-
1
-
-
0021440581
-
Instrument database system and application to mass spectrometry/mass spectrometry
-
Crawford RW, Brand HR, Wong CM, Gregg HR, Hoffman PA, Enke CG. Instrument database system and application to mass spectrometry/mass spectrometry. Anal Chem. 1984; 56:1121–1127.
-
(1984)
Anal Chem
, vol.56
, pp. 1121-1127
-
-
Crawford, R.W.1
Brand, H.R.2
Wong, C.M.3
Gregg, H.R.4
Hoffman, P.A.5
Enke, C.G.6
-
2
-
-
0022602347
-
A spectral matching system for MS/MS data
-
Cross K, Enke C. A spectral matching system for MS/MS data. Comput Chem. 1986; 10:175–181.
-
(1986)
Comput Chem
, vol.10
, pp. 175-181
-
-
Cross, K.1
Enke, C.2
-
3
-
-
0019882891
-
Tandem mass spectrometry
-
McLafferty FW. Tandem mass spectrometry. Science. 1981; 214:280–287.
-
(1981)
Science
, vol.214
, pp. 280-287
-
-
McLafferty, F.W.1
-
5
-
-
84865769818
-
Mass spectral reference libraries: an ever-expanding resource for chemical identification
-
Stein S. Mass spectral reference libraries: an ever-expanding resource for chemical identification. Anal Chem. 2012; 84:7274–7282.
-
(2012)
Anal Chem
, vol.84
, pp. 7274-7282
-
-
Stein, S.1
-
6
-
-
84973384970
-
Open-access metabolomics databases for natural product research: present capabilities and future potential
-
322
-
Johnson SR, Lange BM. Open-access metabolomics databases for natural product research: present capabilities and future potential. Front Bioeng Biotechnol. 2015;3:22. https://doi.org/10.3389/fbioe.2015.00022.eCollection2015
-
(2015)
Front Bioeng Biotechnol
-
-
Johnson, S.R.1
Lange, B.M.2
-
7
-
-
84965146489
-
Mass spectral libraries: a statistical review of the visible use
-
Milman BL, Zhurkovich IK. Mass spectral libraries: a statistical review of the visible use. Trends Anal Chem. 2016; 80:636–640.
-
(2016)
Trends Anal Chem
, vol.80
, pp. 636-640
-
-
Milman, B.L.1
Zhurkovich, I.K.2
-
8
-
-
84907015010
-
Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry
-
Cajka T, Fiehn O. Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry. Trends Anal Chem. 2014; 61:192–206.
-
(2014)
Trends Anal Chem
, vol.61
, pp. 192-206
-
-
Cajka, T.1
Fiehn, O.2
-
9
-
-
84957096258
-
Mass spectral databases for LC/MS and GC/MS-based metabolomics: State of the field and future prospects
-
Vinaixa M, Schymanski EL, Neumann S, Navarro M, Salek RM, Yanes O. Mass spectral databases for LC/MS and GC/MS-based metabolomics: State of the field and future prospects. TrAC Trends Anal Chem. 2015; 78:23–35.
-
(2015)
TrAC Trends Anal Chem
, vol.78
, pp. 23-35
-
-
Vinaixa, M.1
Schymanski, E.L.2
Neumann, S.3
Navarro, M.4
Salek, R.M.5
Yanes, O.6
-
10
-
-
84877122175
-
Liquid chromatography-mass spectrometry in metabolomics research: mass analyzers in ultra high pressure liquid chromatography coupling
-
Forcisi S, Moritz F, Kanawati B, Tziotis D, Lehmann R, Schmitt-Kopplin P. Liquid chromatography-mass spectrometry in metabolomics research: mass analyzers in ultra high pressure liquid chromatography coupling. J Chromatogr A. 2013; 1292:51–65.
-
(2013)
J Chromatogr A
, vol.1292
, pp. 51-65
-
-
Forcisi, S.1
Moritz, F.2
Kanawati, B.3
Tziotis, D.4
Lehmann, R.5
Schmitt-Kopplin, P.6
-
11
-
-
84959562694
-
Spectral library searching in proteomics
-
16
-
Griss J. Spectral library searching in proteomics. Proteomics. 2016;16. https://doi.org/10.1002/pmic.201500296
-
(2016)
Proteomics
-
-
Griss, J.1
-
12
-
-
48249092350
-
Overview of tandem mass spectrometry (MS/MS) database search algorithms
-
Kapp E, Schütz F. Overview of tandem mass spectrometry (MS/MS) database search algorithms. Curr Protoc Protein Sci. 2001. https://doi.org/10.1002/0471140864.ps2502s49
-
(2001)
Curr Protoc Protein Sci
-
-
Kapp, E.1
Schütz, F.2
-
13
-
-
84957864457
-
Pivotal role of computers and software in mass spectrometry–SEQUEST and 20 years of tandem MS database searching
-
Yates JR, III. Pivotal role of computers and software in mass spectrometry–SEQUEST and 20 years of tandem MS database searching. J Am Soc Mass Spectrom. 2015; 26:1804–1813.
-
(2015)
J Am Soc Mass Spectrom
, vol.26
, pp. 1804-1813
-
-
Yates, J.R.1
-
14
-
-
84930182757
-
Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics
-
Vaniya A, Fiehn O. Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics. Trends Anal Chem. 2015; 69:52–61.
-
(2015)
Trends Anal Chem
, vol.69
, pp. 52-61
-
-
Vaniya, A.1
Fiehn, O.2
-
15
-
-
84866309522
-
Recent developments in liquid chromatography-mass spectrometry and related techniques
-
Holčapek M, Jirásko R, Lísa M. Recent developments in liquid chromatography-mass spectrometry and related techniques. J Chromatogr A. 2012; 1259:3–15.
-
(2012)
J Chromatogr A
, vol.1259
, pp. 3-15
-
-
Holčapek, M.1
Jirásko, R.2
Lísa, M.3
-
16
-
-
45949121806
-
The ideal mass analyzer: fact or fiction
-
Brunnée C. The ideal mass analyzer: fact or fiction? Int J Mass Spectrom. 1987; 76:125–237.
-
(1987)
Int J Mass Spectrom
, vol.76
, pp. 125-237
-
-
Brunnée, C.1
-
17
-
-
39149087366
-
Hybrid mass spectrometers for tandem mass spectrometry
-
Glish GL, Burinsky DJ. Hybrid mass spectrometers for tandem mass spectrometry. J Am Soc Mass Spectrom. 2008; 19:161–172.
-
(2008)
J Am Soc Mass Spectrom
, vol.19
, pp. 161-172
-
-
Glish, G.L.1
Burinsky, D.J.2
-
18
-
-
84878646185
-
Advances in ultrasensitive mass spectrometry of organic molecules
-
Kandiah M, Urban PL. Advances in ultrasensitive mass spectrometry of organic molecules. Chem Soc Rev. 2013; 42:5299–5322.
-
(2013)
Chem Soc Rev
, vol.42
, pp. 5299-5322
-
-
Kandiah, M.1
Urban, P.L.2
-
19
-
-
79956281118
-
Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing
-
Weckwerth W. Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing. Anal Bioanal Chem. 2011; 400:1967.
-
(2011)
Anal Bioanal Chem
, vol.400
, pp. 1967
-
-
Weckwerth, W.1
-
20
-
-
48749115768
-
Mass spectrometry for the identification of the discriminating signals from metabolomics: current status and future trends
-
Werner E, Heilier J-F, Ducruix C, Ezan E, Junot C, Tabet J-C. Mass spectrometry for the identification of the discriminating signals from metabolomics: current status and future trends. J Chromatogr B. 2008; 871:143–163.
-
(2008)
J Chromatogr B
, vol.871
, pp. 143-163
-
-
Werner, E.1
Heilier, J.-F.2
Ducruix, C.3
Ezan, E.4
Junot, C.5
Tabet, J.-C.6
-
21
-
-
84929004305
-
High-speed MALDI MS/MS imaging mass spectrometry using continuous raster sampling
-
Prentice BM, Chumbley CW, Caprioli RM. High-speed MALDI MS/MS imaging mass spectrometry using continuous raster sampling. J Mass Spectrom. 2015; 50:703–710.
-
(2015)
J Mass Spectrom
, vol.50
, pp. 703-710
-
-
Prentice, B.M.1
Chumbley, C.W.2
Caprioli, R.M.3
-
22
-
-
84941880207
-
Gas chromatography coupled to atmospheric pressure ionization mass spectrometry (GC-API-MS): review
-
Li D-X, Gan L, Bronja A, Schmitz OJ. Gas chromatography coupled to atmospheric pressure ionization mass spectrometry (GC-API-MS): review. Anal Chim Acta. 2015; 891:43–61.
-
(2015)
Anal Chim Acta
, vol.891
, pp. 43-61
-
-
Li, D.-X.1
Gan, L.2
Bronja, A.3
Schmitz, O.J.4
-
23
-
-
84940971553
-
Atmospheric-pressure chemical ionization tandem mass spectrometry (APGC/MS/MS) an alternative to high-resolution mass spectrometry (HRGC/HRMS) for the determination of dioxins
-
Van Bavel B, Geng D, Cherta L, et al. Atmospheric-pressure chemical ionization tandem mass spectrometry (APGC/MS/MS) an alternative to high-resolution mass spectrometry (HRGC/HRMS) for the determination of dioxins. Anal Chem. 2015; 87:9047–9053.
-
(2015)
Anal Chem
, vol.87
, pp. 9047-9053
-
-
Van Bavel, B.1
Geng, D.2
Cherta, L.3
-
24
-
-
84878703813
-
Gas chromatography-high resolution tandem mass spectrometry using a GC-APPI-LIT orbitrap for complex volatile compounds analysis
-
Lee YJ, Smith EA, Jun JH. Gas chromatography-high resolution tandem mass spectrometry using a GC-APPI-LIT orbitrap for complex volatile compounds analysis. Mass Spectrom Lett. 2012; 3:29–38.
-
(2012)
Mass Spectrom Lett
, vol.3
, pp. 29-38
-
-
Lee, Y.J.1
Smith, E.A.2
Jun, J.H.3
-
25
-
-
84879473538
-
High energy collisions on tandem time-of-flight mass spectrometers
-
Cotter RJ. High energy collisions on tandem time-of-flight mass spectrometers. J Am Soc Mass Spectrom. 2013; 24:657–674.
-
(2013)
J Am Soc Mass Spectrom
, vol.24
, pp. 657-674
-
-
Cotter, R.J.1
-
26
-
-
6944233454
-
Ion activation methods for tandem mass spectrometry
-
Sleno L, Volmer DA. Ion activation methods for tandem mass spectrometry. J Mass Spectrom. 2004; 39:1091–1112.
-
(2004)
J Mass Spectrom
, vol.39
, pp. 1091-1112
-
-
Sleno, L.1
Volmer, D.A.2
-
27
-
-
84954390455
-
Mass spectrometry imaging and structural analysis of lipids directly on tissue specimens by using a spiral orbit type tandem time-of-flight mass spectrometer, spiral TOF-TOF
-
A0013
-
Satoh T, Kubo A, Shimma S, Toyoda M. Mass spectrometry imaging and structural analysis of lipids directly on tissue specimens by using a spiral orbit type tandem time-of-flight mass spectrometer, spiral TOF-TOF. Mass Spectrom (Tokyo). 2012; 1. A0013. https://doi.org/10.5702/massspectrometry.A0013.Epub2012Nov16
-
(2012)
Mass Spectrom (Tokyo)
, vol.1
-
-
Satoh, T.1
Kubo, A.2
Shimma, S.3
Toyoda, M.4
-
28
-
-
80052790699
-
An isomer-specific high-energy collision-induced dissociation MS/MS database for forensic applications: a proof-of-concept on chemical warfare agent markers
-
Subramaniam R, Östin A, Nygren Y, Juhlin L, Nilsson C, Åstot C. An isomer-specific high-energy collision-induced dissociation MS/MS database for forensic applications: a proof-of-concept on chemical warfare agent markers. J Mass Spectrom. 2011; 46:917–924.
