-
1
-
-
84861541343
-
Mutational processes molding the genomes of 21 breast cancers
-
Nik-Zainal S, Alexandrov LB, Wedge DC et al. Mutational processes molding the genomes of 21 breast cancers. Cell 2012; 149(5): 979-993.
-
(2012)
Cell
, vol.149
, Issue.5
, pp. 979-993
-
-
Nik-Zainal, S.1
Alexandrov, L.B.2
Wedge, D.C.3
-
2
-
-
84874188583
-
APOBEC3B is an enzymatic source of mutation in breast cancer
-
Burns MB, Lackey L, Carpenter MA et al. APOBEC3B is an enzymatic source of mutation in breast cancer. Nature 2013; 494: 366-370.
-
(2013)
Nature
, vol.494
, pp. 366-370
-
-
Burns, M.B.1
Lackey, L.2
Carpenter, M.A.3
-
3
-
-
84883356320
-
Evidence for APOBEC3B mutagenesis in multiple human cancers
-
Burns MB, Temiz NA, Harris RS. Evidence for APOBEC3B mutagenesis in multiple human cancers. Nat Genet 2013; 45(9): 977-983.
-
(2013)
Nat Genet
, vol.45
, Issue.9
, pp. 977-983
-
-
Burns, M.B.1
Temiz, N.A.2
Harris, R.S.3
-
4
-
-
84882837534
-
Signatures of mutational processes in human cancer
-
Alexandrov LB, Nik-Zainal S, Wedge DC et al. Signatures of mutational processes in human cancer. Nature 2013; 500(7463): 415-421.
-
(2013)
Nature
, vol.500
, Issue.7463
, pp. 415-421
-
-
Alexandrov, L.B.1
Nik-Zainal, S.2
Wedge, D.C.3
-
5
-
-
84883432724
-
An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers
-
Roberts SA, Lawrence MS, Klimczak LJ et al. An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers. Nat Genet 2013; 45(9): 970-976.
-
(2013)
Nat Genet
, vol.45
, Issue.9
, pp. 970-976
-
-
Roberts, S.A.1
Lawrence, M.S.2
Klimczak, L.J.3
-
6
-
-
85011350603
-
The DNA cytosine deaminase APOBEC3B promotes tamoxifen resistance in ER-positive breast cancer
-
Law EK, Sieuwerts AM, LaPara K et al. The DNA cytosine deaminase APOBEC3B promotes tamoxifen resistance in ER-positive breast cancer. Sci Adv 2016; 2: e1601737.
-
(2016)
Sci Adv
, vol.2
-
-
Law, E.K.1
Sieuwerts, A.M.2
LaPara, K.3
-
7
-
-
84939881660
-
Elevated APOBEC3B correlates with poor outcomes for estrogen-receptor-positive breast cancers
-
Sieuwerts AM, Willis S, Burns MB et al. Elevated APOBEC3B correlates with poor outcomes for estrogen-receptor-positive breast cancers. Horm Cancer 2014; 5(6): 405-413.
-
(2014)
Horm Cancer
, vol.5
, Issue.6
, pp. 405-413
-
-
Sieuwerts, A.M.1
Willis, S.2
Burns, M.B.3
-
8
-
-
84903390239
-
APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development
-
Henderson S, Chakravarthy A, Su X et al. APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development. Cell Rep 2014; 7: 1833-1841.
-
(2014)
Cell Rep
, vol.7
, pp. 1833-1841
-
-
Henderson, S.1
Chakravarthy, A.2
Su, X.3
-
9
-
-
85019668203
-
Tracking the evolution of non-small-cell lung cancer
-
Jamal-Hanjani M, Wilson GA, McGranahan N et al. Tracking the evolution of non-small-cell lung cancer. N Engl J Med 2017; 376(22): 2109-2121.
-
(2017)
N Engl J Med
, vol.376
, Issue.22
, pp. 2109-2121
-
-
Jamal-Hanjani, M.1
Wilson, G.A.2
McGranahan, N.3
-
10
-
-
85016138846
-
Integrated genomic and molecular characterization of cervical cancer
-
Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services et al. Integrated genomic and molecular characterization of cervical cancer. Nature 2017; 543: 378-384.
-
(2017)
Nature
, vol.543
, pp. 378-384
-
-
-
11
-
-
84907855592
-
Spatial and temporal diversity in genomic instability processes defines lung cancer evolution
-
de Bruin EC, McGranahan N, Mitter R et al. Spatial and temporal diversity in genomic instability processes defines lung cancer evolution. Science 2014; 346: 251-256.
-
(2014)
Science
, vol.346
, pp. 251-256
-
-
de Bruin, E.C.1
McGranahan, N.2
Mitter, R.3
-
12
-
-
84928254065
-
Clonal status of actionable driver events and the timing of mutational processes in cancer evolution
-
McGranahan N, Favero F, de Bruin EC et al. Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. Sci Transl Med 2015; 7: 283ra254.
-
(2015)
Sci Transl Med
, vol.7
-
-
McGranahan, N.1
Favero, F.2
de Bruin, E.C.3
-
13
-
-
85007551444
-
Mutational profile of metastatic breast cancers: a retrospective analysis
-
Lefebvre C, Bachelot T, Filleron T et al. Mutational profile of metastatic breast cancers: a retrospective analysis. PLoS Med 2016; 13: e1002201.
