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Volumn 1842, Issue 10, 2014, Pages 1910-1922

Genetic variation in the non-coding genome: Involvement of micro-RNAs and long non-coding RNAs in disease

Author keywords

Genetic variant; Human disease; LncRNA; MiRNA; NcRNA; SNP

Indexed keywords

LONG UNTRANSLATED RNA; MICRORNA; UNTRANSLATED RNA;

EID: 84908318087     PISSN: 09254439     EISSN: 1879260X     Source Type: Journal    
DOI: 10.1016/j.bbadis.2014.03.011     Document Type: Review
Times cited : (203)

References (193)
  • 2
    • 79960279940 scopus 로고    scopus 로고
    • Promise and pitfalls of the Immunochip
    • Cortes A., Brown M.A. Promise and pitfalls of the Immunochip. Arthritis Res. Ther. 2011, 13:101.
    • (2011) Arthritis Res. Ther. , vol.13 , pp. 101
    • Cortes, A.1    Brown, M.A.2
  • 3
    • 84865693681 scopus 로고    scopus 로고
    • The metabochip, a custom genotyping array for genetic studies of metabolic, cardiovascular, and anthropometric traits
    • Voight B.F., Kang H.M., Ding J., Palmer C.D., Sidore C., Chines P.S., et al. The metabochip, a custom genotyping array for genetic studies of metabolic, cardiovascular, and anthropometric traits. PLoS Genet. 2012, 8:e1002793.
    • (2012) PLoS Genet. , vol.8 , pp. e1002793
    • Voight, B.F.1    Kang, H.M.2    Ding, J.3    Palmer, C.D.4    Sidore, C.5    Chines, P.S.6
  • 4
    • 77953808087 scopus 로고    scopus 로고
    • Genotype imputation for genome-wide association studies
    • Marchini J., Howie B. Genotype imputation for genome-wide association studies. Nat. Rev. Genet. 2010, 11:499-511.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 499-511
    • Marchini, J.1    Howie, B.2
  • 8
    • 84865822182 scopus 로고    scopus 로고
    • Systematic localization of common disease-associated variation in regulatory DNA
    • (80)
    • Variation D., Maurano M.T., Humbert R., Rynes E., Thurman R.E., Haugen E., et al. Systematic localization of common disease-associated variation in regulatory DNA. Science 2012, 337:1190-1195. (80).
    • (2012) Science , vol.337 , pp. 1190-1195
    • Variation, D.1    Maurano, M.T.2    Humbert, R.3    Rynes, E.4    Thurman, R.E.5    Haugen, E.6
  • 10
    • 84873489136 scopus 로고    scopus 로고
    • Human disease-associated genetic variation impacts large intergenic non-coding RNA expression
    • Kumar V., Westra H.-J., Karjalainen J., Zhernakova D.V., Esko T., Hrdlickova B., et al. Human disease-associated genetic variation impacts large intergenic non-coding RNA expression. PLoS Genet. 2012, 9:e1003201.
    • (2012) PLoS Genet. , vol.9 , pp. e1003201
    • Kumar, V.1    Westra, H.-J.2    Karjalainen, J.3    Zhernakova, D.V.4    Esko, T.5    Hrdlickova, B.6
  • 11
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee R.C., Feinbaum R.L., Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993, 75:843-854.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 12
    • 0034597777 scopus 로고    scopus 로고
    • Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA
    • Pasquinelli A.E., Reinhart B.J., Slack F., Martindale M.Q., Kuroda M.I., Maller B., et al. Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature 2000, 408:86-89.
    • (2000) Nature , vol.408 , pp. 86-89
    • Pasquinelli, A.E.1    Reinhart, B.J.2    Slack, F.3    Martindale, M.Q.4    Kuroda, M.I.5    Maller, B.6
  • 13
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: integrating microRNA annotation and deep-sequencing data
    • Kozomara A., Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 2011, 39:D152-D157.
    • (2011) Nucleic Acids Res. , vol.39 , pp. D152-D157
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 14
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis B.P., Burge C.B., Bartel D.P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120:15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 16
    • 81355142141 scopus 로고    scopus 로고
    • Non-coding RNAs in human disease
    • Esteller M. Non-coding RNAs in human disease. Nat. Rev. Genet. 2011, 12:861-874.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 861-874
    • Esteller, M.1
  • 17
    • 33749528151 scopus 로고    scopus 로고
    • MiRNAs and apoptosis: RNAs to die for
    • Jovanovic M., Hengartner M.O. miRNAs and apoptosis: RNAs to die for. Oncogene 2006, 25:6176-6187.
    • (2006) Oncogene , vol.25 , pp. 6176-6187
    • Jovanovic, M.1    Hengartner, M.O.2
  • 18
    • 50549095181 scopus 로고    scopus 로고
    • Let-7 microRNAs in development, stem cells and cancer
    • Büssing I., Slack F.J., Grosshans H. let-7 microRNAs in development, stem cells and cancer. Trends Mol. Med. 2008, 14:400-409.
    • (2008) Trends Mol. Med. , vol.14 , pp. 400-409
    • Büssing, I.1    Slack, F.J.2    Grosshans, H.3
  • 19
    • 53549097349 scopus 로고    scopus 로고
    • MicroRNAs: key players in the immune system, differentiation, tumorigenesis and cell death
    • Schickel R., Boyerinas B., Park S.-M., Peter M.E. MicroRNAs: key players in the immune system, differentiation, tumorigenesis and cell death. Oncogene 2008, 27:5959-5974.
    • (2008) Oncogene , vol.27 , pp. 5959-5974
    • Schickel, R.1    Boyerinas, B.2    Park, S.-M.3    Peter, M.E.4
  • 20
    • 39749110083 scopus 로고    scopus 로고
    • Small non-coding RNAs in animal development
    • Stefani G., Slack F.J. Small non-coding RNAs in animal development. Nat. Rev. Mol. Cell Biol. 2008, 9:219-230.
    • (2008) Nat. Rev. Mol. Cell Biol. , vol.9 , pp. 219-230
    • Stefani, G.1    Slack, F.J.2
  • 22
    • 84858446579 scopus 로고    scopus 로고
    • MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship
    • Pasquinelli A.E. MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship. Nat. Rev. Genet. 2012, 13:271-282.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 271-282
    • Pasquinelli, A.E.1
  • 23
    • 77955902024 scopus 로고    scopus 로고
    • The widespread regulation of microRNA biogenesis, function and decay
    • Krol J., Loedige I., Filipowicz W. The widespread regulation of microRNA biogenesis, function and decay. Nat. Rev. Genet. 2010, 11:597-610.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 597-610
    • Krol, J.1    Loedige, I.2    Filipowicz, W.3
  • 24
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNA target recognition and regulatory functions
    • Bartel D.P. MicroRNA target recognition and regulatory functions. Cell 2009, 136:215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 26
    • 81355123438 scopus 로고    scopus 로고
    • Evolution of microRNA diversity and regulation in animals
    • Berezikov E. Evolution of microRNA diversity and regulation in animals. Nat. Rev. Genet. 2011, 12:846-860.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 846-860
    • Berezikov, E.1
  • 27
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman R.C., Farh K.K., Burge C.B., Bartel D.P. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 2009, 19:92-105.
    • (2009) Genome Res. , vol.19 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.2    Burge, C.B.3    Bartel, D.P.4
  • 29
    • 77954096083 scopus 로고    scopus 로고
    • Individual microRNAs (miRNAs) display distinct mRNA targeting "rules"
    • Wang W., Wilfred B.R., Xie K., Jennings M.H., Hu Y., Arnold J., et al. Individual microRNAs (miRNAs) display distinct mRNA targeting "rules". RNA Biol. 2010, 7:373-380.
    • (2010) RNA Biol. , vol.7 , pp. 373-380
    • Wang, W.1    Wilfred, B.R.2    Xie, K.3    Jennings, M.H.4    Hu, Y.5    Arnold, J.6
  • 31
    • 79953301730 scopus 로고    scopus 로고
    • MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins
    • Vickers K.C., Palmisano B.T., Shoucri B.M., Shamburek R.D., Remaley A.T. MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins. Nat. Cell Biol. 2011, 13:423-433.