-
(2011)
J Mass Spectrom
, vol.46
, pp. 917-924
-
-
Subramaniam, R.1
Östin, A.2
Nygren, Y.3
Juhlin, L.4
Nilsson, C.5
Åstot, C.6
-
29
-
-
0034795407
-
Tuning compounds for electrospray ionization/in-source collision-induced dissociation and mass spectra library searching
-
Weinmann W, Stoertzel M, Vogt S, Svoboda M, Schreiber A. Tuning compounds for electrospray ionization/in-source collision-induced dissociation and mass spectra library searching. J Mass Spectrom. 2001; 36:1013–1023.
-
(2001)
J Mass Spectrom
, vol.36
, pp. 1013-1023
-
-
Weinmann, W.1
Stoertzel, M.2
Vogt, S.3
Svoboda, M.4
Schreiber, A.5
-
30
-
-
84986850849
-
Tandem mass spectrometry (MS/MS) instrumentation
-
Yost RA, Fetterolf DD. Tandem mass spectrometry (MS/MS) instrumentation. Mass Spectrom Rev. 1983; 2:1–45.
-
(1983)
Mass Spectrom Rev
, vol.2
, pp. 1-45
-
-
Yost, R.A.1
Fetterolf, D.D.2
-
31
-
-
0037080141
-
Effects of fragile ions on mass resolution and on isolation for tandem mass spectrometry in the quadrupole ion trap mass spectrometer
-
McClellan JE, Murphy JP, Mulholland JJ, Yost RA. Effects of fragile ions on mass resolution and on isolation for tandem mass spectrometry in the quadrupole ion trap mass spectrometer. Anal Chem. 2002; 74:402–412.
-
(2002)
Anal Chem
, vol.74
, pp. 402-412
-
-
McClellan, J.E.1
Murphy, J.P.2
Mulholland, J.J.3
Yost, R.A.4
-
32
-
-
29744460317
-
High amplitude short time excitation: a method to form and detect low mass product ions in a quadrupole ion trap mass spectrometer
-
Cunningham C, Jr, Glish GL, Burinsky DJ. High amplitude short time excitation: a method to form and detect low mass product ions in a quadrupole ion trap mass spectrometer. J Am Soc Mass Spectrom. 2006; 17:81–84.
-
(2006)
J Am Soc Mass Spectrom
, vol.17
, pp. 81-84
-
-
Cunningham, C.1
Glish, G.L.2
Burinsky, D.J.3
-
33
-
-
0031010426
-
Slow heating methods in tandem mass spectrometry
-
McLuckey SA, Goeringer DE. Slow heating methods in tandem mass spectrometry. J Mass Spectrom. 1997; 32:461–474.
-
(1997)
J Mass Spectrom
, vol.32
, pp. 461-474
-
-
McLuckey, S.A.1
Goeringer, D.E.2
-
34
-
-
84960090318
-
Fragmentation reactions using electrospray ionization mass spectrometry: an important tool for the structural elucidation and characterization of synthetic and natural products
-
Demarque DP, Crotti AE, Vessecchi R, Lopes JL, Lopes NP. Fragmentation reactions using electrospray ionization mass spectrometry: an important tool for the structural elucidation and characterization of synthetic and natural products. Nat Prod Rep. 2016; 33:432–455.
-
(2016)
Nat Prod Rep
, vol.33
, pp. 432-455
-
-
Demarque, D.P.1
Crotti, A.E.2
Vessecchi, R.3
Lopes, J.L.4
Lopes, N.P.5
-
35
-
-
84946594373
-
Collision-induced dissociation mass spectrometry: a powerful tool for natural product structure elucidation
-
Johnson AR, Carlson EE. Collision-induced dissociation mass spectrometry: a powerful tool for natural product structure elucidation. ACS Publications. 2015; 87:10668–10678.
-
(2015)
ACS Publications
, vol.87
, pp. 10668-10678
-
-
Johnson, A.R.1
Carlson, E.E.2
-
36
-
-
84937393334
-
Evolution of orbitrap mass spectrometry instrumentation
-
Eliuk S, Makarov AA. Evolution of orbitrap mass spectrometry instrumentation. Ann Rev Anal Chem. 2015; 8:61–80.
-
(2015)
Ann Rev Anal Chem
, vol.8
, pp. 61-80
-
-
Eliuk, S.1
Makarov, A.A.2
-
37
-
-
84902141676
-
Comparison of the activation time effects and the internal energy distributions for the CID, PQD and HCD excitation modes
-
Ichou F, Schwarzenberg A, Lesage D, et al. Comparison of the activation time effects and the internal energy distributions for the CID, PQD and HCD excitation modes. J Mass Spectrom. 2014; 49:498–508.
-
(2014)
J Mass Spectrom
, vol.49
, pp. 498-508
-
-
Ichou, F.1
Schwarzenberg, A.2
Lesage, D.3
-
38
-
-
84979919048
-
Establishment of local searching methods for orbitrap-based high throughput metabolomics analysis
-
Tang H, Wang X, Xu L, et al. Establishment of local searching methods for orbitrap-based high throughput metabolomics analysis. Talanta. 2016; 156:163–171.
-
(2016)
Talanta
, vol.156
, pp. 163-171
-
-
Tang, H.1
Wang, X.2
Xu, L.3
-
39
-
-
79955078109
-
An experimental approach to enhance precursor ion fragmentation for metabolite identification studies: application of dual collision cells in an orbital trap
-
Bushee JL, Argikar UA. An experimental approach to enhance precursor ion fragmentation for metabolite identification studies: application of dual collision cells in an orbital trap. Rapid Commun Mass Spectrom. 2011; 25:1356–1362.
-
(2011)
Rapid Commun Mass Spectrom
, vol.25
, pp. 1356-1362
-
-
Bushee, J.L.1
Argikar, U.A.2
-
40
-
-
84941024177
-
A new strategy for MS/MS data acquisition applying multiple data dependent experiments on Orbitrap mass spectrometers in non-targeted metabolomic applications
-
Mullard G, Allwood JW, Weber R, et al. A new strategy for MS/MS data acquisition applying multiple data dependent experiments on Orbitrap mass spectrometers in non-targeted metabolomic applications. Metabolomics. 2015; 11:1068–1080.
-
(2015)
Metabolomics
, vol.11
, pp. 1068-1080
-
-
Mullard, G.1
Allwood, J.W.2
Weber, R.3
-
41
-
-
35448985017
-
Infrared multiphoton dissociation and electron-induced dissociation as alternative MS/MS strategies for metabolite identification
-
Yoo HJ, Liu H, Håkansson K. Infrared multiphoton dissociation and electron-induced dissociation as alternative MS/MS strategies for metabolite identification. Anal Chem. 2007; 79:7858–7866.
-
(2007)
Anal Chem
, vol.79
, pp. 7858-7866
-
-
Yoo, H.J.1
Liu, H.2
Håkansson, K.3
-
42
-
-
84949190268
-
Electron-induced dissociation (EID) for structure characterization of glycerophosphatidylcholine: determination of double-bond positions and localization of acyl chains
-
Jones JW, Thompson CJ, Carter CL, Kane MA. Electron-induced dissociation (EID) for structure characterization of glycerophosphatidylcholine: determination of double-bond positions and localization of acyl chains. J Mass Spectrom. 2015; 50:1327–1339.
-
(2015)
J Mass Spectrom
, vol.50
, pp. 1327-1339
-
-
Jones, J.W.1
Thompson, C.J.2
Carter, C.L.3
Kane, M.A.4
-
43
-
-
79952520637
-
Ion/neutral, ion/electron, ion/photon, and ion/ion interactions in tandem mass spectrometry: do we need them all? Are they enough
-
McLuckey SA, Mentinova M. Ion/neutral, ion/electron, ion/photon, and ion/ion interactions in tandem mass spectrometry: do we need them all? Are they enough? J Am Soc Mass Spectrom. 2011; 22:3–12.
-
(2011)
J Am Soc Mass Spectrom
, vol.22
, pp. 3-12
-
-
McLuckey, S.A.1
Mentinova, M.2
-
44
-
-
84882681487
-
An untargeted metabolomic workflow to improve structural characterization of metabolites
-
Nikolskiy I, Mahieu NG, Chen Y-J, Tautenhahn R, Patti GJ. An untargeted metabolomic workflow to improve structural characterization of metabolites. Anal Chem. 2013; 85:7713–7719.
-
(2013)
Anal Chem
, vol.85
, pp. 7713-7719
-
-
Nikolskiy, I.1
Mahieu, N.G.2
Chen, Y.-J.3
Tautenhahn, R.4
Patti, G.J.5
-
45
-
-
84877813399
-
Selectivity of LC-MS/MS analysis: implication for proteomics experiments
-
Gallien S, Duriez E, Demeure K, Domon B. Selectivity of LC-MS/MS analysis: implication for proteomics experiments. J Proteomics. 2013; 81:148–158.
-
(2013)
J Proteomics
, vol.81
, pp. 148-158
-
-
Gallien, S.1
Duriez, E.2
Demeure, K.3
Domon, B.4
-
46
-
-
84937937624
-
Applying ‘Sequential Windowed Acquisition of All Theoretical Fragment Ion Mass Spectra’ (SWATH) for systematic toxicological analysis with liquid chromatography-high-resolution tandem mass spectrometry
-
Arnhard K, Gottschall A, Pitterl F, Oberacher H. Applying ‘Sequential Windowed Acquisition of All Theoretical Fragment Ion Mass Spectra’ (SWATH) for systematic toxicological analysis with liquid chromatography-high-resolution tandem mass spectrometry. Anal Bioanal Chem. 2015; 407:405–414.
-
(2015)
Anal Bioanal Chem
, vol.407
, pp. 405-414
-
-
Arnhard, K.1
Gottschall, A.2
Pitterl, F.3
Oberacher, H.4
-
47
-
-
85016348064
-
-
Recent developments in liquid chromatography–mass spectrometry. Mass spectrometry for the analysis of pesticide residues and their metabolites., Hoboken, NJ, John Wiley & Sons, In
-
Lacorte S, Agüera A, Cortina-Puig M, Gómez-Canela C. 2015. Recent developments in liquid chromatography–mass spectrometry. Mass spectrometry for the analysis of pesticide residues and their metabolites. Hoboken, NJ: John Wiley & Sons, Inc. 131–159.
-
(2015)
, pp. 131-159
-
-
Lacorte, S.1
Agüera, A.2
Cortina-Puig, M.3
Gómez-Canela, C.4
-
48
-
-
84922463714
-
Autonomous metabolomics for rapid metabolite identification in global profiling
-
Benton HP, Ivanisevic J, Mahieu NG, et al. Autonomous metabolomics for rapid metabolite identification in global profiling. Anal Chem. 2014; 87:884–891.
-
(2014)
Anal Chem
, vol.87
, pp. 884-891
-
-
Benton, H.P.1
Ivanisevic, J.2
Mahieu, N.G.3
-
49
-
-
84908503823
-
High resolution mass spectrometry based techniques at the crossroads of metabolic pathways
-
Junot C, Fenaille F, Colsch B, Bécher F. High resolution mass spectrometry based techniques at the crossroads of metabolic pathways. Mass Spectrom Rev. 2014; 33:471–500.
-
(2014)
Mass Spectrom Rev
, vol.33
, pp. 471-500
-
-
Junot, C.1
Fenaille, F.2
Colsch, B.3
Bécher, F.4
-
50
-
-
84863393526
-
Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes
-
O111.013698
-
Michalski A, Damoc E, Lange O, et al. Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes. Mol Cell Proteomics. 2012; 11:O111.013698.
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Michalski, A.1
Damoc, E.2
Lange, O.3
-
51
-
-
84930645496
-
A comprehensive quantification method for eicosanoids and related compounds by using liquid chromatography/mass spectrometry with high speed continuous ionization polarity switching
-
Yamada M, Kita Y, Kohira T, et al. A comprehensive quantification method for eicosanoids and related compounds by using liquid chromatography/mass spectrometry with high speed continuous ionization polarity switching. J Chromatogr B. 2015; 995:74–84.
-
(2015)
J Chromatogr B
, vol.995
, pp. 74-84
-
-
Yamada, M.1
Kita, Y.2
Kohira, T.3
-
52
-
-
85049066286
-
Optimization of data acquisition and sample preparation methods for LC-MS urine metabolomic analysis
-
Skibiński R, Komsta Ł. Optimization of data acquisition and sample preparation methods for LC-MS urine metabolomic analysis. Cancer Res. 2015; 1:3.
