-
1
-
-
0037083376
-
Capturing chromosome conformation
-
Dekker, J., Rippe, K., Dekker, M. & Kleckner, N. Capturing chromosome conformation. Science 295, 1306-1311 (2002).
-
(2002)
Science
, vol.295
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
2
-
-
33749400168
-
Chromosome ConformationCaptureCarbonCopy (5C): Amassively parallel solution for mapping interactions between genomic elements
-
Dostie, J. et al.Chromosome ConformationCaptureCarbonCopy (5C): amassively parallel solution for mapping interactions between genomic elements. Genome Res. 16, 1299-1309 (2006).
-
(2006)
Genome Res.
, vol.16
, pp. 1299-1309
-
-
Dostie, J.1
-
3
-
-
70349873824
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
-
Lieberman-Aiden, E. et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326, 289-293 (2009).
-
(2009)
Science
, vol.326
, pp. 289-293
-
-
Lieberman-Aiden, E.1
-
4
-
-
73349090560
-
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
-
Schoenfelder, S. et al. Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nature Genet. 42, 53-61 (2010).
-
(2010)
Nature Genet.
, vol.42
, pp. 53-61
-
-
Schoenfelder, S.1
-
5
-
-
33750212321
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
-
Simonis, M. et al. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nature Genet. 38, 1348-1354 (2006).
-
(2006)
Nature Genet.
, vol.38
, pp. 1348-1354
-
-
Simonis, M.1
-
6
-
-
33750203582
-
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra-and interchromosomal interactions
-
Zhao, Z. et al. Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra-and interchromosomal interactions. Nature Genet. 38, 1341-1347 (2006).
-
(2006)
Nature Genet.
, vol.38
, pp. 1341-1347
-
-
Zhao, Z.1
-
7
-
-
77952744854
-
A three-dimensional model of the yeast genome
-
Duan, Z. et al. A three-dimensional model of the yeast genome. Nature 465, 363-367 (2010).
-
(2010)
Nature
, vol.465
, pp. 363-367
-
-
Duan, Z.1
-
8
-
-
84862917808
-
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
-
Kalhor, R., Tjong, H., Jayathilaka, N., Alber, F. & Chen, L. Genome architectures revealed by tethered chromosome conformation capture and population-based modeling. Nature Biotechnol. 30, 90-98 (2012).
-
(2012)
Nature Biotechnol.
, vol.30
, pp. 90-98
-
-
Kalhor, R.1
Tjong, H.2
Jayathilaka, N.3
Alber, F.4
Chen, L.5
-
9
-
-
79960948298
-
Bridging the resolution gap in structural modeling of 3D genome organization
-
Marti-Renom, M. A. & Mirny, L. A. Bridging the resolution gap in structural modeling of 3D genome organization. PLOS Comput. Biol. 7, e1002125 (2011).
-
(2011)
PLOS Comput. Biol.
, vol.7
-
-
Marti-Renom, M.A.1
Mirny, L.A.2
-
10
-
-
78650458168
-
Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation
-
Tanizawa, H. et al.Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation. Nucleic Acids Res. 38, 8164-8177 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 8164-8177
-
-
Tanizawa, H.1
-
11
-
-
84867003195
-
Robust4C-seq data analysis to screen for regulatoryDNA interactions
-
van deWerken, H. J. et al.Robust4C-seq data analysis to screen for regulatoryDNA interactions. Nature Methods 9, 969-972 (2012).
-
(2012)
Nature Methods
, vol.9
, pp. 969-972
-
-
Van Dewerken, H.J.1
-
12
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
Osborne, C. S. et al. Active genes dynamically colocalize to shared sites of ongoing transcription. Nature Genet. 36, 1065-1071 (2004).
-
(2004)
Nature Genet.
, vol.36
, pp. 1065-1071
-
-
Osborne, C.S.1
-
13
-
-
84855219582
-
A view of the chromatin landscape
-
Rapkin, L. M., Anchel, D. R., Li, R. & Bazett-Jones, D. P. A view of the chromatin landscape. Micron 43, 150-158 (2012).
-
(2012)
Micron
, vol.43
, pp. 150-158
-
-
Rapkin, L.M.1
Anchel, D.R.2
Li, R.3
Bazett-Jones, D.P.4
-
14
-
-
34249307315
-
Nuclear organization of the genomeand the potential for gene regulation
-
Fraser, P.&Bickmore, W.Nuclear organization of the genomeand the potential for gene regulation. Nature 447, 413-417 (2007).
-
(2007)
Nature
, vol.447
, pp. 413-417
-
-
Fraser, P.1
Bickmore, W.2
-
15
-
-
33846283384
-
Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions
-
Lancto t, C., Cheutin, T., Cremer, M., Cavalli, G. & Cremer, T. Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. Nature Rev. Genet. 8, 104-115 (2007).
-
(2007)
Nature Rev. Genet.
, vol.8
, pp. 104-115
-
-
Lancto, T.C.1
Cheutin, T.2
Cremer, M.3
Cavalli, G.4
Cremer, T.5
-
16
-
-
34548210885
-
Myc dynamically and preferentially relocates to a transcription factory occupied by Igh
-
Osborne, C. S. et al. Myc dynamically and preferentially relocates to a transcription factory occupied by Igh. PLoS Biol. 5, e192 (2007).
-
(2007)
PLoS Biol.