-
(2016)
PLoS Med
, vol.13
-
-
Lefebvre, C.1
Bachelot, T.2
Filleron, T.3
-
14
-
-
0036863733
-
RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators
-
Harris RS, Petersen-Mahrt SK, Neuberger MS. RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators. Mol Cell 2002; 10(5): 1247-1253.
-
(2002)
Mol Cell
, vol.10
, Issue.5
, pp. 1247-1253
-
-
Harris, R.S.1
Petersen-Mahrt, S.K.2
Neuberger, M.S.3
-
15
-
-
0037043699
-
Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
-
Sheehy AM, Gaddis NC, Choi JD, Malim MH. Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature 2002; 418(6898): 646-650.
-
(2002)
Nature
, vol.418
, Issue.6898
, pp. 646-650
-
-
Sheehy, A.M.1
Gaddis, N.C.2
Choi, J.D.3
Malim, M.H.4
-
16
-
-
84939942920
-
APOBECs and virus restriction
-
Harris RS, Dudley JP. APOBECs and virus restriction. Virology 2015; 479-480: 131-145.
-
(2015)
Virology
, vol.479-480
, pp. 131-145
-
-
Harris, R.S.1
Dudley, J.P.2
-
17
-
-
84929907228
-
Intrinsic host restrictions to HIV-1 and mechanisms of viral escape
-
Simon V, Bloch N, Landau NR. Intrinsic host restrictions to HIV-1 and mechanisms of viral escape. Nat Immunol 2015; 16(6): 546-553.
-
(2015)
Nat Immunol
, vol.16
, Issue.6
, pp. 546-553
-
-
Simon, V.1
Bloch, N.2
Landau, N.R.3
-
18
-
-
0034268780
-
Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme
-
Muramatsu M, Kinoshita K, Fagarasan S et al. Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell 2000; 102(5): 553-563.
-
(2000)
Cell
, vol.102
, Issue.5
, pp. 553-563
-
-
Muramatsu, M.1
Kinoshita, K.2
Fagarasan, S.3
-
19
-
-
0027434027
-
The p27 catalytic subunit of the apolipoprotein B mRNA editing enzyme is a cytidine deaminase
-
Navaratnam N, Morrison JR, Bhattacharya S et al. The p27 catalytic subunit of the apolipoprotein B mRNA editing enzyme is a cytidine deaminase. J Biol Chem 1993; 268(28): 20709-20712.
-
(1993)
J Biol Chem
, vol.268
, Issue.28
, pp. 20709-20712
-
-
Navaratnam, N.1
Morrison, J.R.2
Bhattacharya, S.3
-
20
-
-
79952126772
-
Analysis of reptilian APOBEC1 suggests that RNA editing may not be its ancestral function
-
Severi F, Chicca A, Conticello SG. Analysis of reptilian APOBEC1 suggests that RNA editing may not be its ancestral function. Mol Biol Evol 2011; 28: 1125-1129.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 1125-1129
-
-
Severi, F.1
Chicca, A.2
Conticello, S.G.3
-
21
-
-
50349093233
-
The AID/APOBEC family of nucleic acid mutators
-
Conticello SG. The AID/APOBEC family of nucleic acid mutators. Genome Biol 2008; 9(6): 229.
-
(2008)
Genome Biol
, vol.9
, Issue.6
, pp. 229
-
-
Conticello, S.G.1
-
22
-
-
58149307476
-
The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals
-
LaRue RS, Jónsson SR, Silverstein KA et al. The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals. BMC Mol Biol 2008; 9: 104.
-
(2008)
BMC Mol Biol
, vol.9
, pp. 104
-
-
LaRue, R.S.1
Jónsson, S.R.2
Silverstein, K.A.3
-
23
-
-
19344362934
-
Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G
-
Sawyer SL, Emerman M, Malik HS. Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G. PLoS Biol 2004; 2: E275.
-
(2004)
PLoS Biol
, vol.2
, pp. E275
-
-
Sawyer, S.L.1
Emerman, M.2
Malik, H.S.3
-
24
-
-
0038681023
-
Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts
-
Mangeat B, Turelli P, Caron G et al. Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. Nature 2003; 424(6944): 99-103.
-
(2003)
Nature
, vol.424
, Issue.6944
, pp. 99-103
-
-
Mangeat, B.1
Turelli, P.2
Caron, G.3
-
25
-
-
0038004471
-
The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA
-
Zhang H, Yang B, Pomerantz RJ et al. The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA. Nature 2003; 424(6944): 94-98.
-
(2003)
Nature
, vol.424
, Issue.6944
, pp. 94-98
-
-
Zhang, H.1
Yang, B.2
Pomerantz, R.J.3
-
26
-
-
0038681901
-
DNA deamination mediates innate immunity to retroviral infection
-
Harris RS, Bishop KN, Sheehy AM et al. DNA deamination mediates innate immunity to retroviral infection. Cell 2003; 113(6): 803-809.
