-
1
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
-
10.1038/nature09303, 3491567, 20639862
-
Ito S, D'Alessio AC, Taranova OV, Hong K, Sowers LC, Zhang Y. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 2010, 466:1129-1133. 10.1038/nature09303, 3491567, 20639862.
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
2
-
-
66149123748
-
The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
-
10.1126/science.1169786, 3263819, 19372393
-
Kriaucionis S, Heintz N. The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 2009, 324:929-930. 10.1126/science.1169786, 3263819, 19372393.
-
(2009)
Science
, vol.324
, pp. 929-930
-
-
Kriaucionis, S.1
Heintz, N.2
-
3
-
-
78049401678
-
Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA
-
10.1093/nar/gkq684, 2965258, 20685817
-
Szwagierczak A, Bultmann S, Schmidt CS, Spada F, Leonhardt H. Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA. Nucleic Acids Res 2010, 38:e181. 10.1093/nar/gkq684, 2965258, 20685817.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Szwagierczak, A.1
Bultmann, S.2
Schmidt, C.S.3
Spada, F.4
Leonhardt, H.5
-
4
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
10.1126/science.1170116, 2715015, 19372391
-
Tahiliani M, Koh KP, Shen Y, Pastor WA, Bandukwala H, Brudno Y, Agarwal S, Iyer LM, Liu DR, Aravind L, Rao A. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 2009, 324:930-935. 10.1126/science.1170116, 2715015, 19372391.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
Rao, A.11
-
5
-
-
84867230056
-
5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary
-
Khare T, Pai S, Koncevicius K, Pal M, Kriukiene E, Liutkeviciute Z, Irimia M, Jia PX, Ptak C, Xia MH, Tice R, Tochigi M, Morera S, Nazarians A, Belsham D, Wong AHC, Blencowe BJ, Wang SC, Kapranov P, Kustra R, Labrie V, Klimasauskas S, Petronis A. 5-hmC in the brain is abundant in synaptic genes and shows differences at the exon-intron boundary. Nat Struct Mole Biol 2012, 19:1037-U1094.
-
(2012)
Nat Struct Mole Biol
, vol.19
-
-
Khare, T.1
Pai, S.2
Koncevicius, K.3
Pal, M.4
Kriukiene, E.5
Liutkeviciute, Z.6
Irimia, M.7
Jia, P.X.8
Ptak, C.9
Xia, M.H.10
Tice, R.11
Tochigi, M.12
Morera, S.13
Nazarians, A.14
Belsham, D.15
Wong, A.H.C.16
Blencowe, B.J.17
Wang, S.C.18
Kapranov, P.19
Kustra, R.20
Labrie, V.21
Klimasauskas, S.22
Petronis, A.23
more..
-
6
-
-
83855163995
-
Uncovering the role of 5-hydroxymethylcytosine in the epigenome
-
Branco MR, Ficz G, Reik W. Uncovering the role of 5-hydroxymethylcytosine in the epigenome. Nat Rev Genet 2012, 13:7-13.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 7-13
-
-
Branco, M.R.1
Ficz, G.2
Reik, W.3
-
7
-
-
73349104113
-
Active DNA demethylation mediated by DNA glycosylases
-
10.1146/annurev-genet-102108-134205, 3137514, 19659441
-
Zhu JK. Active DNA demethylation mediated by DNA glycosylases. Annu Rev Genet 2009, 43:143-166. 10.1146/annurev-genet-102108-134205, 3137514, 19659441.
-
(2009)
Annu Rev Genet
, vol.43
, pp. 143-166
-
-
Zhu, J.K.1
-
8
-
-
77956095231
-
Active DNA demethylation: many roads lead to Rome
-
10.1038/nrm2950, 3711520, 20683471
-
Wu SC, Zhang Y. Active DNA demethylation: many roads lead to Rome. Nat Rev Mol Cell Biol 2010, 11:607-620. 10.1038/nrm2950, 3711520, 20683471.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 607-620
-
-
Wu, S.C.1
Zhang, Y.2
-
9
-
-
79960249232
-
Genomic mapping of 5-hydroxymethylcytosine in the human brain
-
10.1093/nar/gkr120, 3130285, 21378125
-
Jin SG, Wu X, Li AX, Pfeifer GP. Genomic mapping of 5-hydroxymethylcytosine in the human brain. Nucleic Acids Res 2011, 39:5015-5024. 10.1093/nar/gkr120, 3130285, 21378125.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 5015-5024
-
-
Jin, S.G.1
Wu, X.2
Li, A.X.3
Pfeifer, G.P.4
-
10
-
-
82255192294
-
5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging
-
10.1038/nn.2959, 3292193, 22037496
-
Szulwach KE, Li X, Li Y, Song CX, Wu H, Dai Q, Irier H, Upadhyay AK, Gearing M, Levey AI, Vasanthakumar A, Godley LA, Chang Q, Cheng X, He C, Jin P. 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging. Nat Neurosci 2011, 14:1607-1616. 10.1038/nn.2959, 3292193, 22037496.
