-
1
-
-
84880652927
-
Targeting long non-coding RNA to therapeutically upregulate gene expression
-
Wahlestedt C: Targeting long non-coding RNA to therapeutically upregulate gene expression. Nat Rev Drug Discov 2013, 12:433-446.
-
(2013)
Nat Rev Drug Discov
, vol.12
, pp. 433-446
-
-
Wahlestedt, C.1
-
2
-
-
41149112564
-
A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition
-
Beltran M, Puig I, Pena C, Garcia JM, Alvarez AB, Pena R, Bonilla F, de Herreros AG: A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. Genes Dev 2008, 22:756-769.
-
(2008)
Genes Dev
, vol.22
, pp. 756-769
-
-
Beltran, M.1
Puig, I.2
Pena, C.3
Garcia, J.M.4
Alvarez, A.B.5
Pena, R.6
Bonilla, F.7
De Herreros, A.G.8
-
3
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ, Tsai MC, Hung T, Argani P, Rinn JL, Wang Y, Brzoska P, Kong B, Li R, West RB, van de Vijver MJ, Sukumar S, Chang HY: Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010, 464:1071-1076.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
Wang, Y.11
Brzoska, P.12
Kong, B.13
Li, R.14
West, R.B.15
Van De Vijver, M.J.16
Sukumar, S.17
Chang, H.Y.18
-
4
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, Goodnough LH, Helms JA, Farnham PJ, Segal E, Chang HY: Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007, 129:1311-1323.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
Chang, H.Y.11
-
5
-
-
77957796079
-
MICA polymorphism identified by whole genome array associated with NKG2D-mediated cytotoxicity in T-cell large granular lymphocyte leukemia
-
Viny AD, Clemente MJ, Jasek M, Askar M, Ishwaran H, Nowacki A, Zhang A, Maciejewski JP: MICA polymorphism identified by whole genome array associated with NKG2D-mediated cytotoxicity in T-cell large granular lymphocyte leukemia. Haematologica 2010, 95:1713-1721.
-
(2010)
Haematologica
, vol.95
, pp. 1713-1721
-
-
Viny, A.D.1
Clemente, M.J.2
Jasek, M.3
Askar, M.4
Ishwaran, H.5
Nowacki, A.6
Zhang, A.7
Maciejewski, J.P.8
-
6
-
-
78651397147
-
Rinn JL: Large non-coding RNAs: Missing links in cancer?
-
Huarte M, Rinn JL: Large non-coding RNAs: missing links in cancer? Hum Mol Genet 2010, 19:R152-R161.
-
(2010)
Hum Mol Genet
, vol.19
, pp. R152-R161
-
-
Huarte, M.1
-
7
-
-
79957840356
-
Long noncoding RNAs and human disease
-
Wapinski O, Chang HY: Long noncoding RNAs and human disease. Trends Cell Biol 2011, 21:354-361.
-
(2011)
Trends Cell Biol
, vol.21
, pp. 354-361
-
-
Wapinski, O.1
Chang, H.Y.2
-
8
-
-
84890000516
-
Association between polymorphisms in long non-coding RNA PRNCR1 in 8q24 and risk of colorectal cancer
-
Li L, Sun R, Liang Y, Pan X, Li Z, Bai P, Zeng X, Zhang D, Zhang L, Gao L: Association between polymorphisms in long non-coding RNA PRNCR1 in 8q24 and risk of colorectal cancer. J Exper Clin Can Res 2013, 32:104.
-
(2013)
J Exper Clin Can Res
, vol.32
, pp. 104
-
-
Li, L.1
Sun, R.2
Liang, Y.3
Pan, X.4
Li, Z.5
Bai, P.6
Zeng, X.7
Zhang, D.8
Zhang, L.9
Gao, L.10
-
9
-
-
84877028141
-
Comprehensive molecular portraits of human breast tumours
-
Cancer Genome Atlas N: Comprehensive molecular portraits of human breast tumours. Nature 2012, 490:61-70.
-
(2012)
Nature
, vol.490
, pp. 61-70
-
-
Cancer Genome, A.N.1
-
10
-
-
0034680102
-
Molecular portraits of human breast tumours
-
Perou CM, Sorlie T, Eisen MB, van de Rijn M, Jeffrey SS, Rees CA, Pollack JR, Ross DT, Johnsen H, Akslen LA, Fluge O, Pergamenschikov A, Williams C, Zhu SX, Lønning PE, Børresen-Dale AL, Brown PO, Botstein D: Molecular portraits of human breast tumours. Nature 2000, 406:747-752.
