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Volumn 15, Issue 7, 2016, Pages 2501-2514

SWATH mass spectrometry performance using extended peptide MS/MS assay libraries

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDES AND PROTEINS; PROTEOME; PEPTIDE LIBRARY;

EID: 84977269777     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M115.055558     Document Type: Article
Times cited : (92)

References (38)
  • 1
    • 84857811076 scopus 로고    scopus 로고
    • Accurate peptide fragment mass analysis: Multiplexed peptide identification and quantification
    • Weisbrod CR, Eng JK, Hoopmann MR, Baker T and Bruce JE (2012) Accurate peptide fragment mass analysis: multiplexed peptide identification and quantification. Journal of proteome research 11, 1621-1632
    • (2012) Journal of Proteome Research , vol.11 , pp. 1621-1632
    • Weisbrod, C.R.1    Eng, J.K.2    Hoopmann, M.R.3    Baker, T.4    Bruce, J.E.5
  • 2
    • 84861860481 scopus 로고    scopus 로고
    • Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: A new concept for consistent and accurate proteome analysis
    • Gillet, Ludovic C., et al. "Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis." Molecular & Cellular Proteomics 11.6 (2012): O111-016717
    • (2012) Molecular & Cellular Proteomics , vol.11 , Issue.6 , pp. 0111-016717
    • Gillet Ludovic, C.1
  • 3
    • 14744293536 scopus 로고    scopus 로고
    • Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra
    • Venable, J. D., Dong, M. Q., Wohlschlegel, J., Dillin, A., and Yates, J. R. (2004) Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra. Nat. Methods 1, 39-45
    • (2004) Nat. Methods , vol.1 , pp. 39-45
    • Venable, J.D.1    Dong, M.Q.2    Wohlschlegel, J.3    Dillin, A.4    Yates, J.R.5
  • 7
    • 77957990113 scopus 로고    scopus 로고
    • Proteomics on an Orbitrap bench-top mass spectrometer using all-ion fragmentation
    • Geiger, T., Cox, J., and Mann, M. (2010) Proteomics on an Orbitrap bench-top mass spectrometer using all-ion fragmentation. Mol. Cell. Proteom-ics 9, 2252-2261
    • (2010) Mol. Cell. Proteom-ics , vol.9 , pp. 2252-2261
    • Geiger, T.1    Cox, J.2    Mann, M.3
  • 8
    • 48249092350 scopus 로고    scopus 로고
    • Overview of tandem mass spectrometry (MS/MS) database search algorithms
    • Kapp, E., and Schü tz, F. (2007) Overview of tandem mass spectrometry (MS/MS) database search algorithms. Current Protocols Protein Sci. 25, 1-19
    • (2007) Current Protocols Protein Sci. , vol.25 , pp. 1-19
    • Kapp, E.1    Schütz, F.2
  • 10
    • 84923678973 scopus 로고    scopus 로고
    • A repository of assays to quantify 10, 000 human proteins by SWATH-MS
    • Rosenberger G, Koh CC, Guo T, et al. A repository of assays to quantify 10, 000 human proteins by SWATH-MS. Scientific Data. 2014;1:140031. doi:10.1038/sdata.2014.31
    • (2014) Scientific Data. , vol.1 , pp. 140031
    • Rosenberger, G.1    Koh, C.C.2    Guo, T.3
  • 11
    • 84903692527 scopus 로고    scopus 로고
    • Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness
    • Liu, Y., Chen, J., Sethi, A., Li, Q. K., Chen, L., Collins, B., Gillet, L. C., Wollscheid, B., Zhang, H., and Aebersold, R. (2014) Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness. Mol. Cell. Proteomics 13, 1753-1768
    • (2014) Mol. Cell. Proteomics , vol.13 , pp. 1753-1768
    • Liu, Y.1    Chen, J.2    Sethi, A.3    Li, Q.K.4    Chen, L.5    Collins, B.6    Gillet, L.C.7    Wollscheid, B.8    Zhang, H.9    Aebersold, R.10
  • 15
    • 33645813378 scopus 로고    scopus 로고
    • Mass spectrometry and protein anal-ysis
    • Domon, B., and Aebersold, R. (2006) Mass spectrometry and protein anal-ysis. science 312, 212-217
    • (2006) Science , vol.312 , pp. 212-217
    • Domon, B.1    Aebersold, R.2
