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Volumn 152, Issue 2, 2010, Pages 566-578

AtMetExpress development: A phytochemical atlas of Arabidopsis development

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 75949126260     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.109.148031     Document Type: Article
Times cited : (155)

References (63)
  • 4
    • 53749101844 scopus 로고    scopus 로고
    • Metabolome analysis of biosynthetic mutants reveals diversity of metabolic changes and allows identification of a large number of new compounds in Arabidopsis thaliana
    • Böttcher C, Roepenack-Lahaye EV, Schmidt J, Schmotz C, Neumann S, Scheel D, Clemens S (2008) Metabolome analysis of biosynthetic mutants reveals diversity of metabolic changes and allows identification of a large number of new compounds in Arabidopsis thaliana. Plant Physiol 147: 2107-2120
    • (2008) Plant Physiol , vol.147 , pp. 2107-2120
    • Böttcher, C.1    Roepenack-Lahaye, E.V.2    Schmidt, J.3    Schmotz, C.4    Neumann, S.5    Scheel, D.6    Clemens, S.7
  • 5
    • 18444378765 scopus 로고    scopus 로고
    • Analysis of the glucosinolate pattern of Arabidopsis thaliana seeds by capillary zone electrophoresis coupled to electrospray ionization-mass spectrometry
    • Bringmann G, Kajahn I, Neususs C, Pelzing M, Laug S, Unger M, Holzgrabe U (2005) Analysis of the glucosinolate pattern of Arabidopsis thaliana seeds by capillary zone electrophoresis coupled to electrospray ionization-mass spectrometry. Electrophoresis 26: 1513-1522
    • (2005) Electrophoresis , vol.26 , pp. 1513-1522
    • Bringmann, G.1    Kajahn, I.2    Neususs, C.3    Pelzing, M.4    Laug, S.5    Unger, M.6    Holzgrabe, U.7
  • 6
    • 0037311116 scopus 로고    scopus 로고
    • Variation of glucosinolate accumulation among different organs and developmental stages of Arabidopsis thaliana
    • Brown PD, Tokuhisa JG, Reichelt M, Gershenzon J (2003) Variation of glucosinolate accumulation among different organs and developmental stages of Arabidopsis thaliana. Phytochemistry 62: 471-481
    • (2003) Phytochemistry , vol.62 , pp. 471-481
    • Brown, P.D.1    Tokuhisa, J.G.2    Reichelt, M.3    Gershenzon, J.4
  • 7
    • 0035800182 scopus 로고    scopus 로고
    • Dirigent proteins and dirigent sites in lignifying tissues
    • Burlat V, Kwon M, Davin LB, Lewis NG (2001) Dirigent proteins and dirigent sites in lignifying tissues. Phytochemistry 57: 883-897
    • (2001) Phytochemistry , vol.57 , pp. 883-897
    • Burlat, V.1    Kwon, M.2    Davin, L.B.3    Lewis, N.G.4
  • 9
    • 0347968038 scopus 로고    scopus 로고
    • NASCArrays: A repository for microarray data generated by NASC's transcriptomics service
    • Craigon DJ, James N, Okyere J, Higgins J, Jotham J, May S (2004) NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res 32: D575-D577
    • (2004) Nucleic Acids Res , vol.32
    • Craigon, D.J.1    James, N.2    Okyere, J.3    Higgins, J.4    Jotham, J.5    May, S.6
  • 10
    • 18044394444 scopus 로고    scopus 로고
    • The secondary metabolism of Arabidopsis thaliana: Growing like a weed
    • D'Auria JC, Gershenzon J (2005) The secondary metabolism of Arabidopsis thaliana: growing like a weed. Curr Opin Plant Biol 8: 308-316
    • (2005) Curr Opin Plant Biol , vol.8 , pp. 308-316
    • D'auria, J.C.1    Gershenzon, J.2
  • 11
    • 23644435769 scopus 로고    scopus 로고
    • Lignin primary structures and dirigent sites
