메뉴 건너뛰기




Volumn 62, Issue 5, 2017, Pages 1155-1164

Influences of the Gut Microbiota on DNA Methylation and Histone Modification

Author keywords

DNA methylation; Epigenetic modifications; Gut microbiota; Histone modification

Indexed keywords

BACTERIUM; DNA METHYLATION; DNA MODIFICATION; EPIGENETICS; HISTONE MODIFICATION; HUMAN; IMMUNE SYSTEM; INTESTINE FLORA; NONHUMAN; PRIORITY JOURNAL; REVIEW; GASTROINTESTINAL TRACT; GENETIC EPIGENESIS; METABOLISM; MICROBIOLOGY; MICROFLORA; PHYSIOLOGY;

EID: 85016057465     PISSN: 01632116     EISSN: 15732568     Source Type: Journal    
DOI: 10.1007/s10620-017-4538-6     Document Type: Review
Times cited : (61)

References (118)
  • 1
    • 84941774602 scopus 로고    scopus 로고
    • In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project’s reference genome database
    • PID: 26377179
    • Walsh CJ, Guinane CM, Hill C, Ross RP, O’Toole PW, Cotter PD. In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project’s reference genome database. BMC Microbiol. 2015;15:183.
    • (2015) BMC Microbiol , vol.15 , pp. 183
    • Walsh, C.J.1    Guinane, C.M.2    Hill, C.3    Ross, R.P.4    O’Toole, P.W.5    Cotter, P.D.6
  • 2
    • 84969704060 scopus 로고    scopus 로고
    • Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation
    • COI: 1:CAS:528:DC%2BC28Xnt1Ogsrg%3D, PID: 27144353
    • Browne HP, Forster SC, Anonye BO, et al. Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation. Nature. 2016;533:543–546.
    • (2016) Nature , vol.533 , pp. 543-546
    • Browne, H.P.1    Forster, S.C.2    Anonye, B.O.3
  • 3
    • 84878709716 scopus 로고    scopus 로고
    • Gut metagenome in European women with normal, impaired and diabetic glucose control
    • COI: 1:CAS:528:DC%2BC3sXotlGls7k%3D, PID: 23719380
    • Karlsson FH, Tremaroli V, Nookaew I, et al. Gut metagenome in European women with normal, impaired and diabetic glucose control. Nature. 2013;498:99–103.
    • (2013) Nature , vol.498 , pp. 99-103
    • Karlsson, F.H.1    Tremaroli, V.2    Nookaew, I.3
  • 4
    • 84997509307 scopus 로고    scopus 로고
    • The Drosophila transcriptional network is structured by microbiota
    • Dobson AJ, Chaston JM, Douglas AE. The Drosophila transcriptional network is structured by microbiota. BMC Genom. 2016;17:975.
    • (2016) BMC Genom , vol.17 , pp. 975
    • Dobson, A.J.1    Chaston, J.M.2    Douglas, A.E.3
  • 5
    • 84929398296 scopus 로고    scopus 로고
    • Bacterial secretions of nonpathogenic Escherichia coli elicit inflammatory pathways: a closer investigation of interkingdom signaling
    • PID: 25759496
    • Zargar A, Quan DN, Carter KK, et al. Bacterial secretions of nonpathogenic Escherichia coli elicit inflammatory pathways: a closer investigation of interkingdom signaling. MBio. 2015;6:e00025.
    • (2015) MBio , vol.6
    • Zargar, A.1    Quan, D.N.2    Carter, K.K.3
  • 6
    • 33745768413 scopus 로고    scopus 로고
    • Short-chain fatty acid mediated phosphorylation of heat shock protein 25: effects on camptothecin-induced apoptosis
    • COI: 1:CAS:528:DC%2BD28XovVWgtb4%3D, PID: 16469826
    • Parhar K, Baer KA, Parker K, Ropeleski MJ. Short-chain fatty acid mediated phosphorylation of heat shock protein 25: effects on camptothecin-induced apoptosis. Am J Physiol Gastrointest Liver Physiol. 2006;291:G178–G188.
    • (2006) Am J Physiol Gastrointest Liver Physiol , vol.291 , pp. G178-G188
    • Parhar, K.1    Baer, K.A.2    Parker, K.3    Ropeleski, M.J.4
  • 7
    • 79960556965 scopus 로고    scopus 로고
    • Epigenome-wide association studies for common human diseases
    • COI: 1:CAS:528:DC%2BC3MXovFyjtbg%3D, PID: 21747404
    • Rakyan VK, Down TA, Balding DJ, Beck S. Epigenome-wide association studies for common human diseases. Nat Rev Genet. 2011;12:529–541.
    • (2011) Nat Rev Genet , vol.12 , pp. 529-541
    • Rakyan, V.K.1    Down, T.A.2    Balding, D.J.3    Beck, S.4
  • 8
    • 84978919885 scopus 로고    scopus 로고
    • Early-life nutrition modulates the epigenetic state of specific rDNA genetic variants in mice
    • COI: 1:CAS:528:DC%2BC28Xht1ehtL7E, PID: 27386920
    • Holland ML, Lowe R, Caton PW, et al. Early-life nutrition modulates the epigenetic state of specific rDNA genetic variants in mice. Science. 2016;353:495–498.
    • (2016) Science , vol.353 , pp. 495-498
    • Holland, M.L.1    Lowe, R.2    Caton, P.W.3
  • 9
    • 84926052364 scopus 로고    scopus 로고
    • Conrad Waddington and the origin of epigenetics
    • PID: 25788723
    • Noble D. Conrad Waddington and the origin of epigenetics. J Exp Biol. 2015;218:816–818.