-
(2015)
Cancer Res
, vol.1
, pp. 3
-
-
Skibiński, R.1
Komsta, Ł.2
-
53
-
-
84954459129
-
Increasing lipidomic coverage by selecting optimal mobile-phase modifiers in LC-MS of blood plasma
-
Cajka T, Fiehn O. Increasing lipidomic coverage by selecting optimal mobile-phase modifiers in LC-MS of blood plasma. Metabolomics. 2016; 12:34.
-
(2016)
Metabolomics
, vol.12
, pp. 34
-
-
Cajka, T.1
Fiehn, O.2
-
54
-
-
18844425931
-
High-sensitivity ion mobility spectrometry/mass spectrometry using electrodynamic ion funnel interfaces
-
Tang K, Shvartsburg AA, Lee H-N, et al. High-sensitivity ion mobility spectrometry/mass spectrometry using electrodynamic ion funnel interfaces. Anal Chem. 2005; 77:3330–3339.
-
(2005)
Anal Chem
, vol.77
, pp. 3330-3339
-
-
Tang, K.1
Shvartsburg, A.A.2
Lee, H.-N.3
-
55
-
-
85016501386
-
Large-scale prediction of collision cross-section values for metabolites in ion mobility-mass spectrometry
-
Zhou Z, Shen X, Tu J, Zhu Z-J. Large-scale prediction of collision cross-section values for metabolites in ion mobility-mass spectrometry. Anal Chem. 2016; 88:11084–11091.
-
(2016)
Anal Chem
, vol.88
, pp. 11084-11091
-
-
Zhou, Z.1
Shen, X.2
Tu, J.3
Zhu, Z.-J.4
-
56
-
-
84872658706
-
Assigning precursor-product ion relationships in indiscriminant MS/MS data from non-targeted metabolite profiling studies
-
Broeckling CD, Heuberger AL, Prince JA, Ingelsson E, Prenni JE. Assigning precursor-product ion relationships in indiscriminant MS/MS data from non-targeted metabolite profiling studies. Metabolomics. 2013; 9:33–43.
-
(2013)
Metabolomics
, vol.9
, pp. 33-43
-
-
Broeckling, C.D.1
Heuberger, A.L.2
Prince, J.A.3
Ingelsson, E.4
Prenni, J.E.5
-
57
-
-
84892759900
-
Comparison of information-dependent acquisition, SWATH, and MSAll techniques in metabolite identification study employing ultrahigh-performance liquid chromatography–quadrupole time-of-flight mass spectrometry
-
Zhu X, Chen Y, Subramanian R. Comparison of information-dependent acquisition, SWATH, and MSAll techniques in metabolite identification study employing ultrahigh-performance liquid chromatography–quadrupole time-of-flight mass spectrometry. Anal Chem. 2014; 86:1202–1209.
-
(2014)
Anal Chem
, vol.86
, pp. 1202-1209
-
-
Zhu, X.1
Chen, Y.2
Subramanian, R.3
-
58
-
-
84861860481
-
Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis
-
O111.016717
-
Gillet LC, Navarro P, Tate S, et al. Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis. Mol Cell Proteomics. 2012; 11:O111.016717.
-
(2012)
Mol Cell Proteomics
, vol.11
-
-
Gillet, L.C.1
Navarro, P.2
Tate, S.3
-
59
-
-
84953738781
-
Toward merging untargeted and targeted methods in mass spectrometry-based metabolomics and lipidomics
-
Cajka T, Fiehn O. Toward merging untargeted and targeted methods in mass spectrometry-based metabolomics and lipidomics. Anal Chem. 2015; 88:524–545.
-
(2015)
Anal Chem
, vol.88
, pp. 524-545
-
-
Cajka, T.1
Fiehn, O.2
-
60
-
-
84930181342
-
MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis
-
Tsugawa H, Cajka T, Kind T, et al. MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis. Nat Methods. 2015; 12:523–526.
-
(2015)
Nat Methods
, vol.12
, pp. 523-526
-
-
Tsugawa, H.1
Cajka, T.2
Kind, T.3
-
61
-
-
84898665956
-
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data
-
Röst HL, Rosenberger G, Navarro P, et al. OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data. Nat Biotechnol. 2014; 32:219–223.
-
(2014)
Nat Biotechnol
, vol.32
, pp. 219-223
-
-
Röst, H.L.1
Rosenberger, G.2
Navarro, P.3
-
62
-
-
84928999619
-
DIANA—algorithmic improvements for analysis of data-independent acquisition MS data
-
Teleman J, Röst HL, Rosenberger G, et al. DIANA—algorithmic improvements for analysis of data-independent acquisition MS data. Bioinformatics. 2015; 31:555–562.
-
(2015)
Bioinformatics
, vol.31
, pp. 555-562
-
-
Teleman, J.1
Röst, H.L.2
Rosenberger, G.3
-
63
-
-
84915747340
-
Hybrid data acquisition and processing strategies with increased throughput and selectivity: pSMART analysis for global qualitative and quantitative analysis
-
Prakash A, Peterman S, Ahmad S, et al. Hybrid data acquisition and processing strategies with increased throughput and selectivity: pSMART analysis for global qualitative and quantitative analysis. J Proteome Res. 2014; 13:5415–5430.
-
(2014)
J Proteome Res
, vol.13
, pp. 5415-5430
-
-
Prakash, A.1
Peterman, S.2
Ahmad, S.3
-
64
-
-
84923838580
-
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics
-
Tsou C-C, Avtonomov D, Larsen B, et al. DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics. Nat Methods. 2015; 12:258–264.
-
(2015)
Nat Methods
, vol.12
, pp. 258-264
-
-
Tsou, C.-C.1
Avtonomov, D.2
Larsen, B.3
-
65
-
-
84958103275
-
Ion-molecule adduct formation in tandem mass spectrometry
-
Alechaga É, Moyano E, Galceran MT. Ion-molecule adduct formation in tandem mass spectrometry. Anal Bioanal Chem. 2016; 408:1269–1277.
-
(2016)
Anal Bioanal Chem
, vol.408
, pp. 1269-1277
-
-
Alechaga, É.1
Moyano, E.2
Galceran, M.T.3
-
66
-
-
84866355208
-
Enhancing the power of liquid chromatography-mass spectrometry-based urine metabolomics in negative ion mode by optimization of the additive
-
Zhang X, Clausen MR, Zhao X, Zheng H, Bertram HC. Enhancing the power of liquid chromatography-mass spectrometry-based urine metabolomics in negative ion mode by optimization of the additive. Anal Chem. 2012; 84:7785–7792.
-
(2012)
Anal Chem
, vol.84
, pp. 7785-7792
-
-
Zhang, X.1
Clausen, M.R.2
Zhao, X.3
Zheng, H.4
Bertram, H.C.5
-
67
-
-
84922575020
-
Lipid blast templates as flexible tools for creating new in-silico tandem mass spectral libraries
-
Kind T, Okazaki Y, Saito K, Fiehn O. Lipid blast templates as flexible tools for creating new in-silico tandem mass spectral libraries. Anal Chem. 2014; 86:11024–11027.
-
(2014)
Anal Chem
, vol.86
, pp. 11024-11027
-
-
Kind, T.1
Okazaki, Y.2
Saito, K.3
Fiehn, O.4
-
68
-
-
84947485234
-
An in silico MS/MS library for automatic annotation of novel FAHFA lipids
-
Ma Y, Kind T, Vaniya A, Gennity I, Fahrmann JF, Fiehn O. An in silico MS/MS library for automatic annotation of novel FAHFA lipids. J Cheminform. 2015; 7:53.
-
(2015)
J Cheminform
, vol.7
, pp. 53
-
-
Ma, Y.1
Kind, T.2
Vaniya, A.3
Gennity, I.4
Fahrmann, J.F.5
Fiehn, O.6
-
69
-
-
84973639304
-
Greazy: open-source software for automated phospholipid MS/MS identification
-
Kochen MA, Chambers MC, Holman JD, et al. Greazy: open-source software for automated phospholipid MS/MS identification. Anal Chem. 2016; 88:5733–5741.
-
(2016)
Anal Chem
, vol.88
, pp. 5733-5741
-
-
Kochen, M.A.1
Chambers, M.C.2
Holman, J.D.3
-
70
-
-
84926363137
-
Competitive fragmentation modeling of ESI-MS/MS spectra for putative metabolite identification
-
Allen F, Greiner R, Wishart D. Competitive fragmentation modeling of ESI-MS/MS spectra for putative metabolite identification. Metabolomics. 2014; 11:98–110.
-
(2014)
Metabolomics
, vol.11
, pp. 98-110
-
-
Allen, F.1
Greiner, R.2
Wishart, D.3
-
71
-
-
84904810329
-
CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra
-
Allen F, Pon A, Wilson M, Greiner R, Wishart D. CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra. Nucleic Acids Res. 2014; 42:W94–W99.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. W94-W99
-
-
Allen, F.1
Pon, A.2
Wilson, M.3
Greiner, R.4
Wishart, D.5
-
72
-
-
84961218887
-
Integration of molecular networking and in-silico MS/MS fragmentation for natural products dereplication
-
Allard P-M, Péresse T, Bisson J, et al. Integration of molecular networking and in-silico MS/MS fragmentation for natural products dereplication. Anal Chem. 2016; 88:3317–3323.
-
(2016)
Anal Chem
, vol.88
, pp. 3317-3323
-
-
Allard, P.-M.1
Péresse, T.2
Bisson, J.3
-
73
-
-
84971643970
-
How to compute electron ionization mass spectra from first principles
-
Bauer CA, Grimme S. How to compute electron ionization mass spectra from first principles. J Phys Chem A. 2016; 120:3755–3766.
-
(2016)
J Phys Chem A
, vol.120
, pp. 3755-3766
-
-
Bauer, C.A.1
Grimme, S.2
-
74
-
-
84988585423
-
Quantum chemical mass spectrometry: ab initio prediction of electron ionization mass spectra and identification of new fragmentation pathways
-
Cautereels J, Claeys M, Geldof D, Blockhuys F. Quantum chemical mass spectrometry: ab initio prediction of electron ionization mass spectra and identification of new fragmentation pathways. J Mass Spectrom. 2016; 51:602–614.
-
(2016)
J Mass Spectrom
, vol.51
, pp. 602-614
-
-
Cautereels, J.1
Claeys, M.2
Geldof, D.3
Blockhuys, F.4
-
75
-
-
84878742600
-
Towards first principles calculation of electron impact mass spectra of molecules
-
Grimme S. Towards first principles calculation of electron impact mass spectra of molecules. Angew Chem Int Ed Engl. 2013; 52:6306–6312.
-
(2013)
Angew Chem Int Ed Engl
, vol.52
, pp. 6306-6312
-
-
Grimme, S.1
-
76
-
-
84926363137
-
Competitive fragmentation modeling of ESI-MS/MS spectra for putative metabolite identification
-
Allen F, Greiner R, Wishart D. Competitive fragmentation modeling of ESI-MS/MS spectra for putative metabolite identification. Metabolomics. 2015; 11:98–110.
-
(2015)
Metabolomics
, vol.11
, pp. 98-110
-
-
Allen, F.1
Greiner, R.2
Wishart, D.3
-
77
-
-
84940036737
-
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics
-
Jeffryes JG, Colastani RL, Elbadawi-Sidhu M, et al. MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics. J Cheminform. 2015; 7:1.
-
(2015)
J Cheminform
, vol.7
, pp. 1
-
-
Jeffryes, J.G.1
Colastani, R.L.2
Elbadawi-Sidhu, M.3
-
78
-
-
84884555187
-
In silico enzymatic synthesis of a 400 000 compound biochemical database for nontargeted metabolomics
-
Menikarachchi LC, Hill DW, Hamdalla MA, Mandoiu II, Grant DF. In silico enzymatic synthesis of a 400 000 compound biochemical database for nontargeted metabolomics. J Chem Inf Model. 2013; 53:2483–2492.