-
(2011)
Nat Neurosci
, vol.14
, pp. 1607-1616
-
-
Szulwach, K.E.1
Li, X.2
Li, Y.3
Song, C.X.4
Wu, H.5
Dai, Q.6
Irier, H.7
Upadhyay, A.K.8
Gearing, M.9
Levey, A.I.10
Vasanthakumar, A.11
Godley, L.A.12
Chang, Q.13
Cheng, X.14
He, C.15
Jin, P.16
-
11
-
-
84874771985
-
Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives
-
10.1016/j.cell.2013.02.004, 23434322
-
Spruijt CG, Gnerlich F, Smits AH, Pfaffeneder T, Jansen PW, Bauer C, Munzel M, Wagner M, Muller M, Khan F, Eberl HC, Mensinga A, Brinkman AB, Lephikov K, Muller U, Walter J, Boelens R, van Ingen H, Leonhardt H, Carell T, Vermeulen M. Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives. Cell 2013, 152:1146-1159. 10.1016/j.cell.2013.02.004, 23434322.
-
(2013)
Cell
, vol.152
, pp. 1146-1159
-
-
Spruijt, C.G.1
Gnerlich, F.2
Smits, A.H.3
Pfaffeneder, T.4
Jansen, P.W.5
Bauer, C.6
Munzel, M.7
Wagner, M.8
Muller, M.9
Khan, F.10
Eberl, H.C.11
Mensinga, A.12
Brinkman, A.B.13
Lephikov, K.14
Muller, U.15
Walter, J.16
Boelens, R.17
van Ingen, H.18
Leonhardt, H.19
Carell, T.20
Vermeulen, M.21
more..
-
12
-
-
84860371870
-
Combinatorial complexity in chromatin structure and function: revisiting the histone code
-
10.1016/j.gde.2012.02.013, 3345062, 22440480
-
Rando OJ. Combinatorial complexity in chromatin structure and function: revisiting the histone code. Curr Opin Genet Dev 2012, 22:148-155. 10.1016/j.gde.2012.02.013, 3345062, 22440480.
-
(2012)
Curr Opin Genet Dev
, vol.22
, pp. 148-155
-
-
Rando, O.J.1
-
13
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
10.1038/nrg2719, 3034103, 20142834
-
Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 2010, 11:204-220. 10.1038/nrg2719, 3034103, 20142834.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
14
-
-
79956330964
-
CpG islands and the regulation of transcription
-
10.1101/gad.2037511, 3093116, 21576262
-
Deaton AM, Bird A. CpG islands and the regulation of transcription. Genes Dev 2011, 25:1010-1022. 10.1101/gad.2037511, 3093116, 21576262.
-
(2011)
Genes Dev
, vol.25
, pp. 1010-1022
-
-
Deaton, A.M.1
Bird, A.2
-
15
-
-
84455167621
-
Mbd3/NURD complex regulates expression of 5-Hydroxymethylcytosine marked genes in embryonic stem cells
-
10.1016/j.cell.2011.11.054, 3252821, 22196727
-
Yildirim O, Li R, Hung JH, Chen PB, Dong X, Ee LS, Weng Z, Rando OJ, Fazzio TG. Mbd3/NURD complex regulates expression of 5-Hydroxymethylcytosine marked genes in embryonic stem cells. Cell 2011, 147:1498-1510. 10.1016/j.cell.2011.11.054, 3252821, 22196727.
