-
1
-
-
33847359927
-
Establishing the triplet nature of the genetic code
-
Yanofsky C. Establishing the triplet nature of the genetic code. Cell 2007;128:815-8
-
(2007)
Cell
, vol.128
, pp. 815-818
-
-
Yanofsky, C.1
-
2
-
-
73949085491
-
Non-coding RNAs: regulators of disease
-
Taft RJ, Pang KC, Mercer TR, et al. Non-coding RNAs: regulators of disease. J Pathol 2010;220:126-39
-
(2010)
J Pathol
, vol.220
, pp. 126-139
-
-
Taft, R.J.1
Pang, K.C.2
Mercer, T.R.3
-
3
-
-
67649671961
-
Long noncoding RNAs: functional surprises from the RNA world
-
Wilusz JE, Sunwoo H, Spector DL. Long noncoding RNAs: functional surprises from the RNA world. Genes Dev 2009;23:1494-504
-
(2009)
Genes Dev
, vol.23
, pp. 1494-1504
-
-
Wilusz, J.E.1
Sunwoo, H.2
Spector, D.L.3
-
4
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 2008;322:1845-8
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
5
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
Bertone P, Stolc V, Royce TE, et al. Global identification of human transcribed sequences with genome tiling arrays. Science 2004;306:2242-6
-
(2004)
Science
, vol.306
, pp. 2242-2246
-
-
Bertone, P.1
Stolc, V.2
Royce, T.E.3
-
6
-
-
0000818999
-
General nature of the genetic code for proteins
-
Crick F, Barnett L, Brenner S, et al. General nature of the genetic code for proteins. Nature 1961;192:1227-32
-
(1961)
Nature
, vol.192
, pp. 1227-1232
-
-
Crick, F.1
Barnett, L.2
Brenner, S.3
-
7
-
-
84939517890
-
Role of lncRNAs in health and disease-size and shape matter
-
Mohanty V, Gökmen-Polar Y, Badve S, et al. Role of lncRNAs in health and disease-size and shape matter. Brief Funct Genomics 2015;14:115-29
-
(2015)
Brief Funct Genomics
, vol.14
, pp. 115-129
-
-
Mohanty, V.1
Gökmen-Polar, Y.2
Badve, S.3
-
8
-
-
84931281632
-
Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity
-
Chen X, Yan CC, Luo C, et al. Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity. Sci Rep 2015;5:11338
-
(2015)
Sci Rep
, vol.5
, pp. 11338
-
-
Chen, X.1
Yan, C.C.2
Luo, C.3
-
9
-
-
33847698971
-
The relationship between non-protein-coding DNA and eukaryotic complexity
-
Taft RJ, Pheasant M, Mattick JS. The relationship between non-protein-coding DNA and eukaryotic complexity. Bioessays 2007;29:288-99
-
(2007)
Bioessays
, vol.29
, pp. 288-299
-
-
Taft, R.J.1
Pheasant, M.2
Mattick, J.S.3
-
10
-
-
81355142141
-
Non-coding RNAs in human disease
-
Esteller M. Non-coding RNAs in human disease. Nat Rev Genetics 2011;12:861-74
-
(2011)
Nat Rev Genetics
, vol.12
, pp. 861-874
-
-
Esteller, M.1
-
11
-
-
84865760395
-
GENCODE: the reference human genome annotation for The ENCODE Project
-
Harrow J, Frankish A, Gonzalez JM, et al. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res 2012;22:1760-74
-
(2012)
Genome Res
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
-
12
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
-
Derrien T, Johnson R, Bussotti G, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res 2012;22:1775-89
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
-
13
-
-
84879969127
-
Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins
-
Guttman M, Russell P, Ingolia NT, et al. Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins. Cell 2013;154:240-51
-
(2013)
Cell
, vol.154
, pp. 240-251
-
-
Guttman, M.1
Russell, P.2
Ingolia, N.T.3
-
14
-
-
84927610522
-
Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications
-
Zhao W, Luo J, Jiao S. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. Sci Rep 2014;4:6591
-
(2014)
Sci Rep
, vol.4
, pp. 6591
-
-
Zhao, W.1
Luo, J.2
Jiao, S.3
-
15
-
-
84884837017
-
Computational prediction of associations between long non-coding RNAs and proteins
-
Lu Q, Ren S, Lu M, et al. Computational prediction of associations between long non-coding RNAs and proteins. BMC Genomics 2013;14:651
-
(2013)
BMC Genomics
, vol.14
, pp. 651
-
-
Lu, Q.1
Ren, S.2
Lu, M.3
-
16
-
-
84884191636
-
Long non-coding RNAs and complex human diseases
-
Li J, Xuan Z, Liu C. Long non-coding RNAs and complex human diseases. Int J Mol Sci 2013;14:18790-808
-
(2013)
Int J Mol Sci
, vol.14
, pp. 18790-18808
-
-
Li, J.1
Xuan, Z.2
Liu, C.3
-
17
-
-
0033429470
-
DD3: a new prostate-specific gene, highly overexpressed in prostate cancer
-
Bussemakers MJ, van Bokhoven A, Verhaegh GW, et al. DD3: a new prostate-specific gene, highly overexpressed in prostate cancer. Cancer Res 1999;59:5975-9
-
(1999)
Cancer Res
, vol.59
, pp. 5975-5979
-
-
Bussemakers, M.J.1
van Bokhoven, A.2
Verhaegh, G.W.3
-
18
-
-
84858798657
-
Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs
-
Managadze D, Rogozin IB, Chernikova D, et al. Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs. Genome Biol Evol 2011;3:1390-404
-
(2011)
Genome Biol Evol
, vol.3
, pp. 1390-1404
-
-
Managadze, D.1
Rogozin, I.B.2
Chernikova, D.3
-
19
-
-
84868705910
-
Long noncoding RNAs in cardiac development and pathophysiology
-
Schonrock N, Harvey RP, Mattick JS. Long noncoding RNAs in cardiac development and pathophysiology. Circ Res 2012;111:1349-62
-
(2012)
Circ Res
, vol.111
, pp. 1349-1362
-
-
Schonrock, N.1
Harvey, R.P.2
Mattick, J.S.3
-
20
-
-
84861491678
-
Conceptual approaches for lncRNA drug discovery and future strategies
-
Bhartiya D, Kapoor S, Jalali S, et al. Conceptual approaches for lncRNA drug discovery and future strategies. Expert Opin Drug Discov 2012;7:503-13
-
(2012)
Expert Opin Drug Discov
, vol.7
, pp. 503-513
-
-
Bhartiya, D.1
Kapoor, S.2
Jalali, S.3
-
21
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta RA, Shah N, Wang KC, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010;464:1071-6
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
-
22
-
-
78650200618
-
Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility
-
Chung S, Nakagawa H, Uemura M, et al. Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility. Cancer Sci 2011;102:245-52
-
(2011)
Cancer Sci
, vol.102
, pp. 245-252
-
-
Chung, S.1
Nakagawa, H.2
Uemura, M.3
-
23
-
-
84884673330
-
The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor
-
Cui Z, Ren S, Lu J, et al. The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor. Urol Oncol 2013;31:1117-23
-
(2013)
Urol Oncol
, vol.31
, pp. 1117-1123
-
-
Cui, Z.1
Ren, S.2
Lu, J.3
-
24
-
-
0036122682
-
Cloning of the mRNA of overexpression in colon carcinoma-1: a sequence overexpressed in a subset of colon carcinomas
-
Pibouin L, Villaudy J, Ferbus D, et al. Cloning of the mRNA of overexpression in colon carcinoma-1: a sequence overexpressed in a subset of colon carcinomas. Cancer Genet Cytogenet 2002;133:55-60
-
(2002)
Cancer Genet Cytogenet
, vol.133
, pp. 55-60
-
-
Pibouin, L.1
Villaudy, J.2
Ferbus, D.3
-
25
-
-
0345172377
-
A pituitary-derived MEG3 isoform functions as a growth suppressor in tumor cells
-
Zhang X, Zhou Y, Mehta KR, et al. A pituitary-derived MEG3 isoform functions as a growth suppressor in tumor cells. J Clin Endocrinol Metab 2003;88:5119-26
-
(2003)
J Clin Endocrinol Metab
, vol.88
, pp. 5119-5126
-
-
Zhang, X.1
Zhou, Y.2
Mehta, K.R.3
-
26
-
-
46749083733
-
Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of b-secretase
-
Faghihi MA, Modarresi F, Khalil AM, et al. Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of b-secretase. Nat Med 2008;14:723-30
-
(2008)
Nat Med
, vol.14
, pp. 723-730
-
-
Faghihi, M.A.1
Modarresi, F.2
Khalil, A.M.3
-
27
-
-
84855976300
-
Genetic variants at the 9p21 locus contribute to atherosclerosis through modulation of ANRIL and CDKN2A/B
-
Congrains A, Kamide K, Oguro R, et al. Genetic variants at the 9p21 locus contribute to atherosclerosis through modulation of ANRIL and CDKN2A/B. Atherosclerosis 2012;220:449-55