    • (2015) J Exp Biol , vol.218 , pp. 816-818
    • Noble, D.1
  • 10
    • 41349085806 scopus 로고    scopus 로고
    • Nutritional control of reproductive status in honeybees via DNA methylation
    • COI: 1:CAS:528:DC%2BD1cXjs12ksbc%3D, PID: 18339900
    • Kucharski R, Maleszka J, Foret S, Maleszka R. Nutritional control of reproductive status in honeybees via DNA methylation. Science. 2008;319:1827–1830.
    • (2008) Science , vol.319 , pp. 1827-1830
    • Kucharski, R.1    Maleszka, J.2    Foret, S.3    Maleszka, R.4
  • 11
    • 84890486529 scopus 로고    scopus 로고
    • Long-term effects of environmental endocrine disruptors on reproductive physiology and behavior
    • PID: 19587848
    • Patisaul HB, Adewale HB. Long-term effects of environmental endocrine disruptors on reproductive physiology and behavior. Front Behav Neurosci. 2009;3:10.
    • (2009) Front Behav Neurosci , vol.3 , pp. 10
    • Patisaul, H.B.1    Adewale, H.B.2
  • 12
    • 84881476916 scopus 로고    scopus 로고
    • Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells
    • COI: 1:CAS:528:DC%2BC3sXhtVKhu7bN, PID: 23812591
    • Blaschke K, Ebata KT, Karimi MM, et al. Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells. Nature. 2013;500:222–226.
    • (2013) Nature , vol.500 , pp. 222-226
    • Blaschke, K.1    Ebata, K.T.2    Karimi, M.M.3
  • 13
    • 84929628130 scopus 로고    scopus 로고
    • Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation
    • PID: 25074712
    • Lou S, Lee HM, Qin H, et al. Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation. Genome Biol. 2014;15:408.
    • (2014) Genome Biol , vol.15 , pp. 408
    • Lou, S.1    Lee, H.M.2    Qin, H.3
  • 14
    • 77951116072 scopus 로고    scopus 로고
    • CpG islands influence chromatin structure via the CpG-binding protein Cfp1
    • COI: 1:CAS:528:DC%2BC3cXkslartbc%3D, PID: 20393567
    • Thomson JP, Skene PJ, Selfridge J, et al. CpG islands influence chromatin structure via the CpG-binding protein Cfp1. Nature. 2010;464:1082–1086.
    • (2010) Nature , vol.464 , pp. 1082-1086
    • Thomson, J.P.1    Skene, P.J.2    Selfridge, J.3
  • 15
    • 77957970301 scopus 로고    scopus 로고
    • Epigenetic modifications and human disease
    • COI: 1:CAS:528:DC%2BC3cXht1yjsLzF, PID: 20944598
    • Portela A, Esteller M. Epigenetic modifications and human disease. Nat Biotechnol. 2010;28:1057–1068.
    • (2010) Nat Biotechnol , vol.28 , pp. 1057-1068
    • Portela, A.1    Esteller, M.2
  • 16
    • 0345357773 scopus 로고    scopus 로고
    • Gene silencing in cancer in association with promoter hypermethylation
    • COI: 1:CAS:528:DC%2BD3sXptFKmu7s%3D, PID: 14627790
    • Herman JG, Baylin SB. Gene silencing in cancer in association with promoter hypermethylation. N Engl J Med. 2003;349:2042–2054.
    • (2003) N Engl J Med , vol.349 , pp. 2042-2054
    • Herman, J.G.1    Baylin, S.B.2
  • 17
    • 77954504873 scopus 로고    scopus 로고
    • Conserved role of intragenic DNA methylation in regulating alternative promoters
    • COI: 1:CAS:528:DC%2BC3cXosVKiu70%3D, PID: 20613842
    • Maunakea AK, Nagarajan RP, Bilenky M, et al. Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature. 2010;466:253–257.
    • (2010) Nature , vol.466 , pp. 253-257
    • Maunakea, A.K.1    Nagarajan, R.P.2    Bilenky, M.3
  • 18
    • 0034619794 scopus 로고    scopus 로고
    • A Toll-like receptor recognizes bacterial DNA
    • COI: 1:CAS:528:DC%2BD3cXptVCqsL0%3D, PID: 11130078
    • Hemmi H, Takeuchi O, Kawai T, et al. A Toll-like receptor recognizes bacterial DNA. Nature. 2000;408:740–745.
    • (2000) Nature , vol.408 , pp. 740-745
    • Hemmi, H.1    Takeuchi, O.2    Kawai, T.3
  • 19
    • 84954217538 scopus 로고    scopus 로고
    • Monoallelic germline methylation and sequence variant in the promoter of the RB1 gene: a possible constitutive epimutation in hereditary retinoblastoma
    • PID: 26753011
    • Quinonez-Silva G, Davalos-Salas M, Recillas-Targa F, Ostrosky-Wegman P, Aranda DA, Benitez-Bribiesca L. Monoallelic germline methylation and sequence variant in the promoter of the RB1 gene: a possible constitutive epimutation in hereditary retinoblastoma. Clin Epigenetics. 2016;8:1.
    • (2016) Clin Epigenetics , vol.8 , pp. 1
    • Quinonez-Silva, G.1    Davalos-Salas, M.2    Recillas-Targa, F.3    Ostrosky-Wegman, P.4    Aranda, D.A.5    Benitez-Bribiesca, L.6
  • 20
    • 84867145980 scopus 로고    scopus 로고
    • On the presence and role of human gene-body DNA methylation
    • PID: 22577155
    • Jjingo D, Conley AB, Yi SV, Lunyak VV, Jordan IK. On the presence and role of human gene-body DNA methylation. Oncotarget. 2012;3:462–474.