-
(2000)
Nature
, vol.406
, pp. 747-752
-
-
Perou, C.M.1
Sorlie, T.2
Eisen, M.B.3
Van De Rijn, M.4
Jeffrey, S.S.5
Rees, C.A.6
Pollack, J.R.7
Ross, D.T.8
Johnsen, H.9
Akslen, L.A.10
Fluge, O.11
Pergamenschikov, A.12
Williams, C.13
Zhu, S.X.14
Lønning, P.E.15
Børresen-Dale, A.L.16
Brown, P.O.17
Botstein, D.18
-
11
-
-
0035845511
-
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
-
Sorlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen MB, van de Rijn M, Jeffrey SS, Thorsen T, Quist H, Matese JC, Brown PO, Botstein D, Lønning PE, Børresen-Dale AL: Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci U S A 2001, 98:10869-10874.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 10869-10874
-
-
Sorlie, T.1
Perou, C.M.2
Tibshirani, R.3
Aas, T.4
Geisler, S.5
Johnsen, H.6
Hastie, T.7
Eisen, M.B.8
Van De Rijn, M.9
Jeffrey, S.S.10
Thorsen, T.11
Quist, H.12
Matese, J.C.13
Brown, P.O.14
Botstein, D.15
Lønning, P.E.16
Børresen-Dale, A.L.17
-
12
-
-
34447132081
-
Development and clinical utility of a 21-gene recurrence score prognostic assay in patients with early breast cancer treated with tamoxifen
-
Paik S: Development and clinical utility of a 21-gene recurrence score prognostic assay in patients with early breast cancer treated with tamoxifen. Oncologist 2007, 12:631-635.
-
(2007)
Oncologist
, vol.12
, pp. 631-635
-
-
Paik, S.1
-
13
-
-
19944422061
-
A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer
-
Paik S, Shak S, Tang G, Kim C, Baker J, Cronin M, Baehner FL, Walker MG, Watson D, Park T, Hiller W, Fisher ER, Wickerham DL, Bryant J, Wolmark N: A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer. N Engl J Med 2004, 351:2817-2826.
-
(2004)
N Engl J Med
, vol.351
, pp. 2817-2826
-
-
Paik, S.1
Shak, S.2
Tang, G.3
Kim, C.4
Baker, J.5
Cronin, M.6
Baehner, F.L.7
Walker, M.G.8
Watson, D.9
Park, T.10
Hiller, W.11
Fisher, E.R.12
Wickerham, D.L.13
Bryant, J.14
Wolmark, N.15
-
14
-
-
84908054563
-
A 41-gene signature derived from breast cancer stem cells as a predictor of survival
-
Yin ZQ, Liu JJ, Xu YC, Yu J, Ding GH, Yang F, Tang L, Liu BH, Ma Y, Xia YW, Lin XL, Wang HX: A 41-gene signature derived from breast cancer stem cells as a predictor of survival. J Exper Clin Can Res 2014, 33:49.
-
(2014)
J Exper Clin Can Res
, vol.33
, pp. 49
-
-
Yin, Z.Q.1
Liu, J.J.2
Xu, Y.C.3
Yu, J.4
Ding, G.H.5
Yang, F.6
Tang, L.7
Liu, B.H.8
Ma, Y.9
Xia, Y.W.10
Lin, X.L.11
Wang, H.X.12
-
15
-
-
0344429906
-
MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer
-
Ji P, Diederichs S, Wang W, Boing S, Metzger R, Schneider PM, Tidow N, Brandt B, Buerger H, Bulk E, Thomas M, Berdel WE, Serve H, Müller-Tidow C: MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene 2003, 22:8031-8041.
-
(2003)
Oncogene
, vol.22
, pp. 8031-8041
-
-
Ji, P.1
Diederichs, S.2
Wang, W.3
Boing, S.4
Metzger, R.5
Schneider, P.M.6
Tidow, N.7
Brandt, B.8
Buerger, H.9
Bulk, E.10
Thomas, M.11
Berdel, W.E.12
Serve, H.13
Müller-Tidow, C.14
-
16
-
-
81755161347
-
The long noncoding MALAT-1 RNA indicates a poor prognosis in non-small cell lung cancer and induces migration and tumor growth
-
Schmidt LH, Spieker T, Koschmieder S, Schaffers S, Humberg J, Jungen D, Bulk E, Hascher A, Wittmer D, Marra A, Hillejan L, Wiebe K, Berdel WE, Wiewrodt R, Muller-Tidow C: The long noncoding MALAT-1 RNA indicates a poor prognosis in non-small cell lung cancer and induces migration and tumor growth. J Thorac Oncol 2011, 6:1984-1992.
