Characterization of a novel thermostable Mn(II)-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase from a polychlorinated biphenyl- and naphthalene-degrading Bacillus sp. JF8

Journal of Biological Chemistry

Volumn 278, Issue 24, 2003, Pages 21483-21492

  Hatta, Takashi ^a   Mukerjee Dhar, Gouri ^b   Damborsky, Jiri ^c   Kiyohara, Hohzoh ^a   Kimbara, Kazuhide ^b  

^a OKAYAMA UNIVERSITY OF SCIENCE   (Japan)

^b RAILWAY TECHNICAL RESEARCH INSTITUTE   (Japan)

^c MASARYK UNIVERSITY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; CLONING; ENZYME KINETICS; GENES; MASS SPECTROMETRY; SUBSTRATES;

MOLECULAR MASS;

PROTEINS;

1,10 PHENANTHROLINE; 2,3 DIHYDROXYBIPHENYL; 2,3 DIHYDROXYBIPHENYL 1,2 DIOXYGENASE; 3 CHLOROCATECHOL; 3 METHYLCATECHOL; 4 CHLOROCATECHOL; 4 METHYLCATECHOL; CATECHOL; EDETIC ACID; HYDROGEN PEROXIDE; MANGANESE; NAPHTHALENE DERIVATIVE; OXYGENASE; POLYCHLORINATED BIPHENYL; UNCLASSIFIED DRUG;

ARTICLE; BACILLUS; CATALYSIS; ENZYME ACTIVITY; ENZYME DENATURATION; ENZYME INHIBITION; ENZYME SUBSTRATE; HALF LIFE TIME; MASS SPECTROMETRY; MOLECULAR CLONING; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PH; PRIORITY JOURNAL; REACTION ANALYSIS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; TEMPERATURE DEPENDENCE; THERMOSTABILITY;

AMINO ACID SEQUENCE; BACILLUS; BINDING SITES; BIPHENYL COMPOUNDS; CATECHOLS; CHELATING AGENTS; CHROMATOGRAPHY; CLONING, MOLECULAR; DIOXYGENASES; DNA; EDETIC ACID; ELECTRON SPIN RESONANCE SPECTROSCOPY; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ETHANOLAMINES; HYDROGEN-ION CONCENTRATION; KINETICS; LIGANDS; MANGANESE; MODELS, CHEMICAL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NAPHTHALENES; OXYGENASES; PHYLOGENY; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROPHOTOMETRY; SUBSTRATE SPECIFICITY; TEMPERATURE; TIME FACTORS;

BACILLUS SP.; POSIBACTERIA;

EID: 0038159602     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M210240200     Document Type: Article

References (77)