    • (2011) Nat. Cell Biol. , vol.13 , pp. 423-433
    • Vickers, K.C.1    Palmisano, B.T.2    Shoucri, B.M.3    Shamburek, R.D.4    Remaley, A.T.5
  • 32
    • 69949110770 scopus 로고    scopus 로고
    • Salivary microRNA: discovery, characterization, and clinical utility for oral cancer detection
    • Park N.J., Zhou H., Elashoff D., Henson B.S., Kastratovic D.A., Abemayor E., et al. Salivary microRNA: discovery, characterization, and clinical utility for oral cancer detection. Clin. Cancer Res. 2009, 15:5473-5477.
    • (2009) Clin. Cancer Res. , vol.15 , pp. 5473-5477
    • Park, N.J.1    Zhou, H.2    Elashoff, D.3    Henson, B.S.4    Kastratovic, D.A.5    Abemayor, E.6
  • 33
    • 84871695724 scopus 로고    scopus 로고
    • MicroRNA (miRNA) speciation in Alzheimer's disease (AD) cerebrospinal fluid (CSF) and extracellular fluid (ECF)
    • Alexandrov P.N., Dua P., Hill J.M., Bhattacharjee S., Zhao Y., Walter J. MicroRNA (miRNA) speciation in Alzheimer's disease (AD) cerebrospinal fluid (CSF) and extracellular fluid (ECF). Int. J. Biochem. Mol. Biol. 2012, 3:365-373.
    • (2012) Int. J. Biochem. Mol. Biol. , vol.3 , pp. 365-373
    • Alexandrov, P.N.1    Dua, P.2    Hill, J.M.3    Bhattacharjee, S.4    Zhao, Y.5    Walter, J.6
  • 34
    • 78149408296 scopus 로고    scopus 로고
    • A robust methodology to study urine microRNA as tumor marker: microRNA-126 and microRNA-182 are related to urinary bladder cancer
    • Hanke M., Hoefig K., Merz H., Feller A.C., Kausch I., Jocham D., et al. A robust methodology to study urine microRNA as tumor marker: microRNA-126 and microRNA-182 are related to urinary bladder cancer. Urol. Oncol. 2010, 28:655-661.
    • (2010) Urol. Oncol. , vol.28 , pp. 655-661
    • Hanke, M.1    Hoefig, K.2    Merz, H.3    Feller, A.C.4    Kausch, I.5    Jocham, D.6
  • 36
    • 77953721053 scopus 로고    scopus 로고
    • MicroRNA-29a regulates intestinal membrane permeability in patients with irritable bowel syndrome
    • Zhou Q., Souba W.W., Croce C.M., Verne G.N. MicroRNA-29a regulates intestinal membrane permeability in patients with irritable bowel syndrome. Gut 2010, 59:775-784.
    • (2010) Gut , vol.59 , pp. 775-784
    • Zhou, Q.1    Souba, W.W.2    Croce, C.M.3    Verne, G.N.4
  • 37
    • 84864886471 scopus 로고    scopus 로고
    • Immune deficiency and autoimmunity
    • Atkinson T.P. Immune deficiency and autoimmunity. Curr. Opin. Rheumatol. 2012, 24:515-521.
    • (2012) Curr. Opin. Rheumatol. , vol.24 , pp. 515-521
    • Atkinson, T.P.1
  • 38
  • 39
    • 77957940475 scopus 로고    scopus 로고
    • A genetic defect in exportin-5 traps precursor microRNAs in the nucleus of cancer cells
    • Melo S.A., Moutinho C., Ropero S., Calin G.A., Rossi S., Spizzo R., et al. A genetic defect in exportin-5 traps precursor microRNAs in the nucleus of cancer cells. Cancer Cell 2010, 18:303-315.
    • (2010) Cancer Cell , vol.18 , pp. 303-315
    • Melo, S.A.1    Moutinho, C.2    Ropero, S.3    Calin, G.A.4    Rossi, S.5    Spizzo, R.6
  • 41
    • 84860408968 scopus 로고    scopus 로고
    • DNA methylation-associated silencing of tumor-suppressor microRNAs in cancer
    • Lopez-Serra P., Esteller M. DNA methylation-associated silencing of tumor-suppressor microRNAs in cancer. Oncogene 2012, 31:1609-1622.
    • (2012) Oncogene , vol.31 , pp. 1609-1622
    • Lopez-Serra, P.1    Esteller, M.2
  • 42
    • 84859911725 scopus 로고    scopus 로고
    • Dynamic epigenetic regulation of the microRNA-200 family mediates epithelial and mesenchymal transitions in human tumorigenesis
    • Davalos V., Moutinho C., Villanueva A., Boque R., Silva P., Carneiro F., et al. Dynamic epigenetic regulation of the microRNA-200 family mediates epithelial and mesenchymal transitions in human tumorigenesis. Oncogene 2012, 31:2062-2074.
    • (2012) Oncogene , vol.31 , pp. 2062-2074
    • Davalos, V.1    Moutinho, C.2    Villanueva, A.3    Boque, R.4    Silva, P.5    Carneiro, F.6
  • 43
    • 84879747965 scopus 로고    scopus 로고
    • MicroRNA-138 and SIRT1 form a mutual negative feedback loop to regulate mammalian axon regeneration
    • Liu C.-M., Wang R.-Y., Saijilafu Z.-X.Jiao, Zhang B.-Y., Zhou F.-Q. MicroRNA-138 and SIRT1 form a mutual negative feedback loop to regulate mammalian axon regeneration. Genes Dev. 2013, 27:1473-1483.
    • (2013) Genes Dev. , vol.27 , pp. 1473-1483
    • Liu, C.-M.1    Wang, R.-Y.2    Saijilafu, Z.-X.J.3    Zhang, B.-Y.4    Zhou, F.-Q.5
  • 44
    • 18744396337 scopus 로고    scopus 로고
    • Frequent deletions and down-regulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia
    • Calin G.A., Dumitru C.D., Shimizu M., Bichi R., Zupo S., Noch E., et al. Frequent deletions and down-regulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia. Proc. Natl. Acad. Sci. U. S. A. 2002, 99:15524-15529.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 15524-15529
    • Calin, G.A.1    Dumitru, C.D.2    Shimizu, M.3    Bichi, R.4    Zupo, S.5    Noch, E.6
  • 45
    • 84877153828 scopus 로고    scopus 로고
    • Genetic variations in micro-RNA biogenesis genes and clinical outcomes in non-muscle-invasive bladder cancer
    • Ke H.-L., Chen M., Ye Y., Hildebrandt M.a T., Wu W.-J., Wei H., et al. Genetic variations in micro-RNA biogenesis genes and clinical outcomes in non-muscle-invasive bladder cancer. Carcinogenesis 2013, 34:1006-1011.
    • (2013) Carcinogenesis , vol.34 , pp. 1006-1011
    • Ke, H.-L.1    Chen, M.2    Ye, Y.3    Hildebrandt, M.A.T.4    Wu, W.-J.5    Wei, H.6
  • 46
    • 84870889602 scopus 로고    scopus 로고
    • Variation in dicer gene is associated with increased survival in T-cell lymphoma
    • Li X., Tian X., Zhang B., Zhang Y., Chen J. Variation in dicer gene is associated with increased survival in T-cell lymphoma. PLoS One 2012, 7:e51640.
    • (2012) PLoS One , vol.7 , pp. e51640
    • Li, X.1    Tian, X.2    Zhang, B.3    Zhang, Y.4    Chen, J.5
  • 47
    • 84891935935 scopus 로고    scopus 로고
    • Genetic variations in miR-27a gene decrease mature miR-27a level and reduce gastric cancer susceptibility
    • Yang Q., Jie Z., Ye S., Li Z., Han Z., Wu J., et al. Genetic variations in miR-27a gene decrease mature miR-27a level and reduce gastric cancer susceptibility. Oncogene 2012, 1-10.
    • (2012) Oncogene , pp. 1-10
    • Yang, Q.1    Jie, Z.2    Ye, S.3    Li, Z.4    Han, Z.5    Wu, J.6
  • 48
    • 79959836816 scopus 로고    scopus 로고
    • A functional variant in microRNA-146a promoter modulates its expression and confers disease risk for systemic lupus erythematosus
    • Luo X., Yang W., Ye D.-Q., Cui H., Zhang Y., Hirankarn N., et al. A functional variant in microRNA-146a promoter modulates its expression and confers disease risk for systemic lupus erythematosus. PLoS Genet. 2011, 7:e1002128.
