Modulation of gene expression by hypoxia in human umbilical cord vein endothelial cells: A transcriptomic and proteomic study

Proteomics

Volumn 4, Issue 6, 2004, Pages 1737-1760

  Scheurer, Simone B ^a   Rybak, Jascha N ^a   Rösli, Christoph ^a   Neri, Dario ^a   Elia, Giuliano ^a  

^a ETH ZURICH   (Switzerland)

Author keywords

Human umbilical cord vein endothelial cells; Hypoxia; Stanniocalcin; Tetranectin

Indexed keywords

CD24 ANTIGEN; CHEMOKINE RECEPTOR CXCR4; CLAUDIN; CLAUDIN 3; MESSENGER RNA; OXYGEN; PROCOLLAGEN; PROCOLLAGEN LYSINE 2 OXOGLUTARATE 5 DIOXYGENASE; PROCOLLAGEN LYSYL HYDROXYLASE 1; PROCOLLAGEN LYSYL HYDROXYLASE 2; PROTEIN DEL1; TETRANECTIN; TRANSCRIPTOME; UNCLASSIFIED DRUG;

ALTERNATIVE RNA SPLICING; ANGIOGENESIS; ARTICLE; BLOOD FLOW; CELL PROLIFERATION; ENDOTHELIUM CELL; EXTRACELLULAR MATRIX; GENE EXPRESSION REGULATION; HUMAN; HUMAN CELL; HYPOXIA; IN VITRO STUDY; MICROENVIRONMENT; NUCLEOTIDE SEQUENCE; OXYGEN CONSUMPTION; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEOMICS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TANDEM MASS SPECTROMETRY; UMBILICAL CORD; VEIN;

ALTERNATIVE SPLICING; CELL HYPOXIA; CELL LINE; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ENDOTHELIUM, VASCULAR; EXTRACELLULAR MATRIX; GENE EXPRESSION; GENE EXPRESSION REGULATION; HUMANS; MASS SPECTROMETRY; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEINS; PROTEOME; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; TIME FACTORS; TRANSCRIPTION, GENETIC; UMBILICAL VEINS; UP-REGULATION;

EID: 2942557164     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200300689     Document Type: Article

References (107)