1. Harayama, S., and Rekik, M. (1989) J. Biol. Chem. 264, 15328-15333
2. Han, S., Eltis, L. D., Timmis, K. T. N., Muchmore, S. W., and Bolin, J. T. (1995) Science 270, 976-980
3. Senda, T., Sugiyama, K., Narita, H., Yamamoto, H., Kimbara, K., Fukuda, M., Sato, M., Yano, K., and Mitsui, Y. (1996) J. Mol. Biol. 255, 735-752
4. Kita, K., Kita, S., Fujisawa, I., Inaka, K., Ishida, T., Horiike, K., Nozaki, M., and Miki, K. (1999) Structure 7, 25-34
5. Que, L., Jr., Widom, J., and Crawford, R. L. (1981) J. Biol. Chem. 256, 10941-10944
6. Boldt, Y. R., Sadowsky, M. J., Ellis, L. B. M., Que, L., Jr., and Wackett, L. P. (1995) J. Bacteriol. 177, 1225-1232
7. Gibello, A., Ferrer, E., Martin, M., and Garrido-Pertierra, A. (1994) Biochem. J. 301, 145-150
8. Taira, K., Hirose, J., Hayashida, S., and Furukawa, K. (1992) J. Biol. Chem. 267, 4844-4853
9. Masai, E., Yamada, A., Healy, J. M., Hatta, T., Fukuda, M., and Yano, K. (1995) Appl. Environ. Microbiol. 61, 2079-2085
10. Hofer, B., Eltis, L. D., Dowling, D. N., and Timmis, K. N. (1993) Gene (Amst.) 130, 47-55
11. Bedard, D. L., and Haberl, M. H. (1990) Microb. Ecol. 20, 87-102
12. Gibson, D. T., Cruden, D. L., Haddock, J. D., Zylstra, G. J., and Brand, J. M. (1993) J. Bacteriol. 175, 4561-4564
13. Erickson, B. D., and Mondello, F. J. (1993) Appl. Environ. Microbiol. 59, 3858-3862
14. Furukawa, K., Tomizuka, N., and Kamibayashi, A. (1979) Appl. Environ. Microbiol. 38, 301-310
15. Seeger, M., Timmis, K. N., and Hofer, B. (1995) Appl. Environ. Microbiol. 61, 2654-2655
16. Sondossi, M., Sylvestre, M., and Ahmad, D. (1992) Appl. Environ. Microbiol. 58, 485-495
17. Arensdorf, J. J., and Focht, D. D. (1994) Appl. Environ. Microbiol. 60, 2884-2889
18. Astuiras, J. A., and Timmis, K. N. (1993) J. Bacteriol. 175, 4631-4640
19. Chen, C., and Taylor, R. (1995) Biotechnol. Bioeng. 48, 614-624
20. Gurugeyalakshmi, G., and Oriel, P. (1989) Appl. Environ. Microbiol. 55, 500-502
21. Mutzel, A., Reinscheid, U. M., Antranikian, G., and Muller, R. (1996) Appl. Microbiol. Biotechnol. 46, 593-596
22. Dong, F.-M., Wang, L.-L., Wang, C.-M., Cheng, J.-P., He, Z.-Q., Sheng, Z.-J., and Shen, R.-Q. (1992) Appl. Environ. Microbiol. 58, 2531-2535
23. Natarajan, M. R., Lu, Z., and Oriel, P. (1994) Biodegradation 5, 77-82
24. Shimura, M., Mukerjee-Dhar, G., Kimbara, K., Nagato, H., Kiyohara, H., and Hatta, T. (1999) FEMS Microbiol. Lett. 178, 87-93
25. Johnson, J. L. (1994) in Similarity Analysis of DNAs (Gerhardt, P., Murray, R. G. E., Wood, W. A., and Kreig, N. R., eds) Methods for General and Molecular Bacteriology, American Society for Microbiology, Washington, D. C.
26. Birnboim, H., and Doly, J. (1979) Nucleic Acids Res. 7, 1513-1523
27. Sambrook, J., Fritsch, E., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
28. Mukerjee-Dhar, G., Hatta, T., Shimura, M., and Kimbara, K. (1998) Arch. Microbiol. 169, 61-70
29. Sanger, F., Nicklen, S., and Coulson, V. (1977) Proc. Natl. Acad. Sci. U. S. A. 74, 5463-5467
30. Bradford, M. M. (1976) Ann. Biochem. 72, 248-254
31. Laemmli, U. K. (1970) Nature 227, 680-685
32. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
33. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Nucleic Acids Res. 11, 4673-4680
34. Jones, D. T. (1999) J. Mol. Biol. 292, 195-202
35. Cuff, J. A., Clamp, M. E., Siddigni, A. S., Finlay, M., and Barton, G. J. (1998) Bioinformatics 14, 892-893
36. Rost, B. (1996) Methods Enzymol. 266, 525-539
37. Baldi, P., Brunak, S., Frasconi, P., Pollastri, G., and Soda, G. (1999) Bioinformatics 15, 937-946
38. Guex, N., and Peitsch, M. C. (1997) Electrophoresis 18, 2714-2723
39. Ogata, K., and Umeyama, H. (1997) Protein Eng. 10, 353-359
40. Sali, A., and Blundell, T. L. (1993) J. Mol. Biol. 234, 779-815
41. Laskowski, R. A., McArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystals 26, 283-291
42. Whiting, A. K., Boldt, Y. R., Hendrich, M. P., Wackett, L. P., and Que, L., Jr. (1996) Biochemistry 35, 160-170