-
(2003)
Cell
, vol.113
, Issue.6
, pp. 803-809
-
-
Harris, R.S.1
Bishop, K.N.2
Sheehy, A.M.3
-
27
-
-
84873418397
-
Uracil DNA glycosylase initiates degradation of HIV-1 cDNA containing misincorporated dUTP and prevents viral integration
-
Weil AF, Ghosh D, Zhou Y et al. Uracil DNA glycosylase initiates degradation of HIV-1 cDNA containing misincorporated dUTP and prevents viral integration. Proc Natl Acad Sci U S A 2013; 110: E448-E457.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. E448-E457
-
-
Weil, A.F.1
Ghosh, D.2
Zhou, Y.3
-
28
-
-
33847625391
-
APOBEC3F can inhibit the accumulation of HIV-1 reverse transcription products in the absence of hypermutation
-
Holmes RK, Koning FA, Bishop KN, Malim MH. APOBEC3F can inhibit the accumulation of HIV-1 reverse transcription products in the absence of hypermutation. Comparisons with APOBEC3G. J Biol Chem 2007; 282: 2587-2595.
-
(2007)
Comparisons with APOBEC3G. J Biol Chem
, vol.282
, pp. 2587-2595
-
-
Holmes, R.K.1
Koning, F.A.2
Bishop, K.N.3
Malim, M.H.4
-
29
-
-
77955004656
-
Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: implications for HIV-1 restriction
-
Refsland EW, Stenglein MD, Shindo K et al. Quantitative profiling of the full APOBEC3 mRNA repertoire in lymphocytes and tissues: implications for HIV-1 restriction. Nucleic Acids Res 2010; 38(13): 4274-4284.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.13
, pp. 4274-4284
-
-
Refsland, E.W.1
Stenglein, M.D.2
Shindo, K.3
-
30
-
-
69449103867
-
Defining APOBEC3 expression patterns in human tissues and hematopoietic cell subsets
-
Koning FA, Newman EN, Kim EY et al. Defining APOBEC3 expression patterns in human tissues and hematopoietic cell subsets. J Virol 2009; 83: 9474-9485.
-
(2009)
J Virol
, vol.83
, pp. 9474-9485
-
-
Koning, F.A.1
Newman, E.N.2
Kim, E.Y.3
-
31
-
-
85018197468
-
APOBEC enzymes: mutagenic fuel for cancer evolution and heterogeneity
-
Swanton C, McGranahan N, Starrett GJ, Harris RS. APOBEC enzymes: mutagenic fuel for cancer evolution and heterogeneity. Cancer Discov 2015; 5(7): 704-712.
-
(2015)
Cancer Discov
, vol.5
, Issue.7
, pp. 704-712
-
-
Swanton, C.1
McGranahan, N.2
Starrett, G.J.3
Harris, R.S.4
-
32
-
-
84906303775
-
Mechanisms underlying mutational signatures in human cancers
-
Helleday T, Eshtad S, Nik-Zainal S. Mechanisms underlying mutational signatures in human cancers. Nat Rev Genet 2014; 15: 585-598.
-
(2014)
Nat Rev Genet
, vol.15
, pp. 585-598
-
-
Helleday, T.1
Eshtad, S.2
Nik-Zainal, S.3
-
33
-
-
84925497848
-
Hypermutation in human cancer genomes: footprints and mechanisms
-
Roberts SA, Gordenin DA. Hypermutation in human cancer genomes: footprints and mechanisms. Nat Rev Cancer 2014; 14(12): 786-800.
-
(2014)
Nat Rev Cancer
, vol.14
, Issue.12
, pp. 786-800
-
-
Roberts, S.A.1
Gordenin, D.A.2
-
34
-
-
84944058704
-
The eQTL-missense polymorphisms of APOBEC3H are associated with lung cancer risk in a Han Chinese population
-
Zhu M, Wang Y, Wang C et al. The eQTL-missense polymorphisms of APOBEC3H are associated with lung cancer risk in a Han Chinese population. Sci Rep 2015; 5: 14969.
-
(2015)
Sci Rep
, vol.5
, pp. 14969
-
-
Zhu, M.1
Wang, Y.2
Wang, C.3
-
35
-
-
84988869897
-
The DNA cytosine deaminase APOBEC3H haplotype I likely contributes to breast and lung cancer mutagenesis
-
Starrett GJ, Luengas EM, McCann JL et al. The DNA cytosine deaminase APOBEC3H haplotype I likely contributes to breast and lung cancer mutagenesis. Nat Commun 2016; 7: 12918.
-
(2016)
Nat Commun
, vol.7
, pp. 12918
-
-
Starrett, G.J.1
Luengas, E.M.2
McCann, J.L.3
-
36
-
-
84959467752
-
DeconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution
-
Rosenthal R, McGranahan N, Herrero J et al. DeconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution. Genome Biol 2016; 17: 31.
-
(2016)
Genome Biol
, vol.17
, pp. 31
-
-
Rosenthal, R.1
McGranahan, N.2
Herrero, J.3
-
37
-
-
84991628400
-
Clonal evolution of chemotherapy-resistant urothelial carcinoma
-
Faltas BM, Prandi D, Tagawa ST et al. Clonal evolution of chemotherapy-resistant urothelial carcinoma. Nat Genet 2016; 48: 1490-1499.