    • (2012) Oncotarget , vol.3 , pp. 462-474
    • Jjingo, D.1    Conley, A.B.2    Yi, S.V.3    Lunyak, V.V.4    Jordan, I.K.5
  • 21
    • 84871119502 scopus 로고    scopus 로고
    • MLH1 region polymorphisms show a significant association with CpG island shore methylation in a large cohort of healthy individuals
    • COI: 1:CAS:528:DC%2BC38XhvFSksLrO, PID: 23240038
    • Savio AJ, Lemire M, Mrkonjic M, et al. MLH1 region polymorphisms show a significant association with CpG island shore methylation in a large cohort of healthy individuals. PLoS ONE. 2012;7:e51531.
    • (2012) PLoS ONE , vol.7
    • Savio, A.J.1    Lemire, M.2    Mrkonjic, M.3
  • 22
    • 59149084538 scopus 로고    scopus 로고
    • The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
    • COI: 1:CAS:528:DC%2BD1MXntFGrtA%3D%3D, PID: 19151715
    • Irizarry RA, Ladd-Acosta C, Wen B, et al. The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nat Genet. 2009;41:178–186.
    • (2009) Nat Genet , vol.41 , pp. 178-186
    • Irizarry, R.A.1    Ladd-Acosta, C.2    Wen, B.3
  • 23
    • 84989172058 scopus 로고    scopus 로고
    • Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos
    • COI: 1:CAS:528:DC%2BC28XhsFWiurbO, PID: 27626379
    • Liu X, Wang C, Liu W, et al. Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos. Nature. 2016;537:558–562.
    • (2016) Nature , vol.537 , pp. 558-562
    • Liu, X.1    Wang, C.2    Liu, W.3
  • 24
    • 0038661090 scopus 로고    scopus 로고
    • Equilibrium folding of the core histones: the H3–H4 tetramer is less stable than the H2A–H2B dimer
    • COI: 1:CAS:528:DC%2BD3sXjs12ktrg%3D, PID: 12779337
    • Banks DD, Gloss LM. Equilibrium folding of the core histones: the H3–H4 tetramer is less stable than the H2A–H2B dimer. Biochemistry. 2003;42:6827–6839.
    • (2003) Biochemistry , vol.42 , pp. 6827-6839
    • Banks, D.D.1    Gloss, L.M.2
  • 25
    • 27844519267 scopus 로고    scopus 로고
    • HP1 binds specifically to Lys26-methylated histone H1.4, whereas simultaneous Ser27 phosphorylation blocks HP1 binding
    • COI: 1:CAS:528:DC%2BD2MXhtF2is7zK, PID: 16127177
    • Daujat S, Zeissler U, Waldmann T, Happel N, Schneider R. HP1 binds specifically to Lys26-methylated histone H1.4, whereas simultaneous Ser27 phosphorylation blocks HP1 binding. J Biol Chem. 2005;280:38090–38095.
    • (2005) J Biol Chem , vol.280 , pp. 38090-38095
    • Daujat, S.1    Zeissler, U.2    Waldmann, T.3    Happel, N.4    Schneider, R.5
  • 26
    • 33644851413 scopus 로고    scopus 로고
    • Recognition and classification of histones using support vector machine
    • COI: 1:CAS:528:DC%2BD28XhtlSqs7s%3D, PID: 16472024
    • Bhasin M, Reinherz EL, Reche PA. Recognition and classification of histones using support vector machine. J Comput Biol. 2006;13:102–112.
    • (2006) J Comput Biol , vol.13 , pp. 102-112
    • Bhasin, M.1    Reinherz, E.L.2    Reche, P.A.3
  • 27
    • 0030799238 scopus 로고    scopus 로고
    • Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance
    • COI: 1:CAS:528:DyaK2sXls1Gqu78%3D, PID: 9284051
    • Chen ZJ, Pikaard CS. Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance. Genes Dev. 1997;11:2124–2136.
    • (1997) Genes Dev , vol.11 , pp. 2124-2136
    • Chen, Z.J.1    Pikaard, C.S.2
  • 28
    • 33646542012 scopus 로고    scopus 로고
    • Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance
    • COI: 1:CAS:528:DC%2BD28XltVyrtbs%3D, PID: 16648464
    • Earley K, Lawrence RJ, Pontes O, et al. Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance. Genes Dev. 2006;20:1283–1293.
    • (2006) Genes Dev , vol.20 , pp. 1283-1293
    • Earley, K.1    Lawrence, R.J.2    Pontes, O.3
  • 29
    • 1542285163 scopus 로고    scopus 로고
    • A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance
    • COI: 1:CAS:528:DC%2BD2cXitV2gtro%3D, PID: 14992728
    • Lawrence RJ, Earley K, Pontes O, et al. A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance. Mol Cell. 2004;13:599–609.
    • (2004) Mol Cell , vol.13 , pp. 599-609
    • Lawrence, R.J.1    Earley, K.2    Pontes, O.3
  • 30
    • 84863980221 scopus 로고    scopus 로고
    • Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis
    • COI: 1:CAS:528:DC%2BC38Xht1WqtLzL, PID: 22733760
    • Li X, Qian W, Zhao Y, et al. Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis. Proc Natl Acad Sci USA. 2012;109:11425–11430.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 11425-11430
    • Li, X.1    Qian, W.2    Zhao, Y.3
  • 31
    • 79957516031 scopus 로고    scopus 로고
    • NMR profiling of histone deacetylase and acetyl-transferase activities in real time
    • COI: 1:CAS:528:DC%2BC3MXivVSisLs%3D, PID: 21302972
    • Dose A, Liokatis S, Theillet FX, Selenko P, Schwarzer D. NMR profiling of histone deacetylase and acetyl-transferase activities in real time. ACS Chem Biol. 2011;6:419–424.
