineralization of chlorobenzene. J Bacteriol 179:4530-4537.
-
(1997)
J Bacteriol
, vol.179
, pp. 4530-4537
-
-
Mars, A.E.1
Kasberg, T.2
Kaschabek, S.R.3
Van Agteren, M.H.4
Janssen, D.B.5
Reineke, W.6
-
110
-
-
0033064439
-
Conversion of 3-chlorocatechol by various catechol 2,3-dioxygenases and sequence analysis of the chlorocatechol dioxygenase region of Pseudomonas putida GJ31
-
Mars, A.E., Kingma, J., Kaschabek, S.R., Reineke, W., and Janssen, D.B. 1999. Conversion of 3-chlorocatechol by various catechol 2,3-dioxygenases and sequence analysis of the chlorocatechol dioxygenase region of Pseudomonas putida GJ31. J Bacteriol 181:1309-1318.
-
(1999)
J Bacteriol
, vol.181
, pp. 1309-1318
-
-
Mars, A.E.1
Kingma, J.2
Kaschabek, S.R.3
Reineke, W.4
Janssen, D.B.5
-
111
-
-
0034125740
-
Genetic investigation of the catabolic pathway for degradation of abietane diterpenoids by Pseudomonas abietaniphila BKME-9
-
Martin, V.J., and Mohn, W.W. 2000. Genetic investigation of the catabolic pathway for degradation of abietane diterpenoids by Pseudomonas abietaniphila BKME-9. J Bacteriol 182:3784-3793.
-
(2000)
J Bacteriol
, vol.182
, pp. 3784-3793
-
-
Martin, V.J.1
Mohn, W.W.2
-
112
-
-
0030120834
-
Degradation of 3-hydroxybenzoic acid by a Bacillus species
-
Mashetty, S.B., Manohar, S., and Karegoudar, T.B. 1996. Degradation of 3-hydroxybenzoic acid by a Bacillus species. Indian J Biochem Biophys 33:145-148.
-
(1996)
Indian J Biochem Biophys
, vol.33
, pp. 145-148
-
-
Mashetty, S.B.1
Manohar, S.2
Karegoudar, T.B.3
-
113
-
-
0026743341
-
The electron-transport proteins of hydroxylating bacterial dioxygenases
-
Mason, J.R., and Cammack, R. 1992. The electron-transport proteins of hydroxylating bacterial dioxygenases. Annu Rev Microbiol 46:277-305.
-
(1992)
Annu Rev Microbiol
, vol.46
, pp. 277-305
-
-
Mason, J.R.1
Cammack, R.2
-
114
-
-
0031571090
-
Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: The shape of the active-site cavity controls substrate specificity
-
Mattevi, A., Fraaije, M.W., Mozzarelli, A., Olivi, L., Coda, A., and van Berkel, W.J. 1997. Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity. Structure 5:907-920.
-
(1997)
Structure
, vol.5
, pp. 907-920
-
-
Mattevi, A.1
Fraaije, M.W.2
Mozzarelli, A.3
Olivi, L.4
Coda, A.5
Van Berkel, W.J.6
-
115
-
-
0017855249
-
Interaction of protocatechuate-3,4-dioxygenase with fluoro-substituted hydroxybenzoic acids and related compounds
-
May, S.W., Phillips, R.S., and Oldham, C.D. 1978. Interaction of protocatechuate-3,4-dioxygenase with fluoro-substituted hydroxybenzoic acids and related compounds. Biochemistry 17:1853-1860.
-
(1978)
Biochemistry
, vol.17
, pp. 1853-1860
-
-
May, S.W.1
Phillips, R.S.2
Oldham, C.D.3
-
116
-
-
0034928937
-
Crystal structure of methylmalonyl-coenzyme A epimerase from P. shermanii: A novel enzymatic function on an ancient metal binding scaffold
-
McCarthy, A.A., Baker, H.M., Shewry, S.C., Patchett, M.L., and Baker, E.N. 2001. Crystal structure of methylmalonyl-coenzyme A epimerase from P. shermanii: a novel enzymatic function on an ancient metal binding scaffold. Structure 9:637-646.
-
(2001)
Structure
, vol.9
, pp. 637-646
-
-
McCarthy, A.A.1
Baker, H.M.2
Shewry, S.C.3
Patchett, M.L.4
Baker, E.N.5
-
117
-
-
33746191929
-
The complete genome of Rhodococcus sp. RHA1: Insights into a catabolic powerhouse
-
submitted
-
McLeod, M.P., Warren, R.L., Araki, N., Hsiao, W.W.L., Myhre, M., Fernandes, C., Miyazawa, D., Wong, W., Lillquist, A.L., Wang, D., Dosanjh, M., Hara, H., Petrescu, A., Morin, R.D., Yang, G., Stott, J.M., Schein, J.E., Shin, H., Smailus, D., Siddiqui, A.S., Marra, M.A., Jones, S.J.M., Holt, R., Brinkman, F.S.L., Miyauchi, K., Fukuda, M., Davies, J.E., Mohn, W.W., and Eltis L.D. 2006. The complete genome of Rhodococcus sp. RHA1 : insights into a catabolic powerhouse. Proc Natl Acad Sci USA (submitted).
-
(2006)
Proc Natl Acad Sci USA
-
-
McLeod, M.P.1
Warren, R.L.2
Araki, N.3
Hsiao, W.W.L.4
Myhre, M.5
Fernandes, C.6
Miyazawa, D.7
Wong, W.8
Lillquist, A.L.9
Wang, D.10
Dosanjh, M.11
Hara, H.12
Petrescu, A.13
Morin, R.D.14
Yang, G.15
Stott, J.M.16
Schein, J.E.17
Shin, H.18
Smailus, D.19
Siddiqui, A.S.20
Marra, M.A.21
Jones, S.J.M.22
Holt, R.23
Brinkman, F.S.L.24
Miyauchi, K.25
Fukuda, M.26
Davies, J.E.27
Mohn, W.W.28
Eltis, L.D.29
more..
-
119
-
-
6344291632
-
Acid-base catalysis in the extradiol catechol dioxygenase reaction mechanism: Site-directed mutagenesis of His-115 and His-179 in Escherichia coli 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB)
-
Mendel, S., Arndt, A., and Bugg, T.D. 2004. Acid-base catalysis in the extradiol catechol dioxygenase reaction mechanism: site-directed mutagenesis of His-115 and His-179 in Escherichia coli 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB). Biochemistry 43:13390-13396.
-
(2004)
Biochemistry
, vol.43
, pp. 13390-13396
-
-
Mendel, S.1
Arndt, A.2
Bugg, T.D.3
-
120
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
Merritt, E.A., and Bacon, D.J. 1997. Raster3D: photorealistic molecular graphics. Methods Enzymol 277:505-524.
