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Volumn 10, Issue 7, 2014, Pages

Human APOBEC3 Induced Mutation of Human Immunodeficiency Virus Type-1 Contributes to Adaptation and Evolution in Natural Infection

Author keywords

[No Author keywords available]

Indexed keywords

APOBEC3 PROTEIN, HUMAN; APOBEC3D PROTEIN, HUMAN; APOBEC3F PROTEIN, HUMAN; APOBEC3G PROTEIN, HUMAN; APOBEC3H PROTEIN, HUMAN; CYTIDINE DEAMINASE; CYTOSINE DEAMINASE; HYDROLASE; VIRUS DNA;

EID: 84905399319     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1004281     Document Type: Article
Times cited : (78)

References (68)
  • 1
    • 67249140561 scopus 로고    scopus 로고
    • HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC
    • Wood N, Bhattacharya T, Keele BF, Giorgi E, Liu M, et al. (2009) HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC. PLoS Pathog 5: e1000414.
    • (2009) PLoS Pathog , vol.5
    • Wood, N.1    Bhattacharya, T.2    Keele, B.F.3    Giorgi, E.4    Liu, M.5
  • 2
    • 0029075130 scopus 로고
    • Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
    • Mansky LM, Temin HM, (1995) Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J Virol 69: 5087-5094.
    • (1995) J Virol , vol.69 , pp. 5087-5094
    • Mansky, L.M.1    Temin, H.M.2
  • 3
    • 0033769416 scopus 로고    scopus 로고
    • Genetic diversity of HIV-1: the moving target
    • Peeters M, Sharp PM, (2000) Genetic diversity of HIV-1: the moving target. AIDS 14 Suppl 3: S129-140.
    • (2000) AIDS , vol.14 , Issue.SUPPL
    • Peeters, M.1    Sharp, P.M.2
  • 4
    • 0027064537 scopus 로고
    • Lack of evidence for proofreading mechanisms associated with an RNA virus polymerase
    • Steinhauer DA, Domingo E, Holland JJ, (1992) Lack of evidence for proofreading mechanisms associated with an RNA virus polymerase. Gene 122: 281-288.
    • (1992) Gene , vol.122 , pp. 281-288
    • Steinhauer, D.A.1    Domingo, E.2    Holland, J.J.3
  • 6
    • 33750210516 scopus 로고    scopus 로고
    • Twin gradients in APOBEC3 edited HIV-1 DNA reflect the dynamics of lentiviral replication
    • Suspene R, Rusniok C, Vartanian JP, Wain-Hobson S, (2006) Twin gradients in APOBEC3 edited HIV-1 DNA reflect the dynamics of lentiviral replication. Nucleic Acids Res 34: 4677-4684.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4677-4684
    • Suspene, R.1    Rusniok, C.2    Vartanian, J.P.3    Wain-Hobson, S.4
  • 7
    • 2342469410 scopus 로고    scopus 로고
    • APOBEC3G is a single-stranded DNA cytidine deaminase and functions independently of HIV reverse transcriptase
    • Suspene R, Sommer P, Henry M, Ferris S, Guetard D, et al. (2004) APOBEC3G is a single-stranded DNA cytidine deaminase and functions independently of HIV reverse transcriptase. Nucleic Acids Res 32: 2421-2429.
    • (2004) Nucleic Acids Res , vol.32 , pp. 2421-2429
    • Suspene, R.1    Sommer, P.2    Henry, M.3    Ferris, S.4    Guetard, D.5
  • 8
    • 2342633240 scopus 로고    scopus 로고
    • Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome
    • Yu Q, Konig R, Pillai S, Chiles K, Kearney M, et al. (2004) Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome. Nat Struct Mol Biol 11: 435-442.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 435-442
    • Yu, Q.1    Konig, R.2    Pillai, S.3    Chiles, K.4    Kearney, M.5
  • 9
    • 48949118733 scopus 로고    scopus 로고
    • HIV-1 Vif, APOBEC, and intrinsic immunity
    • Goila-Gaur R, Strebel K, (2008) HIV-1 Vif, APOBEC, and intrinsic immunity. Retrovirology 5: 51.