-
(2011)
Cell
, vol.147
, pp. 1498-1510
-
-
Yildirim, O.1
Li, R.2
Hung, J.H.3
Chen, P.B.4
Dong, X.5
Ee, L.S.6
Weng, Z.7
Rando, O.J.8
Fazzio, T.G.9
-
16
-
-
84871563384
-
MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system
-
10.1016/j.cell.2012.11.022, 3653293, 23260135
-
Mellen M, Ayata P, Dewell S, Kriaucionis S, Heintz N. MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system. Cell 2012, 151:1417-1430. 10.1016/j.cell.2012.11.022, 3653293, 23260135.
-
(2012)
Cell
, vol.151
, pp. 1417-1430
-
-
Mellen, M.1
Ayata, P.2
Dewell, S.3
Kriaucionis, S.4
Heintz, N.5
-
17
-
-
0024342686
-
Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs
-
10.1016/0092-8674(89)90430-3, 2758464
-
Meehan RR, Lewis JD, McKay S, Kleiner EL, Bird AP. Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs. Cell 1989, 58:499-507. 10.1016/0092-8674(89)90430-3, 2758464.
-
(1989)
Cell
, vol.58
, pp. 499-507
-
-
Meehan, R.R.1
Lewis, J.D.2
McKay, S.3
Kleiner, E.L.4
Bird, A.P.5
-
18
-
-
79956323623
-
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
-
10.1038/nature10008, 21460836
-
Ficz G, Branco MR, Seisenberger S, Santos F, Krueger F, Hore TA, Marques CJ, Andrews S, Reik W. Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation. Nature 2011, 473:398-402. 10.1038/nature10008, 21460836.
-
(2011)
Nature
, vol.473
, pp. 398-402
-
-
Ficz, G.1
Branco, M.R.2
Seisenberger, S.3
Santos, F.4
Krueger, F.5
Hore, T.A.6
Marques, C.J.7
Andrews, S.8
Reik, W.9
-
19
-
-
79959431845
-
Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain
-
10.1371/journal.pone.0021306, 3120858, 21731699
-
Frauer C, Hoffmann T, Bultmann S, Casa V, Cardoso MC, Antes I, Leonhardt H. Recognition of 5-hydroxymethylcytosine by the Uhrf1 SRA domain. PLoS One 2011, 6:e21306. 10.1371/journal.pone.0021306, 3120858, 21731699.
-
(2011)
PLoS One
, vol.6
-
-
Frauer, C.1
Hoffmann, T.2
Bultmann, S.3
Casa, V.4
Cardoso, M.C.5
Antes, I.6
Leonhardt, H.7
-
20
-
-
80053443628
-
A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein
-
10.1371/journal.pone.0025884, 3185043, 21991380
-
Bartels SJ, Spruijt CG, Brinkman AB, Jansen PW, Vermeulen M, Stunnenberg HG. A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein. PLoS One 2011, 6:e25884. 10.1371/journal.pone.0025884, 3185043, 21991380.
-
(2011)
PLoS One
, vol.6
-
-
Bartels, S.J.1
Spruijt, C.G.2
Brinkman, A.B.3
Jansen, P.W.4
Vermeulen, M.5
Stunnenberg, H.G.6
-
21
-
-
0031792779
-
Identification and characterization of a family of mammalian methyl-CpG binding proteins
-
109239, 9774669
-
Hendrich B, Bird A. Identification and characterization of a family of mammalian methyl-CpG binding proteins. Mol Cell Biol 1998, 18:6538-6547. 109239, 9774669.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 6538-6547
-
-
Hendrich, B.1
Bird, A.2
-
22
-
-
84867387161
-
Esrrb is a pivotal target of the Gsk3/Tcf3 axis regulating embryonic stem cell self-renewal
-
10.1016/j.stem.2012.06.008, 3465555, 23040478
-
Martello G, Sugimoto T, Diamanti E, Joshi A, Hannah R, Ohtsuka S, Gottgens B, Niwa H, Smith A. Esrrb is a pivotal target of the Gsk3/Tcf3 axis regulating embryonic stem cell self-renewal. Cell Stem Cell 2012, 11:491-504. 10.1016/j.stem.2012.06.008, 3465555, 23040478.