-
(2011)
J Thorac Oncol
, vol.6
, pp. 1984-1992
-
-
Schmidt, L.H.1
Spieker, T.2
Koschmieder, S.3
Schaffers, S.4
Humberg, J.5
Jungen, D.6
Bulk, E.7
Hascher, A.8
Wittmer, D.9
Marra, A.10
Hillejan, L.11
Wiebe, K.12
Berdel, W.E.13
Wiewrodt, R.14
Muller-Tidow, C.15
-
17
-
-
39749096054
-
Long, abundantly expressed non-coding transcripts are altered in cancer
-
Perez DS, Hoage TR, Pritchett JR, Ducharme-Smith AL, Halling ML, Ganapathiraju SC, Streng PS, Smith DI: Long, abundantly expressed non-coding transcripts are altered in cancer. Hum Mol Genet 2008, 17:642-655.
-
(2008)
Hum Mol Genet
, vol.17
, pp. 642-655
-
-
Perez, D.S.1
Hoage, T.R.2
Pritchett, J.R.3
Ducharme-Smith, A.L.4
Halling, M.L.5
Ganapathiraju, S.C.6
Streng, P.S.7
Smith, D.I.8
-
18
-
-
8844260368
-
BC200 RNA in invasive and preinvasive breast cancer
-
Iacoangeli A, Lin Y, Morley EJ, Muslimov IA, Bianchi R, Reilly J, Weedon J, Diallo R, Bocker W, Tiedge H: BC200 RNA in invasive and preinvasive breast cancer. Carcinogenesis 2004, 25:2125-2133.
-
(2004)
Carcinogenesis
, vol.25
, pp. 2125-2133
-
-
Iacoangeli, A.1
Lin, Y.2
Morley, E.J.3
Muslimov, I.A.4
Bianchi, R.5
Reilly, J.6
Weedon, J.7
Diallo, R.8
Bocker, W.9
Tiedge, H.10
-
19
-
-
58249098615
-
GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer
-
Mourtada-Maarabouni M, Pickard MR, Hedge VL, Farzaneh F, Williams GT: GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer. Oncogene 2009, 28:195-208.
-
(2009)
Oncogene
, vol.28
, pp. 195-208
-
-
Mourtada-Maarabouni, M.1
Pickard, M.R.2
Hedge, V.L.3
Farzaneh, F.4
Williams, G.T.5
-
20
-
-
79956095811
-
LSINCT5 is over expressed in breast and ovarian cancer and affects cellular proliferation
-
Silva JM, Boczek NJ, Berres MW, Ma X, Smith DI: LSINCT5 is over expressed in breast and ovarian cancer and affects cellular proliferation. RNA Biol 2011, 8:496-505.
-
(2011)
RNA Biol
, vol.8
, pp. 496-505
-
-
Silva, J.M.1
Boczek, N.J.2
Berres, M.W.3
Ma, X.4
Smith, D.I.5
-
21
-
-
80053445408
-
Human cancer long non-coding RNA transcriptomes
-
Gibb EA, Vucic EA, Enfield KS, Stewart GL, Lonergan KM, Kennett JY, Becker-Santos DD, MacAulay CE, Lam S, Brown CJ, Lam WL: Human cancer long non-coding RNA transcriptomes. PLoS One 2011, 6:e25915.
-
(2011)
PLoS One
, vol.6
, pp. e25915
-
-
Gibb, E.A.1
Vucic, E.A.2
Enfield, K.S.3
Stewart, G.L.4
Lonergan, K.M.5
Kennett, J.Y.6
Becker-Santos, D.D.7
MacAulay, C.E.8
Lam, S.9
Brown, C.J.10
Lam, W.L.11
-
22
-
-
77951531009
-
GATExplorer: Genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs
-
Risueno A, Fontanillo C, Dinger ME, de Las Rivas J: GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs. BMC Bioinformatics 2010, 11:221.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 221
-
-
Risueno, A.1
Fontanillo, C.2
Dinger, M.E.3
De Las Rivas, J.4
-
23
-
-
79959949911
-
NcFANs: A web server for functional annotation of long non-coding RNAs
-
Liao Q, Xiao H, Bu D, Xie C, Miao R, Luo H, Zhao G, Yu K, Zhao H, Skogerbo G, Chen R, Wu Z, Liu C, Zhao Y: ncFANs: a web server for functional annotation of long non-coding RNAs. Nucleic Acids Res 2011, 39:W118-W124.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W118-W124
-
-
Liao, Q.1
Xiao, H.2
Bu, D.3
Xie, C.4
Miao, R.5
Luo, H.6
Zhao, G.7
Yu, K.8
Zhao, H.9
Skogerbo, G.10
Chen, R.11
Wu, Z.12
Liu, C.13
Zhao, Y.14
-
24
-
-
84871735806
-
Noncoder: A web interface for exon array-based detection of long non-coding RNAs
-
Gellert P, Ponomareva Y, Braun T, Uchida S: Noncoder: a web interface for exon array-based detection of long non-coding RNAs. Nucleic Acids Res 2013, 41:e20.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. e20
-
-
Gellert, P.1
Ponomareva, Y.2
Braun, T.3
Uchida, S.4
-
25
-
-
84880154515
-
Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer
-
Du Z, Fei T, Verhaak RG, Su Z, Zhang Y, Brown M, Chen Y, Liu XS: Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer. Nat Struct Mol Biol 2013, 20:908-913.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 908-913
-
-
Du, Z.1
Fei, T.2
Verhaak, R.G.3
Su, Z.4
Zhang, Y.5
Brown, M.6
Chen, Y.7
Liu, X.S.8
-
26
-
-
84863708888
-
Long non-coding RNA expression profiles predict clinical phenotypes in glioma
-
Zhang X, Sun S, Pu JK, Tsang AC, Lee D, Man VO, Lui WM, Wong ST, Leung GK: Long non-coding RNA expression profiles predict clinical phenotypes in glioma. Neurobiol Dis 2012, 48:1-8.
