-
1
-
-
84937736036
-
5-formylcytosine can be a stable DNA modification in mammals
-
Bachman, M., Uribe-Lewis, S., Yang, X., Burgess, H.E., Iurlaro, M., Reik, W., Murrell, A., Balasubramanian, S., 5-formylcytosine can be a stable DNA modification in mammals. Nat. Chem. Biol. 11 (2015), 555–557.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 555-557
-
-
Bachman, M.1
Uribe-Lewis, S.2
Yang, X.3
Burgess, H.E.4
Iurlaro, M.5
Reik, W.6
Murrell, A.7
Balasubramanian, S.8
-
2
-
-
70350627509
-
Epigenetic reversion of post-implantation epiblast to pluripotent embryonic stem cells
-
Bao, S., Tang, F., Li, X., Hayashi, K., Gillich, A., Lao, K., Surani, M.A., Epigenetic reversion of post-implantation epiblast to pluripotent embryonic stem cells. Nature 461 (2009), 1292–1295.
-
(2009)
Nature
, vol.461
, pp. 1292-1295
-
-
Bao, S.1
Tang, F.2
Li, X.3
Hayashi, K.4
Gillich, A.5
Lao, K.6
Surani, M.A.7
-
3
-
-
84899084088
-
Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution
-
Booth, M.J., Marsico, G., Bachman, M., Beraldi, D., Balasubramanian, S., Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution. Nat. Chem. 6 (2014), 435–440.
-
(2014)
Nat. Chem.
, vol.6
, pp. 435-440
-
-
Booth, M.J.1
Marsico, G.2
Bachman, M.3
Beraldi, D.4
Balasubramanian, S.5
-
4
-
-
84937857359
-
Single-cell chromatin accessibility reveals principles of regulatory variation
-
Buenrostro, J.D., Wu, B., Litzenburger, U.M., Ruff, D., Gonzales, M.L., Snyder, M.P., Chang, H.Y., Greenleaf, W.J., Single-cell chromatin accessibility reveals principles of regulatory variation. Nature 523 (2015), 486–490.
-
(2015)
Nature
, vol.523
, pp. 486-490
-
-
Buenrostro, J.D.1
Wu, B.2
Litzenburger, U.M.3
Ruff, D.4
Gonzales, M.L.5
Snyder, M.P.6
Chang, H.Y.7
Greenleaf, W.J.8
-
5
-
-
84930006926
-
Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing
-
Cusanovich, D.A., Daza, R., Adey, A., Pliner, H.A., Christiansen, L., Gunderson, K.L., Steemers, F.J., Trapnell, C., Shendure, J., Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing. Science 348 (2015), 910–914.
-
(2015)
Science
, vol.348
, pp. 910-914
-
-
Cusanovich, D.A.1
Daza, R.2
Adey, A.3
Pliner, H.A.4
Christiansen, L.5
Gunderson, K.L.6
Steemers, F.J.7
Trapnell, C.8
Shendure, J.9
-
6
-
-
84892179132
-
Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells
-
Deng, Q., Ramsköld, D., Reinius, B., Sandberg, R., Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells. Science 343 (2014), 193–196.
-
(2014)
Science
, vol.343
, pp. 193-196
-
-
Deng, Q.1
Ramsköld, D.2
Reinius, B.3
Sandberg, R.4
-
7
-
-
84924423596
-
Integrated genome and transcriptome sequencing of the same cell
-
Dey, S.S., Kester, L., Spanjaard, B., Bienko, M., van Oudenaarden, A., Integrated genome and transcriptome sequencing of the same cell. Nat. Biotechnol. 33 (2015), 285–289.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 285-289
-
-
Dey, S.S.1
Kester, L.2
Spanjaard, B.3
Bienko, M.4
van Oudenaarden, A.5
-
8
-
-
84924601067
-
Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics
-
Farlik, M., Sheffield, N.C., Nuzzo, A., Datlinger, P., Schönegger, A., Klughammer, J., Bock, C., Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics. Cell Rep. 10 (2015), 1386–1397.
-
(2015)
Cell Rep.