    • (2011) ACS Chem Biol , vol.6 , pp. 419-424
    • Dose, A.1    Liokatis, S.2    Theillet, F.X.3    Selenko, P.4    Schwarzer, D.5
  • 32
    • 84907731374 scopus 로고    scopus 로고
    • A role for histone deacetylases in the cellular and behavioral mechanisms underlying learning and memory
    • COI: 1:CAS:528:DC%2BC2cXitVyit7nN, PID: 25227251
    • Mahgoub M, Monteggia LM. A role for histone deacetylases in the cellular and behavioral mechanisms underlying learning and memory. Learn Mem. 2014;21:564–568.
    • (2014) Learn Mem , vol.21 , pp. 564-568
    • Mahgoub, M.1    Monteggia, L.M.2
  • 33
    • 84937521120 scopus 로고    scopus 로고
    • Design, synthesis and preliminary biological evaluation of indoline-2,3-dione derivatives as novel HDAC inhibitors
    • COI: 1:CAS:528:DC%2BC2MXhtVSqs7bK, PID: 26100440
    • Jin K, Li S, Li X, Zhang J, Xu W. Design, synthesis and preliminary biological evaluation of indoline-2,3-dione derivatives as novel HDAC inhibitors. Bioorg Med Chem. 2015;23:4728–4736.
    • (2015) Bioorg Med Chem , vol.23 , pp. 4728-4736
    • Jin, K.1    Li, S.2    Li, X.3    Zhang, J.4    Xu, W.5
  • 34
    • 84956723148 scopus 로고    scopus 로고
    • H3K4 tri-methylation breadth at transcription start sites impacts the transcriptome of systemic lupus erythematosus
    • PID: 26839600
    • Zhang Z, Shi L, Dawany N, Kelsen J, Petri MA, Sullivan KE. H3K4 tri-methylation breadth at transcription start sites impacts the transcriptome of systemic lupus erythematosus. Clin Epigenetics. 2016;8:14.
    • (2016) Clin Epigenetics , vol.8 , pp. 14
    • Zhang, Z.1    Shi, L.2    Dawany, N.3    Kelsen, J.4    Petri, M.A.5    Sullivan, K.E.6
  • 35
    • 84956907988 scopus 로고    scopus 로고
    • Role of growth arrest and DNA damage-inducible, beta in alcohol-drinking behaviors
    • COI: 1:CAS:528:DC%2BC28XitlGqtL0%3D, PID: 26842245
    • Gavin DP, Kusumo H, Zhang H, Guidotti A, Pandey SC. Role of growth arrest and DNA damage-inducible, beta in alcohol-drinking behaviors. Alcohol Clin Exp Res. 2016;40:263–272.
    • (2016) Alcohol Clin Exp Res , vol.40 , pp. 263-272
    • Gavin, D.P.1    Kusumo, H.2    Zhang, H.3    Guidotti, A.4    Pandey, S.C.5
  • 36
    • 84954526208 scopus 로고    scopus 로고
    • Both diet and gene mutation induced obesity affect oocyte quality in mice
    • COI: 1:CAS:528:DC%2BC28XltFGhtg%3D%3D, PID: 26732298
    • Hou YJ, Zhu CC, Duan X, Liu HL, Wang Q, Sun SC. Both diet and gene mutation induced obesity affect oocyte quality in mice. Sci Rep. 2016;6:18858.
    • (2016) Sci Rep , vol.6 , pp. 18858
    • Hou, Y.J.1    Zhu, C.C.2    Duan, X.3    Liu, H.L.4    Wang, Q.5    Sun, S.C.6
  • 37
    • 84956953910 scopus 로고    scopus 로고
    • Transition state for the NSD2-catalyzed methylation of histone H3 lysine 36
    • COI: 1:CAS:528:DC%2BC28XhtFShtLw%3D, PID: 26787850
    • Poulin MB, Schneck JL, Matico RE, et al. Transition state for the NSD2-catalyzed methylation of histone H3 lysine 36. Proc Natl Acad Sci USA. 2016;113:1197–1201.
    • (2016) Proc Natl Acad Sci USA , vol.113 , pp. 1197-1201
    • Poulin, M.B.1    Schneck, J.L.2    Matico, R.E.3
  • 38
    • 84957547988 scopus 로고    scopus 로고
    • Evidence that ubiquitylated H2B corrals hDot1L on the nucleosomal surface to induce H3K79 methylation
    • COI: 1:CAS:528:DC%2BC28XitVOlt7o%3D, PID: 26830124
    • Zhou L, Holt MT, Ohashi N, et al. Evidence that ubiquitylated H2B corrals hDot1L on the nucleosomal surface to induce H3K79 methylation. Nat Commun. 2016;7:10589.
    • (2016) Nat Commun , vol.7 , pp. 10589
    • Zhou, L.1    Holt, M.T.2    Ohashi, N.3
  • 39
    • 84876124887 scopus 로고    scopus 로고
    • Oxidative stress and chromatin remodeling in chronic obstructive pulmonary disease and smoking-related diseases
    • COI: 1:CAS:528:DC%2BC3sXlsF2lur8%3D, PID: 22978694
    • Sundar IK, Yao H, Rahman I. Oxidative stress and chromatin remodeling in chronic obstructive pulmonary disease and smoking-related diseases. Antioxid Redox Signal. 2013;18:1956–1971.
    • (2013) Antioxid Redox Signal , vol.18 , pp. 1956-1971
    • Sundar, I.K.1    Yao, H.2    Rahman, I.3
  • 40
    • 84956671055 scopus 로고    scopus 로고
    • Evolution and conservation of JmjC domain proteins in the green lineage
    • COI: 1:CAS:528:DC%2BC2MXhtFehurvE, PID: 26152513
    • Huang Y, Chen D, Liu C, Shen W, Ruan Y. Evolution and conservation of JmjC domain proteins in the green lineage. Mol Genet Genomics. 2016;291:33–49.