    • (2008) Retrovirology , vol.5 , pp. 51
    • Goila-Gaur, R.1    Strebel, K.2
  • 11
    • 33847636341 scopus 로고    scopus 로고
    • APOBEC-mediated viral restriction: not simply editing?
    • Holmes RK, Malim MH, Bishop KN, (2007) APOBEC-mediated viral restriction: not simply editing? Trends Biochem Sci 32: 118-128.
    • (2007) Trends Biochem Sci , vol.32 , pp. 118-128
    • Holmes, R.K.1    Malim, M.H.2    Bishop, K.N.3
  • 12
    • 4143092717 scopus 로고    scopus 로고
    • Cytidine deamination of retroviral DNA by diverse APOBEC proteins
    • Bishop KN, Holmes RK, Sheehy AM, Davidson NO, Cho SJ, et al. (2004) Cytidine deamination of retroviral DNA by diverse APOBEC proteins. Curr Biol 14: 1392-1396.
    • (2004) Curr Biol , vol.14 , pp. 1392-1396
    • Bishop, K.N.1    Holmes, R.K.2    Sheehy, A.M.3    Davidson, N.O.4    Cho, S.J.5
  • 13
    • 4143071549 scopus 로고    scopus 로고
    • APOBEC3F properties and hypermutation preferences indicate activity against HIV-1 in vivo
    • Liddament MT, Brown WL, Schumacher AJ, Harris RS, (2004) APOBEC3F properties and hypermutation preferences indicate activity against HIV-1 in vivo. Curr Biol 14: 1385-1391.
    • (2004) Curr Biol , vol.14 , pp. 1385-1391
    • Liddament, M.T.1    Brown, W.L.2    Schumacher, A.J.3    Harris, R.S.4
  • 14
    • 84872649870 scopus 로고    scopus 로고
    • Retroelements versus APOBEC3 family members: No great escape from the magnificent seven
    • Arias JF, Koyama T, Kinomoto M, Tokunaga K, (2012) Retroelements versus APOBEC3 family members: No great escape from the magnificent seven. Front Microbiol 3: 275.
    • (2012) Front Microbiol , vol.3 , pp. 275
    • Arias, J.F.1    Koyama, T.2    Kinomoto, M.3    Tokunaga, K.4
  • 15
    • 42649120310 scopus 로고    scopus 로고
    • The APOBEC3 cytidine deaminases: an innate defensive network opposing exogenous retroviruses and endogenous retroelements
    • Chiu YL, Greene WC, (2008) The APOBEC3 cytidine deaminases: an innate defensive network opposing exogenous retroviruses and endogenous retroelements. Annu Rev Immunol 26: 317-353.
    • (2008) Annu Rev Immunol , vol.26 , pp. 317-353
    • Chiu, Y.L.1    Greene, W.C.2
  • 16
    • 84856009926 scopus 로고    scopus 로고
    • Vif hijacks CBF-beta to degrade APOBEC3G and promote HIV-1 infection
    • Jager S, Kim DY, Hultquist JF, Shindo K, LaRue RS, et al. (2012) Vif hijacks CBF-beta to degrade APOBEC3G and promote HIV-1 infection. Nature 481: 371-375.
    • (2012) Nature , vol.481 , pp. 371-375
    • Jager, S.1    Kim, D.Y.2    Hultquist, J.F.3    Shindo, K.4    LaRue, R.S.5
  • 17
    • 60049083257 scopus 로고    scopus 로고
    • APOBEC proteins and intrinsic resistance to HIV-1 infection
    • Malim MH, (2009) APOBEC proteins and intrinsic resistance to HIV-1 infection. Philos Trans R Soc Lond B Biol Sci 364: 675-687.
    • (2009) Philos Trans R Soc Lond B Biol Sci , vol.364 , pp. 675-687
    • Malim, M.H.1
  • 18
    • 0344413641 scopus 로고    scopus 로고
    • The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif
    • Sheehy AM, Gaddis NC, Malim MH, (2003) The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif. Nat Med 9: 1404-1407.