-
(2013)
J Chem Inf Model
, vol.53
, pp. 2483-2492
-
-
Menikarachchi, L.C.1
Hill, D.W.2
Hamdalla, M.A.3
Mandoiu, I.I.4
Grant, D.F.5
-
79
-
-
84945249632
-
MyCompoundID MS/MS Search: metabolite identification using a library of predicted fragment-ion-spectra of 383,830 possible human metabolites
-
Huan T, Tang C, Li R, Shi Y, Lin G, Li L. MyCompoundID MS/MS Search: metabolite identification using a library of predicted fragment-ion-spectra of 383,830 possible human metabolites. Anal Chem. 2015; 87:10619–10626.
-
(2015)
Anal Chem
, vol.87
, pp. 10619-10626
-
-
Huan, T.1
Tang, C.2
Li, R.3
Shi, Y.4
Lin, G.5
Li, L.6
-
80
-
-
0033425901
-
The critical evaluation of a comprehensive mass spectral library
-
Ausloos P, Clifton C, Lias S, et al. The critical evaluation of a comprehensive mass spectral library. J Am Soc Mass Spectrom. 1999; 10:287–299.
-
(1999)
J Am Soc Mass Spectrom
, vol.10
, pp. 287-299
-
-
Ausloos, P.1
Clifton, C.2
Lias, S.3
-
81
-
-
79958140993
-
Quality evaluation of tandem mass spectral libraries
-
Oberacher H, Weinmann W, Dresen S. Quality evaluation of tandem mass spectral libraries. Anal Bioanal Chem. 2011; 400:2641–2648.
-
(2011)
Anal Bioanal Chem
, vol.400
, pp. 2641-2648
-
-
Oberacher, H.1
Weinmann, W.2
Dresen, S.3
-
82
-
-
84903722562
-
Quality control for building libraries from electrospray ionization tandem mass spectra
-
Yang X, Neta P, Stein SE. Quality control for building libraries from electrospray ionization tandem mass spectra. Anal Chem. 2014; 86:6393–6400.
-
(2014)
Anal Chem
, vol.86
, pp. 6393-6400
-
-
Yang, X.1
Neta, P.2
Stein, S.E.3
-
83
-
-
85016237709
-
Mass spectral library quality assurance by inter-library comparison
-
Wallace WE, Ji W, Tchekhovskoi DV, Phinney KW, Stein SE. Mass spectral library quality assurance by inter-library comparison. J Am Soc Mass Spectrom. 2017; 28:733–738.
-
(2017)
J Am Soc Mass Spectrom
, vol.28
, pp. 733-738
-
-
Wallace, W.E.1
Ji, W.2
Tchekhovskoi, D.V.3
Phinney, K.W.4
Stein, S.E.5
-
84
-
-
85049105053
-
R for ProteomicsProteome informatics
-
Chapter 14
-
Breckels LM, Gibb S, Petyuk V, Gatto L. R for ProteomicsProteome informatics. Royal Soc Chem. 2016;321–364; Chapter 14. https://doi.org/10.1039/9781782626732
-
(2016)
Royal Soc Chem
, pp. 321-364
-
-
Breckels, L.M.1
Gibb, S.2
Petyuk, V.3
Gatto, L.4
-
85
-
-
84856104821
-
MSnbase—an R/bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation
-
Gatto L, Lilley KS. MSnbase—an R/bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation. Bioinformatics. 2012; 28:288–289.
-
(2012)
Bioinformatics
, vol.28
, pp. 288-289
-
-
Gatto, L.1
Lilley, K.S.2
-
86
-
-
85026789055
-
MsPurity: automated evaluation of precursor ion purity for mass spectrometry based fragmentation in metabolomics
-
Lawson TN, Weber RJM, Jones MR, et al. MsPurity: automated evaluation of precursor ion purity for mass spectrometry based fragmentation in metabolomics. Anal Chem. 2017; 89:2432–2439.
-
(2017)
Anal Chem
, vol.89
, pp. 2432-2439
-
-
Lawson, T.N.1
Weber, R.J.M.2
Jones, M.R.3
-
87
-
-
84872336476
-
Automatic recalibration and processing of tandem mass spectra using formula annotation
-
Stravs MA, Schymanski EL, Singer HP, Hollender J. Automatic recalibration and processing of tandem mass spectra using formula annotation. J Mass Spectrom. 2013; 48:89–99.
-
(2013)
J Mass Spectrom
, vol.48
, pp. 89-99
-
-
Stravs, M.A.1
Schymanski, E.L.2
Singer, H.P.3
Hollender, J.4
-
88
-
-
84977269777
-
SWATH mass spectrometry performance using extended peptide MS/MS assay libraries
-
Wu JX, Song X, Pascovici D, et al. SWATH mass spectrometry performance using extended peptide MS/MS assay libraries. Mol Cell Proteomics. 2016; 15:2501–2514.
-
(2016)
Mol Cell Proteomics
, vol.15
, pp. 2501-2514
-
-
Wu, J.X.1
Song, X.2
Pascovici, D.3
-
89
-
-
84904308686
-
RAMClust: a novel feature clustering method enables spectral-matching-based annotation for metabolomics data
-
Broeckling CD, Afsar F, Neumann S, Ben-Hur A, Prenni J. RAMClust: a novel feature clustering method enables spectral-matching-based annotation for metabolomics data. Anal Chem. 2014; 86:6812–6817.
-
(2014)
Anal Chem
, vol.86
, pp. 6812-6817
-
-
Broeckling, C.D.1
Afsar, F.2
Neumann, S.3
Ben-Hur, A.4
Prenni, J.5
-
90
-
-
46749093781
-
Towards a universal product ion mass spectral library-reproducibility of product ion spectra across eleven different mass spectrometers
-
Hopley C, Bristow T, Lubben A, et al. Towards a universal product ion mass spectral library-reproducibility of product ion spectra across eleven different mass spectrometers. Rapid Commun Mass Spectrom. 2008; 22:1779–1786.
-
(2008)
Rapid Commun Mass Spectrom
, vol.22
, pp. 1779-1786
-
-
Hopley, C.1
Bristow, T.2
Lubben, A.3
-
91
-
-
54949129419
-
ProteoWizard: open source software for rapid proteomics tools development
-
Kessner D, Chambers M, Burke R, Agus D, Mallick P. ProteoWizard: open source software for rapid proteomics tools development. Bioinformatics. 2008; 24:2534–2536.
-
(2008)
Bioinformatics
, vol.24
, pp. 2534-2536
-
-
Kessner, D.1
Chambers, M.2
Burke, R.3
Agus, D.4
Mallick, P.5
-
92
-
-
84876560030
-
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
-
41 D781-D786
-
Haug K, Salek RM, Conesa P, et al. MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data. Nucleic Acids Res. 20132;41: D781-D786.
-
(2013)
Nucleic Acids Res
-
-
Haug, K.1
Salek, R.M.2
Conesa, P.3
-
93
-
-
84976887093
-
Metabolomics workbench: an international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools
-
44 D463-D470
-
Sud M, Fahy E, Cotter D, et al. Metabolomics workbench: an international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools. Nucleic Acids Res. 2016;44: D463-D470.
-
(2016)
Nucleic Acids Res
-
-
Sud, M.1
Fahy, E.2
Cotter, D.3
-
94
-
-
84945979773
-
Evaluation of mass spectral library search algorithms implemented in commercial software
-
Samokhin A, Sotnezova K, Lashin V, Revelsky I. Evaluation of mass spectral library search algorithms implemented in commercial software. J Mass Spectrom. 2015; 50:820–825.
-
(2015)
J Mass Spectrom
, vol.50
, pp. 820-825
-
-
Samokhin, A.1
Sotnezova, K.2
Lashin, V.3
Revelsky, I.4
-
95
-
-
0033406456
-
Exact mass measurement of product ions for the structural elucidation of drug metabolites with a tandem quadrupole orthogonal-acceleration time-of-flight mass spectrometer
-
Hopfgartner G, Chernushevich IV, Covey T, Plomley JB, Bonner R. Exact mass measurement of product ions for the structural elucidation of drug metabolites with a tandem quadrupole orthogonal-acceleration time-of-flight mass spectrometer. J Am Soc Mass Spectrom. 1999; 10:1305–1314.
-
(1999)
J Am Soc Mass Spectrom
, vol.10
, pp. 1305-1314
-
-
Hopfgartner, G.1
Chernushevich, I.V.2
Covey, T.3
Plomley, J.B.4
Bonner, R.5
-
96
-
-
84985478030
-
Probability based matching of mass spectra. Rapid identification of specific compounds in mixtures
-
McLafferty F, Hertel R, Villwock R. Probability based matching of mass spectra. Rapid identification of specific compounds in mixtures. Organic Mass Spectrom. 1974; 9:690–702.
-
(1974)
Organic Mass Spectrom
, vol.9
, pp. 690-702
-
-
McLafferty, F.1
Hertel, R.2
Villwock, R.3
-
97
-
-
0000881748
-
Optimization and testing of mass spectral library search algorithms for compound identification
-
Stein SE, Scott DR. Optimization and testing of mass spectral library search algorithms for compound identification. J Am Soc Mass Spectrom. 1994; 5:859–866.
-
(1994)
J Am Soc Mass Spectrom
, vol.5
, pp. 859-866
-
-
Stein, S.E.1
Scott, D.R.2
-
98
-
-
0000355793
-
Estimating probabilities of correct identification from results of mass spectral library searches
-
Stein SE. Estimating probabilities of correct identification from results of mass spectral library searches. J Am Soc Mass Spectrom. 1994; 5:316–323.
-
(1994)
J Am Soc Mass Spectrom
, vol.5
, pp. 316-323
-
-
Stein, S.E.1
-
99
-
-
79953273023
-
Evaluation of the comparability of spectra generated using a tuning point protocol on twelve electrospray ionisation tandem-in-space mass spectrometers
-
Champarnaud E, Hopley C. Evaluation of the comparability of spectra generated using a tuning point protocol on twelve electrospray ionisation tandem-in-space mass spectrometers. Rapid Commun Mass Spectrom. 2011; 25:1001–1007.
-
(2011)
Rapid Commun Mass Spectrom
, vol.25
, pp. 1001-1007
-
-
Champarnaud, E.1
Hopley, C.2
-
100
-
-
85006355990
-
Methods to calculate spectrum similarity
-
Keerthikumar S, Mathivanan S, editors., New York, NY, Springer New Yor
-
Yilmaz Ş, Vandermarliere E, Martens L. Methods to calculate spectrum similarity. In: Keerthikumar S, Mathivanan S, editors. Proteome bioinformatics. New York, NY: Springer New York; 2017. pp. 75–100.
-
(2017)
Proteome bioinformatics
, pp. 75-100
-
-
Yilmaz, Ş.1
Vandermarliere, E.2
Martens, L.3
-
101
-
-
85049084288
-
-
Significance estimation for large scale untargeted metabolomics annotations. bioRxiv 109389
-
Hansen ME, Smedsgaard J, Petras D, et al. Significance estimation for large scale untargeted metabolomics annotations. bioRxiv 109389;https://doi.org/10.1101/109389
-
-
-
Hansen, M.E.1
Smedsgaard, J.2
Petras, D.3
-
102
-
-
84979656400
-
Compound identification using random projection for gas chromatography-mass spectrometry data
-
Zhang J, Wei X-L, Zheng C-H, Wang B, Wang F, Chen P. Compound identification using random projection for gas chromatography-mass spectrometry data. Int J Mass Spectrom. 2016; 407:16–21.
-
(2016)
Int J Mass Spectrom
, vol.407
, pp. 16-21
-
-
Zhang, J.1
Wei, X.-L.2
Zheng, C.-H.3
Wang, B.4
Wang, F.5
Chen, P.6
-
103
-
-
70349125897
-
X-Rank: a robust algorithm for small molecule identification using tandem mass spectrometry
-
Mylonas R, Mauron Y, Masselot A, et al. X-Rank: a robust algorithm for small molecule identification using tandem mass spectrometry. Anal Chem. 2009; 81:7604–7610.
-
(2009)
Anal Chem
, vol.81
, pp. 7604-7610
-
-
Mylonas, R.1
Mauron, Y.2
Masselot, A.3
-
104
-
-
65649115837
-
On the inter-instrument and the inter-laboratory transferability of a tandem mass spectral reference library: 2. Optimization and characterization of the search algorithm
-
Oberacher H, Pavlic M, Libiseller K, et al. On the inter-instrument and the inter-laboratory transferability of a tandem mass spectral reference library: 2. Optimization and characterization of the search algorithm. J Mass Spectrom. 2009; 44:494–502.