    • (2016) Mol Genet Genomics , vol.291 , pp. 33-49
    • Huang, Y.1    Chen, D.2    Liu, C.3    Shen, W.4    Ruan, Y.5
  • 41
    • 84928640073 scopus 로고    scopus 로고
    • Frequent SOCS3 and 3OST2 promoter methylation and their epigenetic regulation in endometrial carcinoma
    • COI: 1:CAS:528:DC%2BC28XpsFOrsLc%3D, PID: 25628929
    • Chen H, Zhang C, Sheng Y, Yao S, Liu Z, Zhang T. Frequent SOCS3 and 3OST2 promoter methylation and their epigenetic regulation in endometrial carcinoma. Am J Cancer Res. 2015;5:180–190.
    • (2015) Am J Cancer Res , vol.5 , pp. 180-190
    • Chen, H.1    Zhang, C.2    Sheng, Y.3    Yao, S.4    Liu, Z.5    Zhang, T.6
  • 42
    • 84938526863 scopus 로고    scopus 로고
    • PRMT4 is involved in insulin secretion via the methylation of histone H3 in pancreatic beta cells
    • COI: 1:CAS:528:DC%2BC2MXhsFKjtLrF, PID: 25917831
    • Kim JK, Lim Y, Lee JO, et al. PRMT4 is involved in insulin secretion via the methylation of histone H3 in pancreatic beta cells. J Mol Endocrinol. 2015;54:315–324.
    • (2015) J Mol Endocrinol , vol.54 , pp. 315-324
    • Kim, J.K.1    Lim, Y.2    Lee, J.O.3
  • 43
    • 84907588752 scopus 로고    scopus 로고
    • Targeted H3R26 deimination specifically facilitates estrogen receptor binding by modifying nucleosome structure
    • PID: 25211228
    • Guertin MJ, Zhang X, Anguish L, et al. Targeted H3R26 deimination specifically facilitates estrogen receptor binding by modifying nucleosome structure. PLoS Genet. 2014;10:e1004613.
    • (2014) PLoS Genet , vol.10
    • Guertin, M.J.1    Zhang, X.2    Anguish, L.3
  • 44
    • 73449105432 scopus 로고    scopus 로고
    • Identification of histone methylation multiplicities patterns in the brain of senescence-accelerated prone mouse 8
    • COI: 1:CAS:528:DC%2BC3cXjtlCqug%3D%3D, PID: 19434510
    • Wang CM, Tsai SN, Yew TW, Kwan YW, Ngai SM. Identification of histone methylation multiplicities patterns in the brain of senescence-accelerated prone mouse 8. Biogerontology. 2010;11:87–102.
    • (2010) Biogerontology , vol.11 , pp. 87-102
    • Wang, C.M.1    Tsai, S.N.2    Yew, T.W.3    Kwan, Y.W.4    Ngai, S.M.5
  • 45
    • 34848885467 scopus 로고    scopus 로고
    • Interplay between chromatin remodelers and protein arginine methyltransferases
    • COI: 1:CAS:528:DC%2BD2sXhtFKnu73F, PID: 17708529
    • Pal S, Sif S. Interplay between chromatin remodelers and protein arginine methyltransferases. J Cell Physiol. 2007;213:306–315.
    • (2007) J Cell Physiol , vol.213 , pp. 306-315
    • Pal, S.1    Sif, S.2
  • 46
    • 84865526587 scopus 로고    scopus 로고
    • Protein arginine methyltransferase 7 regulates cellular response to DNA damage by methylating promoter histones H2A and H4 of the polymerase delta catalytic subunit gene, POLD1
    • COI: 1:CAS:528:DC%2BC38Xht1CgtrrE, PID: 22761421
    • Karkhanis V, Wang L, Tae S, Hu YJ, Imbalzano AN, Sif S. Protein arginine methyltransferase 7 regulates cellular response to DNA damage by methylating promoter histones H2A and H4 of the polymerase delta catalytic subunit gene, POLD1. J Biol Chem. 2012;287:29801–29814.
    • (2012) J Biol Chem , vol.287 , pp. 29801-29814
    • Karkhanis, V.1    Wang, L.2    Tae, S.3    Hu, Y.J.4    Imbalzano, A.N.5    Sif, S.6
  • 47
    • 84901065053 scopus 로고    scopus 로고
    • The epigenetic regulator Uhrf1 facilitates the proliferation and maturation of colonic regulatory T cells
    • COI: 1:CAS:528:DC%2BC2cXmvFSjt7s%3D, PID: 24777532
    • Obata Y, Furusawa Y, Endo TA, et al. The epigenetic regulator Uhrf1 facilitates the proliferation and maturation of colonic regulatory T cells. Nat Immunol. 2014;15:571–579.
    • (2014) Nat Immunol , vol.15 , pp. 571-579
    • Obata, Y.1    Furusawa, Y.2    Endo, T.A.3
  • 48
    • 84874691463 scopus 로고    scopus 로고
    • Temporal stability of the mouse gut microbiota in relation to innate and adaptive immunity
    • COI: 1:CAS:528:DC%2BC3sXmsVCktLc%3D, PID: 23584963
    • Dimitriu PA, Boyce G, Samarakoon A, Hartmann M, Johnson P, Mohn WW. Temporal stability of the mouse gut microbiota in relation to innate and adaptive immunity. Environ Microbiol Rep. 2013;5:200–210.
    • (2013) Environ Microbiol Rep , vol.5 , pp. 200-210
    • Dimitriu, P.A.1    Boyce, G.2    Samarakoon, A.3    Hartmann, M.4    Johnson, P.5    Mohn, W.W.6
  • 49
    • 84896064402 scopus 로고    scopus 로고
    • Gut microbiota promote hematopoiesis to control bacterial infection
    • COI: 1:CAS:528:DC%2BC2cXks1Olsr4%3D, PID: 24629343
    • Khosravi A, Yanez A, Price JG, et al. Gut microbiota promote hematopoiesis to control bacterial infection. Cell Host Microbe. 2014;15:374–381.