-
(1997)
Methods Enzymol
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
-
121
-
-
0029740369
-
Crystal structure of soybean lipoxygenase L-1 at 1.4 Å resolution
-
Minor, W., Steczko, J., Stec, B., Otwinowski, Z., Bolin, J.T., Walter, R., and Axelrod, B. 1996. Crystal structure of soybean lipoxygenase L-1 at 1.4 Å resolution. Biochemistry 35:10687-10701.
-
(1996)
Biochemistry
, vol.35
, pp. 10687-10701
-
-
Minor, W.1
Steczko, J.2
Stec, B.3
Otwinowski, Z.4
Bolin, J.T.5
Walter, R.6
Axelrod, B.7
-
122
-
-
0000634188
-
Inactivation during functioning of 3-hydroxyanthranilate oxidase resulting from oxidation of bound ferrous iron
-
Mitchell, R.A., Kang, H.H., and Henderson, L.M. 1963. Inactivation during functioning of 3-hydroxyanthranilate oxidase resulting from oxidation of bound ferrous iron. J Biol Chem 238:1151-1155.
-
(1963)
J Biol Chem
, vol.238
, pp. 1151-1155
-
-
Mitchell, R.A.1
Kang, H.H.2
Henderson, L.M.3
-
123
-
-
0032704711
-
Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis
-
Miyauchi, K., Adachi, Y., Nagata, Y., and Takagi, M. 1999. Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis. J Bacteriol 181:6712-6719.
-
(1999)
J Bacteriol
, vol.181
, pp. 6712-6719
-
-
Miyauchi, K.1
Adachi, Y.2
Nagata, Y.3
Takagi, M.4
-
124
-
-
1942505335
-
Genes for Mn(II)-dependent NahC and Fe(II)-dependent NahH located in close proximity in the thermophilic naphthalene and PCB degrader, Bacillus sp. JF8: Cloning and characterization
-
Miyazawa, D., Mukerjee-Dhar, G., Shimura, M., Hatta, T., and Kimbara, K. 2004. Genes for Mn(II)-dependent NahC and Fe(II)-dependent NahH located in close proximity in the thermophilic naphthalene and PCB degrader, Bacillus sp. JF8: cloning and characterization. Microbiology 150:993-1004.
-
(2004)
Microbiology
, vol.150
, pp. 993-1004
-
-
Miyazawa, D.1
Mukerjee-Dhar, G.2
Shimura, M.3
Hatta, T.4
Kimbara, K.5
-
125
-
-
0035101009
-
Reinvestigation of a new type of aerobic benzoate metabolism in the proteobacterium Azoarcus evansii
-
Mohamed, M.E., Zaar, A., Ebenau-Jehle, C., and Fuchs, G. 2001. Reinvestigation of a new type of aerobic benzoate metabolism in the proteobacterium Azoarcus evansii. J Bacteriol 183:1899-1908.
-
(2001)
J Bacteriol
, vol.183
, pp. 1899-1908
-
-
Mohamed, M.E.1
Zaar, A.2
Ebenau-Jehle, C.3
Fuchs, G.4
-
126
-
-
0037338581
-
Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7
-
Muraki, T., Taki, M., Hasegawa, Y., Iwaki, H., and Lau, P.C. 2003. Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7. Appl Environ Microbiol 69:1564-1572.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 1564-1572
-
-
Muraki, T.1
Taki, M.2
Hasegawa, Y.3
Iwaki, H.4
Lau, P.C.5
-
127
-
-
0015521998
-
The metabolism of benzoate and methylbenzoates via the meta-cleavage pathway by Pseudomonas arvilla mt-2
-
Murray, K., Duggleby, C.J., Sala-Trepat, J.M., and Williams, P.A. 1972. The metabolism of benzoate and methylbenzoates via the meta-cleavage pathway by Pseudomonas arvilla mt-2. Eur J Biochem 28:301-310.
-
(1972)
Eur J Biochem
, vol.28
, pp. 301-310
-
-
Murray, K.1
Duggleby, C.J.2
Sala-Trepat, J.M.3
Williams, P.A.4
-
128
-
-
21144442133
-
The catabolism of phenylacetic acid in Rhodococcus RHA1
-
Navarro-Llorens, J.M., Patrauchan, M.A., Stewart, G.R., Davies, J., Eltis, L.D., and Mohn, W.W. 2005. The catabolism of phenylacetic acid in Rhodococcus RHA1. J Bacteriol 187:4497-4504.
-
(2005)
J Bacteriol
, vol.187
, pp. 4497-4504
-
-
Navarro-Llorens, J.M.1
Patrauchan, M.A.2
Stewart, G.R.3
Davies, J.4
Eltis, L.D.5
Mohn, W.W.6
-
129
-
-
29644436741
-
-
Ph.D. thesis, Purdue University
-
Neau, D.B. 2004. Structural studies of the 1,2-dihydroxynaphthalene dioxygenase, DoxG, reveal features that permit the cleavage of 4-substituted catechols. Ph.D. thesis, Purdue University.
-
(2004)
Structural Studies of the 1,2-dihydroxynaphthalene Dioxygenase, DoxG, Reveal Features That Permit the Cleavage of 4-substituted Catechols
-
-
Neau, D.B.1
-
130
-
-
27444438472
-
Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440. The prototype of a new subgroup of extradiol dioxygenases
-
Nogales, J., Canales, A., Jimenez-Barbero, J., Garcia, J.L., and Diaz, E. 2005. Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440. The prototype of a new subgroup of extradiol dioxygenases. J Biol Chem 280:35382-35390.
-
(2005)
J Biol Chem
, vol.280
, pp. 35382-35390
-
-
Nogales, J.1
Canales, A.2
Jimenez-Barbero, J.3
Garcia, J.L.4
Diaz, E.5
-
131
-
-
32044453568
-
Novel 4-chlorophenol degradation gene cluster and degradation route via hydroxyquinol in Arthrobacter chlorophenolicus A6
-
Nordin, K., Unell, M., and Jansson, J.K. 2005. Novel 4-chlorophenol degradation gene cluster and degradation route via hydroxyquinol in Arthrobacter chlorophenolicus A6. Appl Environ Microbiol 71:6538-6544.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 6538-6544
-
-
Nordin, K.1
Unell, M.2
Jansson, J.K.3
-
132
-
-
4544261979
-
L-3,4-Dihydroxyphenyl alanine-extradiol cleavage is followed by intramolecular cyclization in lincomycin biosynthesis
-
Novotna, J., Honzatko, A., Bednar, P., Kopecky, J., Janata, J., and Spizek, J. 2004. L-3,4-Dihydroxyphenyl alanine-extradiol cleavage is followed by intramolecular cyclization in lincomycin biosynthesis. Eur J Biochem 271:3678-3683.
-
(2004)
Eur J Biochem
, vol.271
, pp. 3678-3683
-
-
Novotna, J.1
Honzatko, A.2
Bednar, P.3
Kopecky, J.4
Janata, J.5
Spizek, J.6
-
133
-
-
78651128985
-
Metapyrocatechase. I. Purification, crystallization, and some properties
-
Nozaki, M., Kagamiyama, H., and Hayaishi, O. 1963. Metapyrocatechase. I. Purification, crystallization, and some properties. Biochem Z 338:582-590.