-
(2016)
Nat Genet
, vol.48
, pp. 1490-1499
-
-
Faltas, B.M.1
Prandi, D.2
Tagawa, S.T.3
-
38
-
-
84905399319
-
Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection
-
Kim EY, Lorenzo-Redondo R, Little SJ et al. Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection. PLoS Pathog 2014; 10: e1004281.
-
(2014)
PLoS Pathog
, vol.10
-
-
Kim, E.Y.1
Lorenzo-Redondo, R.2
Little, S.J.3
-
39
-
-
84943184488
-
Extremely high mutation rate of HIV-1 in vivo
-
Cuevas JM, Geller R, Garijo R et al. Extremely high mutation rate of HIV-1 in vivo. PLoS Biol 2015; 13(9): e1002251.
-
(2015)
PLoS Biol
, vol.13
, Issue.9
-
-
Cuevas, J.M.1
Geller, R.2
Garijo, R.3
-
40
-
-
84973340140
-
Minimal contribution of APOBEC3-induced G-to-A hypermutation to HIV-1 recombination and genetic variation
-
Delviks-Frankenberry KA, Nikolaitchik OA, Burdick RC et al. Minimal contribution of APOBEC3-induced G-to-A hypermutation to HIV-1 recombination and genetic variation. PLoS Pathog 2016; 12(5): e1005646.
-
(2016)
PLoS Pathog
, vol.12
, Issue.5
-
-
Delviks-Frankenberry, K.A.1
Nikolaitchik, O.A.2
Burdick, R.C.3
-
41
-
-
67249140561
-
HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC
-
Wood N, Bhattacharya T, Keele BF et al. HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC. PLoS Pathog 2009; 5(5): e1000414.
-
(2009)
PLoS Pathog
, vol.5
, Issue.5
-
-
Wood, N.1
Bhattacharya, T.2
Keele, B.F.3
-
42
-
-
79956160582
-
Paradoxical relationship between chromosomal instability and survival outcome in cancer
-
Birkbak NJ, Eklund AC, Li Q et al. Paradoxical relationship between chromosomal instability and survival outcome in cancer. Cancer Res 2011; 71(10): 3447-3452.
-
(2011)
Cancer Res
, vol.71
, Issue.10
, pp. 3447-3452
-
-
Birkbak, N.J.1
Eklund, A.C.2
Li, Q.3
-
43
-
-
84954242823
-
Pan-cancer analysis of the extent and consequences of intratumor heterogeneity
-
Andor N, Graham TA, Jansen M et al. Pan-cancer analysis of the extent and consequences of intratumor heterogeneity. Nat Med 2016; 22(1): 105-113.
-
(2016)
Nat Med
, vol.22
, Issue.1
, pp. 105-113
-
-
Andor, N.1
Graham, T.A.2
Jansen, M.3
-
44
-
-
84924359778
-
Spatial and temporal heterogeneity in high-grade serous ovarian cancer: a phylogenetic analysis
-
Schwarz RF, Ng CKY, Cooke SL et al. Spatial and temporal heterogeneity in high-grade serous ovarian cancer: a phylogenetic analysis. PLoS Med 2015; 12(2): e1001789.
-
(2015)
PLoS Med
, vol.12
, Issue.2
-
-
Schwarz, R.F.1
Ng, C.K.Y.2
Cooke, S.L.3
-
45
-
-
53649092485
-
Enhancing immunity to HIV through APOBEC
-
Harris RS. Enhancing immunity to HIV through APOBEC. Nat Biotechnol 2008; 26(10): 1089-1090.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.10
, pp. 1089-1090
-
-
Harris, R.S.1
-
46
-
-
84875064882
-
Convergence and divergence in the evolution of the APOBEC3G-Vif interaction reveal ancient origins of simian immunodeficiency viruses
-
Compton AA, Emerman M. Convergence and divergence in the evolution of the APOBEC3G-Vif interaction reveal ancient origins of simian immunodeficiency viruses. PLoS Pathog 2013; 9: e1003135.
-
(2013)
PLoS Pathog
, vol.9
-
-
Compton, A.A.1
Emerman, M.2
-
47
-
-
85020233877
-
HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation
-
Nakano Y, Misawa N, Juarez-Fernandez G et al. HIV-1 competition experiments in humanized mice show that APOBEC3H imposes selective pressure and promotes virus adaptation. PLoS Pathog 2017; 13: e1006348.
-
(2017)
PLoS Pathog
, vol.13
-
-
Nakano, Y.1
Misawa, N.2
Juarez-Fernandez, G.3
-
48
-
-
0242578406
-
Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex
-
Yu X, Yu Y, Liu B et al. Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex. Science 2003; 302: 1056-1060.
-
(2003)
Science
, vol.302
, pp. 1056-1060
-
-
Yu, X.1
Yu, Y.2
Liu, B.3
-
49
-
-
77449117980
-
HIV-1 Vif binds to APOBEC3G mRNA and inhibits its translation
-
Mercenne G, Bernacchi S, Richer D et al. HIV-1 Vif binds to APOBEC3G mRNA and inhibits its translation. Nucleic Acids Res 2010; 38(2): 633-646.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.2
, pp. 633-646
-
-
Mercenne, G.1
Bernacchi, S.2
Richer, D.3
-
50
-
-
84976447075
-
Transcriptional regulation of APOBEC3 antiviral immunity through the CBF-beta/RUNX axis
-
Anderson BD, Harris RS. Transcriptional regulation of APOBEC3 antiviral immunity through the CBF-beta/RUNX axis. Sci Adv 2015; 1: e1500296.