-
(2012)
Cell Stem Cell
, vol.11
, pp. 491-504
-
-
Martello, G.1
Sugimoto, T.2
Diamanti, E.3
Joshi, A.4
Hannah, R.5
Ohtsuka, S.6
Gottgens, B.7
Niwa, H.8
Smith, A.9
-
23
-
-
84866887356
-
Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation
-
10.1093/nar/gks628, 3458566, 22740654
-
Hashimoto H, Zhang X, Cheng X. Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation. Nucleic Acids Res 2012, 40:8276-8284. 10.1093/nar/gks628, 3458566, 22740654.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 8276-8284
-
-
Hashimoto, H.1
Zhang, X.2
Cheng, X.3
-
24
-
-
78049419464
-
Orphan CpG islands identify numerous conserved promoters in the mammalian genome
-
10.1371/journal.pgen.1001134, 2944787, 20885785
-
Illingworth RS, Gruenewald-Schneider U, Webb S, Kerr AR, James KD, Turner DJ, Smith C, Harrison DJ, Andrews R, Bird AP. Orphan CpG islands identify numerous conserved promoters in the mammalian genome. PLoS Genet 2010, 6:e1001134. 10.1371/journal.pgen.1001134, 2944787, 20885785.
-
(2010)
PLoS Genet
, vol.6
-
-
Illingworth, R.S.1
Gruenewald-Schneider, U.2
Webb, S.3
Kerr, A.R.4
James, K.D.5
Turner, D.J.6
Smith, C.7
Harrison, D.J.8
Andrews, R.9
Bird, A.P.10
-
25
-
-
84865061978
-
Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase
-
10.1186/gb-2012-13-8-r69, 3491369, 22902005
-
Raiber EA, Beraldi D, Ficz G, Burgess HE, Branco MR, Murat P, Oxley D, Booth MJ, Reik W, Balasubramanian S. Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase. Genome Biol 2012, 13:R69. 10.1186/gb-2012-13-8-r69, 3491369, 22902005.
-
(2012)
Genome Biol
, vol.13
-
-
Raiber, E.A.1
Beraldi, D.2
Ficz, G.3
Burgess, H.E.4
Branco, M.R.5
Murat, P.6
Oxley, D.7
Booth, M.J.8
Reik, W.9
Balasubramanian, S.10
-
26
-
-
84876907152
-
Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming
-
10.1016/j.cell.2013.04.001, 23602153
-
Song CX, Szulwach KE, Dai Q, Fu Y, Mao SQ, Lin L, Street C, Li Y, Poidevin M, Wu H, Gao J, Liu P, Li L, Xu GL, Jin P, He C. Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming. Cell 2013, 153:678-691. 10.1016/j.cell.2013.04.001, 23602153.
-
(2013)
Cell
, vol.153
, pp. 678-691
-
-
Song, C.X.1
Szulwach, K.E.2
Dai, Q.3
Fu, Y.4
Mao, S.Q.5
Lin, L.6
Street, C.7
Li, Y.8
Poidevin, M.9
Wu, H.10
Gao, J.11
Liu, P.12
Li, L.13
Xu, G.L.14
Jin, P.15
He, C.16
-
27
-
-
84876946045
-
Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics
-
10.1016/j.cell.2013.04.002, 3687516, 23602152
-
Shen L, Wu H, Diep D, Yamaguchi S, D'Alessio AC, Fung HL, Zhang K, Zhang Y. Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics. Cell 2013, 153:692-706. 10.1016/j.cell.2013.04.002, 3687516, 23602152.
-
(2013)
Cell
, vol.153
, pp. 692-706
-
-
Shen, L.1
Wu, H.2
Diep, D.3
Yamaguchi, S.4
D'Alessio, A.C.5
Fung, H.L.6
Zhang, K.7
Zhang, Y.8
-
28
-
-
84884164554
-
FGF Signaling Inhibition in ESCs Drives Rapid Genome-wide Demethylation to the Epigenetic Ground State of Pluripotency
-
10.1016/j.stem.2013.06.004, 3765959, 23850245
-
Ficz G, Hore TA, Santos F, Lee HJ, Dean W, Arand J, Krueger F, Oxley D, Paul YL, Walter J, Cook SJ, Andrews S, Branco MR, Reik W. FGF Signaling Inhibition in ESCs Drives Rapid Genome-wide Demethylation to the Epigenetic Ground State of Pluripotency. Cell Stem Cell 2013, 13:351-359. 10.1016/j.stem.2013.06.004, 3765959, 23850245.