-
(2009)
J Mass Spectrom
, vol.44
, pp. 494-502
-
-
Oberacher, H.1
Pavlic, M.2
Libiseller, K.3
-
105
-
-
84876230812
-
Testing an alternative search algorithm for compound identification with the ‘Wiley Registry of Tandem Mass Spectral Data, MSforID’
-
Oberacher H, Whitley G, Berger B, Weinmann W. Testing an alternative search algorithm for compound identification with the ‘Wiley Registry of Tandem Mass Spectral Data, MSforID’. J Mass Spectrom. 2013; 48:497–504.
-
(2013)
J Mass Spectrom
, vol.48
, pp. 497-504
-
-
Oberacher, H.1
Whitley, G.2
Berger, B.3
Weinmann, W.4
-
106
-
-
84881476562
-
LipidBlast in silico tandem mass spectrometry database for lipid identification
-
Kind T, Liu K-H, Lee DY, DeFelice B, Meissen JK, Fiehn O. LipidBlast in silico tandem mass spectrometry database for lipid identification. Nat Methods. 2013; 10:755–758.
-
(2013)
Nat Methods
, vol.10
, pp. 755-758
-
-
Kind, T.1
Liu, K.-H.2
Lee, D.Y.3
DeFelice, B.4
Meissen, J.K.5
Fiehn, O.6
-
107
-
-
85016455780
-
Applying tandem mass spectral libraries for solving the critical assessment of small molecule identification (CASMI) LC/MS challenge 2012
-
Oberacher H. Applying tandem mass spectral libraries for solving the critical assessment of small molecule identification (CASMI) LC/MS challenge 2012. Metabolites. 2013; 3:312–324.
-
(2013)
Metabolites
, vol.3
, pp. 312-324
-
-
Oberacher, H.1
-
108
-
-
84956908632
-
Automatic compound annotation from mass spectrometry data using MAGMa
-
Ridder L, van der Hooft JJ, Verhoeven S. Automatic compound annotation from mass spectrometry data using MAGMa. Mass Spectrom. 2014; 3:S0033–S0033.
-
(2014)
Mass Spectrom
, vol.3
, pp. S0033
-
-
Ridder, L.1
van der Hooft, J.J.2
Verhoeven, S.3
-
109
-
-
84959526060
-
Bar coding MS2 spectra for metabolite identification
-
Spalding JL, Cho K, Mahieu NG, et al. Bar coding MS2 spectra for metabolite identification. Anal Chem. 2016; 88:2538–2542.
-
(2016)
Anal Chem
, vol.88
, pp. 2538-2542
-
-
Spalding, J.L.1
Cho, K.2
Mahieu, N.G.3
-
110
-
-
84994813307
-
SPLASH, a hashed identifier for mass spectra
-
Wohlgemuth G, Mehta SS, Mejia RF, et al. SPLASH, a hashed identifier for mass spectra. Nat Biotechnol. 2016; 34:1099–1101.
-
(2016)
Nat Biotechnol
, vol.34
, pp. 1099-1101
-
-
Wohlgemuth, G.1
Mehta, S.S.2
Mejia, R.F.3
-
111
-
-
85049084288
-
-
Significance estimation for large scale untargeted metabolomics annotations. bioRxiv 109389
-
Scheubert K, Hufsky F, Petras D, et al. Significance estimation for large scale untargeted metabolomics annotations. bioRxiv 109389. https://doi.org/10.1101/109389
-
-
-
Scheubert, K.1
Hufsky, F.2
Petras, D.3
-
113
-
-
84873730497
-
Application of electrospray ionization product ion spectra for identification with atmospheric pressure matrix-assisted laser desorption/ionization mass spectrometry—a case study with seized drugs
-
Östman P, Ketola RA, Ojanperä I. Application of electrospray ionization product ion spectra for identification with atmospheric pressure matrix-assisted laser desorption/ionization mass spectrometry—a case study with seized drugs. Drug Test Anal. 2013; 5:68–73.
-
(2013)
Drug Test Anal
, vol.5
, pp. 68-73
-
-
Östman, P.1
Ketola, R.A.2
Ojanperä, I.3
-
114
-
-
84856328686
-
Towards a universal LC-MS screening procedure—can an LIT LC-MSn screening approach and reference library be used on a quadrupole-LIT hybrid instrument
-
Wissenbach DK, Meyer MR, Weber AA, et al. Towards a universal LC-MS screening procedure—can an LIT LC-MSn screening approach and reference library be used on a quadrupole-LIT hybrid instrument? J Mass Spectrom. 2012; 47:66–71.
-
(2012)
J Mass Spectrom
, vol.47
, pp. 66-71
-
-
Wissenbach, D.K.1
Meyer, M.R.2
Weber, A.A.3
-
115
-
-
84978254473
-
Quantitative comparison of tandem mass spectra obtained on various instruments
-
Bazsó FL, Ozohanics O, Schlosser G, Ludányi K, Vékey K, Drahos L. Quantitative comparison of tandem mass spectra obtained on various instruments. J Am Soc Mass Spectrom. 2016; 27:1357–1365.
-
(2016)
J Am Soc Mass Spectrom
, vol.27
, pp. 1357-1365
-
-
Bazsó, F.L.1
Ozohanics, O.2
Schlosser, G.3
Ludányi, K.4
Vékey, K.5
Drahos, L.6
-
116
-
-
84923773050
-
Building high-quality assay libraries for targeted analysis of SWATH MS data
-
Schubert OT, Gillet LC, Collins BC, et al. Building high-quality assay libraries for targeted analysis of SWATH MS data. Nat Protoc. 2015; 10:426–441.
-
(2015)
Nat Protoc
, vol.10
, pp. 426-441
-
-
Schubert, O.T.1
Gillet, L.C.2
Collins, B.C.3
-
117
-
-
84990637878
-
Collision-energy ramp. A modification to an RF-only quadrupole collision cell
-
Bott G, Ogden S, Leary JA. Collision-energy ramp. A modification to an RF-only quadrupole collision cell. Rapid Commun Mass Spectrom. 1990; 4:341–344.
-
(1990)
Rapid Commun Mass Spectrom
, vol.4
, pp. 341-344
-
-
Bott, G.1
Ogden, S.2
Leary, J.A.3
-
118
-
-
0034051112
-
A library of atmospheric pressure ionization daughter ion mass spectra based on wideband excitation in an ion trap mass spectrometer
-
Baumann C, Cintora MA, Eichler M, et al. A library of atmospheric pressure ionization daughter ion mass spectra based on wideband excitation in an ion trap mass spectrometer. Rapid Commun Mass Spectrom. 2000; 14:349–356.
-
(2000)
Rapid Commun Mass Spectrom
, vol.14
, pp. 349-356
-
-
Baumann, C.1
Cintora, M.A.2
Eichler, M.3
-
119
-
-
3042696846
-
Reproducible product-ion tandem mass spectra on various liquid chromatography/mass spectrometry instruments for the development of spectral libraries
-
Bristow AW, Webb KS, Lubben AT, Halket J. Reproducible product-ion tandem mass spectra on various liquid chromatography/mass spectrometry instruments for the development of spectral libraries. Rapid Commun Mass Spectrom. 2004; 18:1447–1454.
-
(2004)
Rapid Commun Mass Spectrom
, vol.18
, pp. 1447-1454
-
-
Bristow, A.W.1
Webb, K.S.2
Lubben, A.T.3
Halket, J.4
-
120
-
-
84929459089
-
Correction of precursor and product ion relative abundances in order to standardize CID spectra and improve Ecom50 accuracy for non-targeted metabolomics
-
Dubey R, Hill DW, Lai S, Chen M-H, Grant DF. Correction of precursor and product ion relative abundances in order to standardize CID spectra and improve Ecom50 accuracy for non-targeted metabolomics. Metabolomics. 2015; 11:753–763.
-
(2015)
Metabolomics
, vol.11
, pp. 753-763
-
-
Dubey, R.1
Hill, D.W.2
Lai, S.3
Chen, M.-H.4
Grant, D.F.5
-
121
-
-
85008390292
-
Ion annotation-assisted analysis of LC-MS based metabolomic experiment
-
Varghese RS, Zhou B, Ranjbar MRN, Zhao Y, Ressom HW. Ion annotation-assisted analysis of LC-MS based metabolomic experiment. Proteome Sci. 2012; 10:S8.
-
(2012)
Proteome Sci
, vol.10
, pp. S8
-
-
Varghese, R.S.1
Zhou, B.2
Ranjbar, M.R.N.3
Zhao, Y.4
Ressom, H.W.5
-
122
-
-
79954498991
-
In-source fragmentation and accurate mass analysis of multiclass flavonoid conjugates by electrospray ionization time-of-flight mass spectrometry
-
Abrankó L, García-Reyes JF, Molina-Díaz A. In-source fragmentation and accurate mass analysis of multiclass flavonoid conjugates by electrospray ionization time-of-flight mass spectrometry. J Mass Spectrom. 2011; 46:478–488.
-
(2011)
J Mass Spectrom
, vol.46
, pp. 478-488
-
-
Abrankó, L.1
García-Reyes, J.F.2
Molina-Díaz, A.3
-
123
-
-
84923165596
-
Avoiding misannotation of in-source fragmentation products as cellular metabolites in liquid chromatography-mass spectrometry-based metabolomics
-
Xu Y-F, Lu W, Rabinowitz JD. Avoiding misannotation of in-source fragmentation products as cellular metabolites in liquid chromatography-mass spectrometry-based metabolomics. Anal Chem. 2015; 87:2273–2281.
-
(2015)
Anal Chem
, vol.87
, pp. 2273-2281
-
-
Xu, Y.-F.1
Lu, W.2
Rabinowitz, J.D.3
-
124
-
-
84937802775
-
Reaction of arylium ions with the collision gas N2 in electrospray ionization mass spectrometry
-
Liang Y, Neta P, Simón-Manso Y, Stein SE. Reaction of arylium ions with the collision gas N2 in electrospray ionization mass spectrometry. Rapid Commun Mass Spectrom. 2015; 29:629–636.
-
(2015)
Rapid Commun Mass Spectrom
, vol.29
, pp. 629-636
-
-
Liang, Y.1
Neta, P.2
Simón-Manso, Y.3
Stein, S.E.4
-
125
-
-
84924703422
-
Unexpected peaks in tandem mass spectra due to reaction of product ions with residual water in mass spectrometer collision cells
-
Neta P, Farahani M, Simón-Manso Y, Liang Y, Yang X, Stein SE. Unexpected peaks in tandem mass spectra due to reaction of product ions with residual water in mass spectrometer collision cells. Rapid Commun Mass Spectrom. 2014; 28:2645–2660.
-
(2014)
Rapid Commun Mass Spectrom
, vol.28
, pp. 2645-2660
-
-
Neta, P.1
Farahani, M.2
Simón-Manso, Y.3
Liang, Y.4
Yang, X.5
Stein, S.E.6
-
126
-
-
68849083050
-
Integrated, nontargeted ultrahigh performance liquid chromatography/electrospray ionization tandem mass spectrometry platform for the identification and relative quantification of the small-molecule complement of biological systems
-
Evans AM, DeHaven CD, Barrett T, Mitchell M, Milgram E. Integrated, nontargeted ultrahigh performance liquid chromatography/electrospray ionization tandem mass spectrometry platform for the identification and relative quantification of the small-molecule complement of biological systems. Anal Chem. 2009; 81:6656–6667.
-
(2009)
Anal Chem
, vol.81
, pp. 6656-6667
-
-
Evans, A.M.1
DeHaven, C.D.2
Barrett, T.3
Mitchell, M.4
Milgram, E.5
-
127
-
-
84957565930
-
Identification of meat products by shotgun spectral matching
-
Ohana D, Dalebout H, Marissen R, et al. Identification of meat products by shotgun spectral matching. Food Chem. 2016; 203:28–34.