-
(1963)
Biochem Z
, vol.338
, pp. 582-590
-
-
Nozaki, M.1
Kagamiyama, H.2
Hayaishi, O.3
-
134
-
-
0014429573
-
Metapyrocatechase II. The role of iron and sulfhydryl groups
-
Nozaki, M., Katsushiko, K., Nakazawa, T., Kotani, S., and Hayaishi, O. 1968. Metapyrocatechase II. The role of iron and sulfhydryl groups. J Biol Chem 243:2682-2690.
-
(1968)
J Biol Chem
, vol.243
, pp. 2682-2690
-
-
Nozaki, M.1
Katsushiko, K.2
Nakazawa, T.3
Kotani, S.4
Hayaishi, O.5
-
135
-
-
33746216374
-
Protocatechuate 3,4-dioxygenase
-
Messerschmidt, A., Huber, R., Poulos, T., and Wieghardt, K. eds. Chichester, UK: John Wiley & Sons
-
Ohlendorf, D.H., and Vetting, M.W. 2001. Protocatechuate 3,4-dioxygenase. In: Handbook of Metalloproteins. Messerschmidt, A., Huber, R., Poulos, T., and Wieghardt, K. eds. Chichester, UK: John Wiley & Sons, pp. 622-631
-
(2001)
Handbook of Metalloproteins
, pp. 622-631
-
-
Ohlendorf, D.H.1
Vetting, M.W.2
-
136
-
-
0024296029
-
Structure and assembly of protocatechuate 3,4-dioxygenase
-
Ohlendorf, D.H., Lipscomb, J.D., and Weber, P.C. 1988. Structure and assembly of protocatechuate 3,4-dioxygenase. Nature 336:403-405.
-
(1988)
Nature
, vol.336
, pp. 403-405
-
-
Ohlendorf, D.H.1
Lipscomb, J.D.2
Weber, P.C.3
-
137
-
-
0028067892
-
Structure of protocatechuate 3,4-dioxygenase from Pseudomonas aeruginosa at 2.15 Å resolution
-
Ohlendorf, D.H., Orville, A.M., and Lipscomb, J.D. 1994. Structure of protocatechuate 3,4-dioxygenase from Pseudomonas aeruginosa at 2.15 Å resolution. J Mol Biol 244:586-608.
-
(1994)
J Mol Biol
, vol.244
, pp. 586-608
-
-
Ohlendorf, D.H.1
Orville, A.M.2
Lipscomb, J.D.3
-
138
-
-
1942455828
-
Molecular breeding of 2,3-dihydroxybiphenyl 1,2-dioxygenase for enhanced resistance to 3-chlorocatechol
-
Ohnishi, K., Okuta, A., Ju, J., Hamada, T., Misono, H., and Harayama, S. 2004. Molecular breeding of 2,3-dihydroxybiphenyl 1,2-dioxygenase for enhanced resistance to 3-chlorocatechol. J Biochem (Tokyo) 135:305-317.
-
(2004)
J Biochem (Tokyo)
, vol.135
, pp. 305-317
-
-
Ohnishi, K.1
Okuta, A.2
Ju, J.3
Hamada, T.4
Misono, H.5
Harayama, S.6
-
139
-
-
0032496652
-
PCR isolation of catechol 2,3-dioxygenase gene fragments from environmental samples and their assembly into functional genes
-
Okuta, A., Ohnishi, K., and Harayama, S. 1998. PCR isolation of catechol 2,3-dioxygenase gene fragments from environmental samples and their assembly into functional genes. Gene 212:221-228.
-
(1998)
Gene
, vol.212
, pp. 221-228
-
-
Okuta, A.1
Ohnishi, K.2
Harayama, S.3
-
140
-
-
1642340533
-
Construction of chimeric catechol 2,3-dioxygenase exhibiting improved activity against the suicide inhibitor 4-methylcatechol
-
Okuta, A., Ohnishi, K., and Harayama, S. 2004. Construction of chimeric catechol 2,3-dioxygenase exhibiting improved activity against the suicide inhibitor 4-methylcatechol. Appl Environ Microbiol 70:1804-1810.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1804-1810
-
-
Okuta, A.1
Ohnishi, K.2
Harayama, S.3
-
141
-
-
0014941894
-
Purification and some properties of protocatechuate 4,5-dioxygenase
-
Ono, K., Nozaki, M., and Hayaishi, O. 1970. Purification and some properties of protocatechuate 4,5-dioxygenase. Biochim Biophys Acta 220:224-238.
-
(1970)
Biochim Biophys Acta
, vol.220
, pp. 224-238
-
-
Ono, K.1
Nozaki, M.2
Hayaishi, O.3
-
142
-
-
0030664538
-
Cyanide and nitric oxide binding to reduced protocatechuate 3,4-dioxygenase: Insight into the basis for order-dependent ligand binding by intradiol catecholic dioxygenases
-
Orville, A.M., and Lipscomb, J.D. 1997. Cyanide and nitric oxide binding to reduced protocatechuate 3,4-dioxygenase: insight into the basis for order-dependent ligand binding by intradiol catecholic dioxygenases. Biochemistry 36:14044-14055.
-
(1997)
Biochemistry
, vol.36
, pp. 14044-14055
-
-
Orville, A.M.1
Lipscomb, J.D.2
-
144
-
-
0019294951
-
Metabolism of 6-chlorotryptophan to 4-chloro-3-hydroxyanthranilic acid: A potent inhibitor of 3-hydroxyanthranilic acid oxidase
-
Parli, C.J., Krieter, P. and Schmidt, B. 1980. Metabolism of 6-chlorotryptophan to 4-chloro-3-hydroxyanthranilic acid: a potent inhibitor of 3-hydroxyanthranilic acid oxidase. Arch Biochem Biophys 203:161-166.
-
(1980)
Arch Biochem Biophys
, vol.203
, pp. 161-166
-
-
Parli, C.J.1
Krieter, P.2
Schmidt, B.3
-
145
-
-
0343998989
-
Mechanism-based inactivation of catechol 2,3-dioxygenase by 3-[(methylthio)methyl]catechol
-
Pascal, R.A., and Huang, D.-S. 1987. Mechanism-based inactivation of catechol 2,3-dioxygenase by 3-[(methylthio)methyl]catechol. J Am Chem Soc 109:2854-2855.
-
(1987)
J Am Chem Soc
, vol.109
, pp. 2854-2855
-
-
Pascal, R.A.1
Huang, D.-S.2
-
146
-
-
0036895878
-
Modeling and experiment yields the structure of acire-ductone dioxygenase from Klebsiella pneumoniae
-
Pochapsky, T.C., Pochapsky, S.S., Ju, T., Mo, H., Al-Mjeni, F., and Maroney, M.J. 2002. Modeling and experiment yields the structure of acire-ductone dioxygenase from Klebsiella pneumoniae. Nat Struct Biol 9:966-972.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 966-972
-
-
Pochapsky, T.C.1
Pochapsky, S.S.2
Ju, T.3
Mo, H.4
Al-Mjeni, F.5
Maroney, M.J.6
-
147
-
-
0027308193
-
In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin: A bacterial strategy to expand the substrate specificity of aromatic degradative pathways
-
Polissi, A., and Harayama, S. 1993. In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin: a bacterial strategy to expand the substrate specificity of aromatic degradative pathways. EMBO J 12:3339-3347.