, vol.10
, pp. 1386-1397
-
-
Farlik, M.1
Sheffield, N.C.2
Nuzzo, A.3
Datlinger, P.4
Schönegger, A.5
Klughammer, J.6
Bock, C.7
-
9
-
-
84890526238
-
Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing
-
Guo, H., Zhu, P., Wu, X., Li, X., Wen, L., Tang, F., Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing. Genome Res. 23 (2013), 2126–2135.
-
(2013)
Genome Res.
, vol.23
, pp. 2126-2135
-
-
Guo, H.1
Zhu, P.2
Wu, X.3
Li, X.4
Wen, L.5
Tang, F.6
-
10
-
-
84914817563
-
Active and passive demethylation of male and female pronuclear DNA in the mammalian zygote
-
Guo, F., Li, X., Liang, D., Li, T., Zhu, P., Guo, H., Wu, X., Wen, L., Gu, T.P., Hu, B., et al. Active and passive demethylation of male and female pronuclear DNA in the mammalian zygote. Cell Stem Cell 15 (2014), 447–458.
-
(2014)
Cell Stem Cell
, vol.15
, pp. 447-458
-
-
Guo, F.1
Li, X.2
Liang, D.3
Li, T.4
Zhu, P.5
Guo, H.6
Wu, X.7
Wen, L.8
Gu, T.P.9
Hu, B.10
-
11
-
-
84877690724
-
Beyond DNA: programming and inheritance of parental methylomes
-
Hackett, J.A., Surani, M.A., Beyond DNA: programming and inheritance of parental methylomes. Cell 153 (2013), 737–739.
-
(2013)
Cell
, vol.153
, pp. 737-739
-
-
Hackett, J.A.1
Surani, M.A.2
-
12
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
He, Y.F., Li, B.Z., Li, Z., Liu, P., Wang, Y., Tang, Q., Ding, J., Jia, Y., Chen, Z., Li, L., et al. Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 333 (2011), 1303–1307.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.F.1
Li, B.Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
-
13
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz, S., Benner, C., Spann, N., Bertolino, E., Lin, Y.C., Laslo, P., Cheng, J.X., Murre, C., Singh, H., Glass, C.K., Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38 (2010), 576–589.
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
14
-
-
84960091878
-
Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas
-
Hou, Y., Guo, H., Cao, C., Li, X., Hu, B., Zhu, P., Wu, X., Wen, L., Tang, F., Huang, Y., Peng, J., Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. Cell Res. 26 (2016), 304–319.
-
(2016)
Cell Res.
, vol.26
, pp. 304-319
-
-
Hou, Y.1
Guo, H.2
Cao, C.3
Li, X.4
Hu, B.5
Zhu, P.6
Wu, X.7
Wen, L.8
Tang, F.9
Huang, Y.10
Peng, J.11
-
15
-
-
80054097425
-
Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos
-
Inoue, A., Zhang, Y., Replication-dependent loss of 5-hydroxymethylcytosine in mouse preimplantation embryos. Science, 334, 2011, 194.
-
(2011)
Science
, vol.334
, pp. 194
-
-
Inoue, A.1
Zhang, Y.2
-
16
-
-
82655187105
-
Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development
-
Inoue, A., Shen, L., Dai, Q., He, C., Zhang, Y., Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development. Cell Res. 21 (2011), 1670–1676.
-
(2011)
Cell Res.
, vol.21
, pp. 1670-1676
-
-
Inoue, A.1
Shen, L.2
Dai, Q.3
He, C.4
Zhang, Y.5
-
17
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
-
Ito, S., D'Alessio, A.C., Taranova, O.V., Hong, K., Sowers, L.C., Zhang, Y., Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466 (2010), 1129–1133.
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
18
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito, S., Shen, L., Dai, Q., Wu, S.C., Collins, L.B., Swenberg, J.A., He, C., Zhang, Y., Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333 (2011), 1300–1303.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
19
-
-
84886035297
-
A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation
-
Iurlaro, M., Ficz, G., Oxley, D., Raiber, E.A., Bachman, M., Booth, M.J., Andrews, S., Balasubramanian, S., Reik, W., A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation. Genome Biol., 14, 2013, R119.
-
(2013)
Genome Biol.