-
(2012)
Atherosclerosis
, vol.220
, pp. 449-455
-
-
Congrains, A.1
Kamide, K.2
Oguro, R.3
-
28
-
-
34548230885
-
Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas
-
Calin GA, Liu C-G, Ferracin M, et al. Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. Cancer Cell 2007;12:215-29
-
(2007)
Cancer Cell
, vol.12
, pp. 215-229
-
-
Calin, G.A.1
Liu, C.-G.2
Ferracin, M.3
-
29
-
-
79955544721
-
Functional characterization of the plasmacytoma variant translocation 1 gene (PVT1) in diabetic nephropathy
-
Alvarez ML, Di Stefano JK. Functional characterization of the plasmacytoma variant translocation 1 gene (PVT1) in diabetic nephropathy. PLoS One 2011;6:e18671
-
(2011)
PLoS One
, vol.6
-
-
Alvarez, M.L.1
Di Stefano, J.K.2
-
30
-
-
84874614275
-
NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression
-
Zhang Q, Chen C-Y, Yedavalli VS, et al. NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression. MBio 2013;4:e00596-12
-
(2013)
MBio
, vol.4
-
-
Zhang, Q.1
Chen, C.-Y.2
Yedavalli, V.S.3
-
31
-
-
84862777038
-
Long non-coding RNAs in Huntington's disease neurodegeneration
-
Johnson R. Long non-coding RNAs in Huntington's disease neurodegeneration. Neurobiol Dis 2012;46:245-54
-
(2012)
Neurobiol Dis
, vol.46
, pp. 245-254
-
-
Johnson, R.1
-
32
-
-
79955836034
-
Overexpression of long noncoding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation
-
Yang Z, Zhou L, Wu L-M, et al. Overexpression of long noncoding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation. Ann Surg Oncol 2011;18:1243-50
-
(2011)
Ann Surg Oncol
, vol.18
, pp. 1243-1250
-
-
Yang, Z.1
Zhou, L.2
Wu, L.-M.3
-
33
-
-
84855921304
-
The relationship between Prostate CAncer gene 3 (PCA3) and prostate cancer significance
-
van Poppel H, Haese A, Graefen M, et al. The relationship between Prostate CAncer gene 3 (PCA3) and prostate cancer significance. BJU Int 2012;109:360-6
-
(2012)
BJU Int
, vol.109
, pp. 360-366
-
-
van Poppel, H.1
Haese, A.2
Graefen, M.3
-
34
-
-
84867862596
-
Evaluation of novel gene UCA1 as a tumor biomarker for the detection of bladder cancer
-
Zhang Z, Hao H, Zhang C, et al. Evaluation of novel gene UCA1 as a tumor biomarker for the detection of bladder cancer. Zhonghua Yi Xue Za Zhi 2012;92:384-7
-
(2012)
Zhonghua Yi Xue Za Zhi
, vol.92
, pp. 384-387
-
-
Zhang, Z.1
Hao, H.2
Zhang, C.3
-
35
-
-
84885644151
-
Novel human lncRNA-disease association inference based on lncRNA expression profiles
-
Chen X, Yan G-Y. Novel human lncRNA-disease association inference based on lncRNA expression profiles. Bioinformatics 2013;29:2617-24
-
(2013)
Bioinformatics
, vol.29
, pp. 2617-2624
-
-
Chen, X.1
Yan, G.-Y.2
-
37
-
-
84946086288
-
An update on LNCipedia: a database for annotated human lncRNA sequences
-
Volders P-J, Verheggen K, Menschaert G, et al. An update on LNCipedia: a database for annotated human lncRNA sequences. Nucleic Acids Res 2015;43:4363-4
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 4363-4364
-
-
Volders, P.-J.1
Verheggen, K.2
Menschaert, G.3
-
38
-
-
84875530540
-
LNCipedia: a database for annotated human lncRNA transcript sequences and structures
-
Volders P-J, Helsens K, Wang X, et al. LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Res 2013;41:D246-51
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Volders, P.-J.1
Helsens, K.2
Wang, X.3
-
40
-
-
84877147615
-
Long noncoding RNA: an emerging paradigm of cancer research
-
Qiu M-T, Hu J-W, Yin R, et al. Long noncoding RNA: an emerging paradigm of cancer research. Tumor Biol 2013;34:613-20
-
(2013)
Tumor Biol
, vol.34
, pp. 613-620
-
-
Qiu, M.-T.1
Hu, J.-W.2
Yin, R.3
-
41
-
-
0025012640
-
The product of the H19 gene may function as an RNA
-
Brannan CI, Dees EC, Ingram RS, et al. The product of the H19 gene may function as an RNA. Mol Cell Biol 1990;10:28-36
-
(1990)
Mol Cell Biol
, vol.10
, pp. 28-36
-
-
Brannan, C.I.1
Dees, E.C.2
Ingram, R.S.3
-
42
-
-
0026489906
-
The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus
-
Brockdorff N, Ashworth A, Kay GF, et al. The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus. Cell 1992;71:515-26
-
(1992)
Cell
, vol.71
, pp. 515-526
-
-
Brockdorff, N.1
Ashworth, A.2
Kay, G.F.3
-
43
-
-
0026456701
-
The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus
-
Brown CJ, Hendrich BD, Rupert JL, et al. The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus. Cell 1992;71:527-42
-
(1992)
Cell
, vol.71
, pp. 527-542
-
-
Brown, C.J.1
Hendrich, B.D.2
Rupert, J.L.3
-
44
-
-
0027937839
-
Developmental control of allelic methylation in the imprinted mouse Igf2 and H19 genes
-
Feil R, Walter J, Allen ND, et al. Developmental control of allelic methylation in the imprinted mouse Igf2 and H19 genes. Development. 1994;120:2933-43
-
(1994)
Development
, vol.120
, pp. 2933-2943
-
-
Feil, R.1
Walter, J.2
Allen, N.D.3
-
45
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009;458:223-7
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
-
46
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili MN, Trapnell C, Goff L, et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 2011;25: 1915-27
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
-
47
-
-
84946013175
-
lncRNAdb v2. 0: expanding the reference database for functional long noncoding RNAs
-
Quek XC, Thomson DW, Maag JL, et al. lncRNAdb v2. 0: expanding the reference database for functional long noncoding RNAs. Nucleic Acids Res 2015;43:D168-73
-
(2015)
Nucleic Acids Res
, vol.43
-
-
Quek, X.C.1
Thomson, D.W.2
Maag, J.L.3
-
48
-
-
13444267841
-
NONCODE: an integrated knowledge database of non-coding RNAs
-
Liu C, Bai B, Skogerbø G, et al. NONCODE: an integrated knowledge database of non-coding RNAs. Nucleic Acids Res 2005;33:D112-5
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Liu, C.1
Bai, B.2
Skogerbø, G.3
-
50
-
-
84860742355
-
NONCODE v3. 0: integrative annotation of long noncoding RNAs
-
Bu D, Yu K, Sun S, et al. NONCODE v3. 0: integrative annotation of long noncoding RNAs. Nucleic Acids Res 2012;40:D210-5
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Bu, D.1
Yu, K.2
Sun, S.3
-
51
-
-
84891798006
-
NONCODEv4: exploring the world of long non-coding RNA genes
-
Xie C, Yuan J, Li H, et al. NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res 2014;42: D98-103
-
(2014)
Nucleic Acids Res
, vol.42
-
-
Xie, C.1
Yuan, J.2
Li, H.3
-
52
-
-
84976892806
-
NONCODE 2016: an informative and valuable data source of long non-coding RNAs
-
Zhao Y, Li H, Fang S, et al. NONCODE 2016: an informative and valuable data source of long non-coding RNAs. Nucleic Acids Res 2016;44:D203-8
-
(2016)
Nucleic Acids Res
, vol.44
-
-
Zhao, Y.1
Li, H.2
Fang, S.3
-
53
-
-
84876219082
-
PLncDB: plant long non-coding RNA database
-
Jin J, Liu J, Wang H, et al. PLncDB: plant long non-coding RNA database. Bioinformatics 2013;29:1068-71
-
(2013)
Bioinformatics
, vol.29
, pp. 1068-1071
-
-
Jin, J.1
Liu, J.2
Wang, H.3
-
54
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
Guttman M, Garber M, Levin JZ, et al. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat Biotechnol 2010;28:503-10
-
(2010)
Nat Biotechnol
, vol.28
, pp. 503-510
-
-
Guttman, M.1
Garber, M.2
Levin, J.Z.3
-
55
-
-
81055150443
-
Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer
-
Tahira AC, Kubrusly MS, Faria MF, et al. Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer. Mol Cancer 2011;10:1476-59
-
(2011)
Mol Cancer
, vol.10
, pp. 1476-1479
-
-
Tahira, A.C.1
Kubrusly, M.S.2
Faria, M.F.3
-
56
-
-
61849133411
-
Long intronic noncoding RNA transcription: expression noise or expression choice?