-
(1993)
EMBO J
, vol.12
, pp. 3339-3347
-
-
Polissi, A.1
Harayama, S.2
-
148
-
-
0030981938
-
Molecular characterization of genes of Pseudomonas sp. strain HR199 involved in bioconversion of vanillin to protocatechuate
-
Priefert, H., Rabenhorst, J., and Steinbuchel, A. 1997. Molecular characterization of genes of Pseudomonas sp. strain HR199 involved in bioconversion of vanillin to protocatechuate. J Bacteriol 179:2595-2607.
-
(1997)
J Bacteriol
, vol.179
, pp. 2595-2607
-
-
Priefert, H.1
Rabenhorst, J.2
Steinbuchel, A.3
-
149
-
-
0019890089
-
Resonance Raman studies on protocatechuate 3,4-dioxygenase-inhibitor complexes
-
Que, L., Jr., and Epstein, R.M. 1981. Resonance Raman studies on protocatechuate 3,4-dioxygenase-inhibitor complexes. Biochemistry 20:2545-2549.
-
(1981)
Biochemistry
, vol.20
, pp. 2545-2549
-
-
Que Jr., L.1
Epstein, R.M.2
-
150
-
-
0039302669
-
Dioxygen activation by enzymes with mononuclear non-heme iron active sites
-
Que, L., Jr., and Ho, R.Y.N. 1996. Dioxygen activation by enzymes with mononuclear non-heme iron active sites. Chem Rev 96:2607-2624.
-
(1996)
Chem Rev
, vol.96
, pp. 2607-2624
-
-
Que Jr., L.1
Ho, R.Y.N.2
-
151
-
-
0033629050
-
Manganese(II)-dependent extradiol-cleaving catechol dioxygenases
-
Que, L., Jr., and Reynolds, M.F. 2000. Manganese(II)-dependent extradiol-cleaving catechol dioxygenases. Met Ions Biol Syst 37:505-525.
-
(2000)
Met Ions Biol Syst
, vol.37
, pp. 505-525
-
-
Que Jr., L.1
Reynolds, M.F.2
-
152
-
-
0017672048
-
Protocatechuate 3,4-dioxygenase. Inhibitor studies and mechanistic implications
-
Que, L., Jr., Lipscomb, J.D., Münck, E., and Wood, J.M. 1977. Protocatechuate 3,4-dioxygenase. Inhibitor studies and mechanistic implications. Biochim Biophys Acta 485:60-74.
-
(1977)
Biochim Biophys Acta
, vol.485
, pp. 60-74
-
-
Que Jr., L.1
Lipscomb, J.D.2
Münck, E.3
Wood, J.M.4
-
153
-
-
0032461201
-
Distal cleavage of 3-chlorocatechol by an extradiol dioxygenase to 3-chloro-2-hydroxymuconic semialdehyde
-
Riegert, U., Heiss, G., Fischer, P., and Stolz, A. 1998. Distal cleavage of 3-chlorocatechol by an extradiol dioxygenase to 3-chloro-2-hydroxymuconic semialdehyde. J Bacteriol 180:2849-2853.
-
(1998)
J Bacteriol
, vol.180
, pp. 2849-2853
-
-
Riegert, U.1
Heiss, G.2
Fischer, P.3
Stolz, A.4
-
154
-
-
0030947388
-
Structure of isopenicillin N synthase complexed with substrate and the mechanism of penicillin formation
-
Roach, P.L., Clifton, I.J., Hensgens, C.M., Shibata, N., Schofield, C.J., Hajdu, J., and Baldwin, J.E. 1997. Structure of isopenicillin N synthase complexed with substrate and the mechanism of penicillin formation. Nature 387:827-830.
-
(1997)
Nature
, vol.387
, pp. 827-830
-
-
Roach, P.L.1
Clifton, I.J.2
Hensgens, C.M.3
Shibata, N.4
Schofield, C.J.5
Hajdu, J.6
Baldwin, J.E.7
-
155
-
-
0023644204
-
Assemblage of ortho cleavage route for simultaneous degradation of chloro- and methylaromatics
-
Rojo, F., Pieper, D.H., Engesser, K.H., Knackmuss, H.-J., and Timmis, K.N. 1987. Assemblage of ortho cleavage route for simultaneous degradation of chloro- and methylaromatics. Science 238:1395-1398.
-
(1987)
Science
, vol.238
, pp. 1395-1398
-
-
Rojo, F.1
Pieper, D.H.2
Engesser, K.H.3
Knackmuss, H.-J.4
Timmis, K.N.5
-
156
-
-
0025115933
-
Subcloning and nucleotide sequence of the 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase gene from Escherichia coli C
-
Roper, D.I., and Cooper, R.A. 1990. Subcloning and nucleotide sequence of the 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase gene from Escherichia coli C. FEBS Lett 275:53-57.
-
(1990)
FEBS Lett
, vol.275
, pp. 53-57
-
-
Roper, D.I.1
Cooper, R.A.2
-
157
-
-
0028835678
-
Mechanism of extradiol catechol dioxygenases: Evidence for a lactone intermediate in the 2,3-dihydroxyphenylpropionate 1,2-dioxygenase reaction
-
Sanvoisin, J., Langley, G.J., and Bugg, T.D.H. 1995. Mechanism of extradiol catechol dioxygenases: evidence for a lactone intermediate in the 2,3-dihydroxyphenylpropionate 1,2-dioxygenase reaction. J Am Chem Soc
-
(1995)
J Am Chem Soc
, vol.117
, pp. 7836-7837
-
-
Sanvoisin, J.1
Langley, G.J.2
Bugg, T.D.H.3
-
158
-
-
0036965765
-
Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase
-
Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., and Senda, T. 2002. Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase. J Mol Biol 321:621-636.