    • (2011) PLoS Genet. , vol.7 , pp. e1002128
    • Luo, X.1    Yang, W.2    Ye, D.-Q.3    Cui, H.4    Zhang, Y.5    Hirankarn, N.6
  • 49
    • 77957673544 scopus 로고    scopus 로고
    • Sex-specific association of X-linked Toll-like receptor 7 (TLR7) with male systemic lupus erythematosus
    • Shen N., Fu Q., Deng Y., Qian X., Zhao J., Kaufman K.M., et al. Sex-specific association of X-linked Toll-like receptor 7 (TLR7) with male systemic lupus erythematosus. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:15838-15843.
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 15838-15843
    • Shen, N.1    Fu, Q.2    Deng, Y.3    Qian, X.4    Zhao, J.5    Kaufman, K.M.6
  • 50
    • 84874782774 scopus 로고    scopus 로고
    • MicroRNA-3148 modulates allelic expression of toll-like receptor 7 variant associated with systemic lupus erythematosus
    • Deng Y., Zhao J., Sakurai D., Kaufman K.M., Edberg J.C., Kimberly R.P., et al. MicroRNA-3148 modulates allelic expression of toll-like receptor 7 variant associated with systemic lupus erythematosus. PLoS Genet. 2013, 9:e1003336.
    • (2013) PLoS Genet. , vol.9 , pp. e1003336
    • Deng, Y.1    Zhao, J.2    Sakurai, D.3    Kaufman, K.M.4    Edberg, J.C.5    Kimberly, R.P.6
  • 52
    • 84857691987 scopus 로고    scopus 로고
    • Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis
    • Gong J., Tong Y., Zhang H.-M., Wang K., Hu T., Shan G., et al. Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis. Hum. Mutat. 2012, 33:254-263.
    • (2012) Hum. Mutat. , vol.33 , pp. 254-263
    • Gong, J.1    Tong, Y.2    Zhang, H.-M.3    Wang, K.4    Hu, T.5    Shan, G.6
  • 53
    • 79952134938 scopus 로고    scopus 로고
    • A synonymous variant in IRGM alters a binding site for miR-196 and causes deregulation of IRGM-dependent xenophagy in Crohn's disease
    • Brest P., Lapaquette P., Souidi M., Lebrigand K., Cesaro A., Vouret-Craviari V., et al. A synonymous variant in IRGM alters a binding site for miR-196 and causes deregulation of IRGM-dependent xenophagy in Crohn's disease. Nat. Genet. 2011, 43:242-245.
    • (2011) Nat. Genet. , vol.43 , pp. 242-245
    • Brest, P.1    Lapaquette, P.2    Souidi, M.3    Lebrigand, K.4    Cesaro, A.5    Vouret-Craviari, V.6
  • 54
    • 80053384370 scopus 로고    scopus 로고
    • Genome-wide association study identifies five new schizophrenia loci
    • The Schizophrenia Psychiatric Genome-Wide Association Study (GWAS) Consortium Genome-wide association study identifies five new schizophrenia loci. Nat. Genet. 2011, 43:969-976.
    • (2011) Nat. Genet. , vol.43 , pp. 969-976
  • 55
    • 84862114807 scopus 로고    scopus 로고
    • Genetic architecture of microRNA expression: implications for the transcriptome and complex traits
    • Gamazon E.R., Ziliak D., Im H.K., LaCroix B., Park D.S., Cox N.J., et al. Genetic architecture of microRNA expression: implications for the transcriptome and complex traits. Am. J. Hum. Genet. 2012, 90:1046-1063.
    • (2012) Am. J. Hum. Genet. , vol.90 , pp. 1046-1063
    • Gamazon, E.R.1    Ziliak, D.2    Im, H.K.3    LaCroix, B.4    Park, D.S.5    Cox, N.J.6
  • 56
    • 84875227104 scopus 로고    scopus 로고
    • Impact of the interaction between 3'-UTR SNPs and microRNA on the expression of human xenobiotic metabolism enzyme and transporter genes
    • Wei R., Yang F., Urban T.J., Li L., Chalasani N., Flockhart D.a, et al. Impact of the interaction between 3'-UTR SNPs and microRNA on the expression of human xenobiotic metabolism enzyme and transporter genes. Front. Genet. 2012, 3:248.
    • (2012) Front. Genet. , vol.3 , pp. 248
    • Wei, R.1    Yang, F.2    Urban, T.J.3    Li, L.4    Chalasani, N.5    Flockhart, D.A.6
  • 57
    • 79959503826 scopus 로고    scopus 로고
    • International HapMap project
    • The International HapMap Consortium International HapMap project. Nature 2003, 426:789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 58
    • 67749132423 scopus 로고    scopus 로고
    • Ago HITS-CLIP decodes miRNA-mRNA interaction maps
    • Chi S.W., Zang J.B., Mele A., Darnell R.B. Ago HITS-CLIP decodes miRNA-mRNA interaction maps. Nature 2009, 460:479-486.
    • (2009) Nature , vol.460 , pp. 479-486
    • Chi, S.W.1    Zang, J.B.2    Mele, A.3    Darnell, R.B.4
  • 61
    • 84876935138 scopus 로고    scopus 로고
    • Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding
    • Helwak A., Kudla G., Dudnakova T., Tollervey D. Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. Cell 2013, 153:654-665.
    • (2013) Cell , vol.153 , pp. 654-665
    • Helwak, A.1    Kudla, G.2    Dudnakova, T.3    Tollervey, D.4
  • 62
    • 84865727393 scopus 로고    scopus 로고
    • The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
    • Derrien T., Johnson R., Bussotti G., Tanzer A., Djebali S., Tilgner H., et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 2012, 22:1775-1789.
    • (2012) Genome Res. , vol.22 , pp. 1775-1789
    • Derrien, T.1    Johnson, R.2    Bussotti, G.3    Tanzer, A.4    Djebali, S.5    Tilgner, H.6
  • 63
    • 84879969127 scopus 로고    scopus 로고
    • Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins
    • Guttman M., Russell P., Ingolia N.T., Weissman J.S., Lander E.S. Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins. Cell 2013, 154:240-251.
    • (2013) Cell , vol.154 , pp. 240-251
    • Guttman, M.1    Russell, P.2    Ingolia, N.T.3    Weissman, J.S.4    Lander, E.S.5
  • 65
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili M.N., Trapnell C., Goff L., Koziol M., Tazon-Vega B., Regev A., et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011, 25:1915-1927.
    • (2011) Genes Dev. , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6
  • 66
    • 62249133709 scopus 로고    scopus 로고
    • Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    • Guttman M., Amit I., Garber M., French C., Lin M.F., Feldser D., et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009, 458:223-237.
    • (2009) Nature , vol.458 , pp. 223-237
    • Guttman, M.1    Amit, I.2    Garber, M.3    French, C.4    Lin, M.F.5    Feldser, D.6
  • 67
    • 84876864345 scopus 로고    scopus 로고
    • Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
    • Kapusta A., Kronenberg Z., Lynch V.J., Zhuo X., Ramsay L., Bourque G., et al. Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PLoS Genet. 2013, 9:e1003470.
    • (2013) PLoS Genet. , vol.9 , pp. e1003470
    • Kapusta, A.1    Kronenberg, Z.2    Lynch, V.J.3    Zhuo, X.4    Ramsay, L.5    Bourque, G.6
  • 68
    • 0035500898 scopus 로고    scopus 로고
    • Transposable elements are found in a large number of human protein-coding genes
    • Nekrutenko A., Li W.H. Transposable elements are found in a large number of human protein-coding genes. Trends Genet. 2001, 17:619-621.
    • (2001) Trends Genet. , vol.17 , pp. 619-621
    • Nekrutenko, A.1    Li, W.H.2
  • 69
    • 0027435358 scopus 로고
    • Neural BC1 RNA as an evolutionary marker: guinea pig remains a rodent
    • Martignetti J.A., Brosius J. Neural BC1 RNA as an evolutionary marker: guinea pig remains a rodent. Proc. Natl. Acad. Sci. U. S. A. 1993, 90:9698-9702.