-
Louro R, Smirnova AS, Verjovski-Almeida S. Long intronic noncoding RNA transcription: expression noise or expression choice? Genomics 2009;93:291-8
-
(2009)
Genomics
, vol.93
, pp. 291-298
-
-
Louro, R.1
Smirnova, A.S.2
Verjovski-Almeida, S.3
-
57
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
Poliseno L, Salmena L, Zhang J, et al. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature 2010;465:1033-8
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
-
58
-
-
79961170994
-
A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
-
Salmena L, Poliseno L, Tay Y, et al. A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell 2011;146: 353-8
-
(2011)
Cell
, vol.146
, pp. 353-358
-
-
Salmena, L.1
Poliseno, L.2
Tay, Y.3
-
59
-
-
34948906343
-
antiCODE: a natural senseantisense transcripts database
-
Yin Y, Zhao Y, Wang J, et al. antiCODE: a natural senseantisense transcripts database. BMC Bioinformatics 2007; 8:319
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 319
-
-
Yin, Y.1
Zhao, Y.2
Wang, J.3
-
60
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama S, Tomaru Y, Kasukawa T, et al. Antisense transcription in the mammalian transcriptome. Science 2005;309:1564-6
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
-
62
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
Kapranov P, Cheng J, Dike S, et al. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 2007;316:1484-8
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
-
63
-
-
57849123049
-
RNA exosome depletion reveals transcription upstream of active human promoters
-
Preker P, Nielsen J, Kammler S, et al. RNA exosome depletion reveals transcription upstream of active human promoters. Science 2008;322:1851-4
-
(2008)
Science
, vol.322
, pp. 1851-1854
-
-
Preker, P.1
Nielsen, J.2
Kammler, S.3
-
64
-
-
0029030242
-
Cell stress and translational inhibitors transiently increase the abundance of mammalian SINE transcripts
-
Liu W-M, Chu W-M, Choudary PV, et al. Cell stress and translational inhibitors transiently increase the abundance of mammalian SINE transcripts. Nucleic Acids Res 1995;23: 1758-65
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1758-1765
-
-
Liu, W.-M.1
Chu, W.-M.2
Choudary, P.V.3
-
65
-
-
33947721021
-
Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription
-
Espinoza CA, Goodrich JA, Kugel JF. Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription. RNA 2007;13:583-96
-
(2007)
RNA
, vol.13
, pp. 583-596
-
-
Espinoza, C.A.1
Goodrich, J.A.2
Kugel, J.F.3
-
66
-
-
39549103642
-
Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock
-
Mariner PD, Walters RD, Espinoza CA, et al. Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock. Mol Cell 2008;29:499-509
-
(2008)
Mol Cell
, vol.29
, pp. 499-509
-
-
Mariner, P.D.1
Walters, R.D.2
Espinoza, C.A.3
-
67
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim T-K, Hemberg M, Gray JM, et al. Widespread transcription at neuronal activity-regulated enhancers. Nature 2010; 465:182-7
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.-K.1
Hemberg, M.2
Gray, J.M.3
-
68
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
Rinn JL, Chang HY. Genome regulation by long noncoding RNAs. Annu Rev Biochem 2012;81:145-66
-
(2012)
Annu Rev Biochem
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
69
-
-
60149099385
-
Evolution and functions of long noncoding RNAs
-
Ponting CP, Oliver PL, Reik W. Evolution and functions of long noncoding RNAs. Cell 2009;136:629-41
-
(2009)
Cell
, vol.136
, pp. 629-641
-
-
Ponting, C.P.1
Oliver, P.L.2
Reik, W.3
-
70
-
-
84870566023
-
Long noncoding RNAs in C. elegans
-
Nam J-W, Bartel DP. Long noncoding RNAs in C. elegans. Genome Res 2012;22:2529-40
-
(2012)
Genome Res
, vol.22
, pp. 2529-2540
-
-
Nam, J.-W.1
Bartel, D.P.2
-
71
-
-
78651390167
-
Long intergenic noncoding RNAs: new links in cancer progression
-
Tsai M-C, Spitale RC, Chang HY. Long intergenic noncoding RNAs: new links in cancer progression. Cancer Res 2011; 71:3-7
-
(2011)
Cancer Res
, vol.71
, pp. 3-7
-
-
Tsai, M.-C.1
Spitale, R.C.2
Chang, H.Y.3
-
72
-
-
84872779963
-
Molecular mechanisms and function prediction of long noncoding RNA
-
Ma H, Hao Y, Dong X, et al. Molecular mechanisms and function prediction of long noncoding RNA. Sci World J 2012; 2012:541786
-
(2012)
Sci World J
, vol.2012
-
-
Ma, H.1
Hao, Y.2
Dong, X.3
-
73
-
-
38649114329
-
Specific expression of long noncoding RNAs in the mouse brain
-
Mercer TR, Dinger ME, Sunkin SM, et al. Specific expression of long noncoding RNAs in the mouse brain. Proc Natl Acad Sci USA 2008;105:716-21
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 716-721
-
-
Mercer, T.R.1
Dinger, M.E.2
Sunkin, S.M.3
-
74
-
-
84857836107
-
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
-
Pauli A, Valen E, Lin MF, et al. Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis. Genome Res 2012;22:577-91
-
(2012)
Genome Res
, vol.22
, pp. 577-591
-
-
Pauli, A.1
Valen, E.2
Lin, M.F.3
-
75
-
-
84908318087
-
Genetic variation in the non-coding genome: involvement of micro-RNAs and long non-coding RNAs in disease
-
Hrdlickova B, de Almeida RC, Borek Z, et al. Genetic variation in the non-coding genome: involvement of micro-RNAs and long non-coding RNAs in disease. Biochim Biophys Acta 2014;1842:1910-22
-
(2014)
Biochim Biophys Acta
, vol.1842
, pp. 1910-1922
-
-
Hrdlickova, B.1
de Almeida, R.C.2
Borek, Z.3
-
76
-
-
84915735396
-
Identification of cancer-related lncRNAs through integrating genome, regulome and transcriptome features
-
Zhao T, Xu J, Liu L, et al. Identification of cancer-related lncRNAs through integrating genome, regulome and transcriptome features. Mol Biosyst 2015;11:126-36
-
(2015)
Mol Biosyst
, vol.11
, pp. 126-136
-
-
Zhao, T.1
Xu, J.2
Liu, L.3
-
77
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, et al. Initial sequencing and analysis of the human genome. Nature 2001;409:860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
78
-
-
77952581350
-
Long non-coding RNAs in nervous system function and disease
-
Qureshi IA, Mattick JS, Mehler MF. Long non-coding RNAs in nervous system function and disease. Brain Res 2010;1338:20-35
-
(2010)
Brain Res
, vol.1338
, pp. 20-35
-
-
Qureshi, I.A.1
Mattick, J.S.2
Mehler, M.F.3
-
79
-
-
79956010263
-
Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene coexpression network
-
Liao Q, Liu C, Yuan X, et al. Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene coexpression network. Nucleic Acids Res 2011;39:3864-78
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 3864-3878
-
-
Liao, Q.1
Liu, C.2
Yuan, X.3
-
80
-
-
84864927713
-
Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs
-
Moran VA, Perera RJ, Khalil AM. Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs. Nucleic Acids Res 2012;40:6391-400
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 6391-6400
-
-
Moran, V.A.1
Perera, R.J.2
Khalil, A.M.3
-
81
-
-
84884953564
-
Function of lncRNAs and approaches to lncRNA-protein interactions
-
Zhu J, Fu H, Wu Y, et al. Function of lncRNAs and approaches to lncRNA-protein interactions. Sci China Life Sci 2013;56:876-85
-
(2013)
Sci China Life Sci
, vol.56
, pp. 876-885
-
-
Zhu, J.1
Fu, H.2
Wu, Y.3
-
83
-
-
84919655098
-
lncRNAs: insights into their function and mechanics in underlying disorders
-
Li X, Wu Z, Fu X, et al. lncRNAs: insights into their function and mechanics in underlying disorders. Mutat Res/Rev Mutat Res 2014;762:1-21
-
(2014)
Mutat Res/Rev Mutat Res
, vol.762
, pp. 1-21
-
-
Li, X.1
Wu, Z.2
Fu, X.3
-
84
-
-
84873829893
-
The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse
-
Grote P, Wittler L, Hendrix D, et al. The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse. Dev Cell 2013;24:206-14
-
(2013)
Dev Cell
, vol.24
, pp. 206-214
-
-
Grote, P.1
Wittler, L.2
Hendrix, D.3
-
85
-
-
84886252113
-
RNA in unexpected places: long noncoding RNA functions in diverse cellular contexts
-
Geisler S, Coller J. RNA in unexpected places: long noncoding RNA functions in diverse cellular contexts. Nat Rev Mol Cell Biol 2013;14:699-712
-
(2013)
Nat Rev Mol Cell Biol
, vol.14
, pp. 699-712
-
-
Geisler, S.1
Coller, J.2
-
86
-
-
80054684399
-
Long non-coding RNA modifies chromatin
-
Saxena A, Carninci P. Long non-coding RNA modifies chromatin. Bioessays 2011;33:830-9
-
(2011)
Bioessays
, vol.33
, pp. 830-839
-
-
Saxena, A.1
