Genetic investigation of the catabolic pathway for degradation of abietane diterpenoids by Pseudomonas abietaniphila BKME-9

Journal of Bacteriology

Volumn 182, Issue 13, 2000, Pages 3784-3793

  Martin, Vincent J J ^a,b   Mohn, William W ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b University of California   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABIETIC ACID; DITERPENOID;

ARTICLE; BACTERIAL GENETICS; BACTERIAL GROWTH; DEGRADATION; GENE CLUSTER; GENE LOCATION; GENE SEQUENCE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS ABIENTANIPHILA; SEQUENCE ANALYSIS;

BACTERIAL PROTEINS; BASE SEQUENCE; DIOXYGENASES; DITERPENES; DITERPENES, ABIETANE; DNA, BACTERIAL; FERREDOXINS; GENE EXPRESSION REGULATION, BACTERIAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; MUTAGENESIS; OPEN READING FRAMES; OXYGENASES; PHENANTHRENES; PSEUDOMONAS;

EID: 0034125740     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.182.13.3784-3793.2000     Document Type: Article

References (47)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Armengaud, J., B. Happe, and K. N. Timmis. 1998. Genetic analysis of dioxin dioxygenase of Sphingomonas sp. strain RW1: catabolic genes dispersed on the genome. J. Bacteriol. 180:3954-3966.
3. Barnes, M. R., W. A. Duetz, and P. A. Williams. 1997. A 3-(3-hydroxyphenyl)propionic acid catabolic pathway in Rhodococcus globerulus PWD1: cloning and characterization of the hpp operon. J. Bacteriol. 179:6145-6153.
4. Bicho, P. A., V. Martin, and J. N. Saddler. 1995. Growth, induction, and substrate specificity of dehydroabietic acid-degrading bacteria isolated from a kraft mill effluent enrichment. Appl. Environ. Microbiol. 61:3245-3250.
5. Biellmann, J. F., G. Branlant, M. Gero-Robert, and M. Poiret. 1973. Dégradation bactérienne de l'acide déhydroabiétique par un Flavobacterium resinovorum. Tetrahedron 29:1227-1236.
6. Biellmann, J. F., G. Branlant, M. Gero-Robert, and M. Poiret. 1973. Dégradation bactérienne de l'acide déhydroabiétique par un Pseudomonas et une Alcaligenes. Tetrahedron 29:1237-1241.
7. Blakley, E. R. 1974. The microbial degradation of cyclohexanecarboxylic acid: a pathway involving aromatization to form p-hydroxybenzoic acid. Can. J. Microbiol. 20:1297-1306.
8. de Lorenzo, V., and J. Pérez-Martin. 1996. Regulatory noise in prokaryotic promoters: how bacteria learn to respond to novel environmental signals. Mol. Microbiol. 19:1177-1184.
9. DiMarco, A. A., B. Averhoff, and L. N. Ornston. 1993. Identification of the transcriptional activator pobR and characterization of its role in the expression of pobA, the structural gene for p-hydroxybenzoate hydroxylase in Acinetobacter calcoaceticus. J. Bacteriol. 175:4499-4506.
10. Dodd, I. B., and J. B. Egan. 1990. Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res. 18:5019-5026.
11. Eltis, D. E., and J. T. Bolin. 1996. Evolutionary relationships among extradiol dioxygenases. J. Bacteriol. 178:5930-5937.
12. Geissdörfer, W., S. C. Frosch, G. Haspel, S. Ehrt, and W. Hillen. 1995. Two genes encoding proteins with similarities to rubredoxin and rubredoxin reductase are required for the conversion of dodecane to lauric acid in Acinetobacter calcoaceticus ADP1. Microbiology 141:1425-1432.
13. Gralton, E. M., A. L. Campbell, and E. L. Neidle. 1997. The direct introduction of DNA cleavage sites to produce a high-resolution genetic and physical map of the Acinetobacter sp. ADP1 (BD413UE) chromosome. Microbiology 143:1345-1357.
14. Harayama, S., and M. Rekik. 1989. Bacterial aromatic ring-cleavage enzymes are classified in two different gene families. J. Biol. Chem. 264:15328-15333.
15. Joernvall, H., B. Persson, M. Krook, S. Atrian, R. Gonzalez-Duarte, J. Jeffery, and D. Ghosh. 1995. Short-chain dehydrogenases/reductases (SDR). Biochemistry 34:6003-6013.
16. Kaneda, T. 1974. Enzymatic aromatization of 4-ketocyclohexanecarboxylic acid. Biochem. Biophys. Res. Commun. 58:140-144.
17. Laurie, A., and G. Lloyd-Jones. 1999. The phn genes of Burkholderia sp. strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism. J. Bacteriol. 181:531-540.
18. Leach, J. M., and A. N. Thakore. 1973. Identification of toxic constituents of kraft mill effluents that are toxic to juvenile coho salmon (Oncorhynchus kisutch). J. Fish. Res. Board Can. 30:479-484.
19. Liss, S. N., P. A. Bicho, and J. N. Saddler. 1997. Microbiology and biodegradation of resin acids in pulp mill effluents: a minireview. Can. J. Microbiol. 75:599-611.
20. Martin, V. J. J., and W. W. Mohn. 1999. An alternative inverse PCR (IPCR) method to amplify DNA sequences flanking Tn5 transposon insertions. J. Microbiol. Methods 35:163-166.