1. Helfman, T., Falanga, V., Am. J. Med. Sci. 1993, 306, 37-41.
2. Pe'er, J., Shweiki, D., Itin, A., Hemo, I. et al., Lab. Invest. 1995, 72, 638-645.
3. McDonald, D. M., Baluk, P., Cancer Res. 2002, 62, 5381-5385.
4. Vaupel, P., Kallinowski, F., Okunieff, P., Cancer Res. 1989, 49, 6449-6465.
5. Helmlinger, G., Yuan, F., Dellian, M., Jain, R. K., Nat. Med. 1997, 3, 177-182.
6. Semenza, G. L., Cell 2001, 107, 1-3.
7. Goonewardene, T. I., Sowter, H. M., Harris, A. L., Microsci. Res. Tech. 2002, 59, 41-48.
8. Carmeliet, P., Dor, Y., Herbert, J. M., Fukumura, D. et al., Nature 1998, 394, 485-490.
9. Hanahan, D., Christofori, G., Naik, P., Arbeit, J., Eur. J. Cancer 1996, 32A, 2386-2393.
10. Campochiaro, P. A., J. Cell. Physiol. 2000, 184, 301-310.
11. Taylor, C. T., Colgan, S. P., Pharm. Res. 1999, 16, 1498-1505.
12. Carnemolla, B., Borsi, L., Balza, E., Castellani, P. et al., Blood 2002, 99, 1659-1665.
13. Birchler, M., Neri, G., Tarli, L., Halin, C. et al., J. Immunol. Methods 1999, 231, 239-248.
14. Viti, F., Tarli, L., Giovannoni, L., Zardi, L., Neri, D., Cancer Res. 1999, 59, 347-352.
15. Tarli, L., Balza, E., Viti, F., Borsi, L. et al., Blood 1999, 94, 192-198.
16. Nilsson, F., Kosmehl, H., Zardi, L., Neri, D., Cancer Res. 2001, 61, 711-716.
17. Halin, C., Rondini, S., Nilsson, F., Berndt, A. et al., Nat. Biotechnol. 2002, 20, 264-269.
18. Carnemolla, B., Castellani, P., Ponassi, M., Borsi, L. et al., Am. J. Pathol. 1999, 154, 1345-1352.
19. Carnemolla, B., Balza, E., Siri, A., Zardi, L. et al., J. Cell. Biol. 1989, 108, 1139-1148.
20. Borsi, L., Allemanni, G., Gaggero, B., Zardi, L., Int. J. Cancer 1996, 66, 632-635.
21. Ran, S., Gao, B., Duffy, S., Watkins, L. et al., Cancer Res. 1998, 58, 4646-4653.
22. Ohizumi, I., Tsunoda, S., Taniguchi, K., Saito, H. et al., Int. J. Cancer 1998, 77, 561-566.
23. Ohizumi, I., Harada, N., Taniguchi, K., Tsutsumi, Y. et al., Biochim. Biophys. Acta 2000, 1497, 197-203.
24. Tsunoda, S., Ohizumi, I., Matsui, J., Koizumi, K. et al., Br. J. Cancer 1999, 81, 1155-1161.
25. Brekken, R. A., Huang, X., King, S. W., Thorpe, P. E., Cancer Res. 1998, 58, 1952-1959.
26. Pasqualini, R., Koivunen, E., Kain, R., Lahdenranta, J. et al., Cancer Res. 2000, 60, 722-727.
27. Burrows, F. J., Derbyshire, E. J., Tazzari, P. L., Amlot, P. et al., Clin. Cancer Res 1995, 1, 1623-1634.
28. Friedlander, M., Brooks, P. C., Shaffer, R. W., Kincaid, C. M. et al., Science 1995, 270, 1500-1502.
29. Brooks, P. C., Montgomery, A. M., Rosenfeld, M., Reisfeld, R. A. et al., Cell 1994, 79, 1157-1164.
30. Santimaria, M., Moscatelli, G., Viale, G. L., Giovanni, L., Clin. Cancer Res. 2003, 9, 571-579.
31. Narravula, S., Colgan, S. P., J. Immunol. 2001, 166, 7543-7548.
32. Lee, S. Y., Madan, A., Furuta, G. T., Colgan, S. P., Sibley, E., Mol. Genet. Metab. 2002, 75, 65-69.
33. Seta, K. A., Kim, R., Kim, H. W., Millhorn, D. E., Beitner-Johnson, D., J. Biol. Chem. 2001,276, 44405-44412.
34. Fink, T., Ebbesen, P., Zachar, V., Cell. Physiol. Biochem. 2001, 11, 105-114.
35. Hammond, E. M., Denko, N. C., Dorie, M. J., Abraham, R. T., Giaccia, A. J., Mol. Cell. Biol. 2002, 22, 1834-1843.
36. Budanov, A. V., Shoshani, T., Faerman, A., Zelin, E. et al., Oncogene 2002, 21, 6017-6031.
37. Niizeki, H., Kobayashi, M., Horiuchi, I., Akakura, N. et al., Br. J. Cancer 2002, 86, 1914-1919.