-
(2015)
Sci Adv
, vol.1
-
-
Anderson, B.D.1
Harris, R.S.2
-
51
-
-
84942058022
-
Impact of APOBEC mutations on CD8+T cell recognition of HIV epitopes varies depending on the restricting HLA
-
Squires K, MonajemiM, Woodworth CF et al. Impact of APOBEC mutations on CD8+T cell recognition of HIV epitopes varies depending on the restricting HLA. J Acquir Immune Defic Syndr 2015; 70(2): 172-178.
-
(2015)
J Acquir Immune Defic Syndr
, vol.70
, Issue.2
, pp. 172-178
-
-
Squires, K.1
Monajemi, M.2
Woodworth, C.F.3
-
52
-
-
77953769689
-
APOBEC3G contributes to HIV-1 variation through sublethal mutagenesis
-
Sadler HA, Stenglein MD, Harris RS, Mansky LM. APOBEC3G contributes to HIV-1 variation through sublethal mutagenesis. J Virol 2010; 84: 7396-7404.
-
(2010)
J Virol
, vol.84
, pp. 7396-7404
-
-
Sadler, H.A.1
Stenglein, M.D.2
Harris, R.S.3
Mansky, L.M.4
-
53
-
-
84899570504
-
Positioning of APOBEC3G/F mutational hotspots in the human immunodeficiency virus genome favors reduced recognition by CD8+ T cells
-
Monajemi M, Woodworth CF, Zipperlen K et al. Positioning of APOBEC3G/F mutational hotspots in the human immunodeficiency virus genome favors reduced recognition by CD8+ T cells. PLoS One 2014; 9: e93428.
-
(2014)
PLoS One
, vol.9
-
-
Monajemi, M.1
Woodworth, C.F.2
Zipperlen, K.3
-
54
-
-
84856013431
-
Clonal evolution in cancer
-
Greaves M, Maley CC. Clonal evolution in cancer. Nature 2012; 481(7381): 306-313.
-
(2012)
Nature
, vol.481
, Issue.7381
, pp. 306-313
-
-
Greaves, M.1
Maley, C.C.2
-
55
-
-
66249094578
-
Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo
-
Tsibris AM, Korber B, Arnaout R et al. Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo. PLoS One 2009; 4: e5683.
-
(2009)
PLoS One
, vol.4
-
-
Tsibris, A.M.1
Korber, B.2
Arnaout, R.3
-
56
-
-
84955590314
-
Presence of minority resistant variants after failure of a tenofovir, emtricitabine, and rilpivirine regimen
-
Todesco E, Surgers L, Marcelin AG et al. Presence of minority resistant variants after failure of a tenofovir, emtricitabine, and rilpivirine regimen. J Acquir Immune Defic Syndr 2016; 72: e43-e45.
-
(2016)
J Acquir Immune Defic Syndr
, vol.72
, pp. e43-e45
-
-
Todesco, E.1
Surgers, L.2
Marcelin, A.G.3
-
57
-
-
77957243427
-
Partially active HIV-1 Vif alleles facilitate viral escape from specific antiretrovirals
-
Fourati S, Malet I, Binka M et al. Partially active HIV-1 Vif alleles facilitate viral escape from specific antiretrovirals. AIDS 2010; 24(15): 2313-2321.
-
(2010)
AIDS
, vol.24
, Issue.15
, pp. 2313-2321
-
-
Fourati, S.1
Malet, I.2
Binka, M.3
-
58
-
-
77956828453
-
Human APOBEC3Gmediated editing can promote HIV-1 sequence diversification and accelerate adaptation to selective pressure
-
Kim EY, Bhattacharya T, Kunstman K et al. Human APOBEC3Gmediated editing can promote HIV-1 sequence diversification and accelerate adaptation to selective pressure. J Virol 2010; 84: 10402-10405.
-
(2010)
J Virol
, vol.84
, pp. 10402-10405
-
-
Kim, E.Y.1
Bhattacharya, T.2
Kunstman, K.3
-
59
-
-
85015145636
-
High expression of PD-1 ligands is associated with kataegis mutational signature and APOBEC3 alterations
-
Boichard A, Tsigelny IF, Kurzrock R. High expression of PD-1 ligands is associated with kataegis mutational signature and APOBEC3 alterations. Oncoimmunology 2017; 6: e1284719.
-
(2017)
Oncoimmunology
, vol.6
-
-
Boichard, A.1
Tsigelny, I.F.2
Kurzrock, R.3
-
60
-
-
85028448586
-
Clinical trial of the Anti-PD-L1 antibody BMS-936559 in HIV-1 infected participants on suppressive antiretroviral therapy
-
Gay CL, Bosch RJ, Ritz J et al. Clinical trial of the Anti-PD-L1 antibody BMS-936559 in HIV-1 infected participants on suppressive antiretroviral therapy. J Infect Dis 2017; 215(11): 1725-1733.