, vol.14
, pp. R119
-
-
Iurlaro, M.1
Ficz, G.2
Oxley, D.3
Raiber, E.A.4
Bachman, M.5
Booth, M.J.6
Andrews, S.7
Balasubramanian, S.8
Reik, W.9
-
20
-
-
84949227165
-
Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples
-
Jin, W., Tang, Q., Wan, M., Cui, K., Zhang, Y., Ren, G., Ni, B., Sklar, J., Przytycka, T.M., Childs, R., et al. Genome-wide detection of DNase I hypersensitive sites in single cells and FFPE tissue samples. Nature 528 (2015), 142–146.
-
(2015)
Nature
, vol.528
, pp. 142-146
-
-
Jin, W.1
Tang, Q.2
Wan, M.3
Cui, K.4
Zhang, Y.5
Ren, G.6
Ni, B.7
Sklar, J.8
Przytycka, T.M.9
Childs, R.10
-
21
-
-
0036773784
-
Mutagenicity of 5-formylcytosine, an oxidation product of 5-methylcytosine, in DNA in mammalian cells
-
Kamiya, H., Tsuchiya, H., Karino, N., Ueno, Y., Matsuda, A., Harashima, H., Mutagenicity of 5-formylcytosine, an oxidation product of 5-methylcytosine, in DNA in mammalian cells. J. Biochem. 132 (2002), 551–555.
-
(2002)
J. Biochem.
, vol.132
, pp. 551-555
-
-
Kamiya, H.1
Tsuchiya, H.2
Karino, N.3
Ueno, Y.4
Matsuda, A.5
Harashima, H.6
-
22
-
-
0141815478
-
Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes
-
Kent, W.J., Baertsch, R., Hinrichs, A., Miller, W., Haussler, D., Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc. Natl. Acad. Sci. USA 100 (2003), 11484–11489.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 11484-11489
-
-
Kent, W.J.1
Baertsch, R.2
Hinrichs, A.3
Miller, W.4
Haussler, D.5
-
23
-
-
84948587544
-
Genome-wide maps of nuclear lamina interactions in single human cells
-
Kind, J., Pagie, L., de Vries, S.S., Nahidiazar, L., Dey, S.S., Bienko, M., Zhan, Y., Lajoie, B., de Graaf, C.A., Amendola, M., et al. Genome-wide maps of nuclear lamina interactions in single human cells. Cell 163 (2015), 134–147.
-
(2015)
Cell
, vol.163
, pp. 134-147
-
-
Kind, J.1
Pagie, L.2
de Vries, S.S.3
Nahidiazar, L.4
Dey, S.S.5
Bienko, M.6
Zhan, Y.7
Lajoie, B.8
de Graaf, C.A.9
Amendola, M.10
-
24
-
-
66149123748
-
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
-
Kriaucionis, S., Heintz, N., The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 324 (2009), 929–930.
-
(2009)
Science
, vol.324
, pp. 929-930
-
-
Kriaucionis, S.1
Heintz, N.2
-
25
-
-
79957868920
-
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
-
Krueger, F., Andrews, S.R., Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 27 (2011), 1571–1572.
-
(2011)
Bioinformatics
, vol.27
, pp. 1571-1572
-
-
Krueger, F.1
Andrews, S.R.2
-
26
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., 1000 Genome Project Data Processing Subgroup. The sequence alignment/map format and SAMtools. Bioinformatics 25 (2009), 2078–2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
27
-
-
84924441282
-
Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics
-
Lu, X., Han, D., Zhao, B.S., Song, C.X., Zhang, L.S., Doré, L.C., He, C., Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics. Cell Res. 25 (2015), 386–389.
-
(2015)
Cell Res.
, vol.25
, pp. 386-389
-
-
Lu, X.1
Han, D.2
Zhao, B.S.3
Song, C.X.4
Zhang, L.S.5
Doré, L.C.6
He, C.7
-
28
-
-
33746392927
-
Feeder-independent culture of human embryonic stem cells
-
Ludwig, T.E., Bergendahl, V., Levenstein, M.E., Yu, J., Probasco, M.D., Thomson, J.A., Feeder-independent culture of human embryonic stem cells. Nat. Methods 3 (2006), 637–646.