21. Martin, V. J. J., and W. W. Mohn. 1999. A novel aromatic ring-hydroxylating dioxygenase from the diterpenoid-degrading bacterium Pseudomonas abietaniphila BKME-9. J. Bacteriol. 181:2675-2682.
22. Martin, V. J. J., Z. Yu, and W. W. Mohn. 1999. Recent advances in understanding resin acid biodegradation: microbial diversity and metabolism. Arch. Microbiol. 172:131-138.
23. McLeay and Associates. 1987. Aquatic toxicity of pulp and paper effluents: a review. Environment Canada report EPS 4/PF/1.
24. Mohn, W. W. 1995. Bacteria obtained from a sequencing hatch reactor that are capable of growth on dehydroabietic acid. Appl. Environ. Microbiol. 61:2145-2150.
25. Mohn, W. W., A. E. Wilson, P. Bicho, and E. R. B. Moore. 1999. Physiological and phylogenetic diversity of bacteria growing on resin acids. Syst. Appl. Microbiol. 22:68-78.
26. Pao, S. S., I. T. Paulsen, and M. H. Saier, Jr. 1998. Major facilitator superfamily. Microbiol. Mol. Biol. Rev. 62:1-34.
27. Patel, T. R., and E. A. Barnsley. 1980. Naphthalene metabolism by pseudomonads: purification and properties of 1,2-dihydroxynaphthalene oxygenase. J. Bacteriol. 143:668-673.
28. Prieto, M. A., E. Diaz, and J. L. Garcia. 1996. Molecular characterization of the 4-hydrophenylacetate catabolic pathway of Escherichia coli W: engineering a mobile aromatic degradative cluster. J. Bacteriol. 178:111-120.
29. Ratajczak, A., W. Geibdörfer, and W. Hillen. 1998 Expression of aikane hydroxylase from Acinetobacter sp. strain ADP1 is induced by a broad range of n-alkanes and requires the transcriptional activator AlkR. J. Bacteriol. 180:5822-5827.
30. Romero-Steiner, S., R. E. Parales, C. S. Harwood, and J. E. Houghton. 1994. Characterization of the pcaR regulatory gene from Pseudomonas putida, which is required for the complete degradation of p-hydroxybenzoate. J. Bacteriol. 176:5771-5779.
31. Roper, D. I., T. Fawcett, and R. A. Cooper. 1993. The Escherichia coli C homoprotocatechuate degradative operon: hpc gene order, direction of transcription and control of expression. Mol. Gen. Genet. 237:241-250.
32. Schweizer, H. P. 1991. Escherichia-Pseudomonas shuttle vectors derived from pUC18/19. Gene 97:109-112.
33. Schweizer, H. P. 1993. Small broad-host-range gentamicin resistance gene cassette for site-specific insertion and deletion mutagenesis. BioTechniques 15:831-833.
34. Schweizer, H. P., and T. T. Hoang. 1995. An improved system for gene replacement and xylE fusion analysis in Pseudomonas aeruginosa. Gene 158: 15-22.
35. Seedorf, U., P. Brysch, T. Engel, K. Schrage, and G. Assmann. 1994. Sterol carrier protein X is peroxisomal 3-oxoacyl coenzyme A thiolase with intrinsic sterol carrier and lipid transfer activity. J. Biol. Chem. 269:21277-21283.
36. Seedorf, U., S. Scheek, T. Engel, C. Steif, H.-J. Hinz, and G. Assmann. 1994. Structure-activity studies of human sterol carrier protein 2. J. Biol. Chem. 269:2613-2618.
37. Simons, R., U. Priefer, and A. Puhler. 1983. A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in gram negative bacteria. Biotechnology 1:784-790.
38. Smit, C. P., and K. F. Chater. 1988. Structure and regulation of controlling sequences of the Streptomyces coelicolor glycerol operon. J. Mol. Biol. 204: 569-580.
39. Smith, P. K., R. I. Krohn, G. T. Hermanson, A. K. Mallia, F. H. Gartner, M. D. Provenzano, E. K. Fujimoto, N. M. Goeke, B. J. Olson, and D. C. Klenk. 1985. Measurement of protein using bicinchoninic acid. Anal. Biochem. 159:76-85.
40. Sloltes, E., and D. Zinkel. 1989. Chemistry of rosin, p. 261-345. In D. Zinkel and J. Russell (ed.), Naval stores: production, chemistry, utilization. Pulp Chemicals Association, New York, N.Y.
41. Sunnarborg, A., D. Klumpp, T. Chung, and D. C. LaPorte. 1990. Regulation of the glyoxylate bypass operon: cloning and characterization of iclR. J. Bacteriol. 172:2642-2649.
42. Taylor, D. G., and P. W. Trudgill. 1978. Metabolism of cyclohexane carboxylic acid by Alcaligenes strain W1. J. Bacteriol. 134:401-411.
43. Tresguerres, M. E. F., G de Torrontegui, and J. L. Cánovas. 1970. The metabolism of quinate by Acinetobacter calcoaceticus. Arch. Mikrobiol. 70: 110-118.
44. van der Meer, J. R., W. M. de Vos, S. Harayama, and A. Zehnder. 1992. Molecular mechanisms of genetic adaptation to xenobiotic compounds. Microbiol. Rev. 56:677-694.
45. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
46. Zender, J. A., T. R. Stuthridge, A. G. Langdon, A. L. Wilkins, K. L. Mackie, and P. N. McFarlane. 1994. Removal and transformation of resin acids during secondary treatment at a New Zealand bleached kraft pulp and paper mill. Water Sci. Tech. 29:105-121.
47. Zon, L. I., D. M. Dorfman, and S. H. Orkin. 1989. The polymerase chain reaction colony miniprep. BioTechniques 7:696-698.