-
(2013)
Cell Stem Cell
, vol.13
, pp. 351-359
-
-
Ficz, G.1
Hore, T.A.2
Santos, F.3
Lee, H.J.4
Dean, W.5
Arand, J.6
Krueger, F.7
Oxley, D.8
Paul, Y.L.9
Walter, J.10
Cook, S.J.11
Andrews, S.12
Branco, M.R.13
Reik, W.14
-
29
-
-
80053917872
-
Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites
-
10.1074/jbc.C111.284620, 3195571, 21862836
-
Maiti A, Drohat AC. Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites. J Biol Chem 2011, 286:35334-35338. 10.1074/jbc.C111.284620, 3195571, 21862836.
-
(2011)
J Biol Chem
, vol.286
, pp. 35334-35338
-
-
Maiti, A.1
Drohat, A.C.2
-
30
-
-
84869044795
-
Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation
-
10.1093/nar/gks845, 3488261, 22962365
-
Hashimoto H, Hong S, Bhagwat AS, Zhang X, Cheng X. Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation. Nucleic Acids Res 2012, 40:10203-10214. 10.1093/nar/gks845, 3488261, 22962365.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 10203-10214
-
-
Hashimoto, H.1
Hong, S.2
Bhagwat, A.S.3
Zhang, X.4
Cheng, X.5
-
31
-
-
79551635700
-
Different binding properties and function of CXXC zinc finger domains in Dnmt1 and Tet1
-
10.1371/journal.pone.0016627, 3032784, 21311766
-
Frauer C, Rottach A, Meilinger D, Bultmann S, Fellinger K, Hasenoder S, Wang M, Qin W, Soding J, Spada F, Leonhardt H. Different binding properties and function of CXXC zinc finger domains in Dnmt1 and Tet1. PLoS One 2011, 6:e16627. 10.1371/journal.pone.0016627, 3032784, 21311766.
-
(2011)
PLoS One
, vol.6
-
-
Frauer, C.1
Rottach, A.2
Meilinger, D.3
Bultmann, S.4
Fellinger, K.5
Hasenoder, S.6
Wang, M.7
Qin, W.8
Soding, J.9
Spada, F.10
Leonhardt, H.11
-
32
-
-
78649825211
-
TET1 is a DNA-binding protein that modulates DNA methylation and gene transcription via hydroxylation of 5-methylcytosine
-
10.1038/cr.2010.156, 21079648
-
Zhang H, Zhang X, Clark E, Mulcahey M, Huang S, Shi YG. TET1 is a DNA-binding protein that modulates DNA methylation and gene transcription via hydroxylation of 5-methylcytosine. Cell Res 2010, 20:1390-1393. 10.1038/cr.2010.156, 21079648.
-
(2010)
Cell Res
, vol.20
, pp. 1390-1393
-
-
Zhang, H.1
Zhang, X.2
Clark, E.3
Mulcahey, M.4
Huang, S.5
Shi, Y.G.6
-
33
-
-
79955948324
-
Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells
-
10.1016/j.molcel.2011.04.005, 3099128, 21514197
-
Xu Y, Wu F, Tan L, Kong L, Xiong L, Deng J, Barbera AJ, Zheng L, Zhang H, Huang S, Min J, Nicholson T, Chen T, Xu G, Shi Y, Zhang K, Shi YG. Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells. Mol Cell 2011, 42:451-464. 10.1016/j.molcel.2011.04.005, 3099128, 21514197.
-
(2011)
Mol Cell
, vol.42
, pp. 451-464
-
-
Xu, Y.1
Wu, F.2
Tan, L.3
Kong, L.4
Xiong, L.5
Deng, J.6
Barbera, A.J.7
Zheng, L.8
Zhang, H.9
Huang, S.10
Min, J.11
Nicholson, T.12
Chen, T.13
Xu, G.14
Shi, Y.15
Zhang, K.16
Shi, Y.G.17
-
34
-
-
77953704837
-
FOXK2 transcription factor is a novel G/T-mismatch DNA binding protein
-
10.1093/jb/mvq004, 20097901
-
Fujii Y, Nakamura M. FOXK2 transcription factor is a novel G/T-mismatch DNA binding protein. J Biochem 2010, 147:705-709. 10.1093/jb/mvq004, 20097901.