-
(2016)
Food Chem
, vol.203
, pp. 28-34
-
-
Ohana, D.1
Dalebout, H.2
Marissen, R.3
-
128
-
-
84979234626
-
Tandem mass spectral libraries of peptides and their roles in proteomics research
-
Shao W, Lam H. Tandem mass spectral libraries of peptides and their roles in proteomics research. Mass Spectrom Rev. 2016. https://doi.org/10.1002/mas.21512
-
(2016)
Mass Spectrom Rev
-
-
Shao, W.1
Lam, H.2
-
129
-
-
85008473043
-
MSCombine: a tool for merging untargeted metabolomic data from high-resolution mass spectrometry in the positive and negative ionization modes
-
Calderón-Santiago M, Fernández-Peralbo MA, Priego-Capote F, de Castro MDL. MSCombine: a tool for merging untargeted metabolomic data from high-resolution mass spectrometry in the positive and negative ionization modes. Metabolomics. 2016; 12:1–12.
-
(2016)
Metabolomics
, vol.12
, pp. 1-12
-
-
Calderón-Santiago, M.1
Fernández-Peralbo, M.A.2
Priego-Capote, F.3
de Castro, M.D.L.4
-
130
-
-
85028197479
-
Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures
-
Garg N, Kapono CA, Lim YW, et al. Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures. Int J Mass Spectrom. 2015; 377:719–727.
-
(2015)
Int J Mass Spectrom
, vol.377
, pp. 719-727
-
-
Garg, N.1
Kapono, C.A.2
Lim, Y.W.3
-
131
-
-
77953363034
-
Comprehensive blood plasma lipidomics by liquid chromatography/quadrupole time-of-flight mass spectrometry
-
Sandra K, dos Santos Pereira A, Vanhoenacker G, David F, Sandra P. Comprehensive blood plasma lipidomics by liquid chromatography/quadrupole time-of-flight mass spectrometry. J Chromatogr A. 2010; 1217:4087–4099.
-
(2010)
J Chromatogr A
, vol.1217
, pp. 4087-4099
-
-
Sandra, K.1
dos Santos Pereira, A.2
Vanhoenacker, G.3
David, F.4
Sandra, P.5
-
132
-
-
85018329640
-
Mass Spectral Feature List Optimizer (MS-FLO): a tool to minimize false positive peak reports in untargeted LC-MS data processing
-
Defelice BC, Mehta SS, Samra S, et al. Mass Spectral Feature List Optimizer (MS-FLO): a tool to minimize false positive peak reports in untargeted LC-MS data processing. Anal Chem. 2017; 89:3250–3255.
-
(2017)
Anal Chem
, vol.89
, pp. 3250-3255
-
-
Defelice, B.C.1
Mehta, S.S.2
Samra, S.3
-
133
-
-
79959851638
-
Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra
-
Frank AM, Monroe ME, Shah AR, et al. Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra. Nat Methods. 2011; 8:587–591.
-
(2011)
Nat Methods
, vol.8
, pp. 587-591
-
-
Frank, A.M.1
Monroe, M.E.2
Shah, A.R.3
-
134
-
-
84976332590
-
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
-
Griss J, Perez-Riverol Y, Lewis S, et al. Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets. Nat Methods. 2016; 13:651–656.
-
(2016)
Nat Methods
, vol.13
, pp. 651-656
-
-
Griss, J.1
Perez-Riverol, Y.2
Lewis, S.3
-
135
-
-
84917679471
-
Simultaneous screening of targeted and non-targeted contaminants using an LC-QTOF-MS system and automated MS/MS library searching
-
Herrera-Lopez S, Hernando M, García-Calvo E, Fernández-Alba A, Ulaszewska M. Simultaneous screening of targeted and non-targeted contaminants using an LC-QTOF-MS system and automated MS/MS library searching. J Mass Spectrom. 2014; 49:878–893.
-
(2014)
J Mass Spectrom
, vol.49
, pp. 878-893
-
-
Herrera-Lopez, S.1
Hernando, M.2
García-Calvo, E.3
Fernández-Alba, A.4
Ulaszewska, M.5
-
136
-
-
84923205184
-
Metabolite identification for mass spectrometry-based metabolomics using multiple types of correlated ion information
-
Lynn K-S, Cheng M-L, Chen Y-R, et al. Metabolite identification for mass spectrometry-based metabolomics using multiple types of correlated ion information. Anal Chem. 2015; 87:2143–2151.
-
(2015)
Anal Chem
, vol.87
, pp. 2143-2151
-
-
Lynn, K.-S.1
Cheng, M.-L.2
Chen, Y.-R.3
-
137
-
-
17444362637
-
An MS/MS library on an ion-trap instrument for efficient dereplication of natural products. Different fragmentation patterns for [M+ H]+ and [M+ Na]+ ions
-
Fredenhagen A, Derrien C, Gassmann E. An MS/MS library on an ion-trap instrument for efficient dereplication of natural products. Different fragmentation patterns for [M+ H]+ and [M+ Na]+ ions. J Nat Prod. 2005; 68:385–391.
-
(2005)
J Nat Prod
, vol.68
, pp. 385-391
-
-
Fredenhagen, A.1
Derrien, C.2
Gassmann, E.3
-
138
-
-
1842428022
-
Creation and comparison of MS/MS spectral libraries using quadrupole ion trap and triple-quadrupole mass spectrometers
-
Josephs JL, Sanders M. Creation and comparison of MS/MS spectral libraries using quadrupole ion trap and triple-quadrupole mass spectrometers. Rapid Commun Mass Spectrom. 2004; 18:743–759.
-
(2004)
Rapid Commun Mass Spectrom
, vol.18
, pp. 743-759
-
-
Josephs, J.L.1
Sanders, M.2
-
139
-
-
0037131105
-
A mass spectral library based on chemical ionization and collision-induced dissociation
-
Kienhuis P, Geerdink R. A mass spectral library based on chemical ionization and collision-induced dissociation. J Chromatogr A. 2002; 974:161–168.
-
(2002)
J Chromatogr A
, vol.974
, pp. 161-168
-
-
Kienhuis, P.1
Geerdink, R.2
-
140
-
-
13244249953
-
Chemical derivatization and mass spectral libraries in metabolic profiling by GC/MS and LC/MS/MS
-
Halket JM, Waterman D, Przyborowska AM, Patel RK, Fraser PD, Bramley PM. Chemical derivatization and mass spectral libraries in metabolic profiling by GC/MS and LC/MS/MS. J Exp Bot. 2005; 56:219–243.
-
(2005)
J Exp Bot
, vol.56
, pp. 219-243
-
-
Halket, J.M.1
Waterman, D.2
Przyborowska, A.M.3
Patel, R.K.4
Fraser, P.D.5
Bramley, P.M.6
-
141
-
-
84863479215
-
Metabolite identification using automated comparison of high-resolution multistage mass spectral trees
-
Rojas-Cherto M, Peironcely JE, Kasper PT, et al. Metabolite identification using automated comparison of high-resolution multistage mass spectral trees. Anal Chem. 2012; 84:5524–5534.
-
(2012)
Anal Chem
, vol.84
, pp. 5524-5534
-
-
Rojas-Cherto, M.1
Peironcely, J.E.2
Kasper, P.T.3
-
142
-
-
60649112635
-
Determination of ion structures in structurally related compounds using precursor ion fingerprinting
-
Sheldon MT, Mistrik R, Croley TR. Determination of ion structures in structurally related compounds using precursor ion fingerprinting. J Am Soc Mass Spectrom. 2009; 20:370–376.
-
(2009)
J Am Soc Mass Spectrom
, vol.20
, pp. 370-376
-
-
Sheldon, M.T.1
Mistrik, R.2
Croley, T.R.3
-
143
-
-
84930182757
-
Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics
-
Vaniya A, Fiehn O. Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics. Trends Anal Chem. 2015; 69:52–61.
-
(2015)
Trends Anal Chem
, vol.69
, pp. 52-61
-
-
Vaniya, A.1
Fiehn, O.2
-
144
-
-
77954439868
-
MassBank: a public repository for sharing mass spectral data for life sciences
-
Horai H, Arita M, Kanaya S, et al. MassBank: a public repository for sharing mass spectral data for life sciences. J Mass Spectrom. 2010; 45:703–714.
-
(2010)
J Mass Spectrom
, vol.45
, pp. 703-714
-
-
Horai, H.1
Arita, M.2
Kanaya, S.3
-
145
-
-
32444432587
-
METLIN: a metabolite mass spectral database
-
Smith CA, O'Maille G, Want EJ, et al. METLIN: a metabolite mass spectral database. Ther Drug Monit. 2005; 27:747–751.
-
(2005)
Ther Drug Monit
, vol.27
, pp. 747-751
-
-
Smith, C.A.1
O'Maille, G.2
Want, E.J.3
-
146
-
-
84875123279
-
Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database
-
Zhu Z-J, Schultz AW, Wang J, et al. Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database. Nat Protoc. 2013; 8:451–460.
-
(2013)
Nat Protoc
, vol.8
, pp. 451-460
-
-
Zhu, Z.-J.1
Schultz, A.W.2
Wang, J.3
-
147
-
-
84907888159
-
IsoMETLIN: a database for isotope-Based metabolomics
-
Cho K, Mahieu N, Ivanisevic J, et al. IsoMETLIN: a database for isotope-Based metabolomics. Anal Chem. 2014; 86:9358–9361.
-
(2014)
Anal Chem
, vol.86
, pp. 9358-9361
-
-
Cho, K.1
Mahieu, N.2
Ivanisevic, J.3
-
148
-
-
84876256767
-
Evaluation of the sensitivity of the ‘Wiley registry of tandem mass spectral data, MSforID'with MS/MS data of the ‘NIST/NIH/EPA mass spectral library'
-
Oberacher H, Whitley G, Berger B. Evaluation of the sensitivity of the ‘Wiley registry of tandem mass spectral data, MSforID'with MS/MS data of the ‘NIST/NIH/EPA mass spectral library'. J Mass Spectrom. 2013; 48:487–496.
-
(2013)
J Mass Spectrom
, vol.48
, pp. 487-496
-
-
Oberacher, H.1
Whitley, G.2
Berger, B.3
-
149
-
-
84859321780
-
Evaluation of the performance of a tandem mass spectral library with mass spectral data extracted from literature
-
Würtinger P, Oberacher H. Evaluation of the performance of a tandem mass spectral library with mass spectral data extracted from literature. Drug Test Anal. 2012; 4:235–241.
-
(2012)
Drug Test Anal
, vol.4
, pp. 235-241
-
-
Würtinger, P.1
Oberacher, H.2
-
150
-
-
84857495788
-
On the inter-instrument and the inter-laboratory transferability of a tandem mass spectral reference library. 3. Focus on ion trap and upfront CID
-
Oberacher H, Pitterl F, Siapi E, et al. On the inter-instrument and the inter-laboratory transferability of a tandem mass spectral reference library. 3. Focus on ion trap and upfront CID. J Mass Spectrom. 2012; 47:263–270.
-
(2012)
J Mass Spectrom
, vol.47
, pp. 263-270
-
-
Oberacher, H.1
Pitterl, F.2
Siapi, E.3
-
151
-
-
71449093416
-
ESI-MS/MS library of 1,253 compounds for application in forensic and clinical toxicology
-
Dresen S, Gergov M, Politi L, Halter C, Weinmann W. ESI-MS/MS library of 1,253 compounds for application in forensic and clinical toxicology. Anal Bioanal Chem. 2009; 395:2521–2526.
-
(2009)
Anal Bioanal Chem
, vol.395
, pp. 2521-2526
-
-
Dresen, S.1
Gergov, M.2
Politi, L.3
Halter, C.4
Weinmann, W.5
-
152
-
-
33746538415
-
Electrospray-ionization MS/MS library of drugs as database for method development and drug identification
-
Dresen S, Kempf J, Weinmann W. Electrospray-ionization MS/MS library of drugs as database for method development and drug identification. Forensic Sci Int. 2006; 161:86–91.
-
(2006)
Forensic Sci Int
, vol.161
, pp. 86-91
-
-
Dresen, S.1
Kempf, J.2
Weinmann, W.3
-
153
-
-
79958850026
-
Fragmentation of toxicologically relevant drugs in positive-ion liquid chromatography-tandem mass spectrometry
-
Niessen W. Fragmentation of toxicologically relevant drugs in positive-ion liquid chromatography-tandem mass spectrometry. Mass Spectrom Rev. 2011; 30:626–663.