-
(2012)
Neurobiol Dis
, vol.48
, pp. 1-8
-
-
Zhang, X.1
Sun S, P.J.K.2
Tsang, A.C.3
Lee, D.4
Man, V.O.5
Lui, W.M.6
Wong, S.T.7
Leung, G.K.8
-
27
-
-
84879424212
-
A long non-coding RNA signature in glioblastoma multiforme predicts survival
-
Zhang XQ, Sun S, Lam KF, Kiang KM, Pu JK, Ho AS, Lui WM, Fung CF, Wong TS, Leung GK: A long non-coding RNA signature in glioblastoma multiforme predicts survival. Neurobiol Dis 2013, 58:123-131.
-
(2013)
Neurobiol Dis
, vol.58
, pp. 123-131
-
-
Zhang, X.Q.1
Sun, S.2
Lam, K.F.3
Kiang, K.M.4
Pu, J.K.5
Ho, A.S.6
Lui, W.M.7
Fung, C.F.8
Wong, T.S.9
Leung, G.K.10
-
28
-
-
84893701149
-
LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma
-
Epub ahead of print
-
Li J, Chen Z, Tian L, Zhou C, He MY, Gao Y, Wang S, Zhou F, Shi S, Feng X, Sun N, Liu Z, Skogerboe G, Dong J, Yao R, Zhao Y, Sun J, Zhang B, Yu Y, Shi X, Luo M, Shao K, Li N, Qiu B, Tan F, Chen R, He J: LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma. Gut 2014, doi:10.1136/gutjnl-2013-305806. [Epub ahead of print].
-
(2014)
Gut
-
-
Li, J.1
Chen, Z.2
Tian, L.3
Zhou, C.4
He, M.Y.5
Gao, Y.6
Wang, S.7
Zhou, F.8
Shi, S.9
Feng, X.10
Sun, N.11
Liu, Z.12
Skogerboe, G.13
Dong, J.14
Yao, R.15
Zhao, Y.16
Sun, J.17
Zhang, B.18
Yu, Y.19
Shi, X.20
Luo, M.21
Shao, K.22
Li, N.23
Qiu, B.24
Tan, F.25
Chen, R.26
He, J.27
more..
-
29
-
-
79955121426
-
Correlation of microarray-based breast cancer molecular subtypes and clinical outcomes: Implications for treatment optimization
-
Kao KJ, Chang KM, Hsu HC, Huang AT: Correlation of microarray-based breast cancer molecular subtypes and clinical outcomes: implications for treatment optimization. BMC Cancer 2011, 11:143.
-
(2011)
BMC Cancer
, vol.11
, pp. 143
-
-
Kao, K.J.1
Chang, K.M.2
Hsu, H.C.3
Huang, A.T.4
-
30
-
-
67649300721
-
Genes that mediate breast cancer metastasis to the brain
-
Bos PD, Zhang XH, Nadal C, Shu W, Gomis RR, Nguyen DX, Minn AJ, van de Vijver MJ, Gerald WL, Foekens JA, Massague J: Genes that mediate breast cancer metastasis to the brain. Nature 2009, 459:1005-1009.
-
(2009)
Nature
, vol.459
, pp. 1005-1009
-
-
Bos, P.D.1
Zhang, X.H.2
Nadal, C.3
Shu, W.4
Gomis, R.R.5
Nguyen, D.X.6
Minn, A.J.7
Van De Vijver, M.J.8
Gerald, W.L.9
Foekens, J.A.10
Massague, J.11
-
31
-
-
79958728723
-
A gene expression signature identifies two prognostic subgroups of basal breast cancer
-
Sabatier R, Finetti P, Cervera N, Lambaudie E, Esterni B, Mamessier E, Tallet A, Chabannon C, Extra JM, Jacquemier J, Viens P, Birnbaum D, Bertucci F, Viens P, Birnbaum D, Bertucci F: A gene expression signature identifies two prognostic subgroups of basal breast cancer. Breast Cancer Res Treat 2011, 126:407-420.