-
(2006)
Nat. Methods
, vol.3
, pp. 637-646
-
-
Ludwig, T.E.1
Bergendahl, V.2
Levenstein, M.E.3
Yu, J.4
Probasco, M.D.5
Thomson, J.A.6
-
29
-
-
84930178333
-
G&T-seq: parallel sequencing of single-cell genomes and transcriptomes
-
Macaulay, I.C., Haerty, W., Kumar, P., Li, Y.I., Hu, T.X., Teng, M.J., Goolam, M., Saurat, N., Coupland, P., Shirley, L.M., et al. G&T-seq: parallel sequencing of single-cell genomes and transcriptomes. Nat. Methods 12 (2015), 519–522.
-
(2015)
Nat. Methods
, vol.12
, pp. 519-522
-
-
Macaulay, I.C.1
Haerty, W.2
Kumar, P.3
Li, Y.I.4
Hu, T.X.5
Teng, M.J.6
Goolam, M.7
Saurat, N.8
Coupland, P.9
Shirley, L.M.10
-
30
-
-
80053917872
-
Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites
-
Maiti, A., Drohat, A.C., Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites. J. Biol. Chem. 286 (2011), 35334–35338.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 35334-35338
-
-
Maiti, A.1
Drohat, A.C.2
-
31
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen, T.S., Ku, M., Jaffe, D.B., Issac, B., Lieberman, E., Giannoukos, G., Alvarez, P., Brockman, W., Kim, T.K., Koche, R.P., et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448 (2007), 553–560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
-
32
-
-
84981312051
-
Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction
-
Mooijman, D., Dey, S.S., Boisset, J.C., Crosetto, N., van Oudenaarden, A., Single-cell 5hmC sequencing reveals chromosome-wide cell-to-cell variability and enables lineage reconstruction. Nat. Biotechnol. 34 (2016), 852–856.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 852-856
-
-
Mooijman, D.1
Dey, S.S.2
Boisset, J.C.3
Crosetto, N.4
van Oudenaarden, A.5
-
33
-
-
82455192844
-
Improved synthesis and mutagenicity of oligonucleotides containing 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxylcytosine
-
Münzel, M., Lischke, U., Stathis, D., Pfaffeneder, T., Gnerlich, F.A., Deiml, C.A., Koch, S.C., Karaghiosoff, K., Carell, T., Improved synthesis and mutagenicity of oligonucleotides containing 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxylcytosine. Chemistry 17 (2011), 13782–13788.
-
(2011)
Chemistry
, vol.17
, pp. 13782-13788
-
-
Münzel, M.1
Lischke, U.2
Stathis, D.3
Pfaffeneder, T.4
Gnerlich, F.A.5
Deiml, C.A.6
Koch, S.C.7
Karaghiosoff, K.8
Carell, T.9
-
34
-
-
84885617426
-
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
-
Nagano, T., Lubling, Y., Stevens, T.J., Schoenfelder, S., Yaffe, E., Dean, W., Laue, E.D., Tanay, A., Fraser, P., Single-cell Hi-C reveals cell-to-cell variability in chromosome structure. Nature 502 (2013), 59–64.
-
(2013)
Nature
, vol.502
, pp. 59-64
-
-
Nagano, T.1
Lubling, Y.2
Stevens, T.J.3
Schoenfelder, S.4
Yaffe, E.5
Dean, W.6
Laue, E.D.7
Tanay, A.8
Fraser, P.9
-
35
-
-
84923377643
-
Single-base resolution analysis of 5-formyl and 5-carboxyl cytosine reveals promoter DNA methylation dynamics
-
Neri, F., Incarnato, D., Krepelova, A., Rapelli, S., Anselmi, F., Parlato, C., Medana, C., Dal Bello, F., Oliviero, S., Single-base resolution analysis of 5-formyl and 5-carboxyl cytosine reveals promoter DNA methylation dynamics. Cell Rep. 10 (2015), 674–683.
-
(2015)
Cell Rep.
, vol.10
, pp. 674-683
-
-
Neri, F.1
Incarnato, D.2
Krepelova, A.3
Rapelli, S.4
Anselmi, F.5
Parlato, C.6
Medana, C.7
Dal Bello, F.8
Oliviero, S.9
-
36
-
-
79960626636
-
The discovery of 5-formylcytosine in embryonic stem cell DNA
-
Pfaffeneder, T., Hackner, B., Truss, M., Münzel, M., Müller, M., Deiml, C.A., Hagemeier, C., Carell, T., The discovery of 5-formylcytosine in embryonic stem cell DNA. Angew. Chem. Int. Ed. Engl. 50 (2011), 7008–7012.