-
(2011)
Mass Spectrom Rev
, vol.30
, pp. 626-663
-
-
Niessen, W.1
-
154
-
-
84867580004
-
Fragmentation of toxicologically relevant drugs in negative-ion liquid chromatography-tandem mass spectrometry
-
Niessen W. Fragmentation of toxicologically relevant drugs in negative-ion liquid chromatography-tandem mass spectrometry. Mass Spectrom Rev. 2012; 31:626–665.
-
(2012)
Mass Spectrom Rev
, vol.31
, pp. 626-665
-
-
Niessen, W.1
-
155
-
-
79960628455
-
Drugs of abuse screening in urine as part of a metabolite-based LC-MSn screening concept
-
Wissenbach DK, Meyer MR, Remane D, Philipp AA, Weber AA, Maurer HH. Drugs of abuse screening in urine as part of a metabolite-based LC-MSn screening concept. Anal Bioanal Chem. 2011; 400:3481–3489.
-
(2011)
Anal Bioanal Chem
, vol.400
, pp. 3481-3489
-
-
Wissenbach, D.K.1
Meyer, M.R.2
Remane, D.3
Philipp, A.A.4
Weber, A.A.5
Maurer, H.H.6
-
156
-
-
79954443457
-
Development of the first metabolite-based LC-MS n urine drug screening procedure-exemplified for antidepressants
-
Wissenbach DK, Meyer MR, Remane D, Weber AA, Maurer HH. Development of the first metabolite-based LC-MS n urine drug screening procedure-exemplified for antidepressants. Anal Bioanal Chem. 2011; 400:79–88.
-
(2011)
Anal Bioanal Chem
, vol.400
, pp. 79-88
-
-
Wissenbach, D.K.1
Meyer, M.R.2
Remane, D.3
Weber, A.A.4
Maurer, H.H.5
-
157
-
-
67649785231
-
How large is the metabolome? A critical analysis of data exchange practices in chemistry
-
Kind T, Scholz M, Fiehn O. How large is the metabolome? A critical analysis of data exchange practices in chemistry. PLoS ONE. 2009; 4:e5440.
-
(2009)
PLoS ONE
, vol.4
-
-
Kind, T.1
Scholz, M.2
Fiehn, O.3
-
158
-
-
84951853936
-
Mass spectrometry tools and workflows for revealing microbial chemistry
-
Luzzatto-Knaan T, Melnik AV, Dorrestein PC. Mass spectrometry tools and workflows for revealing microbial chemistry. Analyst. 2015; 140:4949–4966.
-
(2015)
Analyst
, vol.140
, pp. 4949-4966
-
-
Luzzatto-Knaan, T.1
Melnik, A.V.2
Dorrestein, P.C.3
-
159
-
-
84981297901
-
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
-
Wang M, Carver JJ, Phelan VV, et al. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nat Biotechnol. 2016; 34:828–837.
-
(2016)
Nat Biotechnol
, vol.34
, pp. 828-837
-
-
Wang, M.1
Carver, J.J.2
Phelan, V.V.3
-
160
-
-
84865247010
-
RIKEN tandem mass spectral database (ReSpect) for phytochemicals: a plant-specific MS/MS-based data resource and database
-
Sawada Y, Nakabayashi R, Yamada Y, et al. RIKEN tandem mass spectral database (ReSpect) for phytochemicals: a plant-specific MS/MS-based data resource and database. Phytochemistry. 2012; 82:38–45.
-
(2012)
Phytochemistry
, vol.82
, pp. 38-45
-
-
Sawada, Y.1
Nakabayashi, R.2
Yamada, Y.3
-
161
-
-
58849117570
-
MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites
-
Matsuda F, Yonekura-Sakakibara K, Niida R, Kuromori T, Shinozaki K, Saito K. MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites. Plant J. 2009; 57:555–577.
-
(2009)
Plant J
, vol.57
, pp. 555-577
-
-
Matsuda, F.1
Yonekura-Sakakibara, K.2
Niida, R.3
Kuromori, T.4
Shinozaki, K.5
Saito, K.6
-
162
-
-
84878942117
-
Accurate mass-time tag library for LC/MS-based metabolite profiling of medicinal plants
-
Cuthbertson DJ, Johnson SR, Piljac-Žegarac J, et al. Accurate mass-time tag library for LC/MS-based metabolite profiling of medicinal plants. Phytochemistry. 2013; 91:187–197.
-
(2013)
Phytochemistry
, vol.91
, pp. 187-197
-
-
Cuthbertson, D.J.1
Johnson, S.R.2
Piljac-Žegarac, J.3
-
163
-
-
84937697519
-
Construction of an ultrahigh pressure liquid chromatography-tandem mass spectral library of plant natural products and comparative spectral analyses
-
Lei Z, Jing L, Qiu F, et al. Construction of an ultrahigh pressure liquid chromatography-tandem mass spectral library of plant natural products and comparative spectral analyses. Anal Chem. 2015; 87:7373–7381.
-
(2015)
Anal Chem
, vol.87
, pp. 7373-7381
-
-
Lei, Z.1
Jing, L.2
Qiu, F.3
-
164
-
-
84879614759
-
Online spectral library for GC-atmospheric pressure chemical ionization-ToF MS
-
Pacchiarotta T, Derks RJ, Hurtado-Fernandez E, et al. Online spectral library for GC-atmospheric pressure chemical ionization-ToF MS. Bioanalysis. 2013; 5:1515–1525.
-
(2013)
Bioanalysis
, vol.5
, pp. 1515-1525
-
-
Pacchiarotta, T.1
Derks, R.J.2
Hurtado-Fernandez, E.3
-
165
-
-
84984985904
-
The WEIZMASS spectral library for high-confidence metabolite identification
-
Shahaf N, Rogachev I, Heinig U, et al. The WEIZMASS spectral library for high-confidence metabolite identification. Nat Commun. 2016; 7:12423.
-
(2016)
Nat Commun
, vol.7
, pp. 12423
-
-
Shahaf, N.1
Rogachev, I.2
Heinig, U.3
-
166
-
-
84903524503
-
Accurate dereplication of bioactive secondary metabolites from marine-derived fungi by UHPLC-DAD-QTOFMS and a MS/HRMS library
-
Kildgaard S, Mansson M, Dosen I, et al. Accurate dereplication of bioactive secondary metabolites from marine-derived fungi by UHPLC-DAD-QTOFMS and a MS/HRMS library. Marine Drugs. 2014; 12:3681–3705.
-
(2014)
Marine Drugs
, vol.12
, pp. 3681-3705
-
-
Kildgaard, S.1
Mansson, M.2
Dosen, I.3
-
167
-
-
50049096775
-
XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization
-
Benton HP, Wong DM, Trauger SA, Siuzdak G. XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization. Anal Chem. 2008; 80:6382–6389.
-
(2008)
Anal Chem
, vol.80
, pp. 6382-6389
-
-
Benton, H.P.1
Wong, D.M.2
Trauger, S.A.3
Siuzdak, G.4
-
168
-
-
33747600384
-
Combined use of ESI-QqTOF-MS and ESI-QqTOF-MS/MS with mass-spectral library search for qualitative analysis of drugs
-
Pavlic M, Libiseller K, Oberacher H. Combined use of ESI-QqTOF-MS and ESI-QqTOF-MS/MS with mass-spectral library search for qualitative analysis of drugs. Anal Bioanal Chem. 2006; 386:69–82.
-
(2006)
Anal Bioanal Chem
, vol.386
, pp. 69-82
-
-
Pavlic, M.1
Libiseller, K.2
Oberacher, H.3
-
169
-
-
84905398238
-
Mass++: a visualization and analysis tool for mass spectrometry
-
Tanaka S, Fujita Y, Parry HE, et al. Mass++: a visualization and analysis tool for mass spectrometry. J Proteome Res. 2014; 13:3846–3853.
-
(2014)
J Proteome Res
, vol.13
, pp. 3846-3853
-
-
Tanaka, S.1
Fujita, Y.2
Parry, H.E.3
-
170
-
-
84984878984
-
OpenMS: a flexible open-source software platform for mass spectrometry data analysis
-
Röst HL, Sachsenberg T, Aiche S, et al. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Methods. 2016; 13:741–748.
-
(2016)
Nat Methods
, vol.13
, pp. 741-748
-
-
Röst, H.L.1
Sachsenberg, T.2
Aiche, S.3
-
171
-
-
42249108173
-
OpenMS—an open-source software framework for mass spectrometry
-
Sturm M, Bertsch A, Gröpl C, et al. OpenMS—an open-source software framework for mass spectrometry. BMC Bioinformatics. 2008; 9:163.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 163
-
-
Sturm, M.1
Bertsch, A.2
Gröpl, C.3
-
172
-
-
84863444828
-
Protocol for an electrospray ionization tandem mass spectral product ion library: development and application for identification of 240 pesticides in foods
-
Zhang K, Wong JW, Yang P, et al. Protocol for an electrospray ionization tandem mass spectral product ion library: development and application for identification of 240 pesticides in foods. Anal Chem. 2012; 84:5677–5684.
-
(2012)
Anal Chem
, vol.84
, pp. 5677-5684
-
-
Zhang, K.1
Wong, J.W.2
Yang, P.3
-
173
-
-
84874345577
-
Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics
-
Dunn WB, Erban A, Weber RJ, et al. Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics. Metabolomics. 2013; 9:44–66.
-
(2013)
Metabolomics
, vol.9
, pp. 44-66
-
-
Dunn, W.B.1
Erban, A.2
Weber, R.J.3
-
174
-
-
78650737804
-
Advances in structure elucidation of small molecules using mass spectrometry
-
Kind T, Fiehn O. Advances in structure elucidation of small molecules using mass spectrometry. Bioanal Rev. 2010; 2:23–60.
-
(2010)
Bioanal Rev
, vol.2
, pp. 23-60
-
-
Kind, T.1
Fiehn, O.2
-
175
-
-
84930273899
-
General principles of identification by mass spectrometry
-
Milman BL. General principles of identification by mass spectrometry. Trends Anal Chem. 2015; 69:24–33.
-
(2015)
Trends Anal Chem
, vol.69
, pp. 24-33
-
-
Milman, B.L.1
-
176
-
-
84961618649
-
Combined LC/UV/MS and NMR strategies for the dereplication of marine natural products
-
Pérez-Victoria I, Martín J, Reyes F. Combined LC/UV/MS and NMR strategies for the dereplication of marine natural products. Planta Med. 2016; 82:857–871.
-
(2016)
Planta Med
, vol.82
, pp. 857-871
-
-
Pérez-Victoria, I.1
Martín, J.2
Reyes, F.3
-
177
-
-
84922864949
-
Current approaches and challenges for the metabolite profiling of complex natural extracts
-
Wolfender J-L, Marti G, Thomas A, Bertrand S. Current approaches and challenges for the metabolite profiling of complex natural extracts. J Chromatogr A. 2015; 1382:136–164.
-
(2015)
J Chromatogr A
, vol.1382
, pp. 136-164
-
-
Wolfender, J.-L.1
Marti, G.2
Thomas, A.3
Bertrand, S.4
-
178
-
-
84885084934
-
High-resolution MS, MS/MS, and UV database of fungal secondary metabolites as a dereplication protocol for bioactive natural products
-
El-Elimat T, Figueroa M, Ehrmann BM, Cech NB, Pearce CJ, Oberlies NH. High-resolution MS, MS/MS, and UV database of fungal secondary metabolites as a dereplication protocol for bioactive natural products. J Nat Prod. 2013; 76:1709–1716.
-
(2013)
J Nat Prod
, vol.76
, pp. 1709-1716
-
-
El-Elimat, T.1
Figueroa, M.2
Ehrmann, B.M.3
Cech, N.B.4
Pearce, C.J.5
Oberlies, N.H.6
-
179
-
-
84927513467
-
The importance of mass spectrometric dereplication in fungal secondary metabolite analysis
-
71
-
Nielsen KF, Larsen TO. The importance of mass spectrometric dereplication in fungal secondary metabolite analysis. Front Microbiol. 2015; 6:71.
-
(2015)
Front Microbiol
, vol.6
-
-
Nielsen, K.F.1
Larsen, T.O.2
-
180
-
-
75949126260
-
AtMetExpress development: a phytochemical atlas of Arabidopsis development
-
Matsuda F, Hirai MY, Sasaki E, et al. AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol. 2010; 152:566–578.