    • (2014) Cell Host Microbe , vol.15 , pp. 374-381
    • Khosravi, A.1    Yanez, A.2    Price, J.G.3
  • 50
    • 77954928774 scopus 로고    scopus 로고
    • Maintaining cell identity through global control of genomic organization
    • COI: 1:CAS:528:DC%2BC3cXpsVahs7c%3D, PID: 20643336
    • Natoli G. Maintaining cell identity through global control of genomic organization. Immunity. 2010;33:12–24.
    • (2010) Immunity , vol.33 , pp. 12-24
    • Natoli, G.1
  • 51
    • 79953134246 scopus 로고    scopus 로고
    • Genomic views of STAT function in CD4 + T helper cell differentiation
    • PID: 21436836
    • O’Shea JJ, Lahesmaa R, Vahedi G, Laurence A, Kanno Y. Genomic views of STAT function in CD4 + T helper cell differentiation. Nat Rev Immunol. 2011;11:239–250.
    • (2011) Nat Rev Immunol , vol.11 , pp. 239-250
    • O’Shea, J.J.1    Lahesmaa, R.2    Vahedi, G.3    Laurence, A.4    Kanno, Y.5
  • 52
    • 84946912433 scopus 로고    scopus 로고
    • Epigenetic silencing of TH1-type chemokines shapes tumour immunity and immunotherapy
    • COI: 1:CAS:528:DC%2BC2MXhslOrtLjI, PID: 26503055
    • Peng D, Kryczek I, Nagarsheth N, et al. Epigenetic silencing of TH1-type chemokines shapes tumour immunity and immunotherapy. Nature. 2015;527:249–253.
    • (2015) Nature , vol.527 , pp. 249-253
    • Peng, D.1    Kryczek, I.2    Nagarsheth, N.3
  • 53
    • 84863724616 scopus 로고    scopus 로고
    • An epigenetic silencing pathway controlling T helper 2 cell lineage commitment
    • COI: 1:CAS:528:DC%2BC38XhtVWisLvF, PID: 22763435
    • Allan RS, Zueva E, Cammas F, et al. An epigenetic silencing pathway controlling T helper 2 cell lineage commitment. Nature. 2012;487:249–253.
    • (2012) Nature , vol.487 , pp. 249-253
    • Allan, R.S.1    Zueva, E.2    Cammas, F.3
  • 54
    • 84942615814 scopus 로고    scopus 로고
    • Postnatal epigenetic regulation of intestinal stem cells requires DNA methylation and is guided by the microbiome
    • PID: 26420038
    • Yu DH, Gadkari M, Zhou Q, et al. Postnatal epigenetic regulation of intestinal stem cells requires DNA methylation and is guided by the microbiome. Genome Biol. 2015;16:211.
    • (2015) Genome Biol , vol.16 , pp. 211
    • Yu, D.H.1    Gadkari, M.2    Zhou, Q.3
  • 55
    • 84954401404 scopus 로고    scopus 로고
    • Choline metabolites: gene by diet interactions
    • COI: 1:CAS:528:DC%2BC28XitVegtA%3D%3D, PID: 26655287
    • Smallwood T, Allayee H, Bennett BJ. Choline metabolites: gene by diet interactions. Curr Opin Lipidol. 2016;27:33–39.
    • (2016) Curr Opin Lipidol , vol.27 , pp. 33-39
    • Smallwood, T.1    Allayee, H.2    Bennett, B.J.3
  • 56
    • 84943154364 scopus 로고    scopus 로고
    • Assessing the adequacy of essential nutrient intake in obese dogs undergoing energy restriction for weight loss: a cohort study
    • PID: 26446678
    • German AJ, Holden SL, Serisier S, Queau Y, Biourge V. Assessing the adequacy of essential nutrient intake in obese dogs undergoing energy restriction for weight loss: a cohort study. BMC Vet Res. 2015;11:253.
    • (2015) BMC Vet Res , vol.11 , pp. 253
    • German, A.J.1    Holden, S.L.2    Serisier, S.3    Queau, Y.4    Biourge, V.5
  • 57
    • 84944112153 scopus 로고    scopus 로고
    • Influences of diet and the gut microbiome on epigenetic modulation in cancer and other diseases
    • PID: 26478753
    • Paul B, Barnes S, Demark-Wahnefried W, et al. Influences of diet and the gut microbiome on epigenetic modulation in cancer and other diseases. Clin Epigenetics. 2015;7:112.
    • (2015) Clin Epigenetics , vol.7 , pp. 112
    • Paul, B.1    Barnes, S.2    Demark-Wahnefried, W.3
  • 58
    • 58349094740 scopus 로고    scopus 로고
    • Epigallocatechin-3-gallate, a histone acetyltransferase inhibitor, inhibits EBV-induced B lymphocyte transformation via suppression of RelA acetylation
    • COI: 1:CAS:528:DC%2BD1MXltFShtg%3D%3D, PID: 19147572
    • Choi KC, Jung MG, Lee YH, et al. Epigallocatechin-3-gallate, a histone acetyltransferase inhibitor, inhibits EBV-induced B lymphocyte transformation via suppression of RelA acetylation. Cancer Res. 2009;69:583–592.
    • (2009) Cancer Res , vol.69 , pp. 583-592
    • Choi, K.C.1    Jung, M.G.2    Lee, Y.H.3
  • 59
    • 84861476719 scopus 로고    scopus 로고
    • EGCG suppresses prostate cancer cell growth modulating acetylation of androgen receptor by anti-histone acetyltransferase activity
    • COI: 1:CAS:528:DC%2BC38Xpt1yitLs%3D, PID: 22505206
    • Lee YH, Kwak J, Choi HK, et al. EGCG suppresses prostate cancer cell growth modulating acetylation of androgen receptor by anti-histone acetyltransferase activity. Int J Mol Med. 2012;30:69–74.