-
(2011)
Breast Cancer Res Treat
, vol.126
, pp. 407-420
-
-
Sabatier, R.1
Finetti, P.2
Cervera, N.3
Lambaudie, E.4
Esterni, B.5
Mamessier, E.6
Tallet, A.7
Chabannon, C.8
Extra, J.M.9
Jacquemier, J.10
Viens, P.11
Birnbaum, D.12
Bertucci, F.13
Viens, P.14
Birnbaum, D.15
Bertucci, F.16
-
32
-
-
81155131661
-
Down-regulation of ECRG4, a candidate tumor suppressor gene, in human breast cancer
-
Sabatier R, Finetti P, Adelaide J, Guille A, Borg JP, Chaffanet M, Lane L, Birnbaum D, Bertucci F: Down-regulation of ECRG4, a candidate tumor suppressor gene, in human breast cancer. PLoS One 2011, 6:e27656.
-
(2011)
PLoS One
, vol.6
, pp. e27656
-
-
Sabatier, R.1
Finetti, P.2
Adelaide, J.3
Guille, A.4
Borg, J.P.5
Chaffanet, M.6
Lane, L.7
Birnbaum, D.8
Bertucci, F.9
-
33
-
-
84885131104
-
Correlating transcriptional networks to breast cancer survival: A large-scale coexpression analysis
-
Clarke C, Madden SF, Doolan P, Aherne ST, Joyce H, O'Driscoll L, Gallagher WM, Hennessy BT, Moriarty M, Crown J, Kennedy S, Clynes M: Correlating transcriptional networks to breast cancer survival: a large-scale coexpression analysis. Carcinogenesis 2013, 34(10):2300-2308.
-
(2013)
Carcinogenesis
, vol.34
, Issue.10
, pp. 2300-2308
-
-
Clarke, C.1
Madden, S.F.2
Doolan, P.3
Aherne, S.T.4
Joyce, H.5
O'Driscoll, L.6
Gallagher, W.M.7
Hennessy, B.T.8
Moriarty, M.9
Crown, J.10
Kennedy, S.11
Clynes, M.12
-
34
-
-
13444293342
-
RNAdb-a comprehensive mammalian noncoding RNA database
-
Pang KC, Stephen S, Engstrom PG, Tajul-Arifin K, Chen W, Wahlestedt C, Lenhard B, Hayashizaki Y, Mattick JS: RNAdb-a comprehensive mammalian noncoding RNA database. Nucleic Acids Res 2005, 33:D125-D130.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. D125-D130
-
-
Pang, K.C.1
Stephen, S.2
Engstrom, P.G.3
Tajul-Arifin, K.4
Chen, W.5
Wahlestedt, C.6
Lenhard, B.7
Hayashizaki, Y.8
Mattick, J.S.9
-
35
-
-
58149177177
-
NRED: A database of long noncoding RNA expression
-
Dinger ME, Pang KC, Mercer TR, Crowe ML, Grimmond SM, Mattick JS: NRED: a database of long noncoding RNA expression. Nucleic Acids Res 2009, 37:D122-D126.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D122-D126
-
-
Dinger, M.E.1
Pang, K.C.2
Mercer, T.R.3
Crowe, M.L.4
Grimmond, S.M.5
Mattick, J.S.6
-
36
-
-
84884915826
-
Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts
-
Sun L, Luo H, Bu D, Zhao G, Yu K, Zhang C, Liu Y, Chen R, Zhao Y: Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts. Nucleic Acids Res 2013, 41:e166.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. e166
-
-
Sun, L.1
Luo, H.2
Bu, D.3
Zhao, G.4
Yu, K.5
Zhang, C.6
Liu, Y.7
Chen, R.8
Zhao, Y.9
-
37
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP: Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 2005, 102:15545-15550.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
38
-
-
34447560961
-
Analysis of gene expression data using BRB-ArrayTools
-
Simon R, Lam A, Li MC, Ngan M, Menenzes S, Zhao Y: Analysis of gene expression data using BRB-ArrayTools. Cancer Inform 2007, 3:11-17.
-
(2007)
Cancer Inform
, vol.3
, pp. 11-17
-
-
Simon, R.1
Lam A, L.M.C.2
Ngan, M.3
Menenzes, S.4
Zhao, Y.5
-
39
-
-
77953020220
-
Consistency of random survival forests
-
Ishwaran H, Kogalur UB: Consistency of random survival forests. Stat Probabil Lett 2010, 80:1056-1064.