Carninci, P.2
-
87
-
-
69249235745
-
Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome
-
Lee JT. Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome. Genes Dev 2009;23:1831-42
-
(2009)
Genes Dev
, vol.23
, pp. 1831-1842
-
-
Lee, J.T.1
-
88
-
-
54049138948
-
Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
-
Pandey RR, Mondal T, Mohammad F, et al. Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol Cell 2008;32:232-46
-
(2008)
Mol Cell
, vol.32
, pp. 232-246
-
-
Pandey, R.R.1
Mondal, T.2
Mohammad, F.3
-
89
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, Kertesz M, Wang JK, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007;129:1311-23
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
-
90
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatinmodifying complexes and affect gene expression
-
Khalil AM, Guttman M, Huarte M, et al. Many human large intergenic noncoding RNAs associate with chromatinmodifying complexes and affect gene expression. Proc Natl Acad Sci USA 2009;106:11667-72
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
-
91
-
-
56549111129
-
The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
Nagano T, Mitchell JA, Sanz LA, et al. The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 2008;322:1717-20
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
Mitchell, J.A.2
Sanz, L.A.3
-
92
-
-
55349100420
-
Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos
-
Terranova R, Yokobayashi S, Stadler MB, et al. Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos. Dev Cell 2008;15:668-79
-
(2008)
Dev Cell
, vol.15
, pp. 668-679
-
-
Terranova, R.1
Yokobayashi, S.2
Stadler, M.B.3
-
93
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai M-C, Manor O, Wan Y, et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010;329:689-93
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.-C.1
Manor, O.2
Wan, Y.3
-
94
-
-
9644281546
-
Imprinting along the Kcnq1 domain on mouse chromosome 7 involves repressive histone methylation and recruitment of Polycomb group complexes
-
Umlauf D, Goto Y, Cao R, et al. Imprinting along the Kcnq1 domain on mouse chromosome 7 involves repressive histone methylation and recruitment of Polycomb group complexes. Nat Genet 2004;36:1296-300
-
(2004)
Nat Genet
, vol.36
, pp. 1296-1300
-
-
Umlauf, D.1
Goto, Y.2
Cao, R.3
-
95
-
-
55349109963
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
-
Zhao J, Sun BK, Erwin JA, et al. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 2008;322:750-6
-
(2008)
Science
, vol.322
, pp. 750-756
-
-
Zhao, J.1
Sun, B.K.2
Erwin, J.A.3
-
96
-
-
78649807567
-
Phosphorylation of the PRC2 component Ezh2 is cell cycle-regulated and up-regulates its binding to ncRNA
-
Kaneko S, Li G, Son J, et al. Phosphorylation of the PRC2 component Ezh2 is cell cycle-regulated and up-regulates its binding to ncRNA. Genes Dev 2010;24:2615-20
-
(2010)
Genes Dev
, vol.24
, pp. 2615-2620
-
-
Kaneko, S.1
Li, G.2
Son, J.3
-
97
-
-
84867900638
-
Long non-coding RNAs and cancer: a new frontier of translational research& quest
-
Spizzo R, Almeida MI, Colombatti A, et al. Long non-coding RNAs and cancer: a new frontier of translational research& quest. Oncogene 2012;31:4577-87
-
(2012)
Oncogene
, vol.31
, pp. 4577-4587
-
-
Spizzo, R.1
Almeida, M.I.2
Colombatti, A.3
-
98
-
-
84879684791
-
Long noncoding RNAs and the genetics of cancer
-
Cheetham S, Gruhl F, Mattick J, et al. Long noncoding RNAs and the genetics of cancer. Br J Cancer 2013;108:2419-25
-
(2013)
Br J Cancer
, vol.108
, pp. 2419-2425
-
-
Cheetham, S.1
Gruhl, F.2
Mattick, J.3
-
99
-
-
84863495094
-
The hallmarks of cancer: a long non-coding RNA point of view
-
Gutschner T, Diederichs S. The hallmarks of cancer: a long non-coding RNA point of view. RNA Biol 2012;9:703-19
-
(2012)
RNA Biol
, vol.9
, pp. 703-719
-
-
Gutschner, T.1
Diederichs, S.2
-
100
-
-
65549155761
-
A transcriptional sketch of a primary human breast cancer by 454 deep sequencing
-
Guffanti A, Iacono M, Pelucchi P, et al. A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. BMC Genomics 2009;10:163
-
(2009)
BMC Genomics
, vol.10
, pp. 163
-
-
Guffanti, A.1
Iacono, M.2
Pelucchi, P.3
-
101
-
-
77956542998
-
CREB up-regulates long noncoding RNA, HULC expression through interaction with microRNA-372 in liver cancer
-
Wang J, Liu X, Wu H, et al. CREB up-regulates long noncoding RNA, HULC expression through interaction with microRNA-372 in liver cancer. Nucleic Acids Res 2010;38: 5366-83
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5366-5383
-
-
Wang, J.1
Liu, X.2
Wu, H.3
-
102
-
-
84861862859
-
The polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type
-
Jendrzejewski J, He H, Radomska HS, et al. The polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type. Proc Natl Acad Sci 2012;109:8646-51
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 8646-8651
-
-
Jendrzejewski, J.1
He, H.2
Radomska, H.S.3
-
103
-
-
0344429906
-
MALAT-1, a novel noncoding RNA, and thymosin b4 predict metastasis and survival in early-stage non-small cell lung cancer
-
Ji P, Diederichs S, Wang W, et al. MALAT-1, a novel noncoding RNA, and thymosin b4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene 2003;22: 8031-41
-
(2003)
Oncogene
, vol.22
, pp. 8031-8041
-
-
Ji, P.1
Diederichs, S.2
Wang, W.3
-
104
-
-
35348925443
-
Amplification of PVT1 contributes to the pathophysiology of ovarian and breast cancer
-
Guan Y, Kuo W-L, Stilwell JL, et al. Amplification of PVT1 contributes to the pathophysiology of ovarian and breast cancer. Clin Cancer Res 2007;13:5745-55
-
(2007)
Clin Cancer Res
, vol.13
, pp. 5745-5755
-
-
Guan, Y.1
Kuo, W.-L.2
Stilwell, J.L.3
-
105
-
-
79551623370
-
ANRIL, a long, noncoding RNA, is an unexpected major hotspot in GWAS
-
Pasmant E, Sabbagh A, Vidaud M, et al. ANRIL, a long, noncoding RNA, is an unexpected major hotspot in GWAS. FASEB J 2011;25:444-8
-
(2011)
FASEB J
, vol.25
, pp. 444-448
-
-
Pasmant, E.1
Sabbagh, A.2
Vidaud, M.3
-
106
-
-
84876125829
-
LncRNADisease: a database for long-non-coding RNA-associated diseases
-
Chen G, Wang Z, Wang D, et al. LncRNADisease: a database for long-non-coding RNA-associated diseases. Nucleic Acids Res 2013;41:D983-6
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Chen, G.1
Wang, Z.2
Wang, D.3
-
107
-
-
80055046798
-
Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans
-
Yang F, Zhang L, Huo XS, et al. Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans. Hepatology 2011;54:1679-89
-
(2011)
Hepatology
, vol.54
, pp. 1679-1689
-
-
Yang, F.1
Zhang, L.2
Huo, X.S.3
-
108
-
-
1842364970
-
Expression of neural BC200 RNA in human tumours
-
Chen W, Böcker W, Brosius J, et al. Expression of neural BC200 RNA in human tumours. J Pathol 1997;183:345-51
-
(1997)
J Pathol
, vol.183
, pp. 345-351
-
-
Chen, W.1
Böcker, W.2
Brosius, J.3
-
109
-
-
84884526059
-
Genomic approaches in breast cancer research
-
Donahue HJ, Genetos DC. Genomic approaches in breast cancer research. Brief Funct Genomics 2013;12:391-6
-
(2013)
Brief Funct Genomics
, vol.12
, pp. 391-396
-
-
Donahue, H.J.1
Genetos, D.C.2
-
110
-
-
84923167998
-
Triple negative breast cancer: a multi-omics network discovery strategy for candidate targets and driving pathways
-
Karagoz K, Sinha R, Arga KY. Triple negative breast cancer: a multi-omics network discovery strategy for candidate targets and driving pathways. Omics: A J Integr Biol 2015;19:115-30
-
(2015)
Omics: A J Integr Biol
, vol.19
, pp. 115-130
-
-
Karagoz, K.1
Sinha, R.2
Arga, K.Y.3
-
111
-
-
84965187681
-
A four-long non-coding RNA signature in predicting breast cancer survival
-
Meng J, Li P, Zhang Q, et al. A four-long non-coding RNA signature in predicting breast cancer survival. J Exp Clin Cancer Res 2014;33:84
-
(2014)
J Exp Clin Cancer Res
, vol.33
, pp. 84
-
-
Meng, J.1
Li, P.2
Zhang, Q.3
-
112
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
Wang KC, Chang HY. Molecular mechanisms of long noncoding RNAs. Mol Cell 2011;43:904-14
-
(2011)
Mol Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
113
-
-
33744912772
-
The c-Myc oncogene directly induces the H19 noncoding RNA by allelespecific binding to potentiate tumorigenesis
-
Barsyte-Lovejoy D, Lau SK, Boutros PC, et al. The c-Myc oncogene directly induces the H19 noncoding RNA by allelespecific binding to potentiate tumorigenesis. Cancer Res 2006;66:5330-7