-
(2002)
J Mol Biol
, vol.321
, pp. 621-636
-
-
Sato, N.1
Uragami, Y.2
Nishizaki, T.3
Takahashi, Y.4
Sazaki, G.5
Sugimoto, K.6
Nonaka, T.7
Masai, E.8
Fukuda, M.9
Senda, T.10
-
159
-
-
0024024251
-
3-Hydroxyanthranilate oxygenase activity is increased in the brains of Huntington disease victims
-
Schwarcz, R., Okuno, E., White, R.J., Bird, E.D., and Whetsell, W.O. Jr. 1988. 3-Hydroxyanthranilate oxygenase activity is increased in the brains of Huntington disease victims. Proc Natl Acad Sci USA 85:4079-4081.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 4079-4081
-
-
Schwarcz, R.1
Okuno, E.2
White, R.J.3
Bird, E.D.4
Whetsell Jr., W.O.5
-
160
-
-
3242811958
-
Mechanism for catechol ring-cleavage by non-heme iron extradiol dioxygenases
-
Siegbahn, P.E., and Haeffner, F. 2004. Mechanism for catechol ring-cleavage by non-heme iron extradiol dioxygenases. J Am Chem Soc 126:8919-8932.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 8919-8932
-
-
Siegbahn, P.E.1
Haeffner, F.2
-
161
-
-
0030008087
-
Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102
-
Senda, T., Sugiyama, K., Narita, H., Yamamoto, T., Kimbara, K., Fukuda, M., Sato, M., Yano, K., and Mitsui, Y. 1996. Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102. J Mol Biol 255:735-752.
-
(1996)
J Mol Biol
, vol.255
, pp. 735-752
-
-
Senda, T.1
Sugiyama, K.2
Narita, H.3
Yamamoto, T.4
Kimbara, K.5
Fukuda, M.6
Sato, M.7
Yano, K.8
Mitsui, Y.9
-
162
-
-
0033566995
-
Crystal structure of Pseudomonas fluorescens 4-hydroxyphenylpyruvate dioxygenase: An enzyme involved in the tyrosine degradation pathway
-
Serre, L., Sailland, A., Sy, D., Boudec, P., Rolland, A., Pebay-Peyroula, E., and Cohen-Addad, C. 1999. Crystal structure of Pseudomonas fluorescens 4-hydroxyphenylpyruvate dioxygenase: an enzyme involved in the tyrosine degradation pathway. Structure 7:977-988.
-
(1999)
Structure
, vol.7
, pp. 977-988
-
-
Serre, L.1
Sailland, A.2
Sy, D.3
Boudec, P.4
Rolland, A.5
Pebay-Peyroula, E.6
Cohen-Addad, C.7
-
163
-
-
0029038688
-
X-ray absorption spectroscopic studies of the Fe(II) active site of catechol 2,3-dioxygenase. Implications for the extradiol cleavage mechanism
-
Shu, L., Chiou, Y.-M., Orville, A.M., Miller, M.A., Lipscomb, J.D., and Que, L. Jr. 1995. X-ray absorption spectroscopic studies of the Fe(II) active site of catechol 2,3-dioxygenase. Implications for the extradiol cleavage mechanism. Biochemistry 34:6649-6659.
-
(1995)
Biochemistry
, vol.34
, pp. 6649-6659
-
-
Shu, L.1
Chiou, Y.-M.2
Orville, A.M.3
Miller, M.A.4
Lipscomb, J.D.5
Que Jr., L.6
-
164
-
-
0000208617
-
Geometric and electronic structure/function correlations in non-heme iron enzymes
-
Solomon, E.I., Brunold, T.C., Davis, M.I., Kemsley, J.N., Lee, S.-K., Lehnert, N., Neese, F., Skulan, A.J., Yang, Y.-S., and Zhou, J. 2000. Geometric and electronic structure/function correlations in non-heme iron enzymes. Chem Rev 100:235-349.
-
(2000)
Chem Rev
, vol.100
, pp. 235-349
-
-
Solomon, E.I.1
Brunold, T.C.2
Davis, M.I.3
Kemsley, J.N.4
Lee, S.-K.5
Lehnert, N.6
Neese, F.7
Skulan, A.J.8
Yang, Y.-S.9
Zhou, J.10
-
165
-
-
0029789393
-
Catechol dioxygenases from Escherichia coli (MhpB) and Alcaligenes eutrophus (Mpcl): Sequence analysis and biochemical properties of a third family of extradiol dioxygenases
-
Spence, E.L., Kawamukai, M., Sanvoisin, J., Braven, H., and Bugg, T.D.H. 1996a. Catechol dioxygenases from Escherichia coli (MhpB) and Alcaligenes eutrophus (Mpcl): sequence analysis and biochemical properties of a third family of extradiol dioxygenases. J Bacteriol 178:5249-5256.
-
(1996)
J Bacteriol
, vol.178
, pp. 5249-5256
-
-
Spence, E.L.1
Kawamukai, M.2
Sanvoisin, J.3
Braven, H.4
Bugg, T.D.H.5
-
166
-
-
0029836348
-
Cis-Trans isomerization of a cyclopropyl radical trap catalyzed by extradiol catechol dioxygenases: Evidence for a semiquinone intermediate
-
Spence, E.L., Langley, G.J., and Bugg, T.D.H. 1996b. Cis-Trans isomerization of a cyclopropyl radical trap catalyzed by extradiol catechol dioxygenases: evidence for a semiquinone intermediate. J Am Chem Soc 118:8336-8343.
-
(1996)
J Am Chem Soc
, vol.118
, pp. 8336-8343
-
-
Spence, E.L.1
Langley, G.J.2
Bugg, T.D.H.3
-
167
-
-
78651051471
-
Protocatechuic acid oxidase
-
Stanier, R.Y., and Ingraham, J.L. 1954. Protocatechuic acid oxidase. J Biol Chem 210:799-808.
-
(1954)
J Biol Chem
, vol.210
, pp. 799-808
-
-
Stanier, R.Y.1
Ingraham, J.L.2
-
168
-
-
0026546468
-
Bacterial metabolism of 5-aminosalicylic acid. Initial ring cleavage
-
Stolz, A., Nortemann, B., and Knackmuss, H.-J. 1992. Bacterial metabolism of 5-aminosalicylic acid. Initial ring cleavage. Biochem 7282:675-680.
-
(1992)
Biochem
, vol.7282
, pp. 675-680
-
-
Stolz, A.1
Nortemann, B.2
Knackmuss, H.-J.3
-
169
-
-
0033566802
-
Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions
-
Sugimoto, K., Senda, T., Aoshima, H., Masai, E., Fukuda, M., and Mitsui, Y. 1999. Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions. Structure 7:953-965.
-
(1999)
Structure
, vol.7
, pp. 953-965
-
-
Sugimoto, K.1
Senda, T.2
Aoshima, H.3
Masai, E.4
Fukuda, M.5
Mitsui, Y.6
-
170
-
-
0030990383
-
Novel genes encoding 2-aminophenol 1,6-dioxygenase from Pseudomonas species AP-3 growing on 2-aminophenol and catalytic properties of the purified enzyme
-
Takenaka, S., Murakami, S., Shinke, R., Hatakeyama, K., Yukawa, H., and Aoki, K. 1997. Novel genes encoding 2-aminophenol 1,6-dioxygenase from Pseudomonas species AP-3 growing on 2-aminophenol and catalytic properties of the purified enzyme. J Biol Chem 272:14727-14732.
-
(1997)
J Biol Chem
, vol.272
, pp. 14727-14732
-
-
Takenaka, S.1
Murakami, S.2
Shinke, R.3
Hatakeyama, K.4
Yukawa, H.5
Aoki, K.6
-
171
-
-
0027939425
-
Designing microorganisms for the treatment of toxic wastes
-
Timmis, K.N., Steffan, R.J., and Unterman, R. 1994. Designing microorganisms for the treatment of toxic wastes. Annu Rev Microbiol 48:525-557.