    • (2003) Nat Med , vol.9 , pp. 1404-1407
    • Sheehy, A.M.1    Gaddis, N.C.2    Malim, M.H.3
  • 19
    • 0242578406 scopus 로고    scopus 로고
    • Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex
    • Yu X, Yu Y, Liu B, Luo K, Kong W, et al. (2003) Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex. Science 302: 1056-1060.
    • (2003) Science , vol.302 , pp. 1056-1060
    • Yu, X.1    Yu, Y.2    Liu, B.3    Luo, K.4    Kong, W.5
  • 20
    • 0034878971 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 DNA sequences genetically damaged by hypermutation are often abundant in patient peripheral blood mononuclear cells and may be generated during near-simultaneous infection and activation of CD4(+) T cells
    • Janini M, Rogers M, Birx DR, McCutchan FE, (2001) Human immunodeficiency virus type 1 DNA sequences genetically damaged by hypermutation are often abundant in patient peripheral blood mononuclear cells and may be generated during near-simultaneous infection and activation of CD4(+) T cells. J Virol 75: 7973-7986.
    • (2001) J Virol , vol.75 , pp. 7973-7986
    • Janini, M.1    Rogers, M.2    Birx, D.R.3    McCutchan, F.E.4
  • 21
    • 77956828453 scopus 로고    scopus 로고
    • Human APOBEC3G-mediated editing can promote HIV-1 sequence diversification and accelerate adaptation to selective pressure
    • Kim EY, Bhattacharya T, Kunstman K, Swantek P, Koning FA, et al. (2010) Human APOBEC3G-mediated editing can promote HIV-1 sequence diversification and accelerate adaptation to selective pressure. J Virol 84: 10402-10405.
    • (2010) J Virol , vol.84 , pp. 10402-10405
    • Kim, E.Y.1    Bhattacharya, T.2    Kunstman, K.3    Swantek, P.4    Koning, F.A.5
  • 22
    • 66349132212 scopus 로고    scopus 로고
    • Likely role of APOBEC3G-mediated G-to-A mutations in HIV-1 evolution and drug resistance
    • Jern P, Russell RA, Pathak VK, Coffin JM, (2009) Likely role of APOBEC3G-mediated G-to-A mutations in HIV-1 evolution and drug resistance. PLoS Pathog 5: e1000367.
    • (2009) PLoS Pathog , vol.5
    • Jern, P.1    Russell, R.A.2    Pathak, V.K.3    Coffin, J.M.4
  • 23
    • 44449093971 scopus 로고    scopus 로고
    • Cytidine deamination induced HIV-1 drug resistance
    • Mulder LC, Harari A, Simon V, (2008) Cytidine deamination induced HIV-1 drug resistance. Proc Natl Acad Sci U S A 105: 5501-5506.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 5501-5506
    • Mulder, L.C.1    Harari, A.2    Simon, V.3
  • 24
    • 44649102135 scopus 로고    scopus 로고
    • Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
    • Keele BF, Giorgi EE, Salazar-Gonzalez JF, Decker JM, Pham KT, et al. (2008) Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci U S A 105: 7552-7557.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 7552-7557
    • Keele, B.F.1    Giorgi, E.E.2    Salazar-Gonzalez, J.F.3    Decker, J.M.4    Pham, K.T.5
  • 25
    • 67649888155 scopus 로고    scopus 로고
    • Natural variation in Vif: differential impact on APOBEC3G/3F and a potential role in HIV-1 diversification
    • Simon V, Zennou V, Murray D, Huang Y, Ho DD, et al. (2005) Natural variation in Vif: differential impact on APOBEC3G/3F and a potential role in HIV-1 diversification. PLoS Pathog 1: e6.