  • 16
    • 79954569537 scopus 로고    scopus 로고
    • Faster, quantitative, and accurate precursor acquisition independent from ion count
    • Panchaud, A., Jung, S., Shaffer, S. A., Aitchison, J. D., and Goodlett, D. R. (2011) Faster, quantitative, and accurate precursor acquisition independent from ion count. Analytical chemistry 83, 2250-2257
    • (2011) Analytical Chemistry , vol.83 , pp. 2250-2257
    • Panchaud, A.1    Jung, S.2    Shaffer, S.A.3    Aitchison, J.D.4    Goodlett, D.R.5
  • 17
  • 22
    • 84905695342 scopus 로고    scopus 로고
    • Expansion of the ion library for mining swath-ms data through fractionation proteomics
    • Zi, J., Zhang, S., Zhou, R., Zhou, B., Xu, S., Hou, G., Tan, F., Wen, B., Wang, Q., Lin, L., and Liu, S. (2014) Expansion of the ion library for mining swath-ms data through fractionation proteomics. Anal. Chem. 86, 7242-7246
    • (2014) Anal. Chem. , vol.86 , pp. 7242-7246
    • Zi, J.1    Zhang, S.2    Zhou, R.3    Zhou, B.4    Xu, S.5    Hou, G.6    Tan, F.7    Wen, B.8    Wang, Q.9    Lin, L.10    Liu, S.11
  • 27
    • 84904094826 scopus 로고    scopus 로고
    • Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics
    • Toprak, U. H., Gillet, L. C., Maiolica, A., Navarro, P., Leitner, A., and Aebersold, R. (2014) Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics. Mol. Cell. Proteomics 13, 2056-2071
    • (2014) Mol. Cell. Proteomics , vol.13 , pp. 2056-2071
    • Toprak, U.H.1    Gillet, L.C.2    Maiolica, A.3    Navarro, P.4    Leitner, A.5    Aebersold, R.6
  • 28
    • 84885629524 scopus 로고    scopus 로고
    • Comparative analysis of mass spectral similarity measures on peak alignment for comprehensive two-dimensional gas chromatography mass spectrometry
    • Kim S and Zhang X (2013) Comparative analysis of mass spectral similarity measures on peak alignment for comprehensive two-dimensional gas chromatography mass spectrometry. Computational and mathematical methods in medicine 2013
    • (2013) Computational and Mathematical Methods in Medicine 2013
    • Kim, S.1    Zhang, X.2
  • 29
    • 33751208935 scopus 로고    scopus 로고
    • Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: Application to 300-and 100-Å pore size C18 sorbents
    • Krokhin, O. V. (2006) Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: application to 300-and 100-Å pore size C18 sorbents. Anal. Chem. 78, 7785-7795
    • (2006) Anal. Chem. , vol.78 , pp. 7785-7795
    • Krokhin, O.V.1
  • 32
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Royal Statist. Soc. Series B (Methodological), 57, 289-300
    • (1995) J. Royal Statist. Soc. Series B (Methodological) , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 34
    • 79953184690 scopus 로고    scopus 로고
    • Multiple hypothesis testing in proteomics: A strategy for experimental work
    • Diz, A. P, Carvajal-Rodríguez, A., and Skibinski, D. O. (2011) Multiple hypothesis testing in proteomics: a strategy for experimental work. Mol. Cell. Proteomics 10, M110.004374
    • (2011) Mol. Cell. Proteomics , vol.10 , pp. M110004374
    • Diz, A.P.1    Carvajal-Rodríguez, A.2    Skibinski, D.O.3
  • 35
    • 84946826849 scopus 로고    scopus 로고
    • Advancing urinary protein biomarker discovery by data-independent acquisition on a quadrupole-orbitrap mass spectrometer
    • Muntel, J., Xuan, Y., Berger, S. T., Reiter, L., Bachur, R., Kentsis, A., and Steen, H. (2015) Advancing urinary protein biomarker discovery by data-independent acquisition on a quadrupole-orbitrap mass spectrometer. J. Proteome Res. 14, 4752-4762
    • (2015) J. Proteome Res. , vol.14 , pp. 4752-4762
    • Muntel, J.1    Xuan, Y.2    Berger, S.T.3    Reiter, L.4    Bachur, R.5    Kentsis, A.6    Steen, H.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.