-
(1994)
Annu Rev Microbiol
, vol.48
, pp. 525-557
-
-
Timmis, K.N.1
Steffan, R.J.2
Unterman, R.3
-
172
-
-
0033948280
-
Crystal structure of human homogentisate dioxygenase
-
Titus, G.P., Mueller, H.A., Burgner, J., Rodriguez de Cordoba, S., Penalva, M.A., and Timm, D.E. 2000. Crystal structure of human homogentisate dioxygenase. Nat Struct Biol 7:542-546.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 542-546
-
-
Titus, G.P.1
Mueller, H.A.2
Burgner, J.3
Rodriguez De Cordoba, S.4
Penalva, M.A.5
Timm, D.E.6
-
173
-
-
0036118468
-
Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31
-
Tropel, D., Meyer, C., Armengaud, J., and Jouanneau, Y. 2002. Ferredoxin-mediated reactivation of the chlorocatechol 2,3-dioxygenase from Pseudomonas putida GJ31. Arch Microbiol 177:345-351.
-
(2002)
Arch Microbiol
, vol.177
, pp. 345-351
-
-
Tropel, D.1
Meyer, C.2
Armengaud, J.3
Jouanneau, Y.4
-
174
-
-
0025633650
-
An EXAFS study of the interaction of substrate with the ferric active site of protocatechuate 3,4-dioxygenase
-
True, A.E., Orville, A.M., Pearce, L.L., Lipscomb, J.D., and Que, L.Jr. 1990. An EXAFS study of the interaction of substrate with the ferric active site of protocatechuate 3,4-dioxygenase. Biochemistry 29:10847-10854.
-
(1990)
Biochemistry
, vol.29
, pp. 10847-10854
-
-
True, A.E.1
Orville, A.M.2
Pearce, L.L.3
Lipscomb, J.D.4
Que Jr., L.5
-
175
-
-
0016608457
-
4-Nitrocatechol as a colorimetric probe for non-heme iron dioxygenases
-
Tyson, C.A. 1975. 4-Nitrocatechol as a colorimetric probe for non-heme iron dioxygenases. J Biol Chem 250:1765-1770.
-
(1975)
J Biol Chem
, vol.250
, pp. 1765-1770
-
-
Tyson, C.A.1
-
176
-
-
0035114170
-
Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase
-
Uragami, Y., Senda, T., Sugimoto, K., Sato, N., Nagarajan, V., Masai, E., Fukuda, M., and Mitsui, Y. 2001. Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase. J Inorg Biochem 83:269-279.
-
(2001)
J Inorg Biochem
, vol.83
, pp. 269-279
-
-
Uragami, Y.1
Senda, T.2
Sugimoto, K.3
Sato, N.4
Nagarajan, V.5
Masai, E.6
Fukuda, M.7
Mitsui, Y.8
-
177
-
-
0037139492
-
Definitive evidence for monoanionic binding of 2,3-dihydroxybiphenyl to 2,3-dihydroxybiphenyl 1,2-dioxygenase from UV resonance Raman spectroscopy, UV/Vis absorption spectroscopy, and crystallography
-
Vaillancourt, F.H., Barbosa, C.J., Spiro, T.G., Bolin, J.T., Blades, M.W., Turner, R.F.B., and Eltis, L.D. 2002a. Definitive evidence for monoanionic binding of 2,3-dihydroxybiphenyl to 2,3-dihydroxybiphenyl 1,2-dioxygenase from UV resonance Raman spectroscopy, UV/Vis absorption spectroscopy, and crystallography. J Am Chem Soc 124:2485-2496.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 2485-2496
-
-
Vaillancourt, F.H.1
Barbosa, C.J.2
Spiro, T.G.3
Bolin, J.T.4
Blades, M.W.5
Turner, R.F.B.6
Eltis, L.D.7
-
178
-
-
27544457806
-
Molecular basis for the substrate selectivity of bicyclic and monocyclic extradiol dioxygenases
-
Vaillancourt, F.H., Fortin, P.D., Labbé, G., Drouin, N.M., Karim, Z., Agar, N.Y., and Eltis, L.D. 2005a. Molecular basis for the substrate selectivity of bicyclic and monocyclic extradiol dioxygenases. Biochem Biophys Res Commun 338:215-222.
-
(2005)
Biochem Biophys Res Commun
, vol.338
, pp. 215-222
-
-
Vaillancourt, F.H.1
Fortin, P.D.2
Labbé, G.3
Drouin, N.M.4
Karim, Z.5
Agar, N.Y.6
Eltis, L.D.7
-
179
-
-
0032567402
-
Molecular basis for the stabilization and inhibition of 2, 3-dihydroxybiphenyl 1,2-dioxygenase by t-butanol
-
Vaillancourt, F.H., Han, S., Fortin, P.D., Bolin, J.T., and Eltis, L.D. 1998. Molecular basis for the stabilization and inhibition of 2, 3-dihydroxybiphenyl 1,2-dioxygenase by t-butanol. J Biol Chem 273:34887-34895.
-
(1998)
J Biol Chem
, vol.273
, pp. 34887-34895
-
-
Vaillancourt, F.H.1
Han, S.2
Fortin, P.D.3
Bolin, J.T.4
Eltis, L.D.5
-
180
-
-
0037312775
-
Characterization of extradiol dioxygenases from a polychlorinated biphenyl-degrading strain that possess higher specificities for chlorinated metabolites
-
Vaillancourt, F.H., Haro, M.A., Drouin, N.M., Karim, Z., Maaroufi, H., and Eltis, L.D. 2003. Characterization of extradiol dioxygenases from a polychlorinated biphenyl-degrading strain that possess higher specificities for chlorinated metabolites. J Bacteriol 185:1253-1260.
-
(2003)
J Bacteriol
, vol.185
, pp. 1253-1260
-
-
Vaillancourt, F.H.1
Haro, M.A.2
Drouin, N.M.3
Karim, Z.4
Maaroufi, H.5
Eltis, L.D.6
-
181
-
-
0037127253
-
The mechanism-based inactivation of 2,3-dihydroxybiphenyl 1,2-dioxygenase by catecholic substrates
-
Vaillancourt, F.H., Labbé, G., Drouin, N.M., Fortin, P.D., and Eltis, L.D. 2002b. The mechanism-based inactivation of 2,3-dihydroxybiphenyl 1,2-dioxygenase by catecholic substrates. J Biol Chem 277:2019-2027.
-
(2002)
J Biol Chem
, vol.277
, pp. 2019-2027
-
-
Vaillancourt, F.H.1
Labbé, G.2
Drouin, N.M.3
Fortin, P.D.4
Eltis, L.D.5
-
182
-
-
24144485937
-
Cryptic chlorination by a non-haem iron enzyme during cyclopropyl amino acid biosynthesis
-
Vaillancourt, F.H., Yeh, E., Vosburg, D.A., O'Connor, S.E., and Walsh, C.T. 2005b. Cryptic chlorination by a non-haem iron enzyme during cyclopropyl amino acid biosynthesis. Nature 436:1191-1194.
