Crystal Structure of an Invertebrate Caspase

Journal of Biological Chemistry

Volumn 279, Issue 8, 2004, Pages 7001-7008

  Forsyth, Charles M ^a   Lemongello, Donna ^a   LaCount, Douglas J ^b   Friesen, Paul D ^b   Fisher, Andrew J ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL STRUCTURE; ENZYMES; OPTICAL RESOLVING POWER;

HOMOLOGY;

BIOCHEMISTRY;

CASPASE; N ACETYLASPARTYLGLUTAMYLVALYLASPARTYL CHLOROMETHYL KETONE; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; COVALENT BOND; CRYSTAL STRUCTURE; EFFECTOR CELL; ENZYME ACTIVATION; ENZYME ACTIVE SITE; ENZYME STRUCTURE; INVERTEBRATE; LEPIDOPTERA; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; SEQUENCE HOMOLOGY;

AMINO ACID CHLOROMETHYL KETONES; ANIMALS; BINDING SITES; CASPASES; CRYSTALLOGRAPHY, X-RAY; CYSTEINE; DIMERIZATION; ENZYME INHIBITORS; HUMANS; INVERTEBRATES; MODELS, MOLECULAR; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; SPODOPTERA;

HEXAPODA; INSECTA; INVERTEBRATA; LEPIDOPTERA; METAZOA; SPODOPTERA FRUGIPERDA;

EID: 1342304090     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M312472200     Document Type: Article

References (61)