-
(2010)
J Biochem
, vol.147
, pp. 705-709
-
-
Fujii, Y.1
Nakamura, M.2
-
35
-
-
80052223272
-
An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming
-
10.1016/j.cell.2011.08.023, 21924763
-
Gabut M, Samavarchi-Tehrani P, Wang X, Slobodeniuc V, O'Hanlon D, Sung HK, Alvarez M, Talukder S, Pan Q, Mazzoni EO, Nedelec S, Wichterle H, Woltjen K, Hughes TR, Zandstra PW, Nagy A, Wrana JL, Blencowe BJ. An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming. Cell 2011, 147:132-146. 10.1016/j.cell.2011.08.023, 21924763.
-
(2011)
Cell
, vol.147
, pp. 132-146
-
-
Gabut, M.1
Samavarchi-Tehrani, P.2
Wang, X.3
Slobodeniuc, V.4
O'Hanlon, D.5
Sung, H.K.6
Alvarez, M.7
Talukder, S.8
Pan, Q.9
Mazzoni, E.O.10
Nedelec, S.11
Wichterle, H.12
Woltjen, K.13
Hughes, T.R.14
Zandstra, P.W.15
Nagy, A.16
Wrana, J.L.17
Blencowe, B.J.18
-
36
-
-
77951228749
-
Foxp1/2/4-NuRD interactions regulate gene expression and epithelial injury response in the lung via regulation of interleukin-6
-
10.1074/jbc.M109.088468, 2857082, 20185820
-
Chokas AL, Trivedi CM, Lu MM, Tucker PW, Li S, Epstein JA, Morrisey EE. Foxp1/2/4-NuRD interactions regulate gene expression and epithelial injury response in the lung via regulation of interleukin-6. J Biol Chem 2010, 285:13304-13313. 10.1074/jbc.M109.088468, 2857082, 20185820.
-
(2010)
J Biol Chem
, vol.285
, pp. 13304-13313
-
-
Chokas, A.L.1
Trivedi, C.M.2
Lu, M.M.3
Tucker, P.W.4
Li, S.5
Epstein, J.A.6
Morrisey, E.E.7
-
37
-
-
84873543649
-
Foxk1 promotes cell proliferation and represses myogenic differentiation by regulating Foxo4 and Mef2
-
10.1242/jcs.105239, 22956541
-
Shi X, Wallis AM, Gerard RD, Voelker KA, Grange RW, DePinho RA, Garry MG, Garry DJ. Foxk1 promotes cell proliferation and represses myogenic differentiation by regulating Foxo4 and Mef2. J Cell Sci 2012, 125:5329-5337. 10.1242/jcs.105239, 22956541.
-
(2012)
J Cell Sci
, vol.125
, pp. 5329-5337
-
-
Shi, X.1
Wallis, A.M.2
Gerard, R.D.3
Voelker, K.A.4
Grange, R.W.5
DePinho, R.A.6
Garry, M.G.7
Garry, D.J.8
-
38
-
-
0026782520
-
Expression of a mouse zinc finger protein gene in both spermatocytes and oocytes during meiosis
-
10.1016/0012-1606(92)90120-6, 1397691
-
Noce T, Fujiwara Y, Sezaki M, Fujimoto H, Higashinakagawa T. Expression of a mouse zinc finger protein gene in both spermatocytes and oocytes during meiosis. Dev Biol 1992, 153:356-367. 10.1016/0012-1606(92)90120-6, 1397691.
-
(1992)
Dev Biol
, vol.153
, pp. 356-367
-
-
Noce, T.1
Fujiwara, Y.2
Sezaki, M.3
Fujimoto, H.4
Higashinakagawa, T.5
-
39
-
-
0027095553
-
The ubiquitous transactivator Zfp-38 is upregulated during spermatogenesis with differential transcription
-
10.1016/0925-4773(92)90040-Q, 1284028
-
Chowdhury K, Goulding M, Walther C, Imai K, Fickenscher H. The ubiquitous transactivator Zfp-38 is upregulated during spermatogenesis with differential transcription. Mech Dev 1992, 39:129-142. 10.1016/0925-4773(92)90040-Q, 1284028.