-
(2010)
Plant Physiol
, vol.152
, pp. 566-578
-
-
Matsuda, F.1
Hirai, M.Y.2
Sasaki, E.3
-
181
-
-
28044449967
-
Identification of flavonoids using liquid chromatography with electrospray ionization and ion trap tandem mass spectrometry with an MS/MS library
-
Lee JS, Kim DH, Liu KH, Oh TK, Lee CH. Identification of flavonoids using liquid chromatography with electrospray ionization and ion trap tandem mass spectrometry with an MS/MS library. Rapid Commun Mass Spectrom. 2005; 19:3539–3548.
-
(2005)
Rapid Commun Mass Spectrom
, vol.19
, pp. 3539-3548
-
-
Lee, J.S.1
Kim, D.H.2
Liu, K.H.3
Oh, T.K.4
Lee, C.H.5
-
182
-
-
0036007549
-
Dual parallel electrospray ionization and atmospheric pressure chemical ionization mass spectrometry (MS), MS/MS and MS/MS/MS for the analysis of triacylglycerols and triacylglycerol oxidation products
-
Byrdwell W, Neff WE. Dual parallel electrospray ionization and atmospheric pressure chemical ionization mass spectrometry (MS), MS/MS and MS/MS/MS for the analysis of triacylglycerols and triacylglycerol oxidation products. Rapid Commun Mass Spectrom. 2002; 16:300–319.
-
(2002)
Rapid Commun Mass Spectrom
, vol.16
, pp. 300-319
-
-
Byrdwell, W.1
Neff, W.E.2
-
183
-
-
79954441243
-
Development and practical application of a library of CID accurate mass spectra of more than 2,500 toxic compounds for systematic toxicological analysis by LC-QTOF-MS with data-dependent acquisition
-
Broecker S, Herre S, Wüst B, Zweigenbaum J, Pragst F. Development and practical application of a library of CID accurate mass spectra of more than 2,500 toxic compounds for systematic toxicological analysis by LC-QTOF-MS with data-dependent acquisition. Anal Bioanal Chem. 2011; 400:101–117.
-
(2011)
Anal Bioanal Chem
, vol.400
, pp. 101-117
-
-
Broecker, S.1
Herre, S.2
Wüst, B.3
Zweigenbaum, J.4
Pragst, F.5
-
184
-
-
73249117667
-
Rapid screening and confirmation of drugs and toxic compounds in biological specimens using liquid chromatography/ion trap tandem mass spectrometry and automated library search
-
Liu HC, Liu RH, Lin DL, Ho HO. Rapid screening and confirmation of drugs and toxic compounds in biological specimens using liquid chromatography/ion trap tandem mass spectrometry and automated library search. Rapid Commun Mass Spectrom. 2010; 24:75–84.
-
(2010)
Rapid Commun Mass Spectrom
, vol.24
, pp. 75-84
-
-
Liu, H.C.1
Liu, R.H.2
Lin, D.L.3
Ho, H.O.4
-
185
-
-
19544366418
-
Development of a multi-target screening analysis for 301 drugs using a QTrap liquid chromatography/tandem mass spectrometry system and automated library searching
-
Mueller C, Weinmann W, Dresen S, Schreiber A, Gergov M. Development of a multi-target screening analysis for 301 drugs using a QTrap liquid chromatography/tandem mass spectrometry system and automated library searching. Rapid Commun Mass Spectrom. 2005; 19:1332–1338.
-
(2005)
Rapid Commun Mass Spectrom
, vol.19
, pp. 1332-1338
-
-
Mueller, C.1
Weinmann, W.2
Dresen, S.3
Schreiber, A.4
Gergov, M.5
-
186
-
-
84958761028
-
Data independent acquisition-digital archiving mass spectrometry: application to single kernel mycotoxin analysis of Fusarium graminearum infected maize
-
Renaud JB, Sumarah MW. Data independent acquisition-digital archiving mass spectrometry: application to single kernel mycotoxin analysis of Fusarium graminearum infected maize. Anal Bioanal Chem. 2016; 408:3083–3091.
-
(2016)
Anal Bioanal Chem
, vol.408
, pp. 3083-3091
-
-
Renaud, J.B.1
Sumarah, M.W.2
-
187
-
-
80053964813
-
Use of an accurate-mass database for the systematic identification of transformation products of organic contaminants in wastewater effluents
-
del Mar Gómez-Ramos M, Pérez-Parada A, García-Reyes JF, Fernández-Alba AR, Agüera A. Use of an accurate-mass database for the systematic identification of transformation products of organic contaminants in wastewater effluents. J Chromatogr A. 2011; 1218:8002–8012.
-
(2011)
J Chromatogr A
, vol.1218
, pp. 8002-8012
-
-
del Mar Gómez-Ramos, M.1
Pérez-Parada, A.2
García-Reyes, J.F.3
Fernández-Alba, A.R.4
Agüera, A.5
-
188
-
-
84943359221
-
Non-target screening with high-resolution mass spectrometry: critical review using a collaborative trial on water analysis
-
Schymanski EL, Singer HP, Slobodnik J, et al. Non-target screening with high-resolution mass spectrometry: critical review using a collaborative trial on water analysis. Anal Bioanal Chem. 2015; 407:6237–6255.
-
(2015)
Anal Bioanal Chem
, vol.407
, pp. 6237-6255
-
-
Schymanski, E.L.1
Singer, H.P.2
Slobodnik, J.3
-
189
-
-
84930181461
-
Current issues involving screening and identification of chemical contaminants in foods by mass spectrometry
-
Lehotay SJ, Sapozhnikova Y, Mol HG. Current issues involving screening and identification of chemical contaminants in foods by mass spectrometry. Trends Anal Chem. 2015; 69:62–75.
-
(2015)
Trends Anal Chem
, vol.69
, pp. 62-75
-
-
Lehotay, S.J.1
Sapozhnikova, Y.2
Mol, H.G.3
-
190
-
-
84884345032
-
A fast liquid chromatography quadrupole time-of-flight mass spectrometry (LC-QToF-MS) method for the identification of organic explosives and propellants
-
DeTata D, Collins P, McKinley A. A fast liquid chromatography quadrupole time-of-flight mass spectrometry (LC-QToF-MS) method for the identification of organic explosives and propellants. Forensic Sci Int. 2013; 233:63–74.
-
(2013)
Forensic Sci Int
, vol.233
, pp. 63-74
-
-
DeTata, D.1
Collins, P.2
McKinley, A.3
-
191
-
-
70350666338
-
Development of an information-rich LC-MS/MS database for the analysis of drugs in postmortem specimens
-
Liu H-C, Liu RH, Ho H-O, Lin D-L. Development of an information-rich LC-MS/MS database for the analysis of drugs in postmortem specimens. Anal Chem. 2009; 81:9002–9011.
-
(2009)
Anal Chem
, vol.81
, pp. 9002-9011
-
-
Liu, H.-C.1
Liu, R.H.2
Ho, H.-O.3
Lin, D.-L.4
-
192
-
-
77955050026
-
Performance evaluation of three liquid chromatography mass spectrometry methods for broad spectrum drug screening
-
Lynch KL, Breaud AR, Vandenberghe H, Wu AH, Clarke W. Performance evaluation of three liquid chromatography mass spectrometry methods for broad spectrum drug screening. Clin Chim Acta. 2010; 411:1474–1481.
-
(2010)
Clin Chim Acta
, vol.411
, pp. 1474-1481
-
-
Lynch, K.L.1
Breaud, A.R.2
Vandenberghe, H.3
Wu, A.H.4
Clarke, W.5
-
193
-
-
84954511823
-
Comparison of information-dependent acquisition on a tandem quadrupole TOF vs a triple quadrupole linear ion trap mass spectrometer for broad-spectrum drug screening
-
Thoren KL, Colby JM, Shugarts SB, Wu AH, Lynch KL. Comparison of information-dependent acquisition on a tandem quadrupole TOF vs a triple quadrupole linear ion trap mass spectrometer for broad-spectrum drug screening. Clin Chem. 2016; 62:170–178.
-
(2016)
Clin Chem
, vol.62
, pp. 170-178
-
-
Thoren, K.L.1
Colby, J.M.2
Shugarts, S.B.3
Wu, A.H.4
Lynch, K.L.5
-
194
-
-
84857229278
-
Towards a full reference library of MSn spectra. II: A perspective from the library of pesticide spectra extracted from the literature/Internet
-
Milman BL, Zhurkovich IK. Towards a full reference library of MSn spectra. II: A perspective from the library of pesticide spectra extracted from the literature/Internet. Rapid Commun Mass Spectrom. 2011; 25:3697–3705.
-
(2011)
Rapid Commun Mass Spectrom
, vol.25
, pp. 3697-3705
-
-
Milman, B.L.1
Zhurkovich, I.K.2
-
195
-
-
84863785106
-
Strategies for the multi-residue analysis of 100 pesticides by liquid chromatography-triple quadrupole mass spectrometry
-
Núñez O, Gallart-Ayala H, Ferrer I, Moyano E, Galceran MT. Strategies for the multi-residue analysis of 100 pesticides by liquid chromatography-triple quadrupole mass spectrometry. J Chromatogr A. 2012; 1249:164–180.
-
(2012)
J Chromatogr A
, vol.1249
, pp. 164-180
-
-
Núñez, O.1
Gallart-Ayala, H.2
Ferrer, I.3
Moyano, E.4
Galceran, M.T.5
-
196
-
-
84991094772
-
Wide-scope screening of pesticides in fruits and vegetables using information-dependent acquisition employing UHPLC-QTOF-MS and automated MS/MS library searching
-
Wang Z, Cao Y, Ge N, et al. Wide-scope screening of pesticides in fruits and vegetables using information-dependent acquisition employing UHPLC-QTOF-MS and automated MS/MS library searching. Anal Bioanal Chem. 2016; 408:7795–7810.
-
(2016)
Anal Bioanal Chem
, vol.408
, pp. 7795-7810
-
-
Wang, Z.1
Cao, Y.2
Ge, N.3
-
197
-
-
78650524431
-
Interpretation of ESI (+)-MS-MS spectra—towards the identification of “unknowns
-
Weissberg A, Dagan S. Interpretation of ESI (+)-MS-MS spectra—towards the identification of “unknowns”. Int J Mass Spectrom. 2011; 299:158–168.
-
(2011)
Int J Mass Spectrom
, vol.299
, pp. 158-168
-
-
Weissberg, A.1
Dagan, S.2
-
198
-
-
84879908779
-
MS/MS networking guided analysis of molecule and gene cluster families
-
Nguyen DD, Wu C-H, Moree WJ, et al. MS/MS networking guided analysis of molecule and gene cluster families. Proc Natl Acad Sci USA. 2013; 110:E2611–E2620.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. E2611-E2620
-
-
Nguyen, D.D.1
Wu, C.-H.2
Moree, W.J.3
-
199
-
-
84900862294
-
New kids on the block: novel informatics methods for natural product discovery
-
Hufsky F, Scheubert K, Böcker S. New kids on the block: novel informatics methods for natural product discovery. Nat Prod Rep. 2014; 31:807–817.
-
(2014)
Nat Prod Rep
, vol.31
, pp. 807-817
-
-
Hufsky, F.1
Scheubert, K.2
Böcker, S.3
-
200
-
-
85018236072
-
Updates in metabolomics tools and resources: 2014–2015
-
Misra BB, der Hooft JJ. Updates in metabolomics tools and resources: 2014–2015. Electrophoresis. 2015.
-
(2015)
Electrophoresis
-
-
Misra, B.B.1
der Hooft, J.J.2
-
201
-
-
78650173423
-
Computational mass spectrometry for metabolomics: identification of metabolites and small molecules
-
Neumann S, Böcker S. Computational mass spectrometry for metabolomics: identification of metabolites and small molecules. Anal Bioanal Chem. 2010; 398:2779–2788.
-
(2010)
Anal Bioanal Chem
, vol.398
, pp. 2779-2788
-
-
Neumann, S.1
Böcker, S.2
-
202
-
-
40049106183
-
Jane: suggesting journals, finding experts
-
Schuemie MJ, Kors JA. Jane: suggesting journals, finding experts. Bioinformatics. 2008; 24:727–728.
-
(2008)
Bioinformatics
, vol.24
, pp. 727-728
-
-
Schuemie, M.J.1
Kors, J.A.2
|