    • (1993) Proc. Natl. Acad. Sci. U. S. A. , vol.90 , pp. 9698-9702
    • Martignetti, J.A.1    Brosius, J.2
  • 74
    • 0026489906 scopus 로고
    • The product of the mouse Xist gene is a 15kb inactive X-specific transcript containing no conserved ORF and located in the nucleus
    • Brockdorff N., Ashworth A., Kay G.F., McCabe V.M., Norris D.P., Cooper P.J., et al. The product of the mouse Xist gene is a 15kb inactive X-specific transcript containing no conserved ORF and located in the nucleus. Cell 1992, 71:515-526.
    • (1992) Cell , vol.71 , pp. 515-526
    • Brockdorff, N.1    Ashworth, A.2    Kay, G.F.3    McCabe, V.M.4    Norris, D.P.5    Cooper, P.J.6
  • 75
    • 0025829449 scopus 로고
    • Characterization of a murine gene expressed from the inactive X chromosome
    • Borsani G., Tonlorenzi R., Simmler M.C., Dandolo L., Arnaud D., Capra V., et al. Characterization of a murine gene expressed from the inactive X chromosome. Nature 1991, 351:325-329.
    • (1991) Nature , vol.351 , pp. 325-329
    • Borsani, G.1    Tonlorenzi, R.2    Simmler, M.C.3    Dandolo, L.4    Arnaud, D.5    Capra, V.6
  • 76
    • 34250729138 scopus 로고    scopus 로고
    • Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
    • Rinn J.L., Kertesz M., Wang J.K., Squazzo S.L., Xu X., Brugmann S.A., et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007, 129:1311-1323.
    • (2007) Cell , vol.129 , pp. 1311-1323
    • Rinn, J.L.1    Kertesz, M.2    Wang, J.K.3    Squazzo, S.L.4    Xu, X.5    Brugmann, S.A.6
  • 77
    • 79953748673 scopus 로고    scopus 로고
    • A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
    • Wang K.C., Yang Y.W., Liu B., Sanyal A., Corces-Zimmerman R., Chen Y., et al. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature 2011, 472:120-124.
    • (2011) Nature , vol.472 , pp. 120-124
    • Wang, K.C.1    Yang, Y.W.2    Liu, B.3    Sanyal, A.4    Corces-Zimmerman, R.5    Chen, Y.6
  • 78
    • 67650921949 scopus 로고    scopus 로고
    • Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
    • Khalil A.M., Guttman M., Huarte M., Garber M., Raj A., Rivea Morales D., et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:11667-11672.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 11667-11672
    • Khalil, A.M.1    Guttman, M.2    Huarte, M.3    Garber, M.4    Raj, A.5    Rivea Morales, D.6
  • 79
    • 80052536392 scopus 로고    scopus 로고
    • RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders
    • Lin M., Pedrosa E., Shah A., Hrabovsky A., Maqbool S., Lachman H.M. RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders. PLoS One 2011, 6:e23356.
    • (2011) PLoS One , vol.6 , pp. e23356
    • Lin, M.1    Pedrosa, E.2    Shah, A.3    Hrabovsky, A.4    Maqbool, S.5    Lachman, H.M.6
  • 80
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni J.C., Mason C.E., Mane S.M., Stephens M., Gilad Y. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res. 2008, 18:1509-1517.
    • (2008) Genome Res. , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 81
  • 82
    • 84861904178 scopus 로고    scopus 로고
    • Genome regulation by long noncoding RNAs
    • Rinn J.L., Chang H.Y. Genome regulation by long noncoding RNAs. Annu. Rev. Biochem. 2012, 81:145-166.
    • (2012) Annu. Rev. Biochem. , vol.81 , pp. 145-166
    • Rinn, J.L.1    Chang, H.Y.2
  • 83
    • 77952148742 scopus 로고    scopus 로고
    • Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
    • Guttman M., Garber M., Levin J.Z., Donaghey J., Robinson J., Adiconis X., et al. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat. Biotechnol. 2010, 28:503-510.
    • (2010) Nat. Biotechnol. , vol.28 , pp. 503-510
    • Guttman, M.1    Garber, M.2    Levin, J.Z.3    Donaghey, J.4    Robinson, J.5    Adiconis, X.6
  • 84
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
    • Trapnell C., Roberts A., Goff L., Pertea G., Kim D., Kelley D.R., et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 2012, 7:562-578.
    • (2012) Nat. Protoc. , vol.7 , pp. 562-578
    • Trapnell, C.1    Roberts, A.2    Goff, L.3    Pertea, G.4    Kim, D.5    Kelley, D.R.6
  • 85
    • 79957842166 scopus 로고    scopus 로고
    • Computational methods for transcriptome annotation and quantification using RNA-seq
    • Garber M., Grabherr M.G., Guttman M., Trapnell C. Computational methods for transcriptome annotation and quantification using RNA-seq. Nat. Methods 2011, 8:469-477.
    • (2011) Nat. Methods , vol.8 , pp. 469-477
    • Garber, M.1    Grabherr, M.G.2    Guttman, M.3    Trapnell, C.4
  • 86
    • 0033585496 scopus 로고    scopus 로고
    • AHIF: a natural antisense transcript overexpressed in human renal cancer and during hypoxia
    • Thrash-Bingham C.A., Tartof K.D. aHIF: a natural antisense transcript overexpressed in human renal cancer and during hypoxia. J. Natl. Cancer Inst. 1999, 91:143-151.
    • (1999) J. Natl. Cancer Inst. , vol.91 , pp. 143-151
    • Thrash-Bingham, C.A.1    Tartof, K.D.2
  • 87
    • 33751536642 scopus 로고    scopus 로고
    • Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms
    • Lapidot M., Pilpel Y. Genome-wide natural antisense transcription: coupling its regulation to its different regulatory mechanisms. EMBO Rep. 2006, 7:1216-1222.
    • (2006) EMBO Rep. , vol.7 , pp. 1216-1222
    • Lapidot, M.1    Pilpel, Y.2
  • 88
    • 69249217649 scopus 로고    scopus 로고
    • Regulatory roles of natural antisense transcripts
    • Faghihi M.A., Wahlestedt C. Regulatory roles of natural antisense transcripts. Nat. Rev. Mol. Cell Biol. 2009, 10:637-643.
    • (2009) Nat. Rev. Mol. Cell Biol. , vol.10 , pp. 637-643
    • Faghihi, M.A.1    Wahlestedt, C.2
  • 89
    • 19444386412 scopus 로고    scopus 로고
    • Genome-wide analysis of coordinate expression and evolution of human cis-encoded sense-antisense transcripts
    • Chen J., Sun M., Hurst L.D., Carmichael G.G., Rowley J.D. Genome-wide analysis of coordinate expression and evolution of human cis-encoded sense-antisense transcripts. Trends Genet. 2005, 21:326-329.
    • (2005) Trends Genet. , vol.21 , pp. 326-329
    • Chen, J.1    Sun, M.2    Hurst, L.D.3    Carmichael, G.G.4    Rowley, J.D.5
  • 90
    • 44949246486 scopus 로고    scopus 로고
    • A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome
    • Khalil A.M., Faghihi M.A., Modarresi F., Brothers S.P., Wahlestedt C. A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome. PLoS One 2008, 3:e1486.
    • (2008) PLoS One , vol.3 , pp. e1486
    • Khalil, A.M.1    Faghihi, M.A.2    Modarresi, F.3    Brothers, S.P.4    Wahlestedt, C.5
  • 91
    • 80053172782 scopus 로고    scopus 로고
    • The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity
    • Rapicavoli N.A., Poth E.M., Zhu H., Blackshaw S. The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity. Neural Dev. 2011, 6:32.
    • (2011) Neural Dev. , vol.6 , pp. 32
    • Rapicavoli, N.A.1    Poth, E.M.2    Zhu, H.3    Blackshaw, S.4
  • 92
    • 68349090253 scopus 로고    scopus 로고
    • Regulation of the mammalian epigenome by long noncoding RNAs
    • Whitehead J., Pandey G.K., Kanduri C. Regulation of the mammalian epigenome by long noncoding RNAs. Biochim. Biophys. Acta 2009, 1790:936-947.
    • (2009) Biochim. Biophys. Acta , vol.1790 , pp. 936-947
    • Whitehead, J.1    Pandey, G.K.2    Kanduri, C.3
  • 93
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncoding RNAs
    • Wang K.C., Chang H.Y. Molecular mechanisms of long noncoding RNAs. Mol. Cell 2011, 43:904-914.
