-
1
-
-
84925497848
-
Hypermutation in human cancer genomes: Footprints and mechanisms
-
PMID: 25417590
-
Roberts SA, Gordenin DA. Hypermutation in human cancer genomes: footprints and mechanisms. Nature reviews. 2014; 14(12):786-800. doi: 10.1038/nrc3816 PMID: 25417590.
-
(2014)
Nature Reviews
, vol.14
, Issue.12
, pp. 786-800
-
-
Roberts, S.A.1
Gordenin, D.A.2
-
2
-
-
85018197468
-
APOBEC enzymes: Mutagenic fuel for cancer evolution and heterogeneity
-
PMID: 26091828; PubMed Central PMCID: PMC4497973
-
Swanton C, McGranahan N, Starrett GJ, Harris RS. APOBEC enzymes: mutagenic fuel for cancer evolution and heterogeneity. Cancer Discov. 2015; 5(7):704-12. doi: 10.1158/2159-8290.CD-15-0344 PMID: 26091828; PubMed Central PMCID: PMC4497973.
-
(2015)
Cancer Discov
, vol.5
, Issue.7
, pp. 704-712
-
-
Swanton, C.1
McGranahan, N.2
Starrett, G.J.3
Harris, R.S.4
-
3
-
-
84929045979
-
APOBEC3 genes: Retroviral restriction factors to cancer drivers
-
PMID: 25820175
-
Henderson S, Fenton T. APOBEC3 genes: retroviral restriction factors to cancer drivers. Trends Mol Med. 2015; 21(5):274-84. doi: 10.1016/j.molmed.2015.02.007 PMID: 25820175.
-
(2015)
Trends Mol Med
, vol.21
, Issue.5
, pp. 274-284
-
-
Henderson, S.1
Fenton, T.2
-
4
-
-
84906303775
-
Mechanisms underlying mutational signatures in human cancers
-
PMID: 24981601
-
Helleday T, Eshtad S, Nik-Zainal S. Mechanisms underlying mutational signatures in human cancers. Nat Rev Genet. 2014; 15(9):585-98. doi: 10.1038/nrg3729 PMID: 24981601.
-
(2014)
Nat Rev Genet
, vol.15
, Issue.9
, pp. 585-598
-
-
Helleday, T.1
Eshtad, S.2
Nik-Zainal, S.3
-
5
-
-
84882837534
-
Signatures of mutational processes in human cancer
-
Epub 2013/08/16. nature12477 [pii]. PMID: 23945592
-
Alexandrov LB, Nik-Zainal S, Wedge DC, Aparicio SA, Behjati S, Biankin AV, et al. Signatures of mutational processes in human cancer. Nature. 2013; 500(7463):415-21. Epub 2013/08/16. doi: 10.1038/nature12477 nature12477 [pii]. PMID: 23945592.
-
(2013)
Nature
, vol.500
, Issue.7463
, pp. 415-421
-
-
Alexandrov, L.B.1
Nik-Zainal, S.2
Wedge, D.C.3
Aparicio, S.A.4
Behjati, S.5
Biankin, A.V.6
-
6
-
-
0001007178
-
UV damage, DNA repair and skin carcinogenesis
-
Epub 2002/03/19. PMID: 11897551
-
Cleaver JE, Crowley E. UV damage, DNA repair and skin carcinogenesis. Front Biosci. 2002; 7:d1024-43. Epub 2002/03/19. PMID: 11897551.
-
(2002)
Front Biosci
, vol.7
, pp. d1024-d1043
-
-
Cleaver, J.E.1
Crowley, E.2
-
7
-
-
84867840442
-
Lung carcinogenesis by tobacco smoke
-
Epub 2012/09/05. PMID: 22945513; PubMed Central PMCID: PMC3479369
-
Hecht SS. Lung carcinogenesis by tobacco smoke. Int J Cancer. 2012; 131(12):2724-32. Epub 2012/09/05. doi: 10.1002/ijc.27816 PMID: 22945513; PubMed Central PMCID: PMC3479369.
-
(2012)
Int J Cancer
, vol.131
, Issue.12
, pp. 2724-2732
-
-
Hecht, S.S.1
-
8
-
-
84883872416
-
Genome-wide mutational signatures of aristolochic acid and its application as a screening tool
-
PMID: 23926199
-
Poon SL, Pang ST, McPherson JR, Yu W, Huang KK, Guan P, et al. Genome-wide mutational signatures of aristolochic acid and its application as a screening tool. Sci Transl Med. 2013; 5(197):197ra01. doi: 10.1126/scitranslmed.3006086 PMID: 23926199.
-
(2013)
Sci Transl Med
, vol.5
, Issue.197
-
-
Poon, S.L.1
Pang, S.T.2
McPherson, J.R.3
Yu, W.4
Huang, K.K.5
Guan, P.6
-
9
-
-
84930195030
-
Mutation signatures implicate aristolochic acid in bladder cancer development
-
PMID: 26015808; PubMed Central PMCID: PMC4443665
-
Poon SL, Huang MN, Choo Y, McPherson JR, Yu W, Heng HL, et al. Mutation signatures implicate aristolochic acid in bladder cancer development. Genome medicine. 2015; 7(1):38. doi: 10.1186/s13073-015-0161-3 PMID: 26015808; PubMed Central PMCID: PMC4443665.