    • (2005) PLoS Pathog , vol.1
    • Simon, V.1    Zennou, V.2    Murray, D.3    Huang, Y.4    Ho, D.D.5
  • 26
    • 84873028668 scopus 로고    scopus 로고
    • Suppression of HIV-1 infection by APOBEC3 proteins in primary human CD4(+) T cells is associated with inhibition of processive reverse transcription as well as excessive cytidine deamination
    • Gillick K, Pollpeter D, Phalora P, Kim EY, Wolinsky SM, et al. (2013) Suppression of HIV-1 infection by APOBEC3 proteins in primary human CD4(+) T cells is associated with inhibition of processive reverse transcription as well as excessive cytidine deamination. J Virol 87: 1508-1517.
    • (2013) J Virol , vol.87 , pp. 1508-1517
    • Gillick, K.1    Pollpeter, D.2    Phalora, P.3    Kim, E.Y.4    Wolinsky, S.M.5
  • 27
    • 76149113235 scopus 로고    scopus 로고
    • The antiviral factor APOBEC3G improves CTL recognition of cultured HIV-infected T cells
    • Casartelli N, Guivel-Benhassine F, Bouziat R, Brandler S, Schwartz O, et al. (2010) The antiviral factor APOBEC3G improves CTL recognition of cultured HIV-infected T cells. J Exp Med 207: 39-49.
    • (2010) J Exp Med , vol.207 , pp. 39-49
    • Casartelli, N.1    Guivel-Benhassine, F.2    Bouziat, R.3    Brandler, S.4    Schwartz, O.5
  • 28
    • 50149098961 scopus 로고    scopus 로고
    • Conserved footprints of APOBEC3G on Hypermutated human immunodeficiency virus type 1 and human endogenous retrovirus HERV-K(HML2) sequences
    • Armitage AE, Katzourakis A, de Oliveira T, Welch JJ, Belshaw R, et al. (2008) Conserved footprints of APOBEC3G on Hypermutated human immunodeficiency virus type 1 and human endogenous retrovirus HERV-K(HML2) sequences. J Virol 82: 8743-8761.
    • (2008) J Virol , vol.82 , pp. 8743-8761
    • Armitage, A.E.1    Katzourakis, A.2    de Oliveira, T.3    Welch, J.J.4    Belshaw, R.5
  • 29
    • 80055105950 scopus 로고    scopus 로고
    • Human and rhesus APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H demonstrate a conserved capacity to restrict Vif-deficient HIV-1
    • Hultquist JF, Lengyel JA, Refsland EW, LaRue RS, Lackey L, et al. (2011) Human and rhesus APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H demonstrate a conserved capacity to restrict Vif-deficient HIV-1. J Virol 85: 11220-11234.
    • (2011) J Virol , vol.85 , pp. 11220-11234
    • Hultquist, J.F.1    Lengyel, J.A.2    Refsland, E.W.3    LaRue, R.S.4    Lackey, L.5
  • 30
    • 3242712200 scopus 로고    scopus 로고
    • A second human antiretroviral factor, APOBEC3F, is suppressed by the HIV-1 and HIV-2 Vif proteins
    • Wiegand HL, Doehle BP, Bogerd HP, Cullen BR, (2004) A second human antiretroviral factor, APOBEC3F, is suppressed by the HIV-1 and HIV-2 Vif proteins. The EMBO Journal 23: 2451-2458.
    • (2004) The EMBO Journal , vol.23 , pp. 2451-2458
    • Wiegand, H.L.1    Doehle, B.P.2    Bogerd, H.P.3    Cullen, B.R.4
  • 31
    • 77957901912 scopus 로고    scopus 로고
    • Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing
    • Fischer W, Ganusov VV, Giorgi EE, Hraber PT, Keele BF, et al. (2010) Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing. PLoS One 5: e12303.
    • (2010) PLoS One , vol.5
    • Fischer, W.1    Ganusov, V.V.2    Giorgi, E.E.3    Hraber, P.T.4    Keele, B.F.5
  • 32
    • 84889677831 scopus 로고    scopus 로고
    • Mutational and fitness landscapes of an RNA virus revealed through population sequencing
    • Acevedo A, Brodsky L, Andino R, (2014) Mutational and fitness landscapes of an RNA virus revealed through population sequencing. Nature 505: 686-690.