    • (2011) Mol. Cell , vol.43 , pp. 904-914
    • Wang, K.C.1    Chang, H.Y.2
  • 94
    • 84868705910 scopus 로고    scopus 로고
    • Long noncoding RNAs in cardiac development and pathophysiology
    • Schonrock N., Harvey R.P., Mattick J.S. Long noncoding RNAs in cardiac development and pathophysiology. Circ. Res. 2012, 111:1349-1362.
    • (2012) Circ. Res. , vol.111 , pp. 1349-1362
    • Schonrock, N.1    Harvey, R.P.2    Mattick, J.S.3
  • 95
    • 84875590101 scopus 로고    scopus 로고
    • Long noncoding RNAs: past, present, and future
    • Kung J.T.Y., Colognori D., Lee J.T. Long noncoding RNAs: past, present, and future. Genetics 2013, 193:651-669.
    • (2013) Genetics , vol.193 , pp. 651-669
    • Kung, J.T.Y.1    Colognori, D.2    Lee, J.T.3
  • 96
    • 23044437498 scopus 로고    scopus 로고
    • RNA meets chromatin
    • Bernstein E., Allis C.D. RNA meets chromatin. Genes Dev. 2005, 19:1635-1655.
    • (2005) Genes Dev. , vol.19 , pp. 1635-1655
    • Bernstein, E.1    Allis, C.D.2
  • 97
    • 77954572735 scopus 로고    scopus 로고
    • Long noncoding RNA as modular scaffold of histone modification complexes
    • Tsai M.-C., Manor O., Wan Y., Mosammaparast N., Wang J.K., Lan F., et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010, 329:689-693.
    • (2010) Science , vol.329 , pp. 689-693
    • Tsai, M.-C.1    Manor, O.2    Wan, Y.3    Mosammaparast, N.4    Wang, J.K.5    Lan, F.6
  • 98
    • 77955323879 scopus 로고    scopus 로고
    • A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
    • Huarte M., Guttman M., Feldser D., Garber M., Koziol M.J., Kenzelmann-Broz D., et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 2010, 142:409-419.
    • (2010) Cell , vol.142 , pp. 409-419
    • Huarte, M.1    Guttman, M.2    Feldser, D.3    Garber, M.4    Koziol, M.J.5    Kenzelmann-Broz, D.6
  • 99
    • 79959756263 scopus 로고    scopus 로고
    • Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
    • Hung T., Wang Y., Lin M.F., Koegel A.K., Kotake Y., Grant G.D., et al. Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat. Genet. 2011, 43:621-629.
    • (2011) Nat. Genet. , vol.43 , pp. 621-629
    • Hung, T.1    Wang, Y.2    Lin, M.F.3    Koegel, A.K.4    Kotake, Y.5    Grant, G.D.6
  • 100
    • 78650966670 scopus 로고    scopus 로고
    • Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA
    • Heo J.B., Sung S. Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science 2011, 331:76-79.
    • (2011) Science , vol.331 , pp. 76-79
    • Heo, J.B.1    Sung, S.2
  • 101
    • 72049133207 scopus 로고    scopus 로고
    • Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
    • Swiezewski S., Liu F., Magusin A., Dean C. Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Nature 2009, 462:799-802.
    • (2009) Nature , vol.462 , pp. 799-802
    • Swiezewski, S.1    Liu, F.2    Magusin, A.3    Dean, C.4
  • 102
    • 78649467088 scopus 로고    scopus 로고
    • Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
    • Loewer S., Cabili M.N., Guttman M., Loh Y.-H., Thomas K., Park I.H., et al. Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nat. Genet. 2010, 42:1113-1117.
    • (2010) Nat. Genet. , vol.42 , pp. 1113-1117
    • Loewer, S.1    Cabili, M.N.2    Guttman, M.3    Loh, Y.-H.4    Thomas, K.5    Park, I.H.6
  • 103
    • 58149178579 scopus 로고    scopus 로고
    • NCBI Reference Sequences: current status, policy and new initiatives
    • Pruitt K.D., Tatusova T., Klimke W., Maglott D.R. NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res. 2009, 37:D32-D36.
    • (2009) Nucleic Acids Res. , vol.37 , pp. D32-D36
    • Pruitt, K.D.1    Tatusova, T.2    Klimke, W.3    Maglott, D.R.4
  • 104
    • 77951638287 scopus 로고    scopus 로고
    • Noncoding RNA Gas5 is a growth arrest and starvation-associated repressor of the glucocorticoid receptor
    • Kino T., Hurt D.E., Ichijo T., Nader N., Chrousos G.P. Noncoding RNA Gas5 is a growth arrest and starvation-associated repressor of the glucocorticoid receptor. Sci. China Life Sci. 2010, 3:ra8.
    • (2010) Sci. China Life Sci. , vol.3 , pp. ra8
    • Kino, T.1    Hurt, D.E.2    Ichijo, T.3    Nader, N.4    Chrousos, G.P.5
  • 105
  • 106
    • 77953096072 scopus 로고    scopus 로고
    • Molecular interplay of the non-coding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a
    • Yap K.L., Li S., Muñoz-cabello A.M., Raguz S., Zeng L., Gil J., et al. Molecular interplay of the non-coding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a. Mol. Cell 2010, 38:662-674.
    • (2010) Mol. Cell , vol.38 , pp. 662-674
    • Yap, K.L.1    Li, S.2    Muñoz-cabello, A.M.3    Raguz, S.4    Zeng, L.5    Gil, J.6
  • 107
    • 77951118936 scopus 로고    scopus 로고
    • Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
    • Gupta R.A., Shah N., Wang K.C., Kim J., Horlings H.M., Wong D.J., et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010, 464:1071-1076.
    • (2010) Nature , vol.464 , pp. 1071-1076
    • Gupta, R.A.1    Shah, N.2    Wang, K.C.3    Kim, J.4    Horlings, H.M.5    Wong, D.J.6
  • 108
    • 34250619257 scopus 로고    scopus 로고
    • RNA as a flexible scaffold for proteins: yeast telomerase and beyond
    • Zappulla D.C., Cech T.R. RNA as a flexible scaffold for proteins: yeast telomerase and beyond. Cold Spring Harb. Symp. Quant. Biol. 2006, 71:217-224.
    • (2006) Cold Spring Harb. Symp. Quant. Biol. , vol.71 , pp. 217-224
    • Zappulla, D.C.1    Cech, T.R.2
  • 110
    • 0344429906 scopus 로고    scopus 로고
    • MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer
    • Ji P., Diederichs S., Wang W., Böing S., Metzger R., Schneider P.M., et al. MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene 2003, 22:8031-8041.
    • (2003) Oncogene , vol.22 , pp. 8031-8041
    • Ji, P.1    Diederichs, S.2    Wang, W.3    Böing, S.4    Metzger, R.5    Schneider, P.M.6
  • 111
    • 77956927823 scopus 로고    scopus 로고
    • The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
    • Tripathi V., Ellis J.D., Shen Z., Song D.Y., Pan Q., Watt A.T., et al. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol. Cell 2010, 39:925-938.
    • (2010) Mol. Cell , vol.39 , pp. 925-938
    • Tripathi, V.1    Ellis, J.D.2    Shen, Z.3    Song, D.Y.4    Pan, Q.5    Watt, A.T.6
  • 112
    • 84873451950 scopus 로고    scopus 로고
    • The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells
    • Gutschner T., Hämmerle M., Eissmann M., Hsu J., Kim Y., Hung G., et al. The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Res. 2013, 73:1180-1189.
    • (2013) Cancer Res. , vol.73 , pp. 1180-1189
    • Gutschner, T.1    Hämmerle, M.2    Eissmann, M.3    Hsu, J.4    Kim, Y.5    Hung, G.6
  • 113
    • 84879837310 scopus 로고    scopus 로고
    • MALAT1 - a paradigm for long noncoding RNA function in cancer
    • Gutschner T., Hämmerle M., Diederichs S. MALAT1 - a paradigm for long noncoding RNA function in cancer. J. Mol. Med. (Berl.) 2013, 91:791-801.
    • (2013) J. Mol. Med. (Berl.) , vol.91 , pp. 791-801
    • Gutschner, T.1    Hämmerle, M.2    Diederichs, S.3
  • 114
    • 84864047695 scopus 로고    scopus 로고
    • Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development
    • Eißmann M., Gutschner T., Hämmerle M., Günther S., Caudron-Herger M., Groß M., et al. Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development. RNA Biol. 2012, 9:1076-1087.