-
(2017)
J Infect Dis
, vol.215
, Issue.11
, pp. 1725-1733
-
-
Gay, C.L.1
Bosch, R.J.2
Ritz, J.3
-
61
-
-
28944454412
-
Discovery and characterization of vicriviroc (SCH 417690), a CCR5 antagonist with potent activity against human immunodeficiency virus type 1
-
Strizki JM, Tremblay C, Xu S et al. Discovery and characterization of vicriviroc (SCH 417690), a CCR5 antagonist with potent activity against human immunodeficiency virus type 1. Antimicrob Agents Chemother 2005; 49: 4911-4919.
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 4911-4919
-
-
Strizki, J.M.1
Tremblay, C.2
Xu, S.3
-
62
-
-
54849145400
-
Subgroup analyses of maraviroc in previously treated R5 HIV-1 infection
-
Fätkenheuer G, Nelson M, Lazzarin A et al. Subgroup analyses of maraviroc in previously treated R5 HIV-1 infection. N Engl J Med 2008; 359: 1442-1455.
-
(2008)
N Engl J Med
, vol.359
, pp. 1442-1455
-
-
Fätkenheuer, G.1
Nelson, M.2
Lazzarin, A.3
-
63
-
-
33646443202
-
Emergence of CXCR4-using human immunodeficiency virus type 1 (HIV-1) variants in a minority of HIV-1-infected patients following treatment with the CCR5 antagonist maraviroc is from a pretreatment CXCR4-using virus reservoir
-
Westby M, Lewis M, Whitcomb J et al. Emergence of CXCR4-using human immunodeficiency virus type 1 (HIV-1) variants in a minority of HIV-1-infected patients following treatment with the CCR5 antagonist maraviroc is from a pretreatment CXCR4-using virus reservoir. J Virol 2006; 80: 4909-4920.
-
(2006)
J Virol
, vol.80
, pp. 4909-4920
-
-
Westby, M.1
Lewis, M.2
Whitcomb, J.3
-
64
-
-
84944916590
-
The influence of subclonal resistance mutations on targeted cancer therapy
-
Schmitt MW, Loeb LA, Salk JJ. The influence of subclonal resistance mutations on targeted cancer therapy. Nat Rev Clin Oncol 2016; 13: 335-347.
-
(2016)
Nat Rev Clin Oncol
, vol.13
, pp. 335-347
-
-
Schmitt, M.W.1
Loeb, L.A.2
Salk, J.J.3
-
65
-
-
85021432459
-
Elevated APOBEC3B expression drives a kataegic-like mutation signature and replication stress-related therapeutic vulnerabilities in p53-defective cells
-
Nikkilä J, Kumar R, Campbell J et al. Elevated APOBEC3B expression drives a kataegic-like mutation signature and replication stress-related therapeutic vulnerabilities in p53-defective cells. Br J Cancer 2017; 117: 113-123.
-
(2017)
Br J Cancer
, vol.117
, pp. 113-123
-
-
Nikkilä, J.1
Kumar, R.2
Campbell, J.3
-
66
-
-
84969769378
-
Mutation processes in 293-based clones overexpressing the DNA cytosine deaminase APOBEC3B
-
Akre MK, Starrett GJ, Quist JS et al. Mutation processes in 293-based clones overexpressing the DNA cytosine deaminase APOBEC3B. PLoS One 2016; 11(5): e0155391.
-
(2016)
PLoS One
, vol.11
, Issue.5
-
-
Akre, M.K.1
Starrett, G.J.2
Quist, J.S.3
-
67
-
-
84923309215
-
A prevalent cancer susceptibility APOBEC3A hybrid allele bearing APOBEC3B 3'UTR enhances chromosomal DNA damage
-
Caval V, Suspene R, Shapira M et al. A prevalent cancer susceptibility APOBEC3A hybrid allele bearing APOBEC3B 3'UTR enhances chromosomal DNA damage. Nat Commun 2014; 5: 5129.
-
(2014)
Nat Commun
, vol.5
, pp. 5129
-
-
Caval, V.1
Suspene, R.2
Shapira, M.3
-
68
-
-
79955530503
-
APOBEC3A can activate the DNA damage response and cause cell-cycle arrest
-
Landry S, Narvaiza I, Linfesty DC, Weitzman MD. APOBEC3A can activate the DNA damage response and cause cell-cycle arrest. EMBO Rep 2011; 12(5): 444-450.
-
(2011)
EMBO Rep
, vol.12
, Issue.5
, pp. 444-450
-
-
Landry, S.1
Narvaiza, I.2
Linfesty, D.C.3
Weitzman, M.D.4
-
69
-
-
84963612580
-
APOBEC3A damages the cellular genome during DNA replication
-
Green AM, Landry S, Budagyan K et al. APOBEC3A damages the cellular genome during DNA replication. Cell Cycle 2016; 15: 998-1008.
-
(2016)
Cell Cycle
, vol.15
, pp. 998-1008
-
-
Green, A.M.1
Landry, S.2
Budagyan, K.3
-
70
-
-
84973474514
-
PrimPol prevents APOBEC/AID family mediated DNA mutagenesis
-
Pilzecker B, Buoninfante OA, Pritchard C et al. PrimPol prevents APOBEC/AID family mediated DNA mutagenesis. Nucleic Acids Res 2016; 44(10): 4734-4744.