, vol.5
-
-
Osborne, C.S.1
-
17
-
-
80054984337
-
Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
-
Yaffe, E. & Tanay, A. Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nature Genet. 43, 1059-1065 (2011).
-
(2011)
Nature Genet.
, vol.43
, pp. 1059-1065
-
-
Yaffe, E.1
Tanay, A.2
-
18
-
-
84856747483
-
Three-dimensional folding and functional organization principles of the Drosophila genome
-
Sexton, T. et al. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 148, 458-472 (2012).
-
(2012)
Cell
, vol.148
, pp. 458-472
-
-
Sexton, T.1
-
19
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
Dixon, J. R. et al. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485, 376-380 (2012).
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
-
20
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
Nora, E. P. et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 485, 381-385 (2012).
-
(2012)
Nature
, vol.485
, pp. 381-385
-
-
Nora, E.P.1
-
21
-
-
84876838711
-
The hierarchy of the 3D genome
-
Gibcus, J. H. & Dekker, J. The hierarchy of the 3D genome. Mol. Cell 49, 773-782 (2013).
-
(2013)
Mol. Cell
, vol.49
, pp. 773-782
-
-
Gibcus, J.H.1
Dekker, J.2
-
22
-
-
41949121201
-
The3Dstructure of the immunoglobulin heavy-chain locus: Implications for long-range genomic interactions
-
Jhunjhunwala, S. et al. The3Dstructure of the immunoglobulin heavy-chain locus: implications for long-range genomic interactions. Cell 133, 265-279 (2008).
-
(2008)
Cell
, vol.133
, pp. 265-279
-
-
Jhunjhunwala, S.1
-
23
-
-
77955393744
-
Stablemorphology, but dynamic internal reorganisation, of interphase human chromosomes in living cells
-
Müller, I., Boyle, S., Singer, R. H., Bickmore, W. A. & Chubb, J. R. Stablemorphology, but dynamic internal reorganisation, of interphase human chromosomes in living cells. PLoS ONE 5, e11560 (2010).
-
(2010)
PLoS ONE
, vol.5
-
-
Müller, I.1
Boyle, S.2
Singer, R.H.3
Bickmore, W.A.4
Chubb, J.R.5
-
24
-
-
34250159068
-
The ins and outs of gene regulation and chromosome territory organisation
-
Heard, E. & Bickmore, W. The ins and outs of gene regulation and chromosome territory organisation. Curr. Opin. Cell Biol. 19, 311-316 (2007).
-
(2007)
Curr. Opin. Cell Biol.
, vol.19
, pp. 311-316
-
-
Heard, E.1
Bickmore, W.2
-
25
-
-
79959872458
-
Cell type-specific DNA methylation at intragenic CpG islands in the immune system
-
Deaton, A. M. et al. Cell type-specific DNA methylation at intragenic CpG islands in the immune system. Genome Res. 21, 1074-1086 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 1074-1086
-
-
Deaton, A.M.1
-
26
-
-
77952576224
-
Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation
-
Peric-Hupkes, D. et al. Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation. Mol. Cell 38, 603-613 (2010).
-
(2010)
Mol. Cell
, vol.38
, pp. 603-613
-
-
Peric-Hupkes, D.1
-
27
-
-
0035316574
-
Chromosome territories, nuclear architecture and gene regulation in mammalian cells
-
Cremer, T. & Cremer, C. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nature Rev. Genet. 2, 292-301 (2001).
-
(2001)
Nature Rev. Genet.
, vol.2
, pp. 292-301
-
-
Cremer, T.1
Cremer, C.2
-
28
-
-
33847077659
-
Beyond the sequence: Cellular organization of genome function
-
Misteli, T. Beyond the sequence: cellular organization of genome function. Cell 128, 787-800 (2007).
-
(2007)
Cell
, vol.128
, pp. 787-800
-
-
Misteli, T.1
-
29
-
-
33646729244
-
Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
-
Branco, M. R. & Pombo, A. Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol. 4, e138 (2006).
-
(2006)
PLoS Biol.
, vol.4
-
-
Branco, M.R.1
Pombo, A.2
-
30
-
-
33646021963
-
Long-range directional movement of an interphase chromosome site
-
Chuang, C. H. et al. Long-range directional movement of an interphase chromosome site. Curr. Biol. 16, 825-831 (2006).
-
(2006)
Curr. Biol.
, vol.16
, pp. 825-831
-
-
Chuang, C.H.1
-
31
-
-
0036006293
-
Chromatinmotion is constrained by association with nuclear compartments in human cells
-
Chubb, J. R., Boyle, S., Perry, P.& Bickmore, W. A. Chromatinmotion is constrained by association with nuclear compartments in human cells. Curr. Biol. 12, 439-445 (2002).
-
(2002)
Curr. Biol.
, vol.12
, pp. 439-445
-
-
Chubb, J.R.1
Boyle, S.2
Perry, P.3
Bickmore, W.A.4
-
32
-
-
37249038708
-
Actin-dependent intranuclear repositioning of an active gene locus in vivo
-
Dundr, M. et al. Actin-dependent intranuclear repositioning of an active gene locus in vivo. J. Cell Biol. 179, 1095-1103 (2007).
-
(2007)
J. Cell Biol.
, vol.179
, pp. 1095-1103
-
-
Dundr, M.1
|