-
(2010)
Stat Probabil Lett
, vol.80
, pp. 1056-1064
-
-
Ishwaran, H.1
Kogalur, U.B.2
-
40
-
-
84867528237
-
Gene expression signature-based prognostic risk score in patients with primary central nervous system lymphoma
-
Kawaguchi A, Iwadate Y, Komohara Y, Sano M, Kajiwara K, Yajima N, Tsuchiya N, Homma J, Aoki H, Kobayashi T, Sakai Y, Hondoh H, Fujii Y, Kakuma T, Yamanaka R: Gene expression signature-based prognostic risk score in patients with primary central nervous system lymphoma. Clin Cancer Res 2012, 18:5672-5681.
-
(2012)
Clin Cancer Res
, vol.18
, pp. 5672-5681
-
-
Kawaguchi, A.1
Iwadate, Y.2
Komohara, Y.3
Sano, M.4
Kajiwara, K.5
Yajima, N.6
Tsuchiya, N.7
Homma, J.8
Aoki, H.9
Kobayashi, T.10
Sakai, Y.11
Hondoh, H.12
Fujii, Y.13
Kakuma, T.14
Yamanaka, R.15
-
41
-
-
80051561099
-
Prediction of survival in diffuse large B-cell lymphoma based on the expression of 2 genes reflecting tumor and microenvironment
-
Alizadeh AA, Gentles AJ, Alencar AJ, Liu CL, Kohrt HE, Houot R, Goldstein MJ, Zhao S, Natkunam Y, Advani RH, Gascoyne RD, Briones J, Tibshirani RJ, Myklebust JH, Plevritis SK, Lossos IS, Levy R: Prediction of survival in diffuse large B-cell lymphoma based on the expression of 2 genes reflecting tumor and microenvironment. Blood 2011, 118:1350-1358.
-
(2011)
Blood
, vol.118
, pp. 1350-1358
-
-
Alizadeh, A.A.1
Gentles, A.J.2
Alencar, A.J.3
Liu, C.L.4
Kohrt, H.E.5
Houot, R.6
Goldstein, M.J.7
Zhao, S.8
Natkunam, Y.9
Advani, R.H.10
Gascoyne, R.D.11
Briones, J.12
Tibshirani, R.J.13
Myklebust, J.H.14
Plevritis, S.K.15
Lossos, I.S.16
Levy, R.17
-
42
-
-
79953723772
-
Genetic alterations in glioma
-
Bralten LB, French PJ: Genetic alterations in glioma. Cancers 2011, 3:1129-1140.
-
(2011)
Cancers
, vol.3
, pp. 1129-1140
-
-
Bralten, L.B.1
French, P.J.2
-
43
-
-
84862188915
-
A DNA repair pathway-focused score for prediction of outcomes in ovarian cancer treated with platinum-based chemotherapy
-
Kang J, D'Andrea AD, Kozono D: A DNA repair pathway-focused score for prediction of outcomes in ovarian cancer treated with platinum-based chemotherapy. J Natl Cancer Inst 2012, 104:670-681.
-
(2012)
J Natl Cancer Inst
, vol.104
, pp. 670-681
-
-
Kang, J.1
D'Andrea, A.D.2
Kozono, D.3
-
44
-
-
67650999875
-
The basics of epithelial-mesenchymal transition
-
Kalluri R, Weinberg RA: The basics of epithelial-mesenchymal transition. J Clin Invest 2009, 119:1420-1428.
-
(2009)
J Clin Invest
, vol.119
, pp. 1420-1428
-
-
Kalluri, R.1
Weinberg, R.A.2
-
45
-
-
4043181214
-
Cancer genes and the pathways they control
-
Vogelstein B, Kinzler KW: Cancer genes and the pathways they control. Nat Med 2004, 10:789-799.
-
(2004)
Nat Med
, vol.10
, pp. 789-799
-
-
Vogelstein, B.1
Kinzler, K.W.2
-
46
-
-
84884673330
-
The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor
-
Cui Z, Ren S, Lu J, Wang F, Xu W, Sun Y, Wei M, Chen J, Gao X, Xu C, Mao JH, Sun Y: The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor. Urol Oncol 2013, 31(7):1117-1123.
-
(2013)
Urol Oncol
, vol.31
, Issue.7
, pp. 1117-1123
-
-
Cui, Z.1
Ren, S.2
Lu, J.3
Wang, F.4
Xu, W.5
Sun, Y.6
Wei, M.7
Chen, J.8
Gao, X.9
Xu, C.10
Mao, J.H.11
Sun, Y.12
-
47
-
-
84862777038
-
Long non-coding RNAs in Huntington's disease neurodegeneration
-
Johnson R: Long non-coding RNAs in Huntington's disease neurodegeneration. Neurobiol Dis 2012, 46:245-254.