-
(2015)
Genome Medicine
, vol.7
, Issue.1
, pp. 38
-
-
Poon, S.L.1
Huang, M.N.2
Choo, Y.3
McPherson, J.R.4
Yu, W.5
Heng, H.L.6
-
10
-
-
84921367731
-
Synthetic lethality and cancer therapy: Lessons learned from the development of PARP inhibitors
-
PMID: 25341009
-
Lord CJ, Tutt AN, Ashworth A. Synthetic lethality and cancer therapy: lessons learned from the development of PARP inhibitors. Annu Rev Med. 2015; 66:455-70. doi: 10.1146/annurev-med-050913-022545 PMID: 25341009.
-
(2015)
Annu Rev Med
, vol.66
, pp. 455-470
-
-
Lord, C.J.1
Tutt, A.N.2
Ashworth, A.3
-
11
-
-
84861541343
-
Mutational processes molding the genomes of 21 breast cancers
-
Epub 2012/05/23. PMID: 22608084
-
Nik-Zainal S, Alexandrov LB, Wedge DC, Van Loo P, Greenman CD, Raine K, et al. Mutational processes molding the genomes of 21 breast cancers. Cell. 2012; 149(5):979-93. Epub 2012/05/23. S0092-8674(12)00528-4 [pii] doi: 10.1016/j.cell.2012.04.024 PMID: 22608084.
-
(2012)
Cell
, vol.149
, Issue.5
, pp. 979-993
-
-
Nik-Zainal, S.1
Alexandrov, L.B.2
Wedge, D.C.3
Van Loo, P.4
Greenman, C.D.5
Raine, K.6
-
12
-
-
84861460657
-
Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions
-
PMID: 22607975; PubMed Central PMCID: PMC3361558
-
Roberts SA, Sterling J, Thompson C, Harris S, Mav D, Shah R, et al. Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions. Mol Cell. 2012; 46(4):424-35. doi: 10.1016/j.molcel.2012.03.030 PMID: 22607975; PubMed Central PMCID: PMC3361558.
-
(2012)
Mol Cell
, vol.46
, Issue.4
, pp. 424-435
-
-
Roberts, S.A.1
Sterling, J.2
Thompson, C.3
Harris, S.4
Mav, D.5
Shah, R.6
-
13
-
-
84874188583
-
APOBEC3B is an enzymatic source of mutation in breast cancer
-
Epub 2013/02/08. nature11881 [pii]. PMID: 23389445
-
Burns MB, Lackey L, Carpenter MA, Rathore A, Land AM, Leonard B, et al. APOBEC3B is an enzymatic source of mutation in breast cancer. Nature. 2013; 494(7437):366-70. Epub 2013/02/08. doi: 10.1038/nature11881 nature11881 [pii]. PMID: 23389445.
-
(2013)
Nature
, vol.494
, Issue.7437
, pp. 366-370
-
-
Burns, M.B.1
Lackey, L.2
Carpenter, M.A.3
Rathore, A.4
Land, A.M.5
Leonard, B.6
-
14
-
-
84883356320
-
Evidence for APOBEC3B mutagenesis in multiple human cancers
-
Epub 2013/07/16. ng.2701 [pii]. PMID: 23852168
-
Burns MB, Temiz NA, Harris RS. Evidence for APOBEC3B mutagenesis in multiple human cancers. Nat Genet. 2013; 45(9):977-83. Epub 2013/07/16. doi: 10.1038/ng.2701 ng.2701 [pii]. PMID: 23852168.
-
(2013)
Nat Genet
, vol.45
, Issue.9
, pp. 977-983
-
-
Burns, M.B.1
Temiz, N.A.2
Harris, R.S.3
-
15
-
-
84883432724
-
An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers
-
PMID: 23852170; PubMed Central PMCID: PMC3789062
-
Roberts SA, Lawrence MS, Klimczak LJ, Grimm SA, Fargo D, Stojanov P, et al. An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers. Nat Genet. 2013; 45(9):970-6. doi: 10.1038/ng.2702 PMID: 23852170; PubMed Central PMCID: PMC3789062.
-
(2013)
Nat Genet
, vol.45
, Issue.9
, pp. 970-976
-
-
Roberts, S.A.1
Lawrence, M.S.2
Klimczak, L.J.3
Grimm, S.A.4
Fargo, D.5
Stojanov, P.6
-
16
-
-
77953035055
-
Interactions of host APOBEC3 restriction factors with HIV-1 in vivo: Implications for therapeutics
-
Epub 2010/01/26. PMID: 20096141; PubMed Central PMCID: PMC2860793
-
Albin JS, Harris RS. Interactions of host APOBEC3 restriction factors with HIV-1 in vivo: implications for therapeutics. Expert Rev Mol Med. 2010; 12:e4. Epub 2010/01/26. S1462399409001343 [pii] doi: 10.1017/S1462399409001343 PMID: 20096141; PubMed Central PMCID: PMC2860793.
-
(2010)
Expert Rev Mol Med
, vol.12
, pp. e4
-
-
Albin, J.S.1
Harris, R.S.2
-
17
-
-
84939942920
-
APOBECs and virus restriction
-
PMID: 25818029; PubMed Central PMCID: PMC4424171
-
Harris RS, Dudley JP. APOBECs and virus restriction. Virology. 2015;479-480C:131-45. doi: 10.1016/j.virol.2015.03.012 PMID: 25818029; PubMed Central PMCID: PMC4424171.
-
(2015)
Virology
, vol.479-480 C
, pp. 131-145
-
-
Harris, R.S.1
Dudley, J.P.2
-
18
-
-
84895784747
-
Mechanisms of base substitution mutagenesis in cancer genomes
-
PMID: 24705290; PubMed Central PMCID: PMC3978516
-
Bacolla A, Cooper DN, Vasquez KM. Mechanisms of base substitution mutagenesis in cancer genomes. Genes. 2014; 5(1):108-46. doi: 10.3390/genes5010108 PMID: 24705290; PubMed Central PMCID: PMC3978516.