    • (2012) RNA Biol. , vol.9 , pp. 1076-1087
    • Eißmann, M.1    Gutschner, T.2    Hämmerle, M.3    Günther, S.4    Caudron-Herger, M.5    Groß, M.6
  • 115
    • 84875890253 scopus 로고    scopus 로고
    • HOTAIR is a negative prognostic factor and exhibits pro-oncogenic activity in pancreatic cancer
    • Kim K., Jutooru I., Chadalapaka G., Johnson G., Frank J., Burghardt R., et al. HOTAIR is a negative prognostic factor and exhibits pro-oncogenic activity in pancreatic cancer. Oncogene 2013, 32:1616-1625.
    • (2013) Oncogene , vol.32 , pp. 1616-1625
    • Kim, K.1    Jutooru, I.2    Chadalapaka, G.3    Johnson, G.4    Frank, J.5    Burghardt, R.6
  • 116
    • 80054029971 scopus 로고    scopus 로고
    • Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers
    • Kogo R., Shimamura T., Mimori K., Kawahara K., Imoto S., Sudo T., et al. Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers. Cancer Res. 2011, 71:6320-6326.
    • (2011) Cancer Res. , vol.71 , pp. 6320-6326
    • Kogo, R.1    Shimamura, T.2    Mimori, K.3    Kawahara, K.4    Imoto, S.5    Sudo, T.6
  • 117
    • 84863393119 scopus 로고    scopus 로고
    • Upregulation of miR-196a and HOTAIR drive malignant character in gastrointestinal stromal tumors
    • Niinuma T., Suzuki H., Nojima M., Nosho K., Yamamoto H., Takamaru H., et al. Upregulation of miR-196a and HOTAIR drive malignant character in gastrointestinal stromal tumors. Cancer Res. 2012, 72:1126-1136.
    • (2012) Cancer Res. , vol.72 , pp. 1126-1136
    • Niinuma, T.1    Suzuki, H.2    Nojima, M.3    Nosho, K.4    Yamamoto, H.5    Takamaru, H.6
  • 118
    • 79955836034 scopus 로고    scopus 로고
    • Overexpression of long non-coding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation
    • Yang Z., Zhou L., Wu L.-M., Lai M.-C., Xie H.-Y., Zhang F., et al. Overexpression of long non-coding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation. Ann. Surg. Oncol. 2011, 18:1243-1250.
    • (2011) Ann. Surg. Oncol. , vol.18 , pp. 1243-1250
    • Yang, Z.1    Zhou, L.2    Wu, L.-M.3    Lai, M.-C.4    Xie, H.-Y.5    Zhang, F.6
  • 119
    • 77957243987 scopus 로고    scopus 로고
    • The non-coding RNA TERRA is a natural ligand and direct inhibitor of human telomerase
    • Redon S., Reichenbach P., Lingner J. The non-coding RNA TERRA is a natural ligand and direct inhibitor of human telomerase. Nucleic Acids Res. 2010, 38:5797-5806.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 5797-5806
    • Redon, S.1    Reichenbach, P.2    Lingner, J.3
  • 121
    • 78249258719 scopus 로고    scopus 로고
    • MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes
    • Tano K., Mizuno R., Okada T., Rakwal R., Shibato J., Masuo Y., et al. MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes. FEBS Lett. 2010, 584:4575-4580.
    • (2010) FEBS Lett. , vol.584 , pp. 4575-4580
    • Tano, K.1    Mizuno, R.2    Okada, T.3    Rakwal, R.4    Shibato, J.5    Masuo, Y.6
  • 122
    • 74949140605 scopus 로고    scopus 로고
    • A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo
    • Li K., Blum Y., Verma A., Liu Z., Pramanik K., Leigh N.R., et al. A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo. Blood 2010, 115:133-139.
    • (2010) Blood , vol.115 , pp. 133-139
    • Li, K.1    Blum, Y.2    Verma, A.3    Liu, Z.4    Pramanik, K.5    Leigh, N.R.6
  • 123
    • 33645532828 scopus 로고    scopus 로고
    • Regulation of apoptosis by a prostate-specific and prostate cancer-associated noncoding gene, PCGEM1
    • Fu X., Ravindranth L., Tran N., Petrovics G., Srivastava S. Regulation of apoptosis by a prostate-specific and prostate cancer-associated noncoding gene, PCGEM1. DNA Cell Biol. 2006, 25:135-141.
    • (2006) DNA Cell Biol. , vol.25 , pp. 135-141
    • Fu, X.1    Ravindranth, L.2    Tran, N.3    Petrovics, G.4    Srivastava, S.5
  • 124
    • 34249014622 scopus 로고    scopus 로고
    • Induction of drug resistance and transformation in human cancer cells by the noncoding RNA CUDR
    • Tsang W.P., Wong T.W.L., Cheung A.H.H., Co C.N.N., Kwok T.T. Induction of drug resistance and transformation in human cancer cells by the noncoding RNA CUDR. RNA 2007, 13:890-898.
    • (2007) RNA , vol.13 , pp. 890-898
    • Tsang, W.P.1    Wong, T.W.L.2    Cheung, A.H.H.3    Co, C.N.N.4    Kwok, T.T.5
  • 125
    • 79957907741 scopus 로고    scopus 로고
    • The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion
    • Khaitan D., Dinger M.E., Mazar J., Crawford J., Smith M.A., Mattick J.S., et al. The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion. Cancer Res. 2011, 71:3852-3862.
    • (2011) Cancer Res. , vol.71 , pp. 3852-3862
    • Khaitan, D.1    Dinger, M.E.2    Mazar, J.3    Crawford, J.4    Smith, M.A.5    Mattick, J.S.6
  • 128
    • 84868266739 scopus 로고    scopus 로고
    • PCA3 noncoding RNA is involved in the control of prostate-cancer cell survival and modulates androgen receptor signaling
    • Ferreira L.B., Palumbo A., de Mello K.D., Sternberg C., Caetano M.S., de Oliveira F.L., et al. PCA3 noncoding RNA is involved in the control of prostate-cancer cell survival and modulates androgen receptor signaling. BMC Cancer 2012, 12:507.
    • (2012) BMC Cancer , vol.12 , pp. 507
    • Ferreira, L.B.1    Palumbo, A.2    de Mello, K.D.3    Sternberg, C.4    Caetano, M.S.5    de Oliveira, F.L.6
  • 129
    • 78650200618 scopus 로고    scopus 로고
    • Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility
    • Chung S., Nakagawa H., Uemura M., Piao L., Ashikawa K., Hosono N., et al. Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility. Cancer Sci. 2011, 102:245-252.
    • (2011) Cancer Sci. , vol.102 , pp. 245-252
    • Chung, S.1    Nakagawa, H.2    Uemura, M.3    Piao, L.4    Ashikawa, K.5    Hosono, N.6
  • 130
    • 33846223294 scopus 로고    scopus 로고
    • Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA
    • Panzitt K., Tschernatsch M.M.O., Guelly C., Moustafa T., Stradner M., Strohmaier H.M., et al. Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA. Gastroenterology 2007, 132:330-342.
    • (2007) Gastroenterology , vol.132 , pp. 330-342
    • Panzitt, K.1    Tschernatsch, M.M.O.2    Guelly, C.3    Moustafa, T.4    Stradner, M.5    Strohmaier, H.M.6
  • 132
    • 33846950027 scopus 로고    scopus 로고
    • A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas
    • Lin R., Maeda S., Liu C., Karin M., Edgington T.S. A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas. Oncogene 2007, 26:851-858.
    • (2007) Oncogene , vol.26 , pp. 851-858
    • Lin, R.1    Maeda, S.2    Liu, C.3    Karin, M.4    Edgington, T.S.5
  • 133
    • 34548208608 scopus 로고    scopus 로고
    • SnapShot: imprinted gene clusters
    • Thorvaldsen J.L., Bartolomei M.S. SnapShot: imprinted gene clusters. Cell 2007, 130:958.
    • (2007) Cell , vol.130 , pp. 958
    • Thorvaldsen, J.L.1    Bartolomei, M.S.2
  • 134
    • 84875200257 scopus 로고    scopus 로고
    • Long noncoding RNAs: cellular address codes in development and disease
    • Batista P.J., Chang H.Y. Long noncoding RNAs: cellular address codes in development and disease. Cell 2013, 152:1298-1307.