-
(2012)
Neurobiol Dis
, vol.46
, pp. 245-254
-
-
Johnson, R.1
-
48
-
-
78651305638
-
Mining Affymetrix microarray data for long non-coding RNAs: Altered expression in the nucleus accumbens of heroin abusers
-
Michelhaugh SK, Lipovich L, Blythe J, Jia H, Kapatos G, Bannon MJ: Mining Affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers. J Neurochem 2011, 116:459-466.
-
(2011)
J Neurochem
, vol.116
, pp. 459-466
-
-
Michelhaugh, S.K.1
Lipovich, L.2
Blythe, J.3
Jia, H.4
Kapatos, G.5
Bannon, M.J.6
-
49
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R: The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res 2012, 22:1775-1789.
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
Lagarde, J.11
Veeravalli, L.12
Ruan, X.13
Ruan, Y.14
Lassmann, T.15
Carninci, P.16
Brown, J.B.17
Lipovich, L.18
Gonzalez, J.M.19
Thomas, M.20
Davis, C.A.21
Shiekhattar, R.22
Gingeras, T.R.23
Hubbard, T.J.24
Notredame, C.25
Harrow, J.26
Guigó, R.27
more..
-
50
-
-
84887512740
-
Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: Emerging functional associations
-
Fachel AA, Tahira AC, Vilella-Arias SA, Maracaja-Coutinho V, Gimba ER, Vignal GM, Campos FS, Reis EM, Verjovski-Almeida S: Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations. Mol Cancer 2013, 12:140.
-
(2013)
Mol Cancer
, vol.12
, pp. 140
-
-
Fachel, A.A.1
Tahira, A.C.2
Vilella-Arias, S.A.3
Maracaja-Coutinho, V.4
Gimba, E.R.5
Vignal, G.M.6
Campos, F.S.7
Reis, E.M.8
Verjovski-Almeida, S.9
-
51
-
-
79957983437
-
Structural and functional differences in the long non-coding RNA hotair in mouse and human
-
Schorderet P, Duboule D: Structural and functional differences in the long non-coding RNA hotair in mouse and human. PLoS Genet 2011, 7:e1002071.
-
(2011)
PLoS Genet
, vol.7
, pp. e1002071
-
-
Schorderet, P.1
Duboule, D.2
-
52
-
-
33646486740
-
The cost of dichotomising continuous variables
-
Altman DG, Royston P: The cost of dichotomising continuous variables. BMJ 2006, 332:1080.
-
(2006)
BMJ
, vol.332
, pp. 1080
-
-
Altman, D.G.1
Royston, P.2
-
53
-
-
0029740426
-
The National Cancer Data Base report on breast carcinoma characteristics and outcome in relation to age
-
Winchester DP, Osteen RT, Menck HR: The National Cancer Data Base report on breast carcinoma characteristics and outcome in relation to age. Cancer 1996, 78:1838-1843.
-
(1996)
Cancer
, vol.78
, pp. 1838-1843
-
-
Winchester, D.P.1
Osteen, R.T.2
Menck, H.R.3
-
54
-
-
0022455625
-
The relation between survival and age at diagnosis in breast cancer
-
Adami HO, Malker B, Holmberg L, Persson I, Stone B: The relation between survival and age at diagnosis in breast cancer. N Engl J Med 1986, 315:559-563.
-
(1986)
N Engl J Med
, vol.315
, pp. 559-563
-
-
Adami, H.O.1
Malker, B.2
Holmberg, L.3
Persson, I.4
Stone, B.5
-
55
-
-
70450184089
-
Breast cancer in young women: Poor survival despite intensive treatment
-
Fredholm H, Eaker S, Frisell J, Holmberg L, Fredriksson I, Lindman H: Breast cancer in young women: poor survival despite intensive treatment. PLoS One 2009, 4:e7695.
-
(2009)
PLoS One
, vol.4
, pp. e7695
-
-
Fredholm, H.1
Eaker, S.2
Frisell, J.3
Holmberg, L.4
Fredriksson, I.5
Lindman, H.6
-
56
-
-
78649331679
-
Breast cancer in elderly compared to younger patients in the Netherlands: Stage at diagnosis, treatment and survival in 127,805 unselected patients
-
Bastiaannet E, Liefers GJ, de Craen AJ, Kuppen PJ, van de Water W, Portielje JE, van der Geest LG, Janssen-Heijnen ML, Dekkers OM, van de Velde CJ, Westendorp RG: Breast cancer in elderly compared to younger patients in the Netherlands: stage at diagnosis, treatment and survival in 127,805 unselected patients. Breast Cancer Res Treat 2010, 124:801-807.