-
(2011)
Angew. Chem. Int. Ed. Engl.
, vol.50
, pp. 7008-7012
-
-
Pfaffeneder, T.1
Hackner, B.2
Truss, M.3
Münzel, M.4
Müller, M.5
Deiml, C.A.6
Hagemeier, C.7
Carell, T.8
-
37
-
-
84865061978
-
Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase
-
Raiber, E.A., Beraldi, D., Ficz, G., Burgess, H.E., Branco, M.R., Murat, P., Oxley, D., Booth, M.J., Reik, W., Balasubramanian, S., Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase. Genome Biol., 13, 2012, R69.
-
(2012)
Genome Biol.
, vol.13
, pp. R69
-
-
Raiber, E.A.1
Beraldi, D.2
Ficz, G.3
Burgess, H.E.4
Branco, M.R.5
Murat, P.6
Oxley, D.7
Booth, M.J.8
Reik, W.9
Balasubramanian, S.10
-
38
-
-
84946545109
-
Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
-
Rotem, A., Ram, O., Shoresh, N., Sperling, R.A., Goren, A., Weitz, D.A., Bernstein, B.E., Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state. Nat. Biotechnol. 33 (2015), 1165–1172.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 1165-1172
-
-
Rotem, A.1
Ram, O.2
Shoresh, N.3
Sperling, R.A.4
Goren, A.5
Weitz, D.A.6
Bernstein, B.E.7
-
39
-
-
82855176833
-
Epigenetic reprogramming in mouse pre-implantation development and primordial germ cells
-
Saitou, M., Kagiwada, S., Kurimoto, K., Epigenetic reprogramming in mouse pre-implantation development and primordial germ cells. Development 139 (2012), 15–31.
-
(2012)
Development
, vol.139
, pp. 15-31
-
-
Saitou, M.1
Kagiwada, S.2
Kurimoto, K.3
-
40
-
-
84885130399
-
Deamination, oxidation, and C-C bond cleavage reactivity of 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxycytosine
-
Schiesser, S., Pfaffeneder, T., Sadeghian, K., Hackner, B., Steigenberger, B., Schröder, A.S., Steinbacher, J., Kashiwazaki, G., Höfner, G., Wanner, K.T., et al. Deamination, oxidation, and C-C bond cleavage reactivity of 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxycytosine. J. Am. Chem. Soc. 135 (2013), 14593–14599.
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 14593-14599
-
-
Schiesser, S.1
Pfaffeneder, T.2
Sadeghian, K.3
Hackner, B.4
Steigenberger, B.5
Schröder, A.S.6
Steinbacher, J.7
Kashiwazaki, G.8
Höfner, G.9
Wanner, K.T.10
-
41
-
-
84856228222
-
Synthesis of quinolines via Friedländer reaction in water and under catalyst-free conditions
-
Shen, Q., Wang, L., Yu, J., Liu, M., Qiu, J., Fang, L., Guo, F., Tang, J., Synthesis of quinolines via Friedländer reaction in water and under catalyst-free conditions. Synthesis 44 (2011), 389–392.
-
(2011)
Synthesis
, vol.44
, pp. 389-392
-
-
Shen, Q.1
Wang, L.2
Yu, J.3
Liu, M.4
Qiu, J.5
Fang, L.6
Guo, F.7
Tang, J.8
-
42
-
-
84876946045
-
Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics
-
Shen, L., Wu, H., Diep, D., Yamaguchi, S., D'Alessio, A.C., Fung, H.L., Zhang, K., Zhang, Y., Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics. Cell 153 (2013), 692–706.
-
(2013)
Cell
, vol.153
, pp. 692-706
-
-
Shen, L.1
Wu, H.2
Diep, D.3
Yamaguchi, S.4
D'Alessio, A.C.5
Fung, H.L.6
Zhang, K.7
Zhang, Y.8
-
43
-
-
84914818905
-
Tet3 and DNA replication mediate demethylation of both the maternal and paternal genomes in mouse zygotes
-
Shen, L., Inoue, A., He, J., Liu, Y., Lu, F., Zhang, Y., Tet3 and DNA replication mediate demethylation of both the maternal and paternal genomes in mouse zygotes. Cell Stem Cell 15 (2014), 459–470.