-
(1992)
Mech Dev
, vol.39
, pp. 129-142
-
-
Chowdhury, K.1
Goulding, M.2
Walther, C.3
Imai, K.4
Fickenscher, H.5
-
40
-
-
0242363151
-
Methylated DNA-binding domain 1 and methylpurine-DNA glycosylase link transcriptional repression and DNA repair in chromatin
-
10.1073/pnas.2131819100, 240709, 14555760
-
Watanabe S, Ichimura T, Fujita N, Tsuruzoe S, Ohki I, Shirakawa M, Kawasuji M, Nakao M. Methylated DNA-binding domain 1 and methylpurine-DNA glycosylase link transcriptional repression and DNA repair in chromatin. Proc Natl Acad Sci U S A 2003, 100:12859-12864. 10.1073/pnas.2131819100, 240709, 14555760.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 12859-12864
-
-
Watanabe, S.1
Ichimura, T.2
Fujita, N.3
Tsuruzoe, S.4
Ohki, I.5
Shirakawa, M.6
Kawasuji, M.7
Nakao, M.8
-
41
-
-
0037052539
-
A complex with chromatin modifiers that occupies E2F- and Myc-responsive genes in G0 cells
-
10.1126/science.1069861, 12004135
-
Ogawa H, Ishiguro K, Gaubatz S, Livingston DM, Nakatani Y. A complex with chromatin modifiers that occupies E2F- and Myc-responsive genes in G0 cells. Science 2002, 296:1132-1136. 10.1126/science.1069861, 12004135.
-
(2002)
Science
, vol.296
, pp. 1132-1136
-
-
Ogawa, H.1
Ishiguro, K.2
Gaubatz, S.3
Livingston, D.M.4
Nakatani, Y.5
-
42
-
-
79955972412
-
L3MBTL2 protein acts in concert with PcG protein-mediated monoubiquitination of H2A to establish a repressive chromatin structure
-
10.1016/j.molcel.2011.04.004, 3142354, 21596310
-
Trojer P, Cao AR, Gao Z, Li Y, Zhang J, Xu X, Li G, Losson R, Erdjument-Bromage H, Tempst P, Farnham PJ, Reinberg D. L3MBTL2 protein acts in concert with PcG protein-mediated monoubiquitination of H2A to establish a repressive chromatin structure. Mol Cell 2011, 42:438-450. 10.1016/j.molcel.2011.04.004, 3142354, 21596310.
-
(2011)
Mol Cell
, vol.42
, pp. 438-450
-
-
Trojer, P.1
Cao, A.R.2
Gao, Z.3
Li, Y.4
Zhang, J.5
Xu, X.6
Li, G.7
Losson, R.8
Erdjument-Bromage, H.9
Tempst, P.10
Farnham, P.J.11
Reinberg, D.12
-
43
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
10.1126/science.1210597, 3495246, 21778364
-
Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 2011, 333:1300-1303. 10.1126/science.1210597, 3495246, 21778364.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
44
-
-
33644788060
-
Peptide mass fingerprinting: protein identification using MALDI-TOF mass spectrometry
-
10.1007/978-1-59259-948-6_16, 16350956
-
Webster J, Oxley D. Peptide mass fingerprinting: protein identification using MALDI-TOF mass spectrometry. Methods Mol Biol 2005, 310:227-240. 10.1007/978-1-59259-948-6_16, 16350956.
-
(2005)
Methods Mol Biol
, vol.310
, pp. 227-240
-
-
Webster, J.1
Oxley, D.2
-
46
-
-
84874762979
-
The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013
-
10.1093/nar/gks1262, 3531176, 23203882
-
Vizcaino JA, Cote RG, Csordas A, Dianes JA, Fabregat A, Foster JM, Griss J, Alpi E, Birim M, Contell J, O'Kelly G, Schoenegger A, Ovelleiro D, Perez-Riverol Y, Reisinger F, Rios D, Wang R, Hermjakob H. The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013. Nucleic Acids Res 2013, 41:D1063-D1069. 10.1093/nar/gks1262, 3531176, 23203882.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Vizcaino, J.A.1
Cote, R.G.2
Csordas, A.3
Dianes, J.A.4
Fabregat, A.5
Foster, J.M.6
Griss, J.7
Alpi, E.8
Birim, M.9
Contell, J.10
O'Kelly, G.11
Schoenegger, A.12
Ovelleiro, D.13
Perez-Riverol, Y.14
Reisinger, F.15
Rios, D.16
Wang, R.17
Hermjakob, H.18
-
47
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
da Huang W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4:44-57.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
da Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
48
-
-
58549112996
-
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
-
10.1093/nar/gkn923, 2615629, 19033363
-
da Huang W, Sherman BT, Lempicki RA. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 2009, 37:1-13. 10.1093/nar/gkn923, 2615629, 19033363.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1-13
-
-
da Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
|