-
(2006)
Cancer Res
, vol.66
, pp. 5330-5337
-
-
Barsyte-Lovejoy, D.1
Lau, S.K.2
Boutros, P.C.3
-
114
-
-
0036849920
-
Overexpression of an ectopic H19 gene enhances the tumorigenic properties of breast cancer cells
-
Lottin S, Adriaenssens E, Dupressoir T, et al. Overexpression of an ectopic H19 gene enhances the tumorigenic properties of breast cancer cells. Carcinogenesis 2002;23:1885-95
-
(2002)
Carcinogenesis
, vol.23
, pp. 1885-1895
-
-
Lottin, S.1
Adriaenssens, E.2
Dupressoir, T.3
-
115
-
-
1642453826
-
Mammary tumor induction in transgenic mice expressing an RNA-binding protein
-
Tessier CR, Doyle GA, Clark BA, et al. Mammary tumor induction in transgenic mice expressing an RNA-binding protein. Cancer Res 2004;64:209-14
-
(2004)
Cancer Res
, vol.64
, pp. 209-214
-
-
Tessier, C.R.1
Doyle, G.A.2
Clark, B.A.3
-
116
-
-
8844260368
-
BC200 RNA in invasive and preinvasive breast cancer
-
Iacoangeli A, Lin Y, Morley EJ, et al. BC200 RNA in invasive and preinvasive breast cancer. Carcinogenesis 2004;25:2125-33
-
(2004)
Carcinogenesis
, vol.25
, pp. 2125-2133
-
-
Iacoangeli, A.1
Lin, Y.2
Morley, E.J.3
-
117
-
-
34248547495
-
Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF
-
Pasmant E, Laurendeau I, Héron D, et al. Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF. Cancer Res 2007;67:3963-9
-
(2007)
Cancer Res
, vol.67
, pp. 3963-3969
-
-
Pasmant, E.1
Laurendeau, I.2
Héron, D.3
-
118
-
-
58249098615
-
GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer
-
Mourtada-Maarabouni M, Pickard M, Hedge V, et al. GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer. Oncogene 2009;28:195-208
-
(2009)
Oncogene
, vol.28
, pp. 195-208
-
-
Mourtada-Maarabouni, M.1
Pickard, M.2
Hedge, V.3
-
119
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte M, Guttman M, Feldser D, et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 2010;142:409-19
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
-
120
-
-
34347237644
-
X inactive-specific transcript RNA coating and genetic instability of the X chromosome in BRCA1 breast tumors
-
Vincent-Salomon A, Ganem-Elbaz C, Manié E, et al. X inactive-specific transcript RNA coating and genetic instability of the X chromosome in BRCA1 breast tumors. Cancer Res 2007;67:5134-40
-
(2007)
Cancer Res
, vol.67
, pp. 5134-5140
-
-
Vincent-Salomon, A.1
Ganem-Elbaz, C.2
Manié, E.3
-
121
-
-
79958187564
-
Estrogen-mediated epigenetic repression of the imprinted gene cyclin dependent kinase inhibitor 1C in breast cancer cells
-
Rodriguez BA, Weng Y-I, Liu T-M, et al. Estrogen-mediated epigenetic repression of the imprinted gene cyclin dependent kinase inhibitor 1C in breast cancer cells. Carcinogenesis 2011;32:812-21
-
(2011)
Carcinogenesis
, vol.32
, pp. 812-821
-
-
Rodriguez, B.A.1
Weng, Y.-I.2
Liu, T.-M.3
-
122
-
-
84879134668
-
Characterizing the genetic basis for nicotine induced cancer development: a transcriptome sequencing study
-
Bavarva JH, Tae H, Settlage RE, et al. Characterizing the genetic basis for nicotine induced cancer development: a transcriptome sequencing study. PLoS One 2013;8:e67252
-
(2013)
PLoS One
, vol.8
-
-
Bavarva, J.H.1
Tae, H.2
Settlage, R.E.3
-
123
-
-
84926251392
-
Molecular histology of lung cancer: from targets to treatments
-
Wood SL, Pernemalm M, Crosbie PA, et al. Molecular histology of lung cancer: from targets to treatments. Cancer Treat Rev 2015;41:361-75
-
(2015)
Cancer Treat Rev
, vol.41
, pp. 361-375
-
-
Wood, S.L.1
Pernemalm, M.2
Crosbie, P.A.3
-
124
-
-
84907915122
-
Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer
-
White NM, Cabanski CR, Silva-Fisher JM, et al. Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer. Genome Biol 2014;15:429
-
(2014)
Genome Biol
, vol.15
, pp. 429
-
-
White, N.M.1
Cabanski, C.R.2
Silva-Fisher, J.M.3
-
125
-
-
84870495530
-
Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events
-
Liu J, Lee W, Jiang Z, et al. Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events. Genome Res 2012;22:2315-27
-
(2012)
Genome Res
, vol.22
, pp. 2315-2327
-
-
Liu, J.1
Lee, W.2
Jiang, Z.3
-
126
-
-
84924975850
-
miRNA-dis: microRNA precursor identification based on distance structure status pairs
-
Liu B, Fang L, Chen J, et al. miRNA-dis: microRNA precursor identification based on distance structure status pairs. Mol Biosyst 2015;11:1194-204
-
(2015)
Mol Biosyst
, vol.11
, pp. 1194-1204
-
-
Liu, B.1
Fang, L.2
Chen, J.3
-
127
-
-
84931578769
-
A critical role for the long noncoding RNA GAS5 in proliferation and apoptosis in nonsmall-cell lung cancer
-
Shi X, Sun M, Liu H, et al. A critical role for the long noncoding RNA GAS5 in proliferation and apoptosis in nonsmall-cell lung cancer. Mol Carcinog 2013;54:E1-12
-
(2013)
Mol Carcinog
, vol.54
-
-
Shi, X.1
Sun, M.2
Liu, H.3
-
128
-
-
84893700911
-
Long noncoding RNAs: novel insights into hepatocelluar carcinoma
-
He Y, Meng X-M, Huang C, et al. Long noncoding RNAs: novel insights into hepatocelluar carcinoma. Cancer Lett 2014;344: 20-7
-
(2014)
Cancer Lett
, vol.344
, pp. 20-27
-
-
He, Y.1
Meng, X.-M.2
Huang, C.3
-
129
-
-
79952277505
-
The incidence and epidemiology of hepatocellular carcinoma: a global and regional perspective
-
Venook AP, Papandreou C, Furuse J, et al. The incidence and epidemiology of hepatocellular carcinoma: a global and regional perspective. Oncologist 2010;15:5-13
-
(2010)
Oncologist
, vol.15
, pp. 5-13
-
-
Venook, A.P.1
Papandreou, C.2
Furuse, J.3
-
130
-
-
84931570326
-
Application of hepatocellular carcinoma surveillance in a European setting. What can we learn from clinical practice?
-
Edenvik P, Davidsdottir L, Oksanen A, et al. Application of hepatocellular carcinoma surveillance in a European setting. What can we learn from clinical practice? Liver Int 2015;35:1862-71
-
(2015)
Liver Int
, vol.35
, pp. 1862-1871
-
-
Edenvik, P.1
Davidsdottir, L.2
Oksanen, A.3
-
131
-
-
84875931959
-
Screening for and surveillance of high-risk patients with HBV-related chronic liver disease: promoting the early detection of hepatocellular carcinoma in China
-
Song P, Feng X, Zhang K, et al. Screening for and surveillance of high-risk patients with HBV-related chronic liver disease: promoting the early detection of hepatocellular carcinoma in China. Biosci Trends 2013;7:1-6
-
(2013)
Biosci Trends
, vol.7
, pp. 1-6
-
-
Song, P.1
Feng, X.2
Zhang, K.3
-
132
-
-
84933051219
-
Estrogen suppresses hepatocellular carcinoma cells through ERb-mediated upregulation of the NLRP3 inflammasome
-
Wei Q, Guo P, Mu K, et al. Estrogen suppresses hepatocellular carcinoma cells through ERb-mediated upregulation of the NLRP3 inflammasome. Lab Invest 2015;95:804-16
-
(2015)
Lab Invest
, vol.95
, pp. 804-816
-
-
Wei, Q.1
Guo, P.2
Mu, K.3
-
133
-
-
84929132837
-
Increased risk of hepatocellular carcinoma in chronic hepatitis B patients with new onset diabetes: a nationwide cohort study
-
Fu SC, Huang YW, Wang TC, et al. Increased risk of hepatocellular carcinoma in chronic hepatitis B patients with new onset diabetes: a nationwide cohort study. Aliment Pharmacol Ther 2015;41:1200-9
-
(2015)
Aliment Pharmacol Ther
, vol.41
, pp. 1200-1209
-
-
Fu, S.C.1
Huang, Y.W.2
Wang, T.C.3
-
134
-
-
84874789694
-
Epigenetic activation of the MiR-200 family contributes to H19-mediated metastasis suppression in hepatocellular carcinoma
-
Zhang L, Yang F, Yuan J-H, et al. Epigenetic activation of the MiR-200 family contributes to H19-mediated metastasis suppression in hepatocellular carcinoma. Carcinogenesis 2012;34:577-86
-
(2012)
Carcinogenesis
, vol.34
, pp. 577-586
-
-
Zhang, L.1
Yang, F.2
Yuan, J.-H.3
-
135
-
-
84895788725
-
Characteristics of long noncoding RNA and its relation to hepatocellular carcinoma
-
Huang J-L, Zheng L, Hu Y-W. Characteristics of long noncoding RNA and its relation to hepatocellular carcinoma. Carcinogenesis 2013;35:507-14
-
(2013)
Carcinogenesis
, vol.35
, pp. 507-514
-
-
Huang, J.-L.1
Zheng, L.2
Hu, Y.-W.3
-
136
-
-
33846223294
-
Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA
-
Panzitt K, Tschernatsch MM, Guelly C, et al. Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA. Gastroenterology 2007;132:330-42
-
(2007)
Gastroenterology
, vol.132
, pp. 330-342
-
-
Panzitt, K.1
Tschernatsch, M.M.2
Guelly, C.3
-
137
-
-
84900316922
-
A long noncoding RNA activated by TGF-b promotes the invasion-metastasis cascade in hepatocellular carcinoma