-
(2005)
Nature
, vol.436
, pp. 1191-1194
-
-
Vaillancourt, F.H.1
Yeh, E.2
Vosburg, D.A.3
O'Connor, S.E.4
Walsh, C.T.5
-
183
-
-
0032552110
-
Structure of a cephalosporin synthase
-
Valegard, K., van Scheltinga, A.C., Lloyd, M.D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.J., Baldwin, J.E., Schofield, C.J., Hajdu, J., and Andersson, I. 1998. Structure of a cephalosporin synthase. Nature 394:805-809.
-
(1998)
Nature
, vol.394
, pp. 805-809
-
-
Valegard, K.1
Van Scheltinga, A.C.2
Lloyd, M.D.3
Hara, T.4
Ramaswamy, S.5
Perrakis, A.6
Thompson, A.7
Lee, H.J.8
Baldwin, J.E.9
Schofield, C.J.10
Hajdu, J.11
Andersson, I.12
-
184
-
-
0036038941
-
Molecular and functional characterization of kshA and kshB, encoding two components of 3-ketosteroid 9α-hydroxylase, a class IA monooxygenase, in Rhodococcus erythropolis SQ1
-
Van der Geize, R., Hessels, G.I., Van Gerwen, R., Van der Meijden, P., and Dijkhuizen, L. 2002. Molecular and functional characterization of kshA and kshB, encoding two components of 3-ketosteroid 9α-hydroxylase, a class IA monooxygenase, in Rhodococcus erythropolis SQ1. Mol Microbiol 45:1007-1018.
-
(2002)
Mol Microbiol
, vol.45
, pp. 1007-1018
-
-
Van Der Geize, R.1
Hessels, G.I.2
Van Gerwen, R.3
Van Der Meijden, P.4
Dijkhuizen, L.5
-
185
-
-
0000216349
-
Studies on purified 3-hydroxyanthranilic acid oxidase
-
Vescia, A., and Di Prisco, G. 1962. Studies on purified 3-hydroxyanthranilic acid oxidase. J Biol Chem 237:2318-2324.
-
(1962)
J Biol Chem
, vol.237
, pp. 2318-2324
-
-
Vescia, A.1
Di Prisco, G.2
-
186
-
-
0034654852
-
The 1.8 Å crystal structure of catechol 1,2-dioxygenase reveals a novel hydrophobic helical zipper as a subunit linker
-
Vetting, M.W., and Ohlendorf, D.H. 2000. The 1.8 Å crystal structure of catechol 1,2-dioxygenase reveals a novel hydrophobic helical zipper as a subunit linker. Structure 8:429-440.
-
(2000)
Structure
, vol.8
, pp. 429-440
-
-
Vetting, M.W.1
Ohlendorf, D.H.2
-
187
-
-
0034636805
-
Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 Å resolution: Implications for the mechanism of an intradiol dioxygenase
-
Vetting, M.W., D'Argenio, D.A., Ornston, L.N., and Ohlendorf, D.H. 2000. Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 Å resolution: implications for the mechanism of an intradiol dioxygenase. Biochemistry 39:7943-7955.
-
(2000)
Biochemistry
, vol.39
, pp. 7943-7955
-
-
Vetting, M.W.1
D'Argenio, D.A.2
Ornston, L.N.3
Ohlendorf, D.H.4
-
188
-
-
1642264726
-
Crystallographic comparison of manganese- And iron-dependent homoprotocatechuate 2,3-dioxygenases
-
Vetting, M.W., Wackett, L.P., Que, L. Jr., Lipscomb, J.D., and Ohlendorf, D.H. 2004. Crystallographic comparison of manganese- and iron-dependent homoprotocatechuate 2,3-dioxygenases. J Bacteriol 186:1945-1958.
-
(2004)
J Bacteriol
, vol.186
, pp. 1945-1958
-
-
Vetting, M.W.1
Wackett, L.P.2
Que Jr., L.3
Lipscomb, J.D.4
Ohlendorf, D.H.5
-
189
-
-
10344235266
-
The role of the conserved residues His-246, His-199, and Tyr-255 in the catalysis of catechol 2,3-dioxygenase from Pseudomonas stutzeri OX1
-
Viggiani, A., Siani, L., Notomista, E., Birolo, L., Pucci, P., and Di Donato, A. 2004. The role of the conserved residues His-246, His-199, and Tyr-255 in the catalysis of catechol 2,3-dioxygenase from Pseudomonas stutzeri OX1. J Biol Chem 279:48630-48639.
-
(2004)
J Biol Chem
, vol.279
, pp. 48630-48639
-
-
Viggiani, A.1
Siani, L.2
Notomista, E.3
Birolo, L.4
Pucci, P.5
Di Donato, A.6
-
190
-
-
0028213916
-
4-Chloro-3-hydroxyanthranilate inhibits quinolinate production in the rat hippocampus in vivo
-
Walsh, J.L., Wu, H.-Q., Ungerstedt, U., and Schwarcz, R. 1994. 4-Chloro-3-hydroxyanthranilate inhibits quinolinate production in the rat hippocampus in vivo. Brain Res Bull 33:513-516.
-
(1994)
Brain Res Bull
, vol.33
, pp. 513-516
-
-
Walsh, J.L.1
Wu, H.-Q.2
Ungerstedt, U.3
Schwarcz, R.4
-
191
-
-
0021100507
-
Rapid reaction studies on the oxygenation reactions of catechol dioxygenase
-
Walsh, T.A., Ballou, D.P., Mayer, R., and Que, L. Jr. 1983. Rapid reaction studies on the oxygenation reactions of catechol dioxygenase. J Biol Chem 258:14422-14427.
-
(1983)
J Biol Chem
, vol.258
, pp. 14422-14427
-
-
Walsh, T.A.1
Ballou, D.P.2
Mayer, R.3
Que Jr., L.4
-
192
-
-
0031172842
-
Cloning, overexpression, and mutagenesis of the gene for homoprotocatechuate 2,3-dioxygenase from Brevibacterium fuscum
-
Wang, Y.Z., and Lipscomb, J.D. 1997. Cloning, overexpression, and mutagenesis of the gene for homoprotocatechuate 2,3-dioxygenase from Brevibacterium fuscum. Protein Expr Purif 10:1-9.
-
(1997)
Protein Expr Purif
, vol.10
, pp. 1-9
-
-
Wang, Y.Z.1
Lipscomb, J.D.2
-
193
-
-
0037467765
-
Spectroscopic studies of the effect of ligand donor strength on the Fe-NO bond intradiol dioxygenases
-
Wasinger, E.C., Davis, M.I., Pau, M.Y.M., Orville, A.M., Zaleski, J.M., Hedman, B., Lipscomb, J.D., Hodgson, K.O., and Solomon, E.I. 2003. Spectroscopic studies of the effect of ligand donor strength on the Fe-NO bond intradiol dioxygenases. Inorg Chem 42:365-376.