    • Davin LB, Lewis NG (2005) Lignin primary structures and dirigent sites. Curr Opin Biotechnol 16: 407-415
    • (2005) Curr Opin Biotechnol , vol.16 , pp. 407-415
    • Davin, L.B.1    Lewis, N.G.2
  • 12
    • 20444439241 scopus 로고    scopus 로고
    • Lotus japonicus metabolic profiling: Development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions
    • Desbrosses GG, Kopka J, Udvardi MK (2005) Lotus japonicus metabolic profiling: development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions. Plant Physiol 137: 1302-1318
    • (2005) Plant Physiol , vol.137 , pp. 1302-1318
    • Desbrosses, G.G.1    Kopka, J.2    Udvardi, M.K.3
  • 14
    • 38949123203 scopus 로고    scopus 로고
    • Metabolomics reveals novel pathways and differential mechanistic and elicitor-specific responses in phenylpropanoid and isoflavonoid biosynthesis in Medicago truncatula cell cultures
    • Farag MA, Huhman DV, Dixon RA, Sumner LW (2008) Metabolomics reveals novel pathways and differential mechanistic and elicitor-specific responses in phenylpropanoid and isoflavonoid biosynthesis in Medicago truncatula cell cultures. Plant Physiol 146: 387-402
    • (2008) Plant Physiol , vol.146 , pp. 387-402
    • Farag, M.A.1    Huhman, D.V.2    Dixon, R.A.3    Sumner, L.W.4
  • 15
  • 17
    • 64249148286 scopus 로고    scopus 로고
    • A BAHD acyltransferase is expressed in the tapetum of Arabidopsis anthers and is involved in the synthesis of hydroxycinnamoyl spermidines
    • Grienenberger E, Besseau S, Geoffroy P, Debayle D, Heintz D, Lapierre C, Pollet B, Heitz T, Legrand M (2009) A BAHD acyltransferase is expressed in the tapetum of Arabidopsis anthers and is involved in the synthesis of hydroxycinnamoyl spermidines. Plant J 58: 246-259
    • (2009) Plant J , vol.58 , pp. 246-259
    • Grienenberger, E.1    Besseau, S.2    Geoffroy, P.3    Debayle, D.4    Heintz, D.5    Lapierre, C.6    Pollet, B.7    Heitz, T.8    Legrand, M.9
  • 18
    • 34249783437 scopus 로고    scopus 로고
    • Identification of a flavin-monooxygenase as the S-oxygenating enzyme in aliphatic glucosinolate biosynthesis in Arabidopsis
    • Hansen BG, Kliebenstein DJ, Halkier BA (2007) Identification of a flavin-monooxygenase as the S-oxygenating enzyme in aliphatic glucosinolate biosynthesis in Arabidopsis. Plant J 50: 902-910
    • (2007) Plant J , vol.50 , pp. 902-910
    • Hansen, B.G.1    Kliebenstein, D.J.2    Halkier, B.A.3
  • 23
    • 51449121245 scopus 로고    scopus 로고
    • Scopoletin is biosynthesized via orthohydroxylation of feruloyl CoA by a 2-oxoglutarate-dependent dioxygenase in Arabidopsis thaliana
    • Kai K, Mizutani M, Kawamura N, Yamamoto R, Tamai M, Yamaguchi H, Sakata K, Shimizu B (2008) Scopoletin is biosynthesized via orthohydroxylation of feruloyl CoA by a 2-oxoglutarate-dependent dioxygenase in Arabidopsis thaliana. Plant J 55: 989-999
    • (2008) Plant J , vol.55 , pp. 989-999
    • Kai, K.1    Mizutani, M.2    Kawamura, N.3    Yamamoto, R.4    Tamai, M.5    Yamaguchi, H.6    Sakata, K.7    Shimizu, B.8
  • 25
    • 0035802405 scopus 로고    scopus 로고
    • Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): Characterization of horizontally transferred genes with emphasis on the E. coli O157 genome
    • Kanaya S, Kinouchi M, Abe T, Kudo Y, Yamada Y, Nishi T, Mori H, Ikemura T (2001) Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): characterization of horizontally transferred genes with emphasis on the E. coli O157 genome. Gene 276: 89-99