-
(2016)
Nucleic Acids Res
, vol.44
, Issue.10
, pp. 4734-4744
-
-
Pilzecker, B.1
Buoninfante, O.A.2
Pritchard, C.3
-
71
-
-
85028826324
-
APOBEC3A and 3B activities render cancer cells susceptible to ATR inhibition
-
Buisson R, Lawrence MS, Benes CH, Zou L. APOBEC3A and 3B activities render cancer cells susceptible to ATR inhibition. Cancer Res 2017; 77(17): 4567-4578.
-
(2017)
Cancer Res
, vol.77
, Issue.17
, pp. 4567-4578
-
-
Buisson, R.1
Lawrence, M.S.2
Benes, C.H.3
Zou, L.4
-
72
-
-
85028843450
-
Cytosine deaminase APOBEC3A sensitizes leukemia cells to inhibition of the DNA replication checkpoint
-
Green AM, Budagyan K, Hayer KE et al. Cytosine deaminase APOBEC3A sensitizes leukemia cells to inhibition of the DNA replication checkpoint. Cancer Res 2017; 77(17): 4579-4588.
-
(2017)
Cancer Res
, vol.77
, Issue.17
, pp. 4579-4588
-
-
Green, A.M.1
Budagyan, K.2
Hayer, K.E.3
-
73
-
-
84988848343
-
DNA replication stress mediates APOBEC3 family mutagenesis in breast cancer
-
Kanu N, Cerone MA, Goh G et al. DNA replication stress mediates APOBEC3 family mutagenesis in breast cancer. Genome Biol 2016; 17(1): 185.
-
(2016)
Genome Biol
, vol.17
, Issue.1
, pp. 185
-
-
Kanu, N.1
Cerone, M.A.2
Goh, G.3
-
74
-
-
17244367849
-
DNA damage response as a candidate anti-cancer barrier in early human tumorigenesis
-
Bartkova J, Horejsí Z, Koed K et al. DNA damage response as a candidate anti-cancer barrier in early human tumorigenesis. Nature 2005; 434(7035): 864-870.
-
(2005)
Nature
, vol.434
, Issue.7035
, pp. 864-870
-
-
Bartkova, J.1
Horejsí, Z.2
Koed, K.3
-
75
-
-
33845235459
-
Oncogene-induced senescence is part of the tumorigenesis barrier imposed by DNA damage checkpoints
-
Bartkova J, Rezaei N, Liontos M et al. Oncogene-induced senescence is part of the tumorigenesis barrier imposed by DNA damage checkpoints. Nature 2006; 444: 633-637.
-
(2006)
Nature
, vol.444
, pp. 633-637
-
-
Bartkova, J.1
Rezaei, N.2
Liontos, M.3
-
76
-
-
40449120350
-
An oncogene-induced DNA damagemodel for cancer development
-
Halazonetis TD, Gorgoulis VG, Bartek J. An oncogene-induced DNA damagemodel for cancer development. Science 2008; 319(5868): 1352-1355.
-
(2008)
Science
, vol.319
, Issue.5868
, pp. 1352-1355
-
-
Halazonetis, T.D.1
Gorgoulis, V.G.2
Bartek, J.3
-
77
-
-
84874362586
-
Replication stress links structural and numerical cancer chromosomal instability
-
Burrell RA, McClelland SE, Endesfelder D et al. Replication stress links structural and numerical cancer chromosomal instability. Nature 2013; 494: 492-496.
-
(2013)
Nature
, vol.494
, pp. 492-496
-
-
Burrell, R.A.1
McClelland, S.E.2
Endesfelder, D.3
-
78
-
-
84962301577
-
Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade
-
McGranahan N, Furness AJS, Rosenthal R et al. Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade. Science 2016; 351(6280): 1463-1469.
-
(2016)
Science
, vol.351
, Issue.6280
, pp. 1463-1469
-
-
McGranahan, N.1
Furness, A.J.S.2
Rosenthal, R.3
-
79
-
-
85014747024
-
Evolution of neoantigen landscape during immune checkpoint blockade in non-small cell lung cancer
-
Anagnostou V, Smith KN, Forde PM et al. Evolution of neoantigen landscape during immune checkpoint blockade in non-small cell lung cancer. Cancer Discov 2017; 7: 264-276.
-
(2017)
Cancer Discov
, vol.7
, pp. 264-276
-
-
Anagnostou, V.1
Smith, K.N.2
Forde, P.M.3
-
80
-
-
85010652953
-
Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy
-
Davoli T, Uno H, Wooten EC, Elledge SJ. Tumor aneuploidy correlates with markers of immune evasion and with reduced response to immunotherapy. Science 2017; 355; doi: 10.1126/science.aaf8399.
-
(2017)
Science
, vol.355
-
-
Davoli, T.1
Uno, H.2
Wooten, E.C.3
Elledge, S.J.4
-
81
-
-
85041366005
-
Association between genomic metrics and immune infiltration in triple-negative breast cancer
-
Karn T, Jiang T, Hatzis C et al. Association between genomic metrics and immune infiltration in triple-negative breast cancer. JAMA Oncol 2017; 3(12): 1707-1711.