-
(2014)
Genes
, vol.5
, Issue.1
, pp. 108-146
-
-
Bacolla, A.1
Cooper, D.N.2
Vasquez, K.M.3
-
19
-
-
84874624527
-
Subcellular localization of the APOBEC3 proteins during mitosis and implications for genomic DNA deamination
-
Epub 2013/02/08. 23713 [pii]. PMID: 23388464; PubMed Central PMCID: PMC3610724
-
Lackey L, Law EK, Brown WL, Harris RS. Subcellular localization of the APOBEC3 proteins during mitosis and implications for genomic DNA deamination. Cell Cycle. 2013; 12(5):762-72. Epub 2013/02/08. doi: 10.4161/cc.23713 23713 [pii]. PMID: 23388464; PubMed Central PMCID: PMC3610724.
-
(2013)
Cell Cycle
, vol.12
, Issue.5
, pp. 762-772
-
-
Lackey, L.1
Law, E.K.2
Brown, W.L.3
Harris, R.S.4
-
20
-
-
84891276148
-
APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma
-
Epub 2013/10/25. PMID: 24154874; PubMed Central PMCID: PMC3867573
-
Leonard B, Hart SN, Burns MB, Carpenter MA, Temiz NA, Rathore A, et al. APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma. Cancer Res. 2013; 73(24):7222-31. Epub 2013/10/25. doi: 10.1158/0008-5472.CAN-13-1753 PMID: 24154874; PubMed Central PMCID: PMC3867573.
-
(2013)
Cancer Res
, vol.73
, Issue.24
, pp. 7222-7231
-
-
Leonard, B.1
Hart, S.N.2
Burns, M.B.3
Carpenter, M.A.4
Temiz, N.A.5
Rathore, A.6
-
21
-
-
84879061509
-
DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis
-
Epub 2013/04/20. 00534 [pii]. PMID: 23599896; PubMed Central PMCID: PMC3628087
-
Taylor BJ, Nik-Zainal S, Wu YL, Stebbings LA, Raine K, Campbell PJ, et al. DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis. Elife. 2013; 2:e00534. Epub 2013/04/20. doi: 10.7554/eLife.00534 00534 [pii]. PMID: 23599896; PubMed Central PMCID: PMC3628087.
-
(2013)
Elife
, vol.2
-
-
Taylor, B.J.1
Nik-Zainal, S.2
Wu, Y.L.3
Stebbings, L.A.4
Raine, K.5
Campbell, P.J.6
-
22
-
-
84869159477
-
APOBEC3B can impair genomic stability by inducing base substitutions in genomic DNA in human cells
-
Epub 2012/11/15. PMID: 23150777; PubMed Central PMCID: PMC3496164
-
Shinohara M, Io K, Shindo K, Matsui M, Sakamoto T, Tada K, et al. APOBEC3B can impair genomic stability by inducing base substitutions in genomic DNA in human cells. Sci Rep. 2012; 2:806. Epub 2012/11/15. doi: 10.1038/srep00806 PMID: 23150777; PubMed Central PMCID: PMC3496164.
-
(2012)
Sci Rep
, vol.2
, pp. 806
-
-
Shinohara, M.1
Io, K.2
Shindo, K.3
Matsui, M.4
Sakamoto, T.5
Tada, K.6
-
23
-
-
84903390239
-
APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development
-
PMID: 24910434
-
Henderson S, Chakravarthy A, Su X, Boshoff C, Fenton TR. APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development. Cell Rep. 2014; 7(6):1833-41. doi: 10.1016/j.celrep.2014.05.012 PMID: 24910434.
-
(2014)
Cell Rep
, vol.7
, Issue.6
, pp. 1833-1841
-
-
Henderson, S.1
Chakravarthy, A.2
Su, X.3
Boshoff, C.4
Fenton, T.R.5
-
24
-
-
84907855592
-
Spatial and temporal diversity in genomic instability processes defines lung cancer evolution
-
PMID: 25301630
-
de Bruin EC, McGranahan N, Mitter R, Salm M, Wedge DC, Yates L, et al. Spatial and temporal diversity in genomic instability processes defines lung cancer evolution. Science. 2014; 346(6206):251-6. doi: 10.1126/science.1253462 PMID: 25301630.
-
(2014)
Science
, vol.346
, Issue.6206
, pp. 251-256
-
-
De Bruin, E.C.1
McGranahan, N.2
Mitter, R.3
Salm, M.4
Wedge, D.C.5
Yates, L.6
-
25
-
-
84939881660
-
Elevated APOBEC3B correlates with poor outcomes for estrogen-receptor-positive breast cancers
-
PMID: 25123150; PubMed Central PMCID: PMC4228172
-
Sieuwerts AM, Willis S, Burns MB, Look MP, Meijer-Van Gelder ME, Schlicker A, et al. Elevated APOBEC3B correlates with poor outcomes for estrogen-receptor-positive breast cancers. Hormones & cancer. 2014; 5(6):405-13. doi: 10.1007/s12672-014-0196-8 PMID: 25123150; PubMed Central PMCID: PMC4228172.