-
(2014)
Cell Stem Cell
, vol.15
, pp. 459-470
-
-
Shen, L.1
Inoue, A.2
He, J.3
Liu, Y.4
Lu, F.5
Zhang, Y.6
-
44
-
-
84905405443
-
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
-
Smallwood, S.A., Lee, H.J., Angermueller, C., Krueger, F., Saadeh, H., Peat, J., Andrews, S.R., Stegle, O., Reik, W., Kelsey, G., Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity. Nat. Methods 11 (2014), 817–820.
-
(2014)
Nat. Methods
, vol.11
, pp. 817-820
-
-
Smallwood, S.A.1
Lee, H.J.2
Angermueller, C.3
Krueger, F.4
Saadeh, H.5
Peat, J.6
Andrews, S.R.7
Stegle, O.8
Reik, W.9
Kelsey, G.10
-
45
-
-
84859910536
-
A unique regulatory phase of DNA methylation in the early mammalian embryo
-
Smith, Z.D., Chan, M.M., Mikkelsen, T.S., Gu, H., Gnirke, A., Regev, A., Meissner, A., A unique regulatory phase of DNA methylation in the early mammalian embryo. Nature 484 (2012), 339–344.
-
(2012)
Nature
, vol.484
, pp. 339-344
-
-
Smith, Z.D.1
Chan, M.M.2
Mikkelsen, T.S.3
Gu, H.4
Gnirke, A.5
Regev, A.6
Meissner, A.7
-
46
-
-
84869392308
-
Mapping recently identified nucleotide variants in the genome and transcriptome
-
Song, C.X., Yi, C., He, C., Mapping recently identified nucleotide variants in the genome and transcriptome. Nat. Biotechnol. 30 (2012), 1107–1116.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 1107-1116
-
-
Song, C.X.1
Yi, C.2
He, C.3
-
47
-
-
84876907152
-
Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming
-
Song, C.X., Szulwach, K.E., Dai, Q., Fu, Y., Mao, S.Q., Lin, L., Street, C., Li, Y., Poidevin, M., Wu, H., et al. Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming. Cell 153 (2013), 678–691.
-
(2013)
Cell
, vol.153
, pp. 678-691
-
-
Song, C.X.1
Szulwach, K.E.2
Dai, Q.3
Fu, Y.4
Mao, S.Q.5
Lin, L.6
Street, C.7
Li, Y.8
Poidevin, M.9
Wu, H.10
-
48
-
-
84874771985
-
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives
-
Spruijt, C.G., Gnerlich, F., Smits, A.H., Pfaffeneder, T., Jansen, P.W., Bauer, C., Münzel, M., Wagner, M., Müller, M., Khan, F., et al. Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives. Cell 152 (2013), 1146–1159.
-
(2013)
Cell
, vol.152
, pp. 1146-1159
-
-
Spruijt, C.G.1
Gnerlich, F.2
Smits, A.H.3
Pfaffeneder, T.4
Jansen, P.W.5
Bauer, C.6
Münzel, M.7
Wagner, M.8
Müller, M.9
Khan, F.10
-
49
-
-
84923952609
-
A sensitive approach to map genome-wide 5-hydroxymethylcytosine and 5-formylcytosine at single-base resolution
-
Sun, Z., Dai, N., Borgaro, J.G., Quimby, A., Sun, D., Corrêa, I.R. Jr., Zheng, Y., Zhu, Z., Guan, S., A sensitive approach to map genome-wide 5-hydroxymethylcytosine and 5-formylcytosine at single-base resolution. Mol. Cell 57 (2015), 750–761.
-
(2015)
Mol. Cell
, vol.57
, pp. 750-761
-
-
Sun, Z.1
Dai, N.2
Borgaro, J.G.3
Quimby, A.4
Sun, D.5
Corrêa, I.R.6
Zheng, Y.7
Zhu, Z.8
Guan, S.9
-
50
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani, M., Koh, K.P., Shen, Y., Pastor, W.A., Bandukwala, H., Brudno, Y., Agarwal, S., Iyer, L.M., Liu, D.R., Aravind, L., Rao, A., Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324 (2009), 930–935.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
Rao, A.11
-
51
-
-
84900300766
-
Programming and inheritance of parental DNA methylomes in mammals
-
Wang, L., Zhang, J., Duan, J., Gao, X., Zhu, W., Lu, X., Yang, L., Zhang, J., Li, G., Ci, W., et al. Programming and inheritance of parental DNA methylomes in mammals. Cell 157 (2014), 979–991.