-
(2010)
Breast Cancer Res Treat
, vol.124
, pp. 801-807
-
-
Bastiaannet, E.1
Liefers, G.J.2
De Craen, A.J.3
Kuppen, P.J.4
Van De Water, W.5
Portielje, J.E.6
Van Der Geest, L.G.7
Janssen-Heijnen, M.L.8
Dekkers, O.M.9
Van De Velde, C.J.10
Westendorp, R.G.11
-
57
-
-
39649114334
-
Competing causes of death from a randomized trial of extended adjuvant endocrine therapy for breast cancer
-
Chapman JA, Meng D, Shepherd L, Parulekar W, Ingle JN, Muss HB, Palmer M, Yu C, Goss PE: Competing causes of death from a randomized trial of extended adjuvant endocrine therapy for breast cancer. J Natl Cancer Inst 2008, 100:252-260.
-
(2008)
J Natl Cancer Inst
, vol.100
, pp. 252-260
-
-
Chapman, J.A.1
Meng, D.2
Shepherd, L.3
Parulekar, W.4
Ingle, J.N.5
Muss, H.B.6
Palmer, M.7
Yu, C.8
Goss, P.E.9
-
58
-
-
4444315066
-
Probabilities of death from breast cancer and other causes among female breast cancer patients
-
Schairer C, Mink PJ, Carroll L, Devesa SS: Probabilities of death from breast cancer and other causes among female breast cancer patients. J Natl Cancer Inst 2004, 96:1311-1321.
-
(2004)
J Natl Cancer Inst
, vol.96
, pp. 1311-1321
-
-
Schairer, C.1
Mink, P.J.2
Carroll, L.3
Devesa, S.S.4
-
59
-
-
42049092638
-
Competing causes of death for women with breast cancer and change over time from 1975 to 2003
-
Du XL, Fox EE, Lai D: Competing causes of death for women with breast cancer and change over time from 1975 to 2003. Am J Clin Oncol 2008, 31:105-116.
-
(2008)
Am J Clin Oncol
, vol.31
, pp. 105-116
-
-
Du, X.L.1
Fox, E.E.2
Lai, D.3
-
60
-
-
0037478605
-
Repeated observation of breast tumor subtypes in independent gene expression data sets
-
Sorlie T, Tibshirani R, Parker J, Hastie T, Marron JS, Nobel A, Deng S, Johnsen H, Pesich R, Geisler S, Demeter J, Perou CM, Lønning PE, Brown PO, Børresen-Dale AL, Botstein D: Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci U S A 2003, 100:8418-8423.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 8418-8423
-
-
Sorlie, T.1
Tibshirani, R.2
Parker, J.3
Hastie, T.4
Marron, J.S.5
Nobel, A.6
Deng, S.7
Johnsen, H.8
Pesich, R.9
Geisler, S.10
Demeter, J.11
Perou, C.M.12
Lønning, P.E.13
Brown, P.O.14
Børresen-Dale, A.L.15
Botstein, D.16
-
61
-
-
0042838307
-
Breast cancer classification and prognosis based on gene expression profiles from a population-based study
-
Sotiriou C, Neo SY, McShane LM, Korn EL, Long PM, Jazaeri A, Martiat P, Fox SB, Harris AL, Liu ET: Breast cancer classification and prognosis based on gene expression profiles from a population-based study. Proc Natl Acad Sci U S A 2003, 100:10393-10398.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 10393-10398
-
-
Sotiriou, C.1
Neo, S.Y.2
McShane, L.M.3
Korn, E.L.4
Long, P.M.5
Jazaeri, A.6
Martiat, P.7
Fox, S.B.8
Harris, A.L.9
Liu, E.T.10
-
62
-
-
84856283173
-
MiR-31 and its host gene lncRNA LOC554202 are regulated by promoter hypermethylation in triple-negative breast cancer
-
Augoff K, McCue B, Plow EF, Sossey-Alaoui K: miR-31 and its host gene lncRNA LOC554202 are regulated by promoter hypermethylation in triple-negative breast cancer. Mol Cancer 2012, 11:5.
-
(2012)
Mol Cancer
, vol.11
, pp. 5
-
-
Augoff, K.1
McCue, B.2
Plow, E.F.3
Sossey-Alaoui, K.4
-
63
-
-
49449117338
-
Antisense transcripts are targets for activating small RNAs
-
Schwartz JC, Younger ST, Nguyen NB, Hardy DB, Monia BP, Corey DR, Janowski BA: Antisense transcripts are targets for activating small RNAs. Nat Struct Mol Biol 2008, 15:842-848.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 842-848
-
-
Schwartz, J.C.1
Younger, S.T.2
Nguyen, N.B.3
Hardy, D.B.4
Monia, B.P.5
Corey, D.R.6
Janowski, B.A.7
|