38. Ton, C., Stamatiou, D., Dzau, V. J., Liew, C. C., Biochem. Biophys. Res. Commun. 2002, 296, 1134-1142.
39. Semenza, G., Biochem. Pharmacol. 2002, 64, 993-998.
40. Han, D. K., Eng, J., Zhou, H., Aebersold, R., Nat. Biotechnol. 2001, 19, 946-951.
41. Lipshutz, R. J., Novartis Found Symp. 2000, 229, 84-90; discussion 90-83.
42. Lipshutz, R. J., Fodor, S. P., Gingeras, T. R., Lockhart, D. J., Nat. Genet. 1999, 21, 20-24.
43. Eng, J. K., McCormack, A. L., John R. Yates, I., J. Am. Soc. Mass. Spectrom. 1994, 5, 976-989.
44. Eisen, M. B., Spellman, P. T., Brown, P. O., Botstein, D., Proc. Natl. Acad. Sci. USA 1998, 95, 14863-14868.
45. Ogita, T., Hashimoto, E., Yamasaki, M., Nakaoka, T. et al., J. Hypertens. 2001, 19, 603-608.
46. Gerber, H. P., Condorelli, F., Park, J., Ferrara, N., J. Biol. Chem. 1997, 272, 23659-23667.
47. Paganelli, G., Bartolomei, M., Ferrari, M., Cremonesi, M. et al., Cancer Biother. Radiopharm. 2001, 16, 227-235.
48. Reardon, D. A., Akabani, G., Coleman, R. E., Friedman, A. H. et al., J. Clin. Oncol. 2002,20,1389-1397.
49. Hidai, C., Zupancic, T., Penta, K., Mikhail, A. et al., Genes Dev. 1998, 12, 21-33.
50. Aoka, Y., Johnson, F. L., Penta, K., Hirata Ki, K. et al., Microvasc. Res. 2002, 64, 148-161.
51. Castellani, P., Borsi, L., Carnemolla, B., Biro, A. et al., Am. J. Pathol. 2002, 161, 1695-1700.
52. Hindermann, W., Berndt, A., Borsi, L., Luo, X. et al., J. Pathol. 1999, 189, 475-480.
53. Cioffi, C. L., Liu, X. Q., Kosinski, P. A., Garay, M., Bowen, B. R., Biochem. Biophys. Res. Commun. 2003, 303, 947-953.
54. Ogawa, S., Gerlach, H., Esposito, C., Pasagian-Macaulay, A. et al., J. Clin. Invest. 1990, 85, 1090-1098.
55. Ogawa, S., Clauss, M., Kuwabara, K., Shreeniwas, R. et al., Proc. Natl. Acad. Sci. USA 1991, 88, 9897-9901.
56. Wary, K. K., Thakker, G. D., Humtsoe, J. O., Yang, J., Mol. Cancer 2003, 2, 25.
57. Mahon, P. C., Hirota, K., Semenza, G. L., Genes Dev. 2001, 15, 2675-2686.
58. Iyer, N. V., Kotch, L. E., Agani, F., Leung, S. W. et al., Genes Dev. 1998, 12, 149-162.
59. Le Jan, S., Amy, C., Cazes, A., Monnot, C. et al., Am. J. Pathol. 2003, 162, 1521-1528.
60. Yoon, J. C., Chickering, T. W., Rosen, E. D., Dussault, B. et al., Mol. Cell. Biol. 2000, 20, 5343-5349.
61. Belanger, A. J., Lu, H., Date, T., Liu, L. X. et al., J. Mol. Cell. Cardiol. 2002, 34, 765-774.
62. Schioppa, T., Uranchimeg, B., Saccani, A., Biswas, S. K. et al., J. Exp. Med. 2003, 198, 1391-1402.
63. Staller, P., Sulitkova, J., Lisztwan, J., Moch, H. et al., Nature 2003, 425, 307-311.
64. Kahn, J., Mehraban, F., Ingle, G., Xin, X. et al., Am. J. Pathol. 2000, 156, 1887-1900.
65. Fujiwara, Y., Sugita, Y., Nakamori, S., Miyamoto, A. et al., Int. J. Oncol. 2000, 16, 799-804.
66. Gerritsen, M. E., Soriano, R., Yang, S., Ingle, G. et al., Physiol. Genomics 2002, 10, 13-20.
67. Lal, A., Peters, H., St Croix, B., Haroon, Z. A. et al., J. Natl. Cancer Inst. 2001, 93, 1337-1343.
68. Ishibashi, K., Imai, M., Am. J. Physiol. Renal Physiol. 2002, 282, F367-375.
69. Wood, S. M., Wiesener, M. S., Yeates, K. M., Okada, N. et al., J. Biol. Chem. 1998, 273, 8360-8368.
70. Cormier-Regard, S., Nguyen, S. V., Claycomb, W. C., J. Biol. Chem. 1998, 273, 17787-17792.
71. Takahashi, Y., Takahashi, S., Shiga, Y., Yoshimi, T., Miura, T., J. Biol. Chem. 2000, 275, 14139-14146.