    • (2001) Gene , vol.276 , pp. 89-99
    • Kanaya, S.1    Kinouchi, M.2    Abe, T.3    Kudo, Y.4    Yamada, Y.5    Nishi, T.6    Mori, H.7    Ikemura, T.8
  • 26
    • 34247200577 scopus 로고    scopus 로고
    • The AtGenExpress global stress expression data set: Protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
    • Kilian J, Whitehead D, Horak J, Wanke D, Weinl S, Batistic O, D'Angelo C, Bornberg-Bauer E, Kudla J, Harter K (2007) The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J 50: 347-363
    • (2007) Plant J , vol.50 , pp. 347-363
    • Kilian, J.1    Whitehead, D.2    Horak, J.3    Wanke, D.4    Weinl, S.5    Batistic, O.6    D'angelo, C.7    Bornberg-Bauer, E.8    Kudla, J.9    Harter, K.10
  • 27
    • 0035059714 scopus 로고    scopus 로고
    • Gene duplication in the diversification of secondary metabolism: Tandem 2-oxoglutarate-dependent dioxygenases control glucosinolate biosynthesis in Arabidopsis
    • Kliebenstein DJ, Lambrix VM, Reichelt M, Gershenzon J, Mitchell-Olds T (2001) Gene duplication in the diversification of secondary metabolism: tandem 2-oxoglutarate-dependent dioxygenases control glucosinolate biosynthesis in Arabidopsis. Plant Cell 13: 681-693
    • (2001) Plant Cell , vol.13 , pp. 681-693
    • Kliebenstein, D.J.1    Lambrix, V.M.2    Reichelt, M.3    Gershenzon, J.4    Mitchell-Olds, T.5
  • 29
    • 0030024965 scopus 로고    scopus 로고
    • The Arabidopsis thaliana trp5 mutant has a feedback-resistant anthranilate synthase and elevated soluble tryptophan
    • Li J, Last RL (1996) The Arabidopsis thaliana trp5 mutant has a feedback-resistant anthranilate synthase and elevated soluble tryptophan. Plant Physiol 110: 51-59
    • (1996) Plant Physiol , vol.110 , pp. 51-59
    • Li, J.1    Last, R.L.2
  • 30
    • 33645230252 scopus 로고    scopus 로고
    • Expression and transcriptional regulation of amino acid transporters in plants
    • Liu X, Bush DR (2006) Expression and transcriptional regulation of amino acid transporters in plants. Amino Acids 30: 113-120
    • (2006) Amino Acids , vol.30 , pp. 113-120
    • Liu, X.1    Bush, D.R.2
  • 31
    • 65249132985 scopus 로고    scopus 로고
    • MetAlign: Interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing
    • Lommen A (2009) MetAlign: interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing. Anal Chem 81: 3079-3086
    • (2009) Anal Chem , vol.81 , pp. 3079-3086
    • Lommen, A.1
  • 32
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • Maere S, Heymans K, Kuiper M (2005) BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 21: 3448-3449
    • (2005) Bioinformatics , vol.21 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 33
  • 35
    • 43149118570 scopus 로고    scopus 로고
    • Redirection of the phenylpropanoid pathway to feruloyl malate in Arabidopsis mutants deficient for cinnamoyl-CoA reductase 1
    • Mir Derikvand M, Sierra JB, Ruel K, Pollet B, Do CT, Thevenin J, Buffard D, Jouanin L, Lapierre C (2008) Redirection of the phenylpropanoid pathway to feruloyl malate in Arabidopsis mutants deficient for cinnamoyl-CoA reductase 1. Planta 227: 943-956
    • (2008) Planta , vol.227 , pp. 943-956
    • Mir Derikvand, M.1    Sierra, J.B.2    Ruel, K.3    Pollet, B.4    Do, C.T.5    Thevenin, J.6    Buffard, D.7    Jouanin, L.8    Lapierre, C.9
  • 36
    • 0038460047 scopus 로고    scopus 로고
    • AraCyc: A biochemical pathway database for Arabidopsis