    • (2013) Cell , vol.152 , pp. 1298-1307
    • Batista, P.J.1    Chang, H.Y.2
  • 135
    • 84875177348 scopus 로고    scopus 로고
    • X-inactivation, imprinting, and long noncoding RNAs in health and disease
    • Lee J.T., Bartolomei M.S. X-inactivation, imprinting, and long noncoding RNAs in health and disease. Cell 2013, 152:1308-1323.
    • (2013) Cell , vol.152 , pp. 1308-1323
    • Lee, J.T.1    Bartolomei, M.S.2
  • 136
    • 77955406842 scopus 로고    scopus 로고
    • Angelman syndrome, a genomic imprinting disorder of the brain
    • Chamberlain S.J., Lalande M. Angelman syndrome, a genomic imprinting disorder of the brain. J. Neurosci. 2010, 30:9958-9963.
    • (2010) J. Neurosci. , vol.30 , pp. 9958-9963
    • Chamberlain, S.J.1    Lalande, M.2
  • 139
    • 46749083733 scopus 로고    scopus 로고
    • Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of b-secretase
    • Faghihi M.A., Modarresi F., Khalil A.M., Wood D.E., Sahagan B.G., Morgan T.E., et al. Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of b-secretase. Nat. Med. 2008, 14:723-730.
    • (2008) Nat. Med. , vol.14 , pp. 723-730
    • Faghihi, M.A.1    Modarresi, F.2    Khalil, A.M.3    Wood, D.E.4    Sahagan, B.G.5    Morgan, T.E.6
  • 142
    • 84860885909 scopus 로고    scopus 로고
    • A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy
    • Cabianca D.S., Casa V., Bodega B., Xynos A., Ginelli E., Tanaka Y., et al. A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy. Cell 2012, 149:819-831.
    • (2012) Cell , vol.149 , pp. 819-831
    • Cabianca, D.S.1    Casa, V.2    Bodega, B.3    Xynos, A.4    Ginelli, E.5    Tanaka, Y.6
  • 144
    • 77950543794 scopus 로고    scopus 로고
    • A cis-regulatory site downregulates PTHLH in translocation t(8;12)(q13;p11.2) and leads to Brachydactyly Type E
    • Maass P.G., Wirth J., Aydin A., Rump A., Stricker S., Tinschert S., et al. A cis-regulatory site downregulates PTHLH in translocation t(8;12)(q13;p11.2) and leads to Brachydactyly Type E. Hum. Mol. Genet. 2010, 19:848-860.
    • (2010) Hum. Mol. Genet. , vol.19 , pp. 848-860
    • Maass, P.G.1    Wirth, J.2    Aydin, A.3    Rump, A.4    Stricker, S.5    Tinschert, S.6
  • 146
    • 0034235003 scopus 로고    scopus 로고
    • Chromosomal location and genomic structure of the human translin-associated factor X gene (TRAX; TSNAX) revealed by intergenic splicing to DISC1, a gene disrupted by a translocation segregating with schizophrenia
    • Millar J.K., Christie S., Semple C.A., Porteous D.J. Chromosomal location and genomic structure of the human translin-associated factor X gene (TRAX; TSNAX) revealed by intergenic splicing to DISC1, a gene disrupted by a translocation segregating with schizophrenia. Genomics 2000, 67:69-77.
    • (2000) Genomics , vol.67 , pp. 69-77
    • Millar, J.K.1    Christie, S.2    Semple, C.A.3    Porteous, D.J.4
  • 147
    • 79957840356 scopus 로고    scopus 로고
    • Long noncoding RNAs and human disease
    • Wapinski O., Chang H.Y. Long noncoding RNAs and human disease. Trends Cell Biol. 2011, 21:354-361.
    • (2011) Trends Cell Biol. , vol.21 , pp. 354-361
    • Wapinski, O.1    Chang, H.Y.2
  • 149
    • 78650696753 scopus 로고    scopus 로고
    • Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk
    • Burd C.E., Jeck W.R., Liu Y., Sanoff H.K., Wang Z., Sharpless N.E. Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk. PLoS Genet. 2010, 6:e1001233.
    • (2010) PLoS Genet. , vol.6 , pp. e1001233
    • Burd, C.E.1    Jeck, W.R.2    Liu, Y.3    Sanoff, H.K.4    Wang, Z.5    Sharpless, N.E.6
  • 150
    • 79551623370 scopus 로고    scopus 로고
    • ANRIL, a long, noncoding RNA, is an unexpected major hotspot in GWAS
    • Pasmant E., Sabbagh A., Vidaud M., Bièche I. ANRIL, a long, noncoding RNA, is an unexpected major hotspot in GWAS. FASEB J. 2011, 25:444-448.
    • (2011) FASEB J. , vol.25 , pp. 444-448
    • Pasmant, E.1    Sabbagh, A.2    Vidaud, M.3    Bièche, I.4
  • 151
    • 79951473520 scopus 로고    scopus 로고
    • 9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response
    • Harismendy O., Notani D., Song X., Rahim N.G., Tanasa B., Heintzman N., et al. 9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response. Nature 2011, 470:264-268.
    • (2011) Nature , vol.470 , pp. 264-268
    • Harismendy, O.1    Notani, D.2    Song, X.3    Rahim, N.G.4    Tanasa, B.5    Heintzman, N.6
  • 152
    • 84875530540 scopus 로고    scopus 로고
    • LNCipedia: a database for annotated human lncRNA transcript sequences and structures
    • Volders P.-J., Helsens K., Wang X., Menten B., Martens L., Gevaert K., et al. LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Res. 2013, 41:D246-D251.
    • (2013) Nucleic Acids Res. , vol.41 , pp. D246-D251
    • Volders, P.-J.1    Helsens, K.2    Wang, X.3    Menten, B.4    Martens, L.5    Gevaert, K.6
  • 156
    • 77649299348 scopus 로고    scopus 로고
    • An atlas of combinatorial transcriptional regulation in mouse and man
    • Ravasi T., Suzuki H., Cannistraci C.V., Katayama S., Bajic V.B., Tan K., et al. An atlas of combinatorial transcriptional regulation in mouse and man. Cell 2010, 140:744-752.
    • (2010) Cell , vol.140 , pp. 744-752
    • Ravasi, T.1    Suzuki, H.2    Cannistraci, C.V.3    Katayama, S.4    Bajic, V.B.5    Tan, K.6
  • 158
    • 77955140071 scopus 로고    scopus 로고
    • New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism
    • Kapranov P., Ozsolak F., Kim S.W., Foissac S., Lipson D., Hart C., et al. New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism. Nature 2010, 466:642-646.
    • (2010) Nature , vol.466 , pp. 642-646
    • Kapranov, P.1    Ozsolak, F.2    Kim, S.W.3    Foissac, S.4    Lipson, D.5    Hart, C.6
  • 160
    • 84863557177 scopus 로고    scopus 로고
    • Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data
    • Buske F.A., Bauer D.C., Mattick J.S., Bailey T.L. Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data. Genome Res. 2012, 22:1372-1381.
    • (2012) Genome Res. , vol.22 , pp. 1372-1381
    • Buske, F.A.1    Bauer, D.C.2    Mattick, J.S.3    Bailey, T.L.4
  • 161
    • 84863741439 scopus 로고    scopus 로고
    • Chromatin isolation by RNA purification (ChIRP)
    • Chu C., Quinn J., Chang H.Y. Chromatin isolation by RNA purification (ChIRP). J Vis Exp. 2012, 61:e3912.
    • (2012) J Vis Exp. , vol.61 , pp. e3912
    • Chu, C.1    Quinn, J.2    Chang, H.Y.3
  • 163
    • 78650253763 scopus 로고    scopus 로고
    • Genome-wide identification of polycomb-associated RNAs by RIP-seq
    • Zhao J., Ohsumi T.K., Kung J.T., Ogawa Y., Grau D.J., Sarma K., et al. Genome-wide identification of polycomb-associated RNAs by RIP-seq. Mol. Cell 2010, 40:939-953.