-
(2014)
Cell
, vol.157
, pp. 979-991
-
-
Wang, L.1
Zhang, J.2
Duan, J.3
Gao, X.4
Zhu, W.5
Lu, X.6
Yang, L.7
Zhang, J.8
Li, G.9
Ci, W.10
-
52
-
-
84923999745
-
Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing
-
Wu, H., Wu, X., Shen, L., Zhang, Y., Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing. Nat. Biotechnol. 32 (2014), 1231–1240.
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 1231-1240
-
-
Wu, H.1
Wu, X.2
Shen, L.3
Zhang, Y.4
-
53
-
-
85003945031
-
The landscape of accessible chromatin in mammalian preimplantation embryos
-
Wu, J., Huang, B., Chen, H., Yin, Q., Liu, Y., Xiang, Y., Zhang, B., Liu, B., Wang, Q., Xia, W., et al. The landscape of accessible chromatin in mammalian preimplantation embryos. Nature 534 (2016), 652–657.
-
(2016)
Nature
, vol.534
, pp. 652-657
-
-
Wu, J.1
Huang, B.2
Chen, H.3
Yin, Q.4
Liu, Y.5
Xiang, Y.6
Zhang, B.7
Liu, B.8
Wang, Q.9
Xia, W.10
-
54
-
-
84946478306
-
Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale
-
Xia, B., Han, D., Lu, X., Sun, Z., Zhou, A., Yin, Q., Zeng, H., Liu, M., Jiang, X., Xie, W., et al. Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale. Nat. Methods 12 (2015), 1047–1050.
-
(2015)
Nat. Methods
, vol.12
, pp. 1047-1050
-
-
Xia, B.1
Han, D.2
Lu, X.3
Sun, Z.4
Zhou, A.5
Yin, Q.6
Zeng, H.7
Liu, M.8
Jiang, X.9
Xie, W.10
-
55
-
-
84883134780
-
Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
-
Xue, Z., Huang, K., Cai, C., Cai, L., Jiang, C.Y., Feng, Y., Liu, Z., Zeng, Q., Cheng, L., Sun, Y.E., et al. Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing. Nature 500 (2013), 593–597.
-
(2013)
Nature
, vol.500
, pp. 593-597
-
-
Xue, Z.1
Huang, K.2
Cai, C.3
Cai, L.4
Jiang, C.Y.5
Feng, Y.6
Liu, Z.7
Zeng, Q.8
Cheng, L.9
Sun, Y.E.10
-
56
-
-
44349170450
-
The ground state of embryonic stem cell self-renewal
-
Ying, Q.L., Wray, J., Nichols, J., Batlle-Morera, L., Doble, B., Woodgett, J., Cohen, P., Smith, A., The ground state of embryonic stem cell self-renewal. Nature 453 (2008), 519–523.
-
(2008)
Nature
, vol.453
, pp. 519-523
-
-
Ying, Q.L.1
Wray, J.2
Nichols, J.3
Batlle-Morera, L.4
Doble, B.5
Woodgett, J.6
Cohen, P.7
Smith, A.8
-
57
-
-
84861990517
-
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome
-
Yu, M., Hon, G.C., Szulwach, K.E., Song, C.X., Zhang, L., Kim, A., Li, X., Dai, Q., Shen, Y., Park, B., et al. Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome. Cell 149 (2012), 1368–1380.
-
(2012)
Cell
, vol.149
, pp. 1368-1380
-
-
Yu, M.1
Hon, G.C.2
Szulwach, K.E.3
Song, C.X.4
Zhang, L.5
Kim, A.6
Li, X.7
Dai, Q.8
Shen, Y.9
Park, B.10
-
58
-
-
84871461434
-
Genome-wide detection of single-nucleotide and copy-number variations of a single human cell
-
Zong, C., Lu, S., Chapman, A.R., Xie, X.S., Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. Science 338 (2012), 1622–1626.
-
(2012)
Science
, vol.338
, pp. 1622-1626
-
-
Zong, C.1
Lu, S.2
Chapman, A.R.3
Xie, X.S.4
|