-
(2014)
Hormones & Cancer
, vol.5
, Issue.6
, pp. 405-413
-
-
Sieuwerts, A.M.1
Willis, S.2
Burns, M.B.3
Look, M.P.4
Meijer-Van Gelder, M.E.5
Schlicker, A.6
-
26
-
-
84924184255
-
APOBEC3B expression in breast cancer reflects cellular proliferation, while a deletion polymorphism is associated with immune activation
-
PMID: 25730878
-
Cescon DW, Haibe-Kains B, Mak TW. APOBEC3B expression in breast cancer reflects cellular proliferation, while a deletion polymorphism is associated with immune activation. Proc Natl Acad Sci U S A. 2015; 112(9):2841-6. doi: 10.1073/pnas.1424869112 PMID: 25730878.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, Issue.9
, pp. 2841-2846
-
-
Cescon, D.W.1
Haibe-Kains, B.2
Mak, T.W.3
-
27
-
-
84946605544
-
The PKC/NF-kappaB signaling pathway induces APOBEC3B expression in multiple human cancers
-
PMID: 26420215; PubMed Central PMCID: PMC4631676
-
Leonard B, McCann JL, Starrett GJ, Kosyakovsky L, Luengas EM, Molan AM, et al. The PKC/NF-kappaB signaling pathway induces APOBEC3B expression in multiple human cancers. Cancer Res. 2015; 75(21):4538-47. doi: 10.1158/0008-5472.CAN-15-2171-T PMID: 26420215; PubMed Central PMCID: PMC4631676.
-
(2015)
Cancer Res
, vol.75
, Issue.21
, pp. 4538-4547
-
-
Leonard, B.1
McCann, J.L.2
Starrett, G.J.3
Kosyakovsky, L.4
Luengas, E.M.5
Molan, A.M.6
-
28
-
-
84920969941
-
Human papillomavirus E6 triggers upregulation of the antiviral and cancer genomic DNA deaminase APOBEC3B
-
PMID: 25538195; PubMed Central PMCID: PMC4278539
-
Vieira VC, Leonard B, White EA, Starrett GJ, Temiz NA, Lorenz LD, et al. Human papillomavirus E6 triggers upregulation of the antiviral and cancer genomic DNA deaminase APOBEC3B. MBio. 2014; 5(6). doi: 10.1128/mBio.02234-14 PMID: 25538195; PubMed Central PMCID: PMC4278539.
-
(2014)
MBio
, vol.5
, Issue.6
-
-
Vieira, V.C.1
Leonard, B.2
White, E.A.3
Starrett, G.J.4
Temiz, N.A.5
Lorenz, L.D.6
-
29
-
-
84919459598
-
APOBEC3A functions as a restriction factor of human papillomavirus
-
PMID: 25355878; PubMed Central PMCID: PMC4301161
-
Warren CJ, Xu T, Guo K, Griffin LM, Westrich JA, Lee D, et al. APOBEC3A functions as a restriction factor of human papillomavirus. J Virol. 2015; 89(1):688-702. doi: 10.1128/JVI.02383-14 PMID: 25355878; PubMed Central PMCID: PMC4301161.
-
(2015)
J Virol
, vol.89
, Issue.1
, pp. 688-702
-
-
Warren, C.J.1
Xu, T.2
Guo, K.3
Griffin, L.M.4
Westrich, J.A.5
Lee, D.6
-
30
-
-
84937759881
-
Identification of APOBEC3B promoter elements responsible for activation by human papillomavirus type 16 E6
-
PMID: 25800874
-
Mori S, Takeuchi T, Ishii Y, Kukimoto I. Identification of APOBEC3B promoter elements responsible for activation by human papillomavirus type 16 E6. Biochem Biophys Res Commun. 2015; 460(3):555-60. doi: 10.1016/j.bbrc.2015.03.068 PMID: 25800874.
-
(2015)
Biochem Biophys Res Commun.
, vol.460
, Issue.3
, pp. 555-560
-
-
Mori, S.1
Takeuchi, T.2
Ishii, Y.3
Kukimoto, I.4
-
31
-
-
84943237337
-
APOBEC3B-mediated cytidine deamination is required for estrogen receptor action in breast cancer
-
PMID: 26411678; PubMed Central PMCID: PMC4597099
-
Periyasamy M, Patel H, Lai CF, Nguyen VT, Nevedomskaya E, Harrod A, et al. APOBEC3B-mediated cytidine deamination is required for estrogen receptor action in breast cancer. Cell Rep. 2015; 13 (1):108-21. doi: 10.1016/j.celrep.2015.08.066 PMID: 26411678; PubMed Central PMCID: PMC4597099.
-
(2015)
Cell Rep
, vol.13
, Issue.1
, pp. 108-121
-
-
Periyasamy, M.1
Patel, H.2
Lai, C.F.3
Nguyen, V.T.4
Nevedomskaya, E.5
Harrod, A.6
-
32
-
-
84950119770
-
Degradation of the cancer genomic DNA deaminase APOBEC3B by SIV Vif
-
PMID: 26544511
-
Land AM, Wang J, Law EK, Aberle R, Kirmaier A, Krupp A, et al. Degradation of the cancer genomic DNA deaminase APOBEC3B by SIV Vif. Oncotarget. 2015; 6(37):39969-79. doi: 10.18632/oncotarget.5483 PMID: 26544511.
-
(2015)
Oncotarget
, vol.6
, Issue.37
, pp. 39969-39979
-
-
Land, A.M.1
Wang, J.2
Law, E.K.3
Aberle, R.4
Kirmaier, A.5
Krupp, A.6
-
33
-
-
84867266936
-
Methylcytosine and normal cytosine deamination by the foreign DNA restriction enzyme APOBEC3A
-
Epub 2012/08/17. M112.385161 [pii]. PMID: 22896697; PubMed Central PMCID: PMC3464582
-
Carpenter MA, Li M, Rathore A, Lackey L, Law EK, Land AM, et al. Methylcytosine and normal cytosine deamination by the foreign DNA restriction enzyme APOBEC3A. J Biol Chem. 2012; 287(41):34801-8. Epub 2012/08/17. doi: 10.1074/jbc.M112.385161 M112.385161 [pii]. PMID: 22896697; PubMed Central PMCID: PMC3464582.