1. Alnemri, E. S., Livingston, D. J., Nicholson, D. W., Salvesen, G., Thornberry, N. A., Wong, W. W., and Yuan, J. (1999) Cell. 87, 171
2. Nicholson, D. W., and Thornberry, N. A. (1997) Trends Biochem. Sci. 22, 299-309
3. Grütter, M. G. (2000) Curr. Opin. Struc. Biol. 10, 649-655
4. Cohen, G. M. (1997) Biochem. J. 326, 1-16
5. Thornberry, N. A., and Lazebnik, Y. (1998) Science 281, 1312-1316
6. Earnshaw, W. C., Martins, L. M., and Kaufmann, S. H. (1999) Annu. Rev. Biochem. 68, 383-424
7. Boatright, K. M., Renatus, M., Scott, F. L., Sperandio, S., Shin, H., Pedersen, I. M., Ricci, J. E., Edris, W. A., Sutherlin, D. P., Green, D. R., and Salvesen, G. S. (2003) Mol. Cell. 11, 529-541
8. Hengartner, M. O. (2000) Nature 407, 770-776
9. Ramage, P., Cheneval, D., Chvei, M., Graff, P., Hemmig, R., Heng, R., Kocher, H. P., Mackenzie, A., Memmert, K., Revesz, L., and Wishart, W. (1995) J. Biol. Chem. 270, 9378-9383
10. Li, H., Bergeron, L., Cryns, V., Pasternack, M. S., Zhu, H., Shi, L., Greenberg, A., and Yuan, J. (1997) J. Biol. Chem. 272, 21010-21017
11. Martin, S. J., Amarante-Mendes, G. P., Shi, L., Chuang, T. H., Casiano, C. A., O'Brien, G. A., Fitzgerald, P., Tan, E. M., Bokoch, G. M., Greenberg, A. H., and Green, D. R. (1996) EMBO J. 15, 2407-2416
12. Han, Z., Hendrickson, E. A., Bremner, T. A., and Wyche, J. H. (1997) J. Biol. Chem. 272, 13432-13436
13. LaCount, D. J., Hanson, S. F., Schneider, C. L., and Friesen, P. D. (2000) J. Biol. Chem. 275, 15657-15664
14. Wilson, K. P., Black, J.-A. F., Thomson, J. A., Kim, E. E., Griffith, J. P., Navia, M. A., Murcko, M. A., Chambers, S. P., Aldape, R. A., Raybuck, S. A., and Livingston, D. J. (1994) Nature 370, 270-275
15. Walker, N. P. C., Talanian, R. V., Brady, K. D., Dang, L. C., Bump, N. J., Ferenz, C. R., Franklin, S., Ghayur, T., Hackett, M. C., Hammill, L. D., Herzong, L., Hugunin, M., Houy, W., Mankovich, J. A., McGuiness, L., Orlewicz, E., Paskind, M., Pratt, C. A., Reis, P., Summani, A., Terranova, M., Welch, J. P., Xiong, L., Möller, A., Tracey, D. E., Kamen, R., and Wong, W. W. (1994) Cell 78, 343-352
16. Rotonda, J., Nicholson, D. W., Fazil, K. M., Gallant, M., Gareau, Y., Labelle, M., Peterson, E. P., Rasper, D. M., Ruel, R., Vaillancourt, J. P., Thornberry, N. A., and Becker, J. W. (1996) Nat. Strue. Biol. 3, 619-625
17. Mittl, P., Di Marco, S., Krebs, J., Bai, X., Karanewsky, D., Priestle, J., Tomaselli, K., and Grütter, M. (1997) J. Biol. Chem. 272, 6539-6547
18. Wei, Y., Fox, T., Chambers, S. P., Sintchak, J., Coll, J. T., Golec, J. M., Swenson, L., Wilson, K. P., and Charifson, P. S. (2000) Chem. Biol. 7, 423-432
19. Blanchard, H., Kodandapani, L., Mittl, P. R., Marco, S. D., Krebs, J. F., Wu, J. C., Tomaselli, K. J., and Grütter, M. G. (1999) Struct. re Fold Des. 7, 1125-1133
20. Watt, W., Koeplinger, K. A., Mildner, A. M., Heinrikson, R. L., Tomasselli, A. G., and Watenpaugh, K. D. (1999) Struct. Fold Des. 7, 1135-1143
21. Renatus, M., Stennicke, H. R., Scott, F. L., Liddington, R. C., and Salvesen, G. S. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 14250-14255
22. Shiozaki, E. N., Chai, J., Rigotti, D. J., Riedl, S. J., Li, P., Srinivasula, S. M., Alnemri, E. S., Fairman, R., and Shi, Y. (2003) Mol. Cell. 11, 519-527
23. Yuan, J., Shaham, S., Ledoux, S., Ellis, H. M., and Horvitz, H. R. (1993) Cell 75, 641-652
24. Song, Z., McCall, K., and Steller, H. (1997) Science 275, 536-540
25. Inohara, N., Koseki, T., Hu, Y., Chen, S., and Nunez, G. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 10717-10722
26. Ahmad, M., Srinivasula, S. M., Wang, L., Litwack, G., Fernandes-Alnemri, T., and Alnemri, E. S. (1997) J. Biol. Chem. 272, 1421-1424
27. Bayascas, J. R., Yuste, V. J., Benito, E., Garcia-Fernandez, J., and Comella, J. X. (2002) Cell Death Differ. 9, 1078-1089
28. Fraser, A. G., and Evan, G. I. (1997) EMBO J. 16, 2805-2813