    • Mueller LA, Zhang P, Rhee SY (2003) AraCyc: a biochemical pathway database for Arabidopsis. Plant Physiol 132: 453-460
    • (2003) Plant Physiol , vol.132 , pp. 453-460
    • Mueller, L.A.1    Zhang, P.2    Rhee, S.Y.3
  • 38
    • 47049125619 scopus 로고    scopus 로고
    • Characterization of Arabidopsis thaliana pinoresinol reductase, a new type of enzyme involved in lignan biosynthesis
    • Nakatsubo T, Mizutani M, Suzuki S, Hattori T, Umezawa T (2008) Characterization of Arabidopsis thaliana pinoresinol reductase, a new type of enzyme involved in lignan biosynthesis. J Biol Chem 283: 15550-15557
    • (2008) J Biol Chem , vol.283 , pp. 15550-15557
    • Nakatsubo, T.1    Mizutani, M.2    Suzuki, S.3    Hattori, T.4    Umezawa, T.5
  • 39
    • 58149358971 scopus 로고    scopus 로고
    • Piecing together the transport pathway of aliphatic glucosinolates
    • Nour-Eldin H, Halkier BA (2009) Piecing together the transport pathway of aliphatic glucosinolates. Phytochem Rev 8: 53-67
    • (2009) Phytochem Rev , vol.8 , pp. 53-67
    • Nour-Eldin, H.1    Halkier, B.A.2
  • 42
    • 0036483662 scopus 로고    scopus 로고
    • Composition and content of glucosinolates in developing Arabidopsis thaliana
    • Petersen BL, Chen S, Hansen CH, Olsen CE, Halkier BA (2002) Composition and content of glucosinolates in developing Arabidopsis thaliana. Planta 214: 562-571
    • (2002) Planta , vol.214 , pp. 562-571
    • Petersen, B.L.1    Chen, S.2    Hansen, C.H.3    Olsen, C.E.4    Halkier, B.A.5
  • 43
    • 40549146278 scopus 로고    scopus 로고
    • The TAIR database
    • Poole RL (2007) The TAIR database. Methods Mol Biol 406: 179-212
    • (2007) Methods Mol Biol , vol.406 , pp. 179-212
    • Poole, R.L.1
  • 46
    • 37849020436 scopus 로고    scopus 로고
    • Decoding genes by coexpression networks and metabolomics-"majority report by precogs"
    • Saito K, Hirai MY, Yonekura-Sakakibara K (2008) Decoding genes by coexpression networks and metabolomics-"majority report by precogs". Trends Plant Sci 13: 36-43
    • (2008) Trends Plant Sci , vol.13 , pp. 36-43
    • Saito, K.1    Hirai, M.Y.2    Yonekura-Sakakibara, K.3
  • 47
    • 6444243887 scopus 로고    scopus 로고
    • Molecular cloning and characterization of norcoclaurine synthase, an enzyme catalyzing the first committed step in benzylisoquinoline alkaloid biosynthesis
    • Samanani N, Liscombe DK, Facchini PJ (2004) Molecular cloning and characterization of norcoclaurine synthase, an enzyme catalyzing the first committed step in benzylisoquinoline alkaloid biosynthesis. Plant J 40: 302-313
    • (2004) Plant J , vol.40 , pp. 302-313
    • Samanani, N.1    Liscombe, D.K.2    Facchini, P.J.3
  • 49
    • 0035965253 scopus 로고    scopus 로고
    • CYP98A3 from Arabidopsis thaliana is a 3#-hydroxylase of phenolic esters, a missing link in the phenylpropanoid pathway
    • Schoch G, Goepfert S, Morant M, Hehn A, Meyer D, Ullmann P, Werck-Reichhart D (2001) CYP98A3 from Arabidopsis thaliana is a 3#-hydroxylase of phenolic esters, a missing link in the phenylpropanoid pathway. J Biol Chem 276: 36566-36574
    • (2001) J Biol Chem , vol.276 , pp. 36566-36574
    • Schoch, G.1    Goepfert, S.2    Morant, M.3    Hehn, A.4    Meyer, D.5    Ullmann, P.6    Werck-Reichhart, D.7
  • 53
    • 0034782070 scopus 로고    scopus 로고
    • The sng2 mutant of Arabidopsis is defective in the gene encoding the serine carboxypeptidase-like protein sinapoylglucose:Choline sinapoyltransferase