43. Requena L., and Bornemann, S. (1999) Biochem. J. 343, 185-190
44. Tanner, A., Bowater, L., Fairhurst, S. A., and Bornemann, S. (2001) J. Biol. Chem. 47, 43627-43634
45. Furukawa, K., and Arimura, N. (1987) J. Bacteriol. 169, 924-927
46. Eltis, L., D., Hofmann, B., Hecht, H.-J., and Timmis, K., N. (1993) J. Biol. Chem. 266, 2727-2732
47. Heiss, G., Stolz, A., Kuhm, A. E., Muller, C., Klein, J., Altenbuchener, J., and Knackmuss, H.-J. (1995) J. Bacteriol. 177, 5865-5871
48. Candidus, S., van Pee, K.-H., and Lingens, F. (1994) Microbiology 140, 321-330
49. He, Z. Q., Mao, Y. M., Sheng, Z. J., and Shen, R. Q. (1995) Chin. Biochem. J. 11, 114-116
50. Eltis, L. D., and Bolin, J. T. (1996) J. Bacteriol. 178, 5930-5937
51. Vieille, C., Burdette, D. S., and Zeikus, J. G. (1996) Biotechnol. Annu. Rev. 2, 1-83
52. Khan, A. A., Wang, R. F., Nawaz, M. S., Cao, W. W., and Cerniglia, C. E. (1996) Appl. Environ. Microbiol. 62, 1825-1830
53. Asturias, J. A., Eltis, L. D., Prucha, M., and Timmis, K. N. (1994) J. Biol. Chem. 269, 7807-7815
54. Choo, D.-W., Kurihara, T., Suzuki, T., Soda, K., and Esaki, N. (1998) Appl. Environ. Microbiol. 64, 486-491
55. Stellwagen, E., Cronlund, M. M., and Barnes, L. D. (1973) Biochemistry 12, 1552-1559
56. Borgstahl, G. E. O., Parge, H. E., Hickey, M. J., Beyer, Jr., W. F., Hallewell, R. A., and Tainer, J. A. (1992) Cell 71, 107-118
57. Hsieh, Y., Guan, Y., Tu, C., Bratt, P. J., Angerhofer, A., Lepock, J. R., Hickey, M. J., Tainer, J. A., Nick, H. S., and Silverman, D. N. (1998) Biochemistry 37, 4731-4739
58. Whittaker, J. W., and Whittaker, M. M. (1991) J. Am. Chem. Soc. 113, 5528-5540
59. Reed, G. H., and Ray, W. J., Jr. (1971) Biochemistry 10, 3190-3197
60. Vaillancourt, F. H., Han, S., Fortin, P. D., Bolin, J. T., and Eltis, L. D. (1998) J. Biol. Chem. 273, 34887-34895
61. Cerdan, P., Wasserfallen, A., Rekik, M., Timmis, K. N., and Harayama, S. (1994) J. Bacteriol. 176, 6074-6081
62. Vaillancourt, F. H., Labbe, G., Drouin, N. M., Fortin, P. D., and Eltis, L. D. (2002) J. Biol. Chem. 277, 2019-2027
63. Elcock, A. H. (1998) J. Mol. Biol. 284, 489-502
64. Kumar, S., Tsai, C-J., and Nussinov, R. (2000) Protein Eng. 13, 179-191
65. Yip, K. S., Stinman, T. J., Britton, K. L., Artymiuk, P. J., Baker, P. J., Sedelnikova, S. E., Engle, P. C., Pasquo, A., Chiaraluce, R., and Consalvi, V. (1995) Structure, 3, 1147-1158
66. Vetriani, C., Maeder, D. L., Tolliday, N., Yip, K. S.-P., Stillman, T. J., Britton, K. L., Rice, D. W., Klump, H. H., and Robb, F. T. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 12300-12305
67. Arnott, M. A., Michael, R. A., Thompson, C. R., Hough, D. W., and Danson, M. J. (2000) J. Mol. Biol. 304, 657-668
68. Suzuki, Y. (1989) Proc. Jpn. Acad. Ser. B Phys. Biol. Sci. 65, 146-148
69. Suzuki, Y., Oishi, K., Nakano, H., and Nagayama, T. (1987) Appl. Microbiol. Biotechnol. 26, 546-551
70. Milo, R. E., Duffner, F. M., and Muller, R. (1999) Extremophiles 3, 185-190
71. Boldt, Y. R., Whiting, A. K., Wagner, M. L., Sadowsky, M. J., Que, L., Jr., and Wackett, L. P. (1997) Biochemistry 36, 2147-2153
72. Lah, M S., Dixon, M. M., Pattridge, K. A., Stallings, W. C., Fee, J. A., and Ludwig, M. L. (1995) Biochemistry 34, 1646-1660
73. Bolin, J. T., and Eltis, L. D. (2001) in Handbook of Metalloproteins (Messerschmidt, A., Huber, R., Poulos, T., and Wieghardt, K., eds) pp. 632-642, John Wiley & Sons, Inc., New York
74. Maliekal, J., Karapetian, A., Vance, C., Yikilmaz, E., Wu, Q., Jackson, T., Brunold, T. C., Spiro, T. G., and Miller, A.-F. (2002) J. Am. Chem. Soc. 124, 15064-15075
75. Xie, J., Yikilmaz, E., Miller, A.-F., and Brunold, T. C. (2002) J. Am. Chem. Soc. 124, 3769-3774
76. Bergdoll, M., Eltis, L. D., Cameron, A. D., Dumas, P., and Bolin, J. T. (1998) Protein Sci. 7, 1661-1670
77. Santos, R., Bocquet, S., Puppo, A., and Touati, D. (1999) J. Bacteriol. 181, 4509-4516