    • (2014) Nature , vol.505 , pp. 686-690
    • Acevedo, A.1    Brodsky, L.2    Andino, R.3
  • 33
    • 84859248538 scopus 로고    scopus 로고
    • APOBEC3G-induced hypermutation of human immunodeficiency virus type-1 is typically a discrete "all or nothing" phenomenon
    • Armitage AE, Deforche K, Chang CH, Wee E, Kramer B, et al. (2012) APOBEC3G-induced hypermutation of human immunodeficiency virus type-1 is typically a discrete "all or nothing" phenomenon. PLoS Genet 8: e1002550.
    • (2012) PLoS Genet , vol.8
    • Armitage, A.E.1    Deforche, K.2    Chang, C.H.3    Wee, E.4    Kramer, B.5
  • 34
    • 84872436943 scopus 로고    scopus 로고
    • Enhanced CD4+ T-cell recovery with earlier HIV-1 antiretroviral therapy
    • Le T, Wright EJ, Smith DM, He W, Catano G, et al. (2013) Enhanced CD4+ T-cell recovery with earlier HIV-1 antiretroviral therapy. N Engl J Med 368: 218-230.
    • (2013) N Engl J Med , vol.368 , pp. 218-230
    • Le, T.1    Wright, E.J.2    Smith, D.M.3    He, W.4    Catano, G.5
  • 35
    • 58149374613 scopus 로고    scopus 로고
    • Polymorphisms and splice variants influence the antiretroviral activity of human APOBEC3H
    • Harari A, Ooms M, Mulder LC, Simon V, (2009) Polymorphisms and splice variants influence the antiretroviral activity of human APOBEC3H. J Virol 83: 295-303.
    • (2009) J Virol , vol.83 , pp. 295-303
    • Harari, A.1    Ooms, M.2    Mulder, L.C.3    Simon, V.4
  • 36
    • 79961190975 scopus 로고    scopus 로고
    • Polymorphism in human APOBEC3H affects a phenotype dominant for subcellular localization and antiviral activity
    • Li MM, Emerman M, (2011) Polymorphism in human APOBEC3H affects a phenotype dominant for subcellular localization and antiviral activity. J Virol 85: 8197-8207.
    • (2011) J Virol , vol.85 , pp. 8197-8207
    • Li, M.M.1    Emerman, M.2
  • 38
    • 79952611071 scopus 로고    scopus 로고
    • Analysis of human APOBEC3H haplotypes and anti-human immunodeficiency virus type 1 activity
    • Wang X, Abudu A, Son S, Dang Y, Venta PJ, et al. (2011) Analysis of human APOBEC3H haplotypes and anti-human immunodeficiency virus type 1 activity. J Virol 85: 3142-3152.
    • (2011) J Virol , vol.85 , pp. 3142-3152
    • Wang, X.1    Abudu, A.2    Son, S.3    Dang, Y.4    Venta, P.J.5
  • 39
    • 84864456753 scopus 로고    scopus 로고
    • Reduced APOBEC3H variant anti-viral activities are associated with altered RNA binding activities
    • Zhen A, Du J, Zhou X, Xiong Y, Yu XF, (2012) Reduced APOBEC3H variant anti-viral activities are associated with altered RNA binding activities. PLoS One 7: e38771.
    • (2012) PLoS One , vol.7
    • Zhen, A.1    Du, J.2    Zhou, X.3    Xiong, Y.4    Yu, X.F.5
  • 41
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    • Anisimova M, Gascuel O, (2006) Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst Biol 55: 539-552.
    • (2006) Syst Biol , vol.55 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 42
    • 0002222776 scopus 로고    scopus 로고
    • HIV Signature and Sequence Variation Analysis
    • Allen G. Rodrigo and Gerald HLearn, eds. ed. Dordrecht, Netherlands: Kluwer Academic Publishers
    • Korber B (2000) HIV Signature and Sequence Variation Analysis. Computational Analysis of HIV Molecular Sequences. Allen G. Rodrigo and Gerald HLearn, eds. ed. Dordrecht, Netherlands: Kluwer Academic Publishers. pp. 55-72.