    • Shirley AM, McMichael CM, Chapple C (2001) The sng2 mutant of Arabidopsis is defective in the gene encoding the serine carboxypeptidase-like protein sinapoylglucose:choline sinapoyltransferase. Plant J 28: 83-94
    • (2001) Plant J , vol.28 , pp. 83-94
    • Shirley, A.M.1    McMichael, C.M.2    Chapple, C.3
  • 54
    • 0000881748 scopus 로고
    • Optimization and testing of mass-spectral library search algorithms for compound identification
    • Stein SE, Scott DR (1994) Optimization and testing of mass-spectral library search algorithms for compound identification. J Am Soc Mass Spectrom 5: 859-866
    • (1994) J Am Soc Mass Spectrom , vol.5 , pp. 859-866
    • Stein, S.E.1    Scott, D.R.2
  • 57
    • 42449113931 scopus 로고    scopus 로고
    • Seeing is believing: Engineering anthocyanin and carotenoid biosynthetic pathways
    • Tanaka Y, Ohmiya A (2008) Seeing is believing: engineering anthocyanin and carotenoid biosynthetic pathways. Curr Opin Biotechnol 19: 190-197
    • (2008) Curr Opin Biotechnol , vol.19 , pp. 190-197
    • Tanaka, Y.1    Ohmiya, A.2
  • 58
    • 40949155146 scopus 로고    scopus 로고
    • Altered expression of barley proline transporter causes different growth responses in Arabidopsis
    • Ueda A, Shi W, Shimada T, Miyake H, Takabe T (2008) Altered expression of barley proline transporter causes different growth responses in Arabidopsis. Planta 227: 277-286
    • (2008) Planta , vol.227 , pp. 277-286
    • Ueda, A.1    Shi, W.2    Shimada, T.3    Miyake, H.4    Takabe, T.5
  • 59
    • 40349091686 scopus 로고    scopus 로고
    • An "electronic fluorescent pictograph" browser for exploring and analyzing large-scale biological data sets
    • Winter D, Vinegar B, Nahal H, Ammar R, Wilson GV, Provart NJ (2007) An "electronic fluorescent pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS One 2: e718
    • (2007) Plos One , vol.e718 , pp. 2
    • Winter, D.1    Vinegar, B.2    Nahal, H.3    Ammar, R.4    Wilson, G.V.5    Provart, N.J.6
  • 60
    • 55949121218 scopus 로고    scopus 로고
    • Mutation of a rice gene encoding a phenylalanine biosynthetic enzyme results in accumulation of phenylalanine and tryptophan
    • Yamada T, Matsuda F, Kasai K, Fukuoka S, Kitamura K, Tozawa Y, Miyagawa H, Wakasa K (2008) Mutation of a rice gene encoding a phenylalanine biosynthetic enzyme results in accumulation of phenylalanine and tryptophan. Plant Cell 20: 1316-1329
    • (2008) Plant Cell , vol.20 , pp. 1316-1329
    • Yamada, T.1    Matsuda, F.2    Kasai, K.3    Fukuoka, S.4    Kitamura, K.5    Tozawa, Y.6    Miyagawa, H.7    Wakasa, K.8
  • 61
    • 70350214653 scopus 로고    scopus 로고
    • Functional genomics for plant natural product biosynthesis
    • Yonekura-Sakakibara K, Saito K (2009) Functional genomics for plant natural product biosynthesis. Nat Prod Rep 26: 1466-1487
    • (2009) Nat Prod Rep , vol.26 , pp. 1466-1487
    • Yonekura-Sakakibara, K.1    Saito, K.2
  • 63
    • 34447502537 scopus 로고    scopus 로고
    • Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression and reverse genetics
    • Yonekura-Sakakibara K, Tohge T, Niida R, Saito K (2007) Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression and reverse genetics. J Biol Chem 282: 14932-14941
    • (2007) J Biol Chem , vol.282 , pp. 14932-14941
    • Yonekura-Sakakibara, K.1    Tohge, T.2    Niida, R.3    Saito, K.4


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