-
Yuan J-H, Yang F, Wang F, et al. A long noncoding RNA activated by TGF-b promotes the invasion-metastasis cascade in hepatocellular carcinoma. Cancer Cell 2014;25:666-81
-
(2014)
Cancer Cell
, vol.25
, pp. 666-681
-
-
Yuan, J.-H.1
Yang, F.2
Wang, F.3
-
138
-
-
84875810883
-
Repression of the long noncoding RNA-LET by histone deacetylase 3 contributes to hypoxia-mediated metastasis
-
Yang F, Huo X-s, Yuan S-x, et al. Repression of the long noncoding RNA-LET by histone deacetylase 3 contributes to hypoxia-mediated metastasis. Mol Cell 2013;49:1083-96
-
(2013)
Mol Cell
, vol.49
, pp. 1083-1096
-
-
Yang, F.1
Huo, X.-S.2
Yuan, S.-X.3
-
139
-
-
84867888439
-
Decoding the non-coding RNAs in Alzheimer's disease
-
Schonrock N, Götz J. Decoding the non-coding RNAs in Alzheimer's disease. Cell Mol Life Sci 2012;69:3543-59
-
(2012)
Cell Mol Life Sci
, vol.69
, pp. 3543-3559
-
-
Schonrock, N.1
Götz, J.2
-
140
-
-
33750339228
-
A network dysfunction perspective on neurodegenerative diseases
-
Palop JJ, Chin J, Mucke L. A network dysfunction perspective on neurodegenerative diseases. Nature 2006;443:768-73
-
(2006)
Nature
, vol.443
, pp. 768-773
-
-
Palop, J.J.1
Chin, J.2
Mucke, L.3
-
141
-
-
84872501669
-
Non-coding RNAs in Alzheimer's disease
-
Tan L, Yu J-T, Hu N, et al. Non-coding RNAs in Alzheimer's disease. Mol Neurobiol 2013;47:382-93
-
(2013)
Mol Neurobiol
, vol.47
, pp. 382-393
-
-
Tan, L.1
Yu, J.-T.2
Hu, N.3
-
142
-
-
84880963657
-
Long noncoding RNAs in development and disease of the central nervous system
-
Ng S-Y, Lin L, Soh BS, et al. Long noncoding RNAs in development and disease of the central nervous system. Trends Genet 2013;29:461-8
-
(2013)
Trends Genet
, vol.29
, pp. 461-468
-
-
Ng, S.-Y.1
Lin, L.2
Soh, B.S.3
-
143
-
-
34547515964
-
Dendritic BC200 RNA in aging and in Alzheimer's disease
-
Mus E, Hof PR, Tiedge H. Dendritic BC200 RNA in aging and in Alzheimer's disease. Proc Natl Acad Sci USA 2007;104: 10679-84
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 10679-10684
-
-
Mus, E.1
Hof, P.R.2
Tiedge, H.3
-
144
-
-
84899619022
-
Transcriptome analysis reveals distinct patterns of long noncoding RNAs in heart and plasma of mice with heart failure
-
Li D, Chen G, Yang J, et al. Transcriptome analysis reveals distinct patterns of long noncoding RNAs in heart and plasma of mice with heart failure. PLoS One 2013;8:e77938
-
(2013)
PLoS One
, vol.8
-
-
Li, D.1
Chen, G.2
Yang, J.3
-
145
-
-
84855371938
-
Autoantibodies in heart failure and cardiac dysfunction
-
Kaya Z, Leib C, Katus HA. Autoantibodies in heart failure and cardiac dysfunction. Circ Res 2012;110:145-58
-
(2012)
Circ Res
, vol.110
, pp. 145-158
-
-
Kaya, Z.1
Leib, C.2
Katus, H.A.3
-
146
-
-
84859101565
-
Sex-related differences in patients' responses to heart failure therapy
-
Barsheshet A, Brenyo A, Goldenberg I, et al. Sex-related differences in patients' responses to heart failure therapy. Nat Rev Cardiol 2012;9:234-42
-
(2012)
Nat Rev Cardiol
, vol.9
, pp. 234-242
-
-
Barsheshet, A.1
Brenyo, A.2
Goldenberg, I.3
-
148
-
-
84900844231
-
Circulating long noncoding RNA, LIPCAR, predicts survival in patients with heart failure
-
Kumarswamy R, Bauters C, Volkmann I, et al. Circulating long noncoding RNA, LIPCAR, predicts survival in patients with heart failure. Circ Res 2014;114:1569-75
-
(2014)
Circ Res
, vol.114
, pp. 1569-1575
-
-
Kumarswamy, R.1
Bauters, C.2
Volkmann, I.3
-
150
-
-
17844397712
-
Hypermethylation of the promoter region is associated with the loss of MEG3 gene expression in human pituitary tumors
-
Zhao J, Dahle D, Zhou Y, et al. Hypermethylation of the promoter region is associated with the loss of MEG3 gene expression in human pituitary tumors. J Clin Endocrinol Metab 2005;90:2179-86
-
(2005)
J Clin Endocrinol Metab
, vol.90
, pp. 2179-2186
-
-
Zhao, J.1
Dahle, D.2
Zhou, Y.3
-
151
-
-
53749086981
-
Selective loss of MEG3 expression and intergenic differentially methylated region hypermethylation in the MEG3/DLK1 locus in human clinically nonfunctioning pituitary adenomas
-
Gejman R, Batista DL, Zhong Y, et al. Selective loss of MEG3 expression and intergenic differentially methylated region hypermethylation in the MEG3/DLK1 locus in human clinically nonfunctioning pituitary adenomas. J Clin Endocrinol Metab 2008;93:4119-25
-
(2008)
J Clin Endocrinol Metab
, vol.93
, pp. 4119-4125
-
-
Gejman, R.1
Batista, D.L.2
Zhong, Y.3
-
152
-
-
80053238905
-
Silencing of the imprinted DLK1-MEG3 locus in human clinically nonfunctioning pituitary adenomas
-
Cheunsuchon P, Zhou Y, Zhang X, et al. Silencing of the imprinted DLK1-MEG3 locus in human clinically nonfunctioning pituitary adenomas. Am J Pathol 2011;179:2120-30
-
(2011)
Am J Pathol
, vol.179
, pp. 2120-2130
-
-
Cheunsuchon, P.1
Zhou, Y.2
Zhang, X.3
-
153
-
-
73349115848
-
The imprinted DLK1-MEG3 gene region on chromosome 14q32. 2 alters susceptibility to type 1 diabetes
-
Wallace C, Smyth DJ, Maisuria-Armer M, et al. The imprinted DLK1-MEG3 gene region on chromosome 14q32. 2 alters susceptibility to type 1 diabetes. Nat Genet 2010;42:68-71
-
(2010)
Nat Genet
, vol.42
, pp. 68-71
-
-
Wallace, C.1
Smyth, D.J.2
Maisuria-Armer, M.3
-
154
-
-
84899519229
-
Long noncoding RNA in prostate, bladder, and kidney cancer
-
Martens-Uzunova ES, Böttcher R, Croce CM, et al. Long noncoding RNA in prostate, bladder, and kidney cancer. Eur Urol 2014;65:1140-51
-
(2014)
Eur Urol
, vol.65
, pp. 1140-1151
-
-
Martens-Uzunova, E.S.1
Böttcher, R.2
Croce, C.M.3
-
155
-
-
84897728220
-
LncRNA: a new player in 1a, 25 (OH) 2 vitamin D3/VDR protection against skin cancer formation
-
Jiang YJ, Bikle DD. LncRNA: a new player in 1a, 25 (OH) 2 vitamin D3/VDR protection against skin cancer formation. Exp Dermatol 2014;23:147-50
-
(2014)
Exp Dermatol
, vol.23
, pp. 147-150
-
-
Jiang, Y.J.1
Bikle, D.D.2
-
156
-
-
84876714385
-
Long non-coding RNA H19 increases bladder cancer metastasis by associating with EZH2 and inhibiting E-cadherin expression
-
Luo M, Li Z, Wang W, et al. Long non-coding RNA H19 increases bladder cancer metastasis by associating with EZH2 and inhibiting E-cadherin expression. Cancer Lett 2013;333:213-21
-
(2013)
Cancer Lett
, vol.333
, pp. 213-221
-
-
Luo, M.1
Li, Z.2
Wang, W.3
-
157
-
-
74349087120
-
H19 RNA downregulation stimulated melanogenesis in melasma
-
Kim NH, Lee CH, Lee AY. H19 RNA downregulation stimulated melanogenesis in melasma. Pigment Cell Melanoma Res 2010;23:84-92
-
(2010)
Pigment Cell Melanoma Res
, vol.23
, pp. 84-92
-
-
Kim, N.H.1
Lee, C.H.2
Lee, A.Y.3
-
158
-
-
84883755139
-
Long non-coding RNAs: a new frontier in the study of human diseases
-
Shi X, Sun M, Liu H, et al. Long non-coding RNAs: a new frontier in the study of human diseases. Cancer Lett 2013;339: 159-66
-
(2013)
Cancer Lett
, vol.339
, pp. 159-166
-
-
Shi, X.1
Sun, M.2
Liu, H.3
-
159
-
-
84865681472
-
Stratification of Wilms tumor by genetic and epigenetic analysis
-
Scott RH, Murray A, Baskcomb L, et al. Stratification of Wilms tumor by genetic and epigenetic analysis. Oncotarget 2012;3:327-35
-
(2012)
Oncotarget
, vol.3
, pp. 327-335
-
-
Scott, R.H.1
Murray, A.2
Baskcomb, L.3
-
160
-
-
0036182963
-
Epigenetic alterations of H19 and LIT1 distinguish patients with Beckwith-Wiedemann syndrome with cancer and birth defects
-
De Baun MR, Niemitz EL, Mc Neil DE, et al. Epigenetic alterations of H19 and LIT1 distinguish patients with Beckwith-Wiedemann syndrome with cancer and birth defects. Am J Hum Genet 2002;70:604-11
-
(2002)
Am J Hum Genet
, vol.70
, pp. 604-611
-
-
De Baun, M.R.1
Niemitz, E.L.2
Mc Neil, D.E.3
-
161
-
-
11144330666
-
The human H19 gene is frequently overexpressed in myometrium and stroma during pathological endometrial proliferative events
-
Lottin S, Adriaenssens E, Berteaux N, et al. The human H19 gene is frequently overexpressed in myometrium and stroma during pathological endometrial proliferative events. Eur J Cancer 2005;41:168-77
-
(2005)
Eur J Cancer
, vol.41
, pp. 168-177
-
-
Lottin, S.1
Adriaenssens, E.2
Berteaux, N.3
-
162
-
-
84879605330
-
Large noncoding RNA HOTAIR enhances aggressive biological behavior and is associated with short disease-free survival in human nonsmall cell lung cancer
-
Nakagawa T, Endo H, Yokoyama M, et al. Large noncoding RNA HOTAIR enhances aggressive biological behavior and is associated with short disease-free survival in human nonsmall cell lung cancer. Biochem Biophys Res Commun 2013;436:319-24