    • (2000) Computational Analysis of HIV Molecular Sequences , pp. 55-72
    • Korber, B.1
  • 43
    • 0034625771 scopus 로고    scopus 로고
    • Timing the ancestor of the HIV-1 pandemic strains
    • Korber B, Muldoon M, Theiler J, Gao F, Gupta R, et al. (2000) Timing the ancestor of the HIV-1 pandemic strains. Science 288: 1789-1796.
    • (2000) Science , vol.288 , pp. 1789-1796
    • Korber, B.1    Muldoon, M.2    Theiler, J.3    Gao, F.4    Gupta, R.5
  • 44
    • 0032844525 scopus 로고    scopus 로고
    • The molecular clock of HIV-1 unveiled through analysis of a known transmission history
    • Leitner T, Albert J, (1999) The molecular clock of HIV-1 unveiled through analysis of a known transmission history. Proc Natl Acad Sci U S A 96: 10752-10757.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 10752-10757
    • Leitner, T.1    Albert, J.2
  • 45
    • 77649338614 scopus 로고    scopus 로고
    • The evolutionary rate dynamically tracks changes in HIV-1 epidemics: application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data
    • Maljkovic Berry I, Athreya G, Kothari M, Daniels M, Bruno WJ, et al. (2009) The evolutionary rate dynamically tracks changes in HIV-1 epidemics: application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data. Epidemics 1: 230-239.
    • (2009) Epidemics , vol.1 , pp. 230-239
    • Maljkovic Berry, I.1    Athreya, G.2    Kothari, M.3    Daniels, M.4    Bruno, W.J.5
  • 46
    • 0014845980 scopus 로고
    • Dollo on Dollo's law: irreversibility and the status of evolutionary laws
    • Gould SJ, (1970) Dollo on Dollo's law: irreversibility and the status of evolutionary laws. J Hist Biol 3: 189-212.
    • (1970) J Hist Biol , vol.3 , pp. 189-212
    • Gould, S.J.1
  • 47
    • 27144513224 scopus 로고    scopus 로고
    • Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution
    • Allen TM, Altfeld M, Geer SC, Kalife ET, Moore C, et al. (2005) Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution. J Virol 79: 13239-13249.
    • (2005) J Virol , vol.79 , pp. 13239-13249
    • Allen, T.M.1    Altfeld, M.2    Geer, S.C.3    Kalife, E.T.4    Moore, C.5
  • 48
    • 79952213493 scopus 로고    scopus 로고
    • Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection
    • Ferrari G, Korber B, Goonetilleke N, Liu MK, Turnbull EL, et al. (2011) Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection. PLoS Pathog 7: e1001273.
    • (2011) PLoS Pathog , vol.7
    • Ferrari, G.1    Korber, B.2    Goonetilleke, N.3    Liu, M.K.4    Turnbull, E.L.5
  • 49
    • 0035912222 scopus 로고    scopus 로고
    • Cellular immune responses to HIV
    • McMichael AJ, Rowland-Jones SL, (2001) Cellular immune responses to HIV. Nature 410: 980-987.
    • (2001) Nature , vol.410 , pp. 980-987
    • McMichael, A.J.1    Rowland-Jones, S.L.2
  • 50
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
    • Pond SL, Frost SD, (2005) Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21: 2531-2533.
    • (2005) Bioinformatics , vol.21 , pp. 2531-2533
    • Pond, S.L.1    Frost, S.D.2
  • 51
    • 77951441141 scopus 로고    scopus 로고
    • APOBEC3F and APOBEC3G inhibit HIV-1 DNA integration by different mechanisms
    • Mbisa JL, Bu W, Pathak VK, (2010) APOBEC3F and APOBEC3G inhibit HIV-1 DNA integration by different mechanisms. J Virol 84: 5250-5259.