-
(2012)
J Biol Chem
, vol.287
, Issue.41
, pp. 34801-34808
-
-
Carpenter, M.A.1
Li, M.2
Rathore, A.3
Lackey, L.4
Law, E.K.5
Land, A.M.6
-
34
-
-
79953194132
-
Somatic hypermutation of human mitochondrial and nuclear DNA by APOBEC3 cytidine deaminases, a pathway for DNA catabolism
-
Epub 2011/03/04. 1009687108 [pii] PMID: 21368204; PubMed Central PMCID: PMC3064337
-
Suspène R, Aynaud MM, Guetard D, Henry M, Eckhoff G, Marchio A, et al. Somatic hypermutation of human mitochondrial and nuclear DNA by APOBEC3 cytidine deaminases, a pathway for DNA catabolism. Proc Natl Acad Sci U S A. 2011; 108(12):4858-63. Epub 2011/03/04. 1009687108 [pii] doi: 10.1073/pnas.1009687108 PMID: 21368204; PubMed Central PMCID: PMC3064337.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, Issue.12
, pp. 4858-4863
-
-
Suspène, R.1
Aynaud, M.M.2
Guetard, D.3
Henry, M.4
Eckhoff, G.5
Marchio, A.6
-
35
-
-
80054799330
-
Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity
-
PMID: 22023820; PubMed Central PMCID: PMC3333778
-
Rasmussen M, Sundstrom M, Goransson Kultima H, Botling J, Micke P, Birgisson H, et al. Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity. Genome Biol. 2011; 12(10):R108. doi: 10.1186/gb-2011-12-10-r108 PMID: 22023820; PubMed Central PMCID: PMC3333778.
-
(2011)
Genome Biol
, vol.12
, Issue.10
, pp. R108
-
-
Rasmussen, M.1
Sundstrom, M.2
Goransson Kultima, H.3
Botling, J.4
Micke, P.5
Birgisson, H.6
-
36
-
-
84947743770
-
SomaticSignatures: Inferring mutational signatures from single-nucleotide variants
-
PMID: 26163694
-
Gehring JS, Fischer B, Lawrence M, Huber W. SomaticSignatures: inferring mutational signatures from single-nucleotide variants. Bioinformatics. 2015; 31(22):3673-5. doi: 10.1093/bioinformatics/btv408 PMID: 26163694.
-
(2015)
Bioinformatics
, vol.31
, Issue.22
, pp. 3673-3675
-
-
Gehring, J.S.1
Fischer, B.2
Lawrence, M.3
Huber, W.4
-
37
-
-
84955592205
-
Mutational strand asymmetries in cancer genomes reveal mechanisms of DNA damage and repair
-
PMID: 26806129; PubMed Central PMCID: PMC4753048
-
Haradhvala NJ, Polak P, Stojanov P, Covington KR, Shinbrot E, Hess JM, et al. Mutational strand asymmetries in cancer genomes reveal mechanisms of DNA damage and repair. Cell. 2016; 164 (3):538-49. doi: 10.1016/j.cell.2015.12.050 PMID: 26806129; PubMed Central PMCID: PMC4753048.
-
(2016)
Cell
, vol.164
, Issue.3
, pp. 538-549
-
-
Haradhvala, N.J.1
Polak, P.2
Stojanov, P.3
Covington, K.R.4
Shinbrot, E.5
Hess, J.M.6
-
38
-
-
11444249832
-
Recovery of APOBEC3-edited human immunodeficiency virus G->A hypermutants by differential DNA denaturation PCR
-
PMID: 15604439
-
Suspène R, Henry M, Guillot S, Wain-Hobson S, Vartanian JP. Recovery of APOBEC3-edited human immunodeficiency virus G->A hypermutants by differential DNA denaturation PCR. J Gen Virol. 2005; 86(Pt 1):125-9. PMID: 15604439.
-
(2005)
J Gen Virol
, vol.86
, pp. 125-129
-
-
Suspène, R.1
Henry, M.2
Guillot, S.3
Wain-Hobson, S.4
Vartanian, J.P.5
-
39
-
-
76349094670
-
APOBEC3 proteins mediate the clearance of foreign DNA from human cells
-
PMID: 20062055
-
Stenglein MD, Burns MB, Li M, Lengyel J, Harris RS. APOBEC3 proteins mediate the clearance of foreign DNA from human cells. Nat Struct Mol Biol. 2010; 17(2):222-9. PMID: 20062055. doi: 10.1038/nsmb.1744
-
(2010)
Nat Struct Mol Biol
, vol.17
, Issue.2
, pp. 222-229
-
-
Stenglein, M.D.1
Burns, M.B.2
Li, M.3
Lengyel, J.4
Harris, R.S.5
-
40
-
-
39149099085
-
Two levels of protection for the B cell genome during somatic hypermutation
-
PMID: 18273020
-
Liu M, Duke JL, Richter DJ, Vinuesa CG, Goodnow CC, Kleinstein SH, et al. Two levels of protection for the B cell genome during somatic hypermutation. Nature. 2008; 451(7180):841-5. PMID: 18273020. doi: 10.1038/nature06547
-
(2008)
Nature
, vol.451
, Issue.7180
, pp. 841-845
-
-
Liu, M.1
Duke, J.L.2
Richter, D.J.3
Vinuesa, C.G.4
Goodnow, C.C.5
Kleinstein, S.H.6
-
41
-
-
18344375547
-
Mutation frequencies and AID activation state in B-cell lymphomas from Ung-deficient mice
-
PMID: 15735713
-
Nilsen H, An Q, Lindahl T. Mutation frequencies and AID activation state in B-cell lymphomas from Ung-deficient mice. Oncogene. 2005; 24(18):3063-6. doi: 10.1038/sj.onc.1208480 PMID: 15735713.