-
(2013)
Biochem Biophys Res Commun
, vol.436
, pp. 319-324
-
-
Nakagawa, T.1
Endo, H.2
Yokoyama, M.3
-
163
-
-
84555208731
-
Large intervening non-coding RNA HOTAIR is associated with hepatocellular carcinoma progression
-
Geng Y, Xie S, Li Q, et al. Large intervening non-coding RNA HOTAIR is associated with hepatocellular carcinoma progression. J Int Med Res 2011;39:2119-28
-
(2011)
J Int Med Res
, vol.39
, pp. 2119-2128
-
-
Geng, Y.1
Xie, S.2
Li, Q.3
-
164
-
-
84901707571
-
Role of the lncRNA-p53 regulatory network in cancer
-
Zhang A, Xu M, Mo Y-Y. Role of the lncRNA-p53 regulatory network in cancer. J Mol Cell Biol 2014;6:181-91
-
(2014)
J Mol Cell Biol
, vol.6
, pp. 181-191
-
-
Zhang, A.1
Xu, M.2
Mo, Y.-Y.3
-
165
-
-
84877609777
-
Induction of long intergenic non-coding RNA HOTAIR in lung cancer cells by type I collagen
-
Zhuang Y, Wang X, Nguyen HT, et al. Induction of long intergenic non-coding RNA HOTAIR in lung cancer cells by type I collagen. J Hematol Oncol 2013;6:35
-
(2013)
J Hematol Oncol
, vol.6
, pp. 35
-
-
Zhuang, Y.1
Wang, X.2
Nguyen, H.T.3
-
166
-
-
84863393119
-
Upregulation of miR-196a and HOTAIR drive malignant character in gastrointestinal stromal tumors
-
Niinuma T, Suzuki H, Nojima M, et al. Upregulation of miR-196a and HOTAIR drive malignant character in gastrointestinal stromal tumors. Cancer Res 2012;72:1126-36
-
(2012)
Cancer Res
, vol.72
, pp. 1126-1136
-
-
Niinuma, T.1
Suzuki, H.2
Nojima, M.3
-
167
-
-
84904015674
-
HOTAIR long non-coding RNA is a negative prognostic factor not only in primary tumors, but also in the blood of colorectal cancer patients
-
Svoboda M, Slyskova J, Schneiderova M, et al. HOTAIR long non-coding RNA is a negative prognostic factor not only in primary tumors, but also in the blood of colorectal cancer patients. Carcinogenesis 2014;35:1510-5
-
(2014)
Carcinogenesis
, vol.35
, pp. 1510-1515
-
-
Svoboda, M.1
Slyskova, J.2
Schneiderova, M.3
-
168
-
-
84899984643
-
Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331-3p in gastric cancer
-
Liu X, Sun M, Nie F, et al. Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331-3p in gastric cancer. Mol Cancer 2014; 13:92
-
(2014)
Mol Cancer
, vol.13
, pp. 92
-
-
Liu, X.1
Sun, M.2
Nie, F.3
-
169
-
-
84873451950
-
The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells
-
Gutschner T, Hämmerle M, Eißmann M, et al. The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Res 2013;73:1180-9
-
(2013)
Cancer Res
, vol.73
, pp. 1180-1189
-
-
Gutschner, T.1
Hämmerle, M.2
Eißmann, M.3
-
170
-
-
84873351133
-
The long non-coding RNAs, a new cancer diagnostic and therapeutic gold mine
-
Qi P, Du X. The long non-coding RNAs, a new cancer diagnostic and therapeutic gold mine. Mod Pathol 2013;26:155-65
-
(2013)
Mod Pathol
, vol.26
, pp. 155-165
-
-
Qi, P.1
Du, X.2
-
171
-
-
84864691867
-
Upregulated MALAT-1 contributes to bladder cancer cell migration by inducing epithelialto-mesenchymal transition
-
Ying L, Chen Q, Wang Y, et al. Upregulated MALAT-1 contributes to bladder cancer cell migration by inducing epithelialto-mesenchymal transition. Mol Biosyst 2012;8:2289-94
-
(2012)
Mol Biosyst
, vol.8
, pp. 2289-2294
-
-
Ying, L.1
Chen, Q.2
Wang, Y.3
-
172
-
-
84865581182
-
Emerging roles of noncoding RNAs in pancreatic b-cell function and dysfunction
-
Guay C, Jacovetti C, Nesca V, et al. Emerging roles of noncoding RNAs in pancreatic b-cell function and dysfunction. Diabetes Obes Metab 2012;14:12-21
-
(2012)
Diabetes Obes Metab
, vol.14
, pp. 12-21
-
-
Guay, C.1
Jacovetti, C.2
Nesca, V.3
-
173
-
-
85088546912
-
lymphomas with retroviral inserts in the chromosomal 15 locus for plasmacytoma variant translocations
-
Graham M, Adams JM, Cory S, Murine T. lymphomas with retroviral inserts in the chromosomal 15 locus for plasmacytoma variant translocations. EMBO J 1985;4:675-81
-
(1985)
EMBO J
, vol.4
, pp. 675-681
-
-
Graham, M.1
Adams, J.M.2
Cory, S.3
Murine, T.4
-
175
-
-
84941100252
-
LncRNAWiki: harnessing community knowledge in collaborative curation of human long noncoding RNAs
-
Ma L, Li A, Zou D, et al. LncRNAWiki: harnessing community knowledge in collaborative curation of human long noncoding RNAs. Nucleic Acids Res 2014;43:D187-92
-
(2014)
Nucleic Acids Res
, vol.43
-
-
Ma, L.1
Li, A.2
Zou, D.3
-
176
-
-
84976883041
-
Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers
-
Ning S, Zhang J, Wang P, et al. Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers. Nucleic Acids Res 2016;44: D980-5
-
(2016)
Nucleic Acids Res
, vol.44
-
-
Ning, S.1
Zhang, J.2
Wang, P.3
-
177
-
-
84941141442
-
LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression
-
Jiang Q, Wang J, Wu X, et al. LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression. Nucleic Acids Res 2015;43:D193-6
-
(2015)
Nucleic Acids Res
, vol.43
-
-
Jiang, Q.1
Wang, J.2
Wu, X.3
-
178
-
-
84876523096
-
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs
-
Paraskevopoulou MD, Georgakilas G, Kostoulas N, et al. DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. Nucleic Acids Res 2013;41:D239-45
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Paraskevopoulou, M.D.1
Georgakilas, G.2
Kostoulas, N.3
-
179
-
-
84907212706
-
LncRBase: an enriched resource for lncRNA information
-
Chakraborty S, Deb A, Maji RK, et al. LncRBase: an enriched resource for lncRNA information. PloS One 2014;9:e108010
-
(2014)
PloS One
, vol.9
-
-
Chakraborty, S.1
Deb, A.2
Maji, R.K.3
-
180
-
-
84885912472
-
lncRNome: a comprehensive knowledgebase of human long noncoding RNAs
-
Bhartiya D, Pal K, Ghosh S, et al. lncRNome: a comprehensive knowledgebase of human long noncoding RNAs. Database 2013;2013:bat034
-
(2013)
Database
, vol.2013
-
-
Bhartiya, D.1
Pal, K.2
Ghosh, S.3
-
182
-
-
84905027964
-
SNP@ lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites
-
Ning S, Zhao Z, Ye J, et al. SNP@ lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites. PloS One 2014;9:e103851
-
(2014)
PloS One
, vol.9
-
-
Ning, S.1
Zhao, Z.2
Ye, J.3
-
183
-
-
84946065958
-
lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse
-
Gong J, Liu W, Zhang J, et al. lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse. Nucleic Acids Res 2015;43:D181-6
-
(2015)
Nucleic Acids Res
, vol.43
-
-
Gong, J.1
Liu, W.2
Zhang, J.3
-
184
-
-
84905650933
-
A bioinformatics method for predicting long noncoding RNAs associated with vascular disease
-
Li J, Gao C, Wang Y, et al. A bioinformatics method for predicting long noncoding RNAs associated with vascular disease. Sci China Life Sci 2014;57:852-7
-
(2014)
Sci China Life Sci
, vol.57
, pp. 852-857
-
-
Li, J.1
Gao, C.2
Wang, Y.3
-
185
-
-
84882735784
-
Mammalian ncRNA-disease repository: a global view of ncRNA-mediated disease network
-
Wang Y, Chen L, Chen B, et al. Mammalian ncRNA-disease repository: a global view of ncRNA-mediated disease network. Cell Death Dis 2013;4:e765
-
(2013)
Cell Death Dis
, vol.4
-
-
Wang, Y.1
Chen, L.2
Chen, B.3
-
186
-
-
84941783888
-
LncTar: a tool for predicting the RNA targets of long noncoding RNAs
-
Li J, Ma W, Zeng P, et al. LncTar: a tool for predicting the RNA targets of long noncoding RNAs. Brief Bioinformatics 2015;16:806-12
-
(2015)
Brief Bioinformatics
, vol.16
, pp. 806-812
-
-
Li, J.1
Ma, W.2
Zeng, P.3
-
188
-
-
84988368964
-
Computational recognition for long non-coding RNA (lncRNA): software and databases
-
Yotsukura S, Hancock T, Natsume-Kitatani Y, et al. Computational recognition for long non-coding RNA (lncRNA): software and databases. Brief Bioinformatics 2016;bbv114
-
(2016)
Brief Bioinformatics
-
-
Yotsukura, S.1
Hancock, T.2
Natsume-Kitatani, Y.3
-
189
-
-
84865295522
-
Prediction of disease-related interactions between MicroRNAs and environmental factors based on a semi-supervised classifier
-
Chen X, Liu MX, Cui QH, et al. Prediction of disease-related interactions between MicroRNAs and environmental factors based on a semi-supervised classifier. PLoS One 2012;7:e43425
-
(2012)
PLoS One
, vol.7
-
-
Chen, X.1
Liu, M.X.2
Cui, Q.H.3
-
190
-
-
84865786695
-
RWRMDA: predicting novel human microRNA-disease associations
-
Chen X, Liu MX, Yan G. RWRMDA: predicting novel human microRNA-disease associations. Mol Biosyst 2012;8:2792-8
-
(2012)
Mol Biosyst
, vol.8
, pp. 2792-2798
-