    • (2012) Int J Mol Med , vol.30 , pp. 69-74
    • Lee, Y.H.1    Kwak, J.2    Choi, H.K.3
  • 60
    • 84884414277 scopus 로고    scopus 로고
    • Intestinal microbiota determines development of Nonalcoholic fatty liver disease in mice
    • PID: 23197411
    • Le Roy T, Llopis M, Lepage P, et al. Intestinal microbiota determines development of Nonalcoholic fatty liver disease in mice. Gut. 2013;62:1787–1794.
    • (2013) Gut , vol.62 , pp. 1787-1794
    • Le Roy, T.1    Llopis, M.2    Lepage, P.3
  • 61
    • 0037509909 scopus 로고    scopus 로고
    • Regulation of short-chain fatty acid production
    • COI: 1:CAS:528:DC%2BD3sXjslyhtLc%3D, PID: 12740060
    • Macfarlane S, Macfarlane GT. Regulation of short-chain fatty acid production. Proc Nutr Soc. 2003;62:67–72.
    • (2003) Proc Nutr Soc , vol.62 , pp. 67-72
    • Macfarlane, S.1    Macfarlane, G.T.2
  • 62
    • 84892874108 scopus 로고    scopus 로고
    • Effects of short chain fatty acid producing bacteria on epigenetic regulation of FFAR3 in type 2 diabetes and obesity
    • COI: 1:CAS:528:DC%2BC2cXptF2gsw%3D%3D, PID: 24325907
    • Remely M, Aumueller E, Merold C, et al. Effects of short chain fatty acid producing bacteria on epigenetic regulation of FFAR3 in type 2 diabetes and obesity. Gene. 2014;537:85–92.
    • (2014) Gene , vol.537 , pp. 85-92
    • Remely, M.1    Aumueller, E.2    Merold, C.3
  • 63
    • 79955932718 scopus 로고    scopus 로고
    • Potential beneficial effects of butyrate in intestinal and extraintestinal diseases
    • COI: 1:CAS:528:DC%2BC3MXkvFGqs74%3D, PID: 21472114
    • Canani RB, Costanzo MD, Leone L, Pedata M, Meli R, Calignano A. Potential beneficial effects of butyrate in intestinal and extraintestinal diseases. World J Gastroenterol. 2011;17:1519–1528.
    • (2011) World J Gastroenterol , vol.17 , pp. 1519-1528
    • Canani, R.B.1    Costanzo, M.D.2    Leone, L.3    Pedata, M.4    Meli, R.5    Calignano, A.6
  • 64
    • 81055140116 scopus 로고    scopus 로고
    • A conserved SREBP-1/phosphatidylcholine feedback circuit regulates lipogenesis in metazoans
    • COI: 1:CAS:528:DC%2BC3MXhsVKgsLnF, PID: 22035958
    • Walker AK, Jacobs RL, Watts JL, et al. A conserved SREBP-1/phosphatidylcholine feedback circuit regulates lipogenesis in metazoans. Cell. 2011;147:840–852.
    • (2011) Cell , vol.147 , pp. 840-852
    • Walker, A.K.1    Jacobs, R.L.2    Watts, J.L.3
  • 65
    • 84971673794 scopus 로고    scopus 로고
    • Methylating micronutrient supplementation during pregnancy influences foetal hepatic gene expression and IGF signalling and increases foetal weight
    • COI: 1:CAS:528:DC%2BC2MXht1Srt7fM, PID: 26169873
    • Oster M, Nuchchanart W, Trakooljul N, et al. Methylating micronutrient supplementation during pregnancy influences foetal hepatic gene expression and IGF signalling and increases foetal weight. Eur J Nutr. 2016;55:1717–1727.
    • (2016) Eur J Nutr , vol.55 , pp. 1717-1727
    • Oster, M.1    Nuchchanart, W.2    Trakooljul, N.3
  • 66
    • 84949034269 scopus 로고    scopus 로고
    • Structure of human B12 trafficking protein CblD reveals molecular mimicry and identifies a new subfamily of nitro-FMN reductases
    • COI: 1:CAS:528:DC%2BC2MXhvFGku7%2FI, PID: 26364851
    • Yamada K, Gherasim C, Banerjee R, Koutmos M. Structure of human B12 trafficking protein CblD reveals molecular mimicry and identifies a new subfamily of nitro-FMN reductases. J Biol Chem. 2015;290:29155–29166.
    • (2015) J Biol Chem , vol.290 , pp. 29155-29166
    • Yamada, K.1    Gherasim, C.2    Banerjee, R.3    Koutmos, M.4
  • 67
    • 84879174702 scopus 로고    scopus 로고
    • More than just a gut instinct-the potential interplay between a baby’s nutrition, its gut microbiome, and the epigenome
    • COI: 1:CAS:528:DC%2BC3sXhtVyjtLnM, PID: 23594611
    • Mischke M, Plosch T. More than just a gut instinct-the potential interplay between a baby’s nutrition, its gut microbiome, and the epigenome. Am J Physiol Regul Integr Comp Physiol. 2013;304:R1065–R1069.
    • (2013) Am J Physiol Regul Integr Comp Physiol , vol.304 , pp. R1065-R1069
    • Mischke, M.1    Plosch, T.2
  • 68
    • 79955664245 scopus 로고    scopus 로고
    • Colonic mucosal DNA methylation, immune response, and microbiome patterns in Toll-like receptor 2-knockout mice
    • COI: 1:CAS:528:DC%2BC3MXlvFSmt7s%3D, PID: 21228220
    • Kellermayer R, Dowd SE, Harris RA, et al. Colonic mucosal DNA methylation, immune response, and microbiome patterns in Toll-like receptor 2-knockout mice. FASEB J. 2011;25:1449–1460.