-
(2005)
Oncogene
, vol.24
, Issue.18
, pp. 3063-3066
-
-
Nilsen, H.1
An, Q.2
Lindahl, T.3
-
42
-
-
84882593001
-
Human APOBEC3A isoforms translocate to the nucleus and induce DNA double strand breaks leading to cell stress and death
-
PMID: 23977391; PubMed Central PMCID: PMC3748023
-
Mussil B, Suspene R, Aynaud MM, Gauvrit A, Vartanian JP, Wain-Hobson S. Human APOBEC3A isoforms translocate to the nucleus and induce DNA double strand breaks leading to cell stress and death. PloS one. 2013; 8(8):e73641. doi: 10.1371/journal.pone.0073641 PMID: 23977391; PubMed Central PMCID: PMC3748023.
-
(2013)
PloS One
, vol.8
, Issue.8
-
-
Mussil, B.1
Suspene, R.2
Aynaud, M.M.3
Gauvrit, A.4
Vartanian, J.P.5
Wain-Hobson, S.6
-
43
-
-
4644257592
-
AID is required for c-myc/IgH chromosome translocations in vivo
-
PMID: 15315756
-
Ramiro AR, Jankovic M, Eisenreich T, Difilippantonio S, Chen-Kiang S, Muramatsu M, et al. AID is required for c-myc/IgH chromosome translocations in vivo. Cell. 2004; 118(4):431-8. PMID: 15315756.
-
(2004)
Cell
, vol.118
, Issue.4
, pp. 431-438
-
-
Ramiro, A.R.1
Jankovic, M.2
Eisenreich, T.3
Difilippantonio, S.4
Chen-Kiang, S.5
Muramatsu, M.6
-
44
-
-
33745934925
-
Tissue-specific sensitivity to AID expression in transgenic mouse models
-
PMID: 16787714
-
Rucci F, Cattaneo L, Marrella V, Sacco MG, Sobacchi C, Lucchini F, et al. Tissue-specific sensitivity to AID expression in transgenic mouse models. Gene. 2006; 377:150-8. doi: 10.1016/j.gene.2006.03.024 PMID: 16787714.
-
(2006)
Gene
, vol.377
, pp. 150-158
-
-
Rucci, F.1
Cattaneo, L.2
Marrella, V.3
Sacco, M.G.4
Sobacchi, C.5
Lucchini, F.6
-
45
-
-
40949132893
-
Activation-induced cytidine deaminase links bile duct inflammation to human cholangiocarcinoma
-
PMID: 18306229
-
Komori J, Marusawa H, Machimoto T, Endo Y, Kinoshita K, Kou T, et al. Activation-induced cytidine deaminase links bile duct inflammation to human cholangiocarcinoma. Hepatology. 2008; 47(3):888-96. doi: 10.1002/hep.22125 PMID: 18306229.
-
(2008)
Hepatology
, vol.47
, Issue.3
, pp. 888-896
-
-
Komori, J.1
Marusawa, H.2
Machimoto, T.3
Endo, Y.4
Kinoshita, K.5
Kou, T.6
-
46
-
-
34147180434
-
Helicobacter pylori infection triggers aberrant expression of activation-induced cytidine deaminase in gastric epithelium
-
PMID: 17401375
-
Matsumoto Y, Marusawa H, Kinoshita K, Endo Y, Kou T, Morisawa T, et al. Helicobacter pylori infection triggers aberrant expression of activation-induced cytidine deaminase in gastric epithelium. Nat Med. 2007; 13(4):470-6. doi: 10.1038/nm1566 PMID: 17401375.
-
(2007)
Nat Med
, vol.13
, Issue.4
, pp. 470-476
-
-
Matsumoto, Y.1
Marusawa, H.2
Kinoshita, K.3
Endo, Y.4
Kou, T.5
Morisawa, T.6
-
47
-
-
84863229597
-
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
-
PMID: 22300766; PubMed Central PMCID: PMC3290792
-
Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res. 2012; 22(3):568-76. doi: 10.1101/gr.129684.111 PMID: 22300766; PubMed Central PMCID: PMC3290792.
-
(2012)
Genome Res
, vol.22
, Issue.3
, pp. 568-576
-
-
Koboldt, D.C.1
Zhang, Q.2
Larson, D.E.3
Shen, D.4
McLellan, M.D.5
Lin, L.6
-
48
-
-
84874025843
-
Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
-
PMID: 23396013; PubMed Central PMCID: PMC3833702
-
Cibulskis K, Lawrence MS, Carter SL, Sivachenko A, Jaffe D, Sougnez C, et al. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat Biotechnol. 2013; 31 (3):213-9. doi: 10.1038/nbt.2514 PMID: 23396013; PubMed Central PMCID: PMC3833702.
-
(2013)
Nat Biotechnol
, vol.31
, Issue.3
, pp. 213-219
-
-
Cibulskis, K.1
Lawrence, M.S.2
Carter, S.L.3
Sivachenko, A.4
Jaffe, D.5
Sougnez, C.6
-
49
-
-
34249790004
-
Molecular mechanisms of antibody somatic hypermutation
-
PMID: 17328676
-
Di Noia JM, Neuberger MS. Molecular mechanisms of antibody somatic hypermutation. Annu Rev Biochem. 2007; 76:1-22. PMID: 17328676.