-
Chen, X.1
Liu, M.X.2
Yan, G.3
-
191
-
-
84941123718
-
RBMMMDA: predicting multiple types of disease-microRNA associations
-
Chen X, Yan CC, Zhang X, et al. RBMMMDA: predicting multiple types of disease-microRNA associations. Sci Rep 2015;5:13877
-
(2015)
Sci Rep
, vol.5
, pp. 13877
-
-
Chen, X.1
Yan, C.C.2
Zhang, X.3
-
192
-
-
84903650418
-
Semi-supervised learning for potential human microRNA-disease associations inference
-
Chen X, Yan G-Y. Semi-supervised learning for potential human microRNA-disease associations inference. Sci Rep 2014;4:5501
-
(2014)
Sci Rep
, vol.4
, pp. 5501
-
-
Chen, X.1
Yan, G.-Y.2
-
193
-
-
77956047866
-
A novel candidate disease genes prioritization method based on module partition and rank fusion
-
Chen X, Yan GY, Liao XP. A novel candidate disease genes prioritization method based on module partition and rank fusion. OMICS: J Integr Biol 2010;14:337-56
-
(2010)
OMICS: J Integr Biol
, vol.14
, pp. 337-356
-
-
Chen, X.1
Yan, G.Y.2
Liao, X.P.3
-
194
-
-
84961325932
-
miREFRWR: a novel disease-related microRNA-environmental factor interactions prediction method
-
Chen X. miREFRWR: a novel disease-related microRNA-environmental factor interactions prediction method. Mol Biosyst 2016;12:624-33
-
(2016)
Mol Biosyst
, vol.12
, pp. 624-633
-
-
Chen, X.1
-
195
-
-
84958291994
-
WBSMDA: within and between score for MiRNA-disease association prediction
-
Chen X, Yan CC, Zhang X, et al. WBSMDA: within and between score for MiRNA-disease association prediction. Sci Rep 2016;6:21106
-
(2016)
Sci Rep
, vol.6
, pp. 21106
-
-
Chen, X.1
Yan, C.C.2
Zhang, X.3
-
196
-
-
84967109506
-
ILNCSIM: improved lncRNA functional similarity calculation model
-
Huang Y, Chen X, You Z, et al. ILNCSIM: improved lncRNA functional similarity calculation model. Oncotarget 2016;7:25902-14
-
(2016)
Oncotarget
, vol.7
, pp. 25902-25914
-
-
Huang, Y.1
Chen, X.2
You, Z.3
-
197
-
-
84903751248
-
Inferring novel lncRNA-disease associations based on a random walk model of a lncRNA functional similarity network
-
Sun J, Shi H, Wang Z, et al. Inferring novel lncRNA-disease associations based on a random walk model of a lncRNA functional similarity network. Mol Biosyst 2014;10:2074-81
-
(2014)
Mol Biosyst
, vol.10
, pp. 2074-2081
-
-
Sun, J.1
Shi, H.2
Wang, Z.3
-
198
-
-
84921630879
-
Construction of a lncRNA-PCG bipartite network and identification of cancer-related lncRNAs: a case study in prostate cancer
-
Liu Y, Zhang R, Qiu F, et al. Construction of a lncRNA-PCG bipartite network and identification of cancer-related lncRNAs: a case study in prostate cancer. Mol Biosyst 2015;11:384-93
-
(2015)
Mol Biosyst
, vol.11
, pp. 384-393
-
-
Liu, Y.1
Zhang, R.2
Qiu, F.3
-
199
-
-
84923347799
-
Prioritizing candidate diseaserelated long non-coding RNAs by walking on the heterogeneous lncRNA and disease network
-
Zhou M, Wang X, Li J, et al. Prioritizing candidate diseaserelated long non-coding RNAs by walking on the heterogeneous lncRNA and disease network. Mol Biosyst 2015;11: 760-9
-
(2015)
Mol Biosyst
, vol.11
, pp. 760-769
-
-
Zhou, M.1
Wang, X.2
Li, J.3
-
200
-
-
84928014306
-
Heterogeneous network model to infer human disease-long intergenic non-coding RNA associations
-
Ganegoda GU, Li M, Wang W, et al. Heterogeneous network model to infer human disease-long intergenic non-coding RNA associations. IEEE Trans Nanobiosci 2015;14:175-83
-
(2015)
IEEE Trans Nanobiosci
, vol.14
, pp. 175-183
-
-
Ganegoda, G.U.1
Li, M.2
Wang, W.3
-
201
-
-
84947272475
-
KATZLDA: KATZ measure for the lncRNA-disease association prediction
-
Chen X. KATZLDA: KATZ measure for the lncRNA-disease association prediction. Sci Rep 2015;5:16840
-
(2015)
Sci Rep
, vol.5
, pp. 16840
-
-
Chen, X.1
-
202
-
-
84900457632
-
A network based method for analysis of lncRNA-disease associations and prediction of lncRNAs implicated in diseases
-
Yang X, Gao L, Guo X, et al. A network based method for analysis of lncRNA-disease associations and prediction of lncRNAs implicated in diseases. PLoS One 2014;9:e87797
-
(2014)
PLoS One
, vol.9
-
-
Yang, X.1
Gao, L.2
Guo, X.3
-
203
-
-
84894258048
-
A computational framework to infer human disease-associated long noncoding RNAs
-
Liu M-X, Chen X, Chen G, et al. A computational framework to infer human disease-associated long noncoding RNAs. PLoS One 2014;9:e84408
-
(2014)
PLoS One
, vol.9
-
-
Liu, M.-X.1
Chen, X.2
Chen, G.3
-
204
-
-
84939498768
-
Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA
-
Chen X. Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA. Sci Rep 2015;5:13186
-
(2015)
Sci Rep
, vol.5
, pp. 13186
-
-
Chen, X.1
-
205
-
-
84891883037
-
Amplification of PVT-1 is involved in poor prognosis via apoptosis inhibition in colorectal cancers
-
Takahashi Y, Sawada G, Kurashige J, et al. Amplification of PVT-1 is involved in poor prognosis via apoptosis inhibition in colorectal cancers. Br J Cancer 2014;110:164-71
-
(2014)
Br J Cancer
, vol.110
, pp. 164-171
-
-
Takahashi, Y.1
Sawada, G.2
Kurashige, J.3
-
206
-
-
0035016707
-
Loss of imprinting of long QT intronic transcript 1 in colorectal cancer
-
Tanaka K, Shiota G, Meguro M, et al. Loss of imprinting of long QT intronic transcript 1 in colorectal cancer. Oncology 2000;60:268-73
-
(2000)
Oncology
, vol.60
, pp. 268-273
-
-
Tanaka, K.1
Shiota, G.2
Meguro, M.3
-
207
-
-
84940707585
-
Upregulated lncRNAUCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma
-
Wang H-M, Lu J-H, Chen W-Y, et al. Upregulated lncRNAUCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma. Int J Clin Exp Med 2015;8:11824-30
-
(2015)
Int J Clin Exp Med
, vol.8
, pp. 11824-11830
-
-
Wang, H.-M.1
Lu, J.-H.2
Chen, W.-Y.3
-
208
-
-
78249258719
-
MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes
-
Tano K, Mizuno R, Okada T, et al. MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes. FEBS Lett 2010;584: 4575-80
-
(2010)
FEBS Lett
, vol.584
, pp. 4575-4580
-
-
Tano, K.1
Mizuno, R.2
Okada, T.3
-
209
-
-
84907960468
-
P53-regulated long non-coding RNA TUG1 affects cell proliferation in human non-small cell lung cancer, partly through epigenetically regulating HOXB7 expression
-
Zhang E, Yin D, Sun M, et al. P53-regulated long non-coding RNA TUG1 affects cell proliferation in human non-small cell lung cancer, partly through epigenetically regulating HOXB7 expression. Cell Death Dis 2014;5:e1243
-
(2014)
Cell Death Dis
, vol.5
-
-
Zhang, E.1
Yin, D.2
Sun, M.3
-
210
-
-
84939777837
-
Tumor hypoxia induces nuclear paraspeckle formation through HIF-2a dependent transcriptional activation of NEAT1 leading to cancer cell survival
-
Choudhry H, Albukhari M, Morotti A, et al. Tumor hypoxia induces nuclear paraspeckle formation through HIF-2a dependent transcriptional activation of NEAT1 leading to cancer cell survival, Oncogene 2014;34:4546
-
(2014)
Oncogene
, vol.34
, pp. 4546
-
-
Choudhry, H.1
Albukhari, M.2
Morotti, A.3
-
211
-
-
84920938274
-
Long non-coding RNAs: emerging players in gastric cancer, tumor
-
Guo X, Xia J, Deng K. Long non-coding RNAs: emerging players in gastric cancer, tumor. Biology 2014;35:10591-600
-
(2014)
Biology
, vol.35
, pp. 10591-10600
-
-
Guo, X.1
Xia, J.2
Deng, K.3
-
212
-
-
84905118394
-
MALAT1 promotes cell proliferation in gastric cancer by recruiting SF2/ASF
-
Wang J, Su L, Chen X, et al. MALAT1 promotes cell proliferation in gastric cancer by recruiting SF2/ASF. Biomed Pharmacother 2014;68:557-64
-
(2014)
Biomed Pharmacother
, vol.68
, pp. 557-564
-
-
Wang, J.1
Su, L.2
Chen, X.3
-
213
-
-
84941702202
-
Computational approaches towards understanding human long noncoding RNA biology
-
Jalali S, Kapoor S, Sivadas A, et al. Computational approaches towards understanding human long noncoding RNA biology. Bioinformatics 2015;31:2241-51
-
(2015)
Bioinformatics
, vol.31
, pp. 2241-2251
-
-
Jalali, S.1
Kapoor, S.2
Sivadas, A.3
-
214
-
-
79957840356
-
Long noncoding RNAs and human disease
-
Wapinski O, Chang HY. Long noncoding RNAs and human disease. Trends Cell Biol 2011;21:354-61
-
(2011)
Trends Cell Biol
, vol.21
, pp. 354-361
-
-
Wapinski, O.1
Chang, H.Y.2
-
215
-
-
84870805181
-
Flaws in evaluation schemes for pairinput computational predictions
-
Park Y, Marcotte EM. Flaws in evaluation schemes for pairinput computational predictions. Nat Methods 2012;9:1134-6
-
(2012)
Nat Methods
, vol.9
, pp. 1134-1136
-
-
Park, Y.1
Marcotte, E.M.2
|