    • (2010) Mol. Cell , vol.40 , pp. 939-953
    • Zhao, J.1    Ohsumi, T.K.2    Kung, J.T.3    Ogawa, Y.4    Grau, D.J.5    Sarma, K.6
  • 164
    • 79955005458 scopus 로고    scopus 로고
    • SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer
    • Askarian-Amiri M.E., Crawford J., French J.D., Smart C.E., Smith M.A., Clark M.B., et al. SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer. RNA 2011, 17:878-891.
    • (2011) RNA , vol.17 , pp. 878-891
    • Askarian-Amiri, M.E.1    Crawford, J.2    French, J.D.3    Smart, C.E.4    Smith, M.A.5    Clark, M.B.6
  • 166
    • 84875369248 scopus 로고    scopus 로고
    • Circular RNAs are a large class of animal RNAs with regulatory potency
    • Memczak S., Jens M., Elefsinioti A., Torti F., Krueger J., Rybak A., et al. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 2013, 495:333-338.
    • (2013) Nature , vol.495 , pp. 333-338
    • Memczak, S.1    Jens, M.2    Elefsinioti, A.3    Torti, F.4    Krueger, J.5    Rybak, A.6
  • 168
    • 84882787078 scopus 로고    scopus 로고
    • The CRISPR craze
    • Pennisi E. The CRISPR craze. Science 2013, 341:833-836.
    • (2013) Science , vol.341 , pp. 833-836
    • Pennisi, E.1
  • 172
  • 174
    • 84860742355 scopus 로고    scopus 로고
    • NONCODE v3.0: integrative annotation of long noncoding RNAs
    • Bu D., Yu K., Sun S., Xie C., Skogerbø G., Miao R., et al. NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Res. 2012, 40:D210-D215.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D210-D215
    • Bu, D.1    Yu, K.2    Sun, S.3    Xie, C.4    Skogerbø, G.5    Miao, R.6
  • 175
    • 33644875073 scopus 로고    scopus 로고
    • NPInter: the noncoding RNAs and protein related biomacromolecules interaction database
    • Wu T., Wang J., Liu C., Zhang Y., Shi B., Zhu X., et al. NPInter: the noncoding RNAs and protein related biomacromolecules interaction database. Nucleic Acids Res. 2006, 34:D150-D152.
    • (2006) Nucleic Acids Res. , vol.34 , pp. D150-D152
    • Wu, T.1    Wang, J.2    Liu, C.3    Zhang, Y.4    Shi, B.5    Zhu, X.6
  • 179
    • 78651307694 scopus 로고    scopus 로고
    • StarBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
    • Yang J.-H., Li J.-H., Shao P., Zhou H., Chen Y.-Q., Qu L.-H. starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. Nucleic Acids Res. 2011, 39:D202-D209.
    • (2011) Nucleic Acids Res. , vol.39 , pp. D202-D209
    • Yang, J.-H.1    Li, J.-H.2    Shao, P.3    Zhou, H.4    Chen, Y.-Q.5    Qu, L.-H.6
  • 180
    • 84871214022 scopus 로고    scopus 로고
    • MiRmap: comprehensive prediction of microRNA target repression strength
    • Vejnar C.E., Zdobnov E.M. MiRmap: comprehensive prediction of microRNA target repression strength. Nucleic Acids Res. 2012, 40:11673-11683.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 11673-11683
    • Vejnar, C.E.1    Zdobnov, E.M.2
  • 181
    • 78049420577 scopus 로고    scopus 로고
    • MicroSNiPer: a web tool for prediction of SNP effects on putative microRNA targets
    • Barenboim M., Zoltick B.J., Guo Y., Weinberger D.R. MicroSNiPer: a web tool for prediction of SNP effects on putative microRNA targets. Hum. Mutat. 2010, 31:1223-1232.
    • (2010) Hum. Mutat. , vol.31 , pp. 1223-1232
    • Barenboim, M.1    Zoltick, B.J.2    Guo, Y.3    Weinberger, D.R.4
  • 182
    • 84856105903 scopus 로고    scopus 로고
    • MiRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes
    • Bruno A.E., Li L., Kalabus J.L., Pan Y., Yu A., Hu Z. miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes. BMC Genomics 2012, 13:44.
    • (2012) BMC Genomics , vol.13 , pp. 44
    • Bruno, A.E.1    Li, L.2    Kalabus, J.L.3    Pan, Y.4    Yu, A.5    Hu, Z.6
  • 183
    • 79959805164 scopus 로고    scopus 로고
    • MiRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes
    • Dweep H., Sticht C., Pandey P., Gretz N. miRWalk-database: prediction of possible miRNA binding sites by "walking" the genes of three genomes. J. Biomed. Inform. 2011, 44:839-847.
    • (2011) J. Biomed. Inform. , vol.44 , pp. 839-847
    • Dweep, H.1    Sticht, C.2    Pandey, P.3    Gretz, N.4
  • 184
    • 84862162057 scopus 로고    scopus 로고
    • PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits
    • Ziebarth J.D., Bhattacharya A., Chen A., Cui Y. PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits. Nucleic Acids Res. 2012, 40:D216-D221.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D216-D221
    • Ziebarth, J.D.1    Bhattacharya, A.2    Chen, A.3    Cui, Y.4
  • 185
    • 75549088251 scopus 로고    scopus 로고
    • Patrocles: a database of polymorphic miRNA-mediated gene regulation in vertebrates
    • Hiard S., Charlier C., Coppieters W., Georges M., Baurain D. Patrocles: a database of polymorphic miRNA-mediated gene regulation in vertebrates. Nucleic Acids Res. 2010, 38:D640-D651.
    • (2010) Nucleic Acids Res. , vol.38 , pp. D640-D651
    • Hiard, S.1    Charlier, C.2    Coppieters, W.3    Georges, M.4    Baurain, D.5
  • 186
    • 84869884324 scopus 로고    scopus 로고
    • MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs
    • Liu C., Zhang F., Li T., Lu M., Wang L., Yue W., et al. MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs. BMC Genomics 2012, 13:661.
    • (2012) BMC Genomics , vol.13 , pp. 661
    • Liu, C.1    Zhang, F.2    Li, T.3    Lu, M.4    Wang, L.5    Yue, W.6
  • 187
    • 34748821761 scopus 로고    scopus 로고
    • The role of site accessibility in microRNA target recognition
    • Kertesz M., Iovino N., Unnerstall U., Gaul U., Segal E. The role of site accessibility in microRNA target recognition. Nat. Genet. 2007, 39:1278-1284.
    • (2007) Nat. Genet. , vol.39 , pp. 1278-1284
    • Kertesz, M.1    Iovino, N.2    Unnerstall, U.3    Gaul, U.4    Segal, E.5
  • 188
    • 84858692231 scopus 로고    scopus 로고
    • Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs
    • Niazi F., Valadkhan S. Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs. RNA 2012, 18:825-843.
    • (2012) RNA , vol.18 , pp. 825-843
    • Niazi, F.1    Valadkhan, S.2
  • 190
    • 79959949911 scopus 로고    scopus 로고
    • NcFANs: a web server for functional annotation of long non-coding RNAs
    • Liao Q., Xiao H., Bu D., Xie C., Miao R., Luo H., et al. ncFANs: a web server for functional annotation of long non-coding RNAs. Nucleic Acids Res. 2011, 39:W118-W124.
    • (2011) Nucleic Acids Res. , vol.39 , pp. W118-W124
    • Liao, Q.1    Xiao, H.2    Bu, D.3    Xie, C.4    Miao, R.5    Luo, H.6
  • 191
    • 84882643385 scopus 로고    scopus 로고
    • Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis
    • Liu K., Yan Z., Li Y., Sun Z. Linc2GO: a human LincRNA function annotation resource based on ceRNA hypothesis. Bioinformatics 2013, 29:2221-2222.
    • (2013) Bioinformatics , vol.29 , pp. 2221-2222
    • Liu, K.1    Yan, Z.2    Li, Y.3    Sun, Z.4
  • 192
    • 84876125829 scopus 로고    scopus 로고
    • LncRNADisease: a database for long-non-coding RNA-associated diseases
    • Chen G., Wang Z., Wang D., Qiu C., Liu M., Chen X., et al. LncRNADisease: a database for long-non-coding RNA-associated diseases. Nucleic Acids Res. 2013, 41:D983-D986.
    • (2013) Nucleic Acids Res. , vol.41 , pp. D983-D986
    • Chen, G.1    Wang, Z.2    Wang, D.3    Qiu, C.4    Liu, M.5    Chen, X.6


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