-
(2003)
Inorg Chem
, vol.42
, pp. 365-376
-
-
Wasinger, E.C.1
Davis, M.I.2
Pau, M.Y.M.3
Orville, A.M.4
Zaleski, J.M.5
Hedman, B.6
Lipscomb, J.D.7
Hodgson, K.O.8
Solomon, E.I.9
-
195
-
-
0030066104
-
Manganese(II)-dependent extradiol-cleaving catechol dioxygenase from Arthrobacter globiformis CM-2
-
Whiting, A.K., Boldt, Y.R., Hendrich, M.P., Wackett, L.P., and Que, L.Jr. 1996. Manganese(II)-dependent extradiol-cleaving catechol dioxygenase from Arthrobacter globiformis CM-2. Biochemistry 35:160-170.
-
(1996)
Biochemistry
, vol.35
, pp. 160-170
-
-
Whiting, A.K.1
Boldt, Y.R.2
Hendrich, M.P.3
Wackett, L.P.4
Que, L.J.5
-
196
-
-
0034619260
-
Elucidation of the catalytic mechanisms of the non-haem iron-dependent catechol dioxygenases: Synthesis of carba-analogues for hydroperoxide reaction intermediates
-
Winfield, C.J., Al-Mahrizy, Z., Gravestock, M., and Bugg, T.D.H. 2000. Elucidation of the catalytic mechanisms of the non-haem iron-dependent catechol dioxygenases: synthesis of carba-analogues for hydroperoxide reaction intermediates. J Chem Soc Perkin Trans 1 2000:3277-3289.
-
(2000)
J Chem Soc Perkin Trans 1
, vol.2000
, pp. 3277-3289
-
-
Winfield, C.J.1
Al-Mahrizy, Z.2
Gravestock, M.3
Bugg, T.D.H.4
-
197
-
-
0025085686
-
Protocatechuate 2,3-dioxygenase from Bacillus macerans
-
Wolgel, S.A., and Lipscomb, J.D. 1990. Protocatechuate 2,3-dioxygenase from Bacillus macerans. Methods Enzymol 188:95-101.
-
(1990)
Methods Enzymol
, vol.188
, pp. 95-101
-
-
Wolgel, S.A.1
Lipscomb, J.D.2
-
198
-
-
0033766314
-
Germin is a manganese containing homohexamer with oxalate oxidase and superoxide dismutase activities
-
Woo, E.J., Dunwell, J.M., Goodenough, P.W., Marvier, A.C., and Pickersgill, R.W. 2000. Germin is a manganese containing homohexamer with oxalate oxidase and superoxide dismutase activities. Nat Struct Biol 7:1036-1040.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 1036-1040
-
-
Woo, E.J.1
Dunwell, J.M.2
Goodenough, P.W.3
Marvier, A.C.4
Pickersgill, R.W.5
-
199
-
-
0033564297
-
Evidence that pcpA encodes 2,6-dichlorohydroquinone dioxygenase, the ring cleavage enzyme required for pentachlorophenol degradation in Sphingomonas chlorophenolica strain ATCC 39723
-
Xu, L., Resing, K., Lawson, S.L., Babbitt, P.C., and Copley, S.D. 1999. Evidence that pcpA encodes 2,6-dichlorohydroquinone dioxygenase, the ring cleavage enzyme required for pentachlorophenol degradation in Sphingomonas chlorophenolica strain ATCC 39723. Biochemistry 38:7659-7669.
-
(1999)
Biochemistry
, vol.38
, pp. 7659-7669
-
-
Xu, L.1
Resing, K.2
Lawson, S.L.3
Babbitt, P.C.4
Copley, S.D.5
-
200
-
-
0017848886
-
Rat liver cysteine dioxygenase (cysteine oxidase). Further purification, characterization, and analysis of the activation and inactivation
-
Yamaguchi, K., Hosokawa, Y., Kohashi, N., Kori, Y., Sakakibara, S., and Ueda, I. 1978. Rat liver cysteine dioxygenase (cysteine oxidase). Further purification, characterization, and analysis of the activation and inactivation. J Biochem 83:479-491.
-
(1978)
J Biochem
, vol.83
, pp. 479-491
-
-
Yamaguchi, K.1
Hosokawa, Y.2
Kohashi, N.3
Kori, Y.4
Sakakibara, S.5
Ueda, I.6
-
201
-
-
0035816580
-
A novel pathway of aerobic benzoate catabolism in the bacteria Azoarcus evansii and Bacillus stearothermophilus
-
Zaar, A., Eisenreich, W., Bacher, A., and Fuchs, G. 2001. A novel pathway of aerobic benzoate catabolism in the bacteria Azoarcus evansii and Bacillus stearothermophilus. J Biol Chem 276:24997-25004.
-
(2001)
J Biol Chem
, vol.276
, pp. 24997-25004
-
-
Zaar, A.1
Eisenreich, W.2
Bacher, A.3
Fuchs, G.4
-
202
-
-
0028869982
-
Purification and characterization of 6-chlorohydroxyquinol 1,2-dioxygenase from Streptomyces rochei 303: Comparison with an analogous enzyme from Azotobacter sp. strain GP1
-
Zaborina, O., Latus, M., Eberspacher, J., Golovleva, L.A., and Lingens, F. 1995. Purification and characterization of 6-chlorohydroxyquinol 1,2-dioxygenase from Streptomyces rochei 303: comparison with an analogous enzyme from Azotobacter sp. strain GP1. J Bacteriol 177:229-234.
-
(1995)
J Bacteriol
, vol.177
, pp. 229-234
-
-
Zaborina, O.1
Latus, M.2
Eberspacher, J.3
Golovleva, L.A.4
Lingens, F.5
-
203
-
-
0033981009
-
Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase
-
Zhang, Z., Ren, J., Stammers, D.K., Baldwin, J.E., Harlos, K., and Schofield, C.J. 2000. Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase. Nat Struct Biol 7:127-133.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 127-133
-
-
Zhang, Z.1
Ren, J.2
Stammers, D.K.3
Baldwin, J.E.4
Harlos, K.5
Schofield, C.J.6
-
204
-
-
0028049314
-
Pseudomonas aeruginosa possesses homologues of mammalian phenylalanine hydroxylase and 4 alpha-carbinolamine dehydratase/DCoH as part of a three-component gene cluster
-
Zhao, G., Xia, T., Song, J., and Jensen, R.A. 1994. Pseudomonas aeruginosa possesses homologues of mammalian phenylalanine hydroxylase and 4 alpha-carbinolamine dehydratase/DCoH as part of a three-component gene cluster. Proc Natl Acad Sci USA 91:1366-1370.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 1366-1370
-
-
Zhao, G.1
Xia, T.2
Song, J.3
Jensen, R.A.4
|