72. Feldser, D., Agani, F., lyer, N. V., Pak, B. et al., Cancer Res. 1999, 59, 3915-3918.
73. Brody, J. S., Kagan, H., Manalo, A., Am. Rev. Respir. Dis. 1979, 120, 1289-1295.
74. Saransaari, P., Oja, S. S., Neuroscience 1999, 94, 949-954.
75. Schaffer, S. W., Pastukh, V., Solodushko, V., Kramer, J., Azuma, J., Amino Acids 2002, 23, 395-400.
76. Park, H., Adams, M. A., Lachat, P., Bosman, F. et al., Biochem. Biophys. Res. Commun. 2000, 276, 321-328.
77. Lai, M., Sirimanne, E., Williams, C. E., Gluckman, P. D., Neuroscience 1996, 70, 1013-1024.
78. Morita, K., Furuse, M., Fujimoto, K., Tsukita, S., Proc. Natl. Acad. Sci. USA 1999, 96, 511-516.
79. Tsukita, S., Furuse, M., Itoh, M., Nat. Rev. Mol. Cell. Biol. 2001, 2, 285-293.
80. Rangel, L. B., Agarwal, R., D'Souza, T., Pizer, E. S. et al., Clin. Cancer Res. 2003, 9, 2567-2575.
81. Gonzalez, N. C., Wood, J. G., Adv. Exp. Med. Biol. 2001, 502, 39-60.
82. Fischer, G. F., Majdic, O., Gadd, S., Knapp, W., J. Immunol. 1990, 144, 638-641.
83. Aigner, S., Sthoeger, Z. M., Fogel, M., Weber, E. et al., Blood 1997, 89, 3385-3395.
84. Yang, J., Furie, B.C., Furie, B., Thromb. Haemost. 1999, 81, 1-7.
85. Favaloro, E. J., Immunol. Cell. Biol. 1993, 71 (Pt 6), 571-581.
86. Wewer, U. M., Albrechtsen, R., Lab. Invest. 1992, 67, 253-262.
87. Wewer, U. M., Ibaraki, K., Schjorring, P., Durkin, M. E. et al., J. Cell. Biol. 1994, 127, 1767-1775.
88. Bumke, M. A., Neri, D., Elia, G., Proteomics 2003, 3, 675-688.
89. Le, Y. J., Corry, P. M., Mol. Cell. Biochem. 1999, 202, 1-8.
90. Wang, L., Xiong, M., Che, D., Liu, S. et al., J. Tongji Med. Univ. 2000, 20, 265-267.
91. Grimm, C., Wenzel, A., Groszer, M., Mayser, H. et al., Nat. Med. 2002, 8, 718-724.
92. Joseph, I. B., Isaacs, J. T., Cancer Res. 1997, 57, 1054-1057.
93. Kivirikko, K. I., Pihlajaniemi, T., Adv. Enzymol. Relat. Areas. Mol. Biol. 1998, 72, 325-398.
94. Falanga, V., Martin, T. A., Takagi, H., Kirsner, R. S. et al., J. Cell. Physiol. 1993, 157, 408-412.
95. Kim, S. B., Kang, S. A., Park, J. S., Lee, J. S., Hong, C. D., Nephron 1996, 72, 275-280.
96. Ostadal, B., Kolar, F., Pelouch, V., Widimsky, J., Physiol. Res. 1995, 44, 45-51.
97. Durmowicz, A. G., Parks, W. C., Hyde, D. M., Mecham, R. P., Stenmark, K. R., Am. J. Pathol. 1994, 145, 1411-1420.
98. Ha, V. T., Marshall, M. K., Elsas, L. J., Pinnell, S. R., Yeowell, H. N., J. Clin. Invest. 1994, 93, 1716-1721.
99. Pasquali, M., Still, M. J., Vales, T., Rosen, R. I. et al., Proc. Assoc. Am. Physicians 1997, 109, 33-41.
100. Semenza, G. L., Jiang, B. H., Leung, S. W., Passantino, R. et al., J. Biol. Chem. 1996, 271, 32529-32537.
101. Ebert, B. L., Firth, J. D., Ratcliffe, P. J., J. Biol. Chem. 1995, 270, 29083-29089.
102. Pfister, B. E., Aydelotte, M. B., Burkhart, W., Kuettner, K. E., Schmid, T. M., Biochem. Biophys. Res. Commun. 2001, 286, 268-273.
103. Penta, K., Varner, J. A., Liaw, L., Hidai, C. et al., J. Biol. Chem. 1999, 274, 11101-11109.
104. Corthals, G. L., Wasinger, V. C., Hochstrasser, D. F., Sanchez, J. C., Electrophoresis 2000, 21, 1104-1115.
105. Anderson, L., Seilhamer, J., Electrophoresis 1997, 18, 533-537.
106. Semenza, G. L., Nejfelt, M. K., Chi, S. M., Antonarakis, S. E., Proc. Natl. Acad. Sci. USA 1991, 88, 5680-5684.
107. Firth, J. D., Ebert, B. L., Pugh, C. W., Ratcliffe, P. J., Proc. Natl. Acad. Sci. USA 1994, 91, 6496-6500.