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 1-22
-
-
Di Noia, J.M.1
Neuberger, M.S.2
-
50
-
-
84956649826
-
A panoply of errors: Polymerase proofreading domain mutations in cancer
-
PMID: 26822575
-
Rayner E, van Gool IC, Palles C, Kearsey SE, Bosse T, Tomlinson I, et al. A panoply of errors: polymerase proofreading domain mutations in cancer. Nature reviews. 2016; 16(2):71-81. doi: 10.1038/nrc.2015.12 PMID: 26822575.
-
(2016)
Nature Reviews
, vol.16
, Issue.2
, pp. 71-81
-
-
Rayner, E.1
Van Gool, I.C.2
Palles, C.3
Kearsey, S.E.4
Bosse, T.5
Tomlinson, I.6
-
51
-
-
77449130761
-
Microsatellite instability in colorectal cancer
-
PMID: 20420947; PubMed Central PMCID: PMC3037515
-
Boland CR, Goel A. Microsatellite instability in colorectal cancer. Gastroenterology. 2010; 138 (6):2073-87 e3. doi: 10.1053/j.gastro.2009.12.064 PMID: 20420947; PubMed Central PMCID: PMC3037515.
-
(2010)
Gastroenterology
, vol.138
, Issue.6
-
-
Boland, C.R.1
Goel, A.2
-
52
-
-
84924303574
-
Molecular mechanism and clinical impact of APOBEC3B-catalyzed mutagenesis in breast cancer
-
PMID: 25848704; PubMed Central PMCID: PMC4303225
-
Harris RS. Molecular mechanism and clinical impact of APOBEC3B-catalyzed mutagenesis in breast cancer. Breast Cancer Res. 2015; 17:8. doi: 10.1186/s13058-014-0498-3 PMID: 25848704; PubMed Central PMCID: PMC4303225.
-
(2015)
Breast Cancer Res
, vol.17
, pp. 8
-
-
Harris, R.S.1
-
53
-
-
84907364884
-
Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations
-
PMID: 25182477; PubMed Central PMCID: PMC4166678
-
Lin YC, Boone M, Meuris L, Lemmens I, Van Roy N, Soete A, et al. Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations. Nat Commun. 2014; 5:4767. doi: 10.1038/ncomms5767 PMID: 25182477; PubMed Central PMCID: PMC4166678.
-
(2014)
Nat Commun
, vol.5
, pp. 4767
-
-
Lin, Y.C.1
Boone, M.2
Meuris, L.3
Lemmens, I.4
Van Roy, N.5
Soete, A.6
-
54
-
-
84882414345
-
Stable expression of MutLgamma in human cells reveals no specific response to mismatched DNA, but distinct recruitment to damage sites
-
PMID: 23696135
-
Roesner LM, Mielke C, Fahnrich S, Merkhoffer Y, Dittmar KE, Drexler HG, et al. Stable expression of MutLgamma in human cells reveals no specific response to mismatched DNA, but distinct recruitment to damage sites. J Cell Biochem. 2013; 114(10):2405-14. doi: 10.1002/jcb.24591 PMID: 23696135.
-
(2013)
J Cell Biochem
, vol.114
, Issue.10
, pp. 2405-2414
-
-
Roesner, L.M.1
Mielke, C.2
Fahnrich, S.3
Merkhoffer, Y.4
Dittmar, K.E.5
Drexler, H.G.6
-
55
-
-
0036143918
-
Functional analysis of hMLH1 variants and HNPCC-related mutations using a human expression system
-
PMID: 11781295
-
Trojan J, Zeuzem S, Randolph A, Hemmerle C, Brieger A, Raedle J, et al. Functional analysis of hMLH1 variants and HNPCC-related mutations using a human expression system. Gastroenterology. 2002; 122(1):211-9. PMID: 11781295.
-
(2002)
Gastroenterology
, vol.122
, Issue.1
, pp. 211-219
-
-
Trojan, J.1
Zeuzem, S.2
Randolph, A.3
Hemmerle, C.4
Brieger, A.5
Raedle, J.6
-
56
-
-
84899645475
-
Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer
-
PMID: 24728294; PubMed Central PMCID: PMC4137149
-
Nik-Zainal S, Wedge DC, Alexandrov LB, Petljak M, Butler AP, Bolli N, et al. Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer. Nat Genet. 2014; 46(5):487-91. doi: 10.1038/ng.2955 PMID: 24728294; PubMed Central PMCID: PMC4137149.
-
(2014)
Nat Genet
, vol.46
, Issue.5
, pp. 487-491
-
-
Nik-Zainal, S.1
Wedge, D.C.2
Alexandrov, L.B.3
Petljak, M.4
Butler, A.P.5
Bolli, N.6
-
57
-
-
33644769083
-
APOBEC3A is a potent inhibitor of adeno-associated virus and retrotransposons
-
PMID: 16527742
-
Chen H, Lilley CE, Yu Q, Lee DV, Chou J, Narvaiza I, et al. APOBEC3A is a potent inhibitor of adeno-associated virus and retrotransposons. Curr Biol. 2006; 16(5):480-5. PMID: 16527742.
-
(2006)
Curr Biol
, vol.16
, Issue.5
, pp. 480-485
-
-
Chen, H.1
Lilley, C.E.2
Yu, Q.3
Lee, D.V.4
Chou, J.5
Narvaiza, I.6
-
58
-
-
77956261579
-
Innate immune signaling induces high levels of TC-specific deaminase activity in primary monocyte-derived cells through expression of APOBEC3A isoforms
-
Epub 2010/07/10. M110.102822 [pii] PMID: 20615867; PubMed Central PMCID: PMC2934643
-
Thielen BK, McNevin JP, McElrath MJ, Hunt BV, Klein KC, Lingappa JR. Innate immune signaling induces high levels of TC-specific deaminase activity in primary monocyte-derived cells through expression of APOBEC3A isoforms. J Biol Chem. 2010; 285(36):27753-66. Epub 2010/07/10. M110.102822 [pii] doi: 10.1074/jbc.M110.102822 PMID: 20615867; PubMed Central PMCID: PMC2934643.