-
(2017)
JAMA Oncol
, vol.3
, Issue.12
, pp. 1707-1711
-
-
Karn, T.1
Jiang, T.2
Hatzis, C.3
-
82
-
-
84946605544
-
The PKC/NF-kappaB signaling pathway induces APOBEC3B expression in multiple human cancers
-
Leonard B, McCann JL, Starrett GJ et al. The PKC/NF-kappaB signaling pathway induces APOBEC3B expression in multiple human cancers. Cancer Res 2015; 75(21): 4538-4547.
-
(2015)
Cancer Res
, vol.75
, Issue.21
, pp. 4538-4547
-
-
Leonard, B.1
McCann, J.L.2
Starrett, G.J.3
-
83
-
-
84863368426
-
First-in-class small molecule inhibitors of the single-strand DNA cytosine deaminase APOBEC3G
-
Li M, Shandilya SMD, Carpenter MA et al. First-in-class small molecule inhibitors of the single-strand DNA cytosine deaminase APOBEC3G. ACS Chem Biol 2012; 7(3): 506-517.
-
(2012)
ACS Chem Biol
, vol.7
, Issue.3
, pp. 506-517
-
-
Li, M.1
Shandilya, S.M.D.2
Carpenter, M.A.3
-
84
-
-
84871671011
-
Small-molecule APOBEC3G DNA cytosine deaminase inhibitors based on a 4-amino-1, 2, 4-triazole- 3-thiol scaffold
-
Olson ME, Li M, Harris RS, Harki DA. Small-molecule APOBEC3G DNA cytosine deaminase inhibitors based on a 4-amino-1, 2, 4-triazole- 3-thiol scaffold. ChemMedChem 2013; 8: 112-117.
-
(2013)
ChemMedChem
, vol.8
, pp. 112-117
-
-
Olson, M.E.1
Li, M.2
Harris, R.S.3
Harki, D.A.4
-
85
-
-
84942280010
-
Oxidative reactivities of 2- furylquinolines: ubiquitous scaffolds in common high-throughput screening libraries
-
Olson ME, Abate-Pella D, Perkins AL et al. Oxidative reactivities of 2- furylquinolines: ubiquitous scaffolds in common high-throughput screening libraries. J Med Chem 2015; 58: 7419-7430.
-
(2015)
J Med Chem
, vol.58
, pp. 7419-7430
-
-
Olson, M.E.1
Abate-Pella, D.2
Perkins, A.L.3
-
86
-
-
85046086162
-
Comprehensive molecular characterization and analysis ofmuscle-invasive urothelial carcinomas
-
Lerner SP, Robertson G, Kim J et al. Comprehensive molecular characterization and analysis ofmuscle-invasive urothelial carcinomas. J Clin Oncol 2017; 35: 4500-4500.
-
(2017)
J Clin Oncol
, vol.35
, pp. 4500-4500
-
-
Lerner, S.P.1
Robertson, G.2
Kim, J.3
-
87
-
-
85046102124
-
APOBEC-mediated mutagenesis in urothelial carcinoma is associated with improved survival, mutations in DNA damage response genes, and immune response
-
Glaser AP, Fantini D, Rimar KJ, Meeks JJ. APOBEC-mediated mutagenesis in urothelial carcinoma is associated with improved survival, mutations in DNA damage response genes, and immune response. bioRxiv 2017.
-
(2017)
bioRxiv
-
-
Glaser, A.P.1
Fantini, D.2
Rimar, K.J.3
Meeks, J.J.4
-
88
-
-
84979732333
-
Comprehensive transcriptional analysis of early-stage urothelial carcinoma
-
Hedegaard J, Lamy P, Nordentoft I et al. Comprehensive transcriptional analysis of early-stage urothelial carcinoma. Cancer Cell 2016; 30: 27-42.
-
(2016)
Cancer Cell
, vol.30
, pp. 27-42
-
-
Hedegaard, J.1
Lamy, P.2
Nordentoft, I.3
-
89
-
-
84974602731
-
Correlation of APOBEC MRNA expression with overall survival and PD-L1 expression in urothelial carcinoma
-
Mullane SA, Werner L, Rosenberg J et al. Correlation of APOBEC MRNA expression with overall survival and PD-L1 expression in urothelial carcinoma. Sci Rep 2016; 6: 27702.
-
(2016)
Sci Rep
, vol.6
, pp. 27702
-
-
Mullane, S.A.1
Werner, L.2
Rosenberg, J.3
-
90
-
-
84988844163
-
APOBEC3G expression correlates with T cell infiltration and improved clinical outcomes in highgrade serous ovarian carcinoma
-
Leonard B, Starrett GJ, Maurer MJ et al. APOBEC3G expression correlates with T cell infiltration and improved clinical outcomes in highgrade serous ovarian carcinoma. Clin Cancer Res 2017; 22(18): 4746-4755.
-
(2017)
Clin Cancer Res
, vol.22
, Issue.18
, pp. 4746-4755
-
-
Leonard, B.1
Starrett, G.J.2
Maurer, M.J.3
|