    • (2010) J Virol , vol.84 , pp. 5250-5259
    • Mbisa, J.L.1    Bu, W.2    Pathak, V.K.3
  • 52
    • 84897405060 scopus 로고    scopus 로고
    • Different Mutagenic Potential of HIV-1 Restriction Factors APOBEC3G and APOBEC3F Is Determined by Distinct Single-Stranded DNA Scanning Mechanisms
    • Ara A, Love RP, Chelico L, (2014) Different Mutagenic Potential of HIV-1 Restriction Factors APOBEC3G and APOBEC3F Is Determined by Distinct Single-Stranded DNA Scanning Mechanisms. PLoS Pathog 10: e1004024.
    • (2014) PLoS Pathog , vol.10
    • Ara, A.1    Love, R.P.2    Chelico, L.3
  • 54
    • 84876844318 scopus 로고    scopus 로고
    • Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and non-conserved structural motifs
    • Pollom E, Dang KK, Potter EL, Gorelick RJ, Burch CL, et al. (2013) Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and non-conserved structural motifs. PLoS Pathog 9: e1003294.
    • (2013) PLoS Pathog , vol.9
    • Pollom, E.1    Dang, K.K.2    Potter, E.L.3    Gorelick, R.J.4    Burch, C.L.5
  • 55
    • 0035936781 scopus 로고    scopus 로고
    • HIV-1 sequence variation: drift, shift, and attenuation
    • Malim MH, Emerman M, (2001) HIV-1 sequence variation: drift, shift, and attenuation. Cell 104: 469-472.
    • (2001) Cell , vol.104 , pp. 469-472
    • Malim, M.H.1    Emerman, M.2
  • 56
    • 84869049177 scopus 로고    scopus 로고
    • HIV-1 Replication and APOBEC3 Antiviral Activity Are Not Regulated by P Bodies
    • Phalora PK, Sherer NM, Wolinsky SM, Swanson CM, Malim MH, (2012) HIV-1 Replication and APOBEC3 Antiviral Activity Are Not Regulated by P Bodies. J Virol 86: 11712-11724.
    • (2012) J Virol , vol.86 , pp. 11712-11724
    • Phalora, P.K.1    Sherer, N.M.2    Wolinsky, S.M.3    Swanson, C.M.4    Malim, M.H.5
  • 57
    • 84873578476 scopus 로고    scopus 로고
    • High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array System for simplified amplicon library preparation
    • Moonsamy PV, Williams T, Bonella P, Holcomb CL, Hoglund BN, et al. (2013) High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array System for simplified amplicon library preparation. Tissue Antigens 81: 141-149.
    • (2013) Tissue Antigens , vol.81 , pp. 141-149
    • Moonsamy, P.V.1    Williams, T.2    Bonella, P.3    Holcomb, C.L.4    Hoglund, B.N.5
  • 59
    • 84858739096 scopus 로고    scopus 로고
    • Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II
    • Archer J, Baillie G, Watson SJ, Kellam P, Rambaut A, et al. (2012) Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II. BMC Bioinformatics 13: 47.
    • (2012) BMC Bioinformatics , vol.13 , pp. 47
    • Archer, J.1    Baillie, G.2    Watson, S.J.3    Kellam, P.4    Rambaut, A.5
  • 60
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson WR, Lipman DJ, (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85: 2444-2448.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 61
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 62
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 63
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after all: a comparison of methods for detecting amino acid sites under selection
    • Kosakovsky Pond SL, Frost SD, (2005) Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22: 1208-1222.
    • (2005) Mol Biol Evol , vol.22 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.2
  • 64
  • 65
    • 79551676183 scopus 로고    scopus 로고
    • A multi-site study using high-resolution HLA genotyping by next generation sequencing
    • Holcomb CL, Hoglund B, Anderson MW, Blake LA, Bohme I, et al. (2011) A multi-site study using high-resolution HLA genotyping by next generation sequencing. Tissue Antigens 77: 206-217.
    • (2011) Tissue Antigens , vol.77 , pp. 206-217
    • Holcomb, C.L.1    Hoglund, B.2    Anderson, M.W.3    Blake, L.A.4    Bohme, I.5
  • 67
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team,. Vienna, Austria: R Foundation for Statistical Computing
    • R Development Core Team (2013) R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing.
    • (2013) R: A Language and Environment for Statistical Computing


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