29. Dorstyn, L., Colussi, P. A., Quinn, L. M., Richardson, H., and Kumar, S. (1999). Proc. Natl. Acad. Sci. U. S. A. 96, 4307-4312
30. Dorstyn, L., Read, S. H., Quinn, L. M., Richardson, H., and Kumar, S. (1999) J. Biol. Chem. 274, 30778-30783
31. Harvey, N. L., Daish, T., Mills, K., Dorstyn, L., Quinn, L. M., Read, S. H., Richardson, H., and Kumar, S. (2001) J. Biol. Chem. 276, 25342-25350
32. Bump, N. J., Hackett, M., Hugunin, M., Seshagiri, S., Brady, K., Chen, P., Ferenz, C., Ferenz, S., Franklin, S., Ghayur, T., Li, P., Licari, P., Mankovich, J., Shi, L., Greenberg, A. H., Miller, L. K., and Wong, W. W. (1995) Science 269, 1885-1888
33. Xu, G., Cirilli, M., Huang, Y., Rich, R. L., Myszka, D. G., and Wu, H. (2001) Nature 410, 494-497
34. Fisher, A. J., delaCruz, W., Zoog, S. J., Schneider, C. L., and Friesen, P. D. (1999) EMBO J. 18, 2031-2039
35. dela Cruz, W. P., Friesen, P. D., and Fisher, A. J. (2001) J. Biol. Chem. 276, 32933-32939
36. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
37. Rossmann, M. G. (ed) (1972) The Molecular Replacement Method: A Collection of Papers on the Use of Non-Crystallographic Symmetry, Gordon and Breach, New York
38. Navaza, J. (1993) Acta Crystallogr. Sect. D Biol. Crystallogr. 49, 588-591
39. Collaborative Computational Project Number 4 (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763
40. Matthews, B. W. (1968) J. Mol. Biol. 33, 491-497
41. Cowtan, K. (1994) Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography 31, 34-38
42. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
43. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
44. Brünger, A. T. (1992) Nature 355, 472-474
45. Laskowski, R. A., MacArthur, M. W., Mosa, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
46. Chai, J., Wu, Q., Shiozaki, E., Srinivasula, S. M., Alnemri, E. S., and Shi, Y. (2001) Cell 107, 399-407
47. Lee, D., Long, S. A., Adams, J. L., Chan, G., Vaidya, K. S., Francis, T. A., Kikly, K., Winkler, J. D., Sung, C. M., Debouck, C., Richardson, S., Levy, M. A., DeWolf, W. E., Jr., Keller, P. M., Tomaszek, T., Head, M. S., Ryan, M. D., Haltiwanger, R. C., Liang, P. H., Janson, C. A., McDevitt, P. J., Johanson, K., Concha, N. O., Chan, W., Abdel-Meguid, S. S., Badger, A. M., Lark, M. W., Nadeau, D. P., Suva, L. J., Gowen, M., and Nuttall, M. E. (2000) J. Biol. Chem. 275, 16007-16014
48. Riedl, S. J., Fuentes-Prior, P., Renatus, M., Kairies, N., Krapp, S., Huber, R., Salvesen, G. S., and Bode, W. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 14790-14795
49. Rano, T. A., Timkey, T., Peterson, E. P., Rotonda, J., Nicholson, D. W., Becker, J. W., Chapman, K. T., and Thornberry, N. A. (1997) Chem. Biol. 4,149-155
50. Blanchard, H., Donepudi, M., Tschopp, M., Kodandapani, L., Wu, J. C., and Grutter, M. G. (2000) J. Mol. Biol. 302, 9-16
51. Chereau, D., Kodandapani, L., Tomaselli, K. J., Spada, A. P., and Wu, J. C. (2003) Biochemistry 42, 4151-4160
52. Thornberry, N. A., Rano, T. A., Peterson, E. P., Rasper, D. M., Timkey, T., Garcia-Calvo, M., Houtzager, V. M., Nordstrom, P. A., Roy, S., Vaillancourt, J. P., Chapman, K. T., and Nicholson, D. W. (1997) J. Biol. Chem. 272, 17907-17911
53. Zoog, S. J., Schiller, J. J., Wetter, J. A., Chejanovsky, N., and Friesen, P. D. (2002) EMBO J. 21, 5130-5140
54. Shi, Y. (2002) Mol. Cell. 9, 459-470
55. Cowling, V., and Downward, J. (2002) Cell Death Differ. 9, 1046-1056
56. Yaoita, Y. (2002) Biochem. Biophys. Res. Commun. 291, 79-84
57. Denault, J.-B., and Salvesen, G. S. (2003) J. Biol. Chem. 278, 34042-34050
58. Meergans, T., Hildebrandt, A. K., Horak, D., Haenisch, C., and Wendel, A. (2000) Biochem. J. 349, 135-140
59. Esnouf, R. M. (1997) J. Mol. Graph Model 15, 132-134
60. Merritt, E. A., and Murphy, M. E. P. (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 869-873
61. Wallace, A. C., Laskowski, R. A., and Thornton, J. M. (1995) Protein Eng. 8, 127-134