-
(2010)
J Biol Chem
, vol.285
, Issue.36
, pp. 27753-27766
-
-
Thielen, B.K.1
McNevin, J.P.2
McElrath, M.J.3
Hunt, B.V.4
Klein, K.C.5
Lingappa, J.R.6
-
59
-
-
80055105950
-
Human and rhesus APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H demonstrate a conserved capacity to restrict Vif-deficient HIV-1
-
Epub 2011/08/13. JVI.05238-11 [pii] PMID: 21835787; PubMed Central PMCID: PMC3194973
-
Hultquist JF, Lengyel JA, Refsland EW, LaRue RS, Lackey L, Brown WL, et al. Human and rhesus APOBEC3D, APOBEC3F, APOBEC3G, and APOBEC3H demonstrate a conserved capacity to restrict Vif-deficient HIV-1. J Virol. 2011; 85(21):11220-34. Epub 2011/08/13. JVI.05238-11 [pii] doi: 10.1128/JVI.05238-11 PMID: 21835787; PubMed Central PMCID: PMC3194973.
-
(2011)
J Virol
, vol.85
, Issue.21
, pp. 11220-11234
-
-
Hultquist, J.F.1
Lengyel, J.A.2
Refsland, E.W.3
LaRue, R.S.4
Lackey, L.5
Brown, W.L.6
-
60
-
-
84869040744
-
Human Tribbles 3 protects nuclear DNA from cytidine deamination by APOBEC3A
-
Epub 2012/09/15. M112.372722 [pii]. PMID: 22977230; PubMed Central PMCID: PMC3493958
-
Aynaud MM, Suspene R, Vidalain PO, Mussil B, Guetard D, Tangy F, et al. Human Tribbles 3 protects nuclear DNA from cytidine deamination by APOBEC3A. J Biol Chem. 2012; 287(46):39182-92. Epub 2012/09/15. doi: 10.1074/jbc.M112.372722 M112.372722 [pii]. PMID: 22977230; PubMed Central PMCID: PMC3493958.
-
(2012)
J Biol Chem
, vol.287
, Issue.46
, pp. 39182-39192
-
-
Aynaud, M.M.1
Suspene, R.2
Vidalain, P.O.3
Mussil, B.4
Guetard, D.5
Tangy, F.6
-
61
-
-
84879052434
-
Endogenous APOBEC3A DNA cytosine deaminase is cytoplasmic and nongenotoxic
-
Epub 2013/05/04. M113.458661 [pii]. PMID: 23640892; PubMed Central PMCID: PMC3682529
-
Land AM, Law EK, Carpenter MA, Lackey L, Brown WL, Harris RS. Endogenous APOBEC3A DNA cytosine deaminase is cytoplasmic and nongenotoxic. J Biol Chem. 2013; 288(24):17253-60. Epub 2013/05/04. doi: 10.1074/jbc.M113.458661 M113.458661 [pii]. PMID: 23640892; PubMed Central PMCID: PMC3682529.
-
(2013)
J Biol Chem
, vol.288
, Issue.24
, pp. 17253-17260
-
-
Land, A.M.1
Law, E.K.2
Carpenter, M.A.3
Lackey, L.4
Brown, W.L.5
Harris, R.S.6
-
62
-
-
84887397458
-
Engineered proteins detect spontaneous DNA breakage in human and bacterial cells
-
PMID: 24171103; PubMed Central PMCID: PMC3809393
-
Shee C, Cox BD, Gu F, Luengas EM, Joshi MC, Chiu LY, et al. Engineered proteins detect spontaneous DNA breakage in human and bacterial cells. Elife. 2013; 2:e01222. doi: 10.7554/eLife.01222 PMID: 24171103; PubMed Central PMCID: PMC3809393.
-
(2013)
Elife
, vol.2
-
-
Shee, C.1
Cox, B.D.2
Gu, F.3
Luengas, E.M.4
Joshi, M.C.5
Chiu, L.Y.6
-
63
-
-
84940574759
-
An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers
-
PMID: 26258849
-
Chan K, Roberts SA, Klimczak LJ, Sterling JF, Saini N, Malc EP, et al. An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers. Nat Genet. 2015; 47(9):1067-72. doi: 10.1038/ng.3378 PMID: 26258849.
-
(2015)
Nat Genet
, vol.47
, Issue.9
, pp. 1067-1072
-
-
Chan, K.1
Roberts, S.A.2
Klimczak, L.J.3
Sterling, J.F.4
Saini, N.5
Malc, E.P.6
-
64
-
-
84923309215
-
A prevalent cancer susceptibility APOBEC3A hybrid allele bearing APOBEC3B 3′UTR enhances chromosomal DNA damage
-
PMID: 25298230
-
Caval V, Suspene R, Shapira M, Vartanian JP, Wain-Hobson S. A prevalent cancer susceptibility APOBEC3A hybrid allele bearing APOBEC3B 3′UTR enhances chromosomal DNA damage. Nat Commun. 2014; 5:5129. doi: 10.1038/ncomms6129 PMID: 25298230.
-
(2014)
Nat Commun
, vol.5
, pp. 5129
-
-
Caval, V.1
Suspene, R.2
Shapira, M.3
Vartanian, J.P.4
Wain-Hobson, S.5
|