    • (2011) FASEB J , vol.25 , pp. 1449-1460
    • Kellermayer, R.1    Dowd, S.E.2    Harris, R.A.3
  • 69
    • 84896724561 scopus 로고    scopus 로고
    • Influence of bacteria on epigenetic gene control
    • COI: 1:CAS:528:DC%2BC3sXhs1CitbzP, PID: 24132510
    • Takahashi K. Influence of bacteria on epigenetic gene control. Cell Mol Life Sci. 2014;71:1045–1054.
    • (2014) Cell Mol Life Sci , vol.71 , pp. 1045-1054
    • Takahashi, K.1
  • 70
    • 80053922802 scopus 로고    scopus 로고
    • Epigenetic control of the host gene by commensal bacteria in large intestinal epithelial cells
    • COI: 1:CAS:528:DC%2BC3MXht1yhtrnM, PID: 21862578
    • Takahashi K, Sugi Y, Nakano K, et al. Epigenetic control of the host gene by commensal bacteria in large intestinal epithelial cells. J Biol Chem. 2011;286:35755–35762.
    • (2011) J Biol Chem , vol.286 , pp. 35755-35762
    • Takahashi, K.1    Sugi, Y.2    Nakano, K.3
  • 71
    • 84859812538 scopus 로고    scopus 로고
    • Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4
    • COI: 1:CAS:528:DC%2BC38XlvVSmu7s%3D, PID: 22516259
    • Dapito DH, Mencin A, Gwak GY, et al. Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4. Cancer Cell. 2012;21:504–516.
    • (2012) Cancer Cell , vol.21 , pp. 504-516
    • Dapito, D.H.1    Mencin, A.2    Gwak, G.Y.3
  • 72
    • 84920885193 scopus 로고    scopus 로고
    • Gut microbiota as an epigenetic regulator: pilot study based on whole-genome methylation analysis
    • COI: 1:CAS:528:DC%2BC2MXktVOhs7k%3D, PID: 25516615
    • Kumar H, Lund R, Laiho A, et al. Gut microbiota as an epigenetic regulator: pilot study based on whole-genome methylation analysis. MBio. 2014;5:e02113–e02114.
    • (2014) MBio , vol.5 , pp. e02113-e02114
    • Kumar, H.1    Lund, R.2    Laiho, A.3
  • 73
    • 77949275834 scopus 로고    scopus 로고
    • Persistence of a component of DNA methylation in gastric mucosae after Helicobacter pylori eradication
    • COI: 1:CAS:528:DC%2BC3cXpslansA%3D%3D, PID: 19821005
    • Nakajima T, Enomoto S, Yamashita S, et al. Persistence of a component of DNA methylation in gastric mucosae after Helicobacter pylori eradication. J Gastroenterol. 2010;45:37–44.
    • (2010) J Gastroenterol , vol.45 , pp. 37-44
    • Nakajima, T.1    Enomoto, S.2    Yamashita, S.3
  • 74
    • 84910145153 scopus 로고    scopus 로고
    • Epigenetic silencing of miR-210 increases the proliferation of gastric epithelium during chronic Helicobacter pylori infection
    • COI: 1:CAS:528:DC%2BC2cXitVShsb%2FO, PID: 25187177
    • Kiga K, Mimuro H, Suzuki M, et al. Epigenetic silencing of miR-210 increases the proliferation of gastric epithelium during chronic Helicobacter pylori infection. Nat Commun. 2014;5:4497.
    • (2014) Nat Commun , vol.5 , pp. 4497
    • Kiga, K.1    Mimuro, H.2    Suzuki, M.3
  • 75
    • 32944459562 scopus 로고    scopus 로고
    • High levels of aberrant DNA methylation in Helicobacter pylori-infected gastric mucosae and its possible association with gastric cancer risk
    • COI: 1:CAS:528:DC%2BD28XhtFehsr0%3D, PID: 16467114
    • Maekita T, Nakazawa K, Mihara M, et al. High levels of aberrant DNA methylation in Helicobacter pylori-infected gastric mucosae and its possible association with gastric cancer risk. Clin Cancer Res. 2006;12:989–995.
    • (2006) Clin Cancer Res , vol.12 , pp. 989-995
    • Maekita, T.1    Nakazawa, K.2    Mihara, M.3
  • 76
    • 84961393333 scopus 로고    scopus 로고
    • Epigenome-microbiome crosstalk: a potential new paradigm influencing neonatal susceptibility to disease
    • PID: 26909656
    • Cortese R, Lu L, Yu Y, Ruden D, Claud EC. Epigenome-microbiome crosstalk: a potential new paradigm influencing neonatal susceptibility to disease. Epigenetics. 2016;11:205–215.
    • (2016) Epigenetics , vol.11 , pp. 205-215
    • Cortese, R.1    Lu, L.2    Yu, Y.3    Ruden, D.4    Claud, E.C.5
  • 77
    • 69949161222 scopus 로고    scopus 로고
    • Degradation and metabolism of catechin, epigallocatechin-3-gallate (EGCG), and related compounds by the intestinal microbiota in the pig cecum model
    • PID: 19670865
    • van’t Slot G, Humpf HU. Degradation and metabolism of catechin, epigallocatechin-3-gallate (EGCG), and related compounds by the intestinal microbiota in the pig cecum model. J Agric Food Chem. 2009;57:8041–8048.
    • (2009) J Agric Food Chem , vol.57 , pp. 8041-8048
    • van’t Slot, G.1    Humpf, H.U.2
  • 78
    • 40449117981 scopus 로고    scopus 로고
    • Influence of cooking duration of cabbage and presence of colonic microbiota on the excretion of N-acetylcysteine conjugates of allyl isothiocyanate and bioactivity of phase 2 enzymes in F344 rats
    • COI: 1:CAS:528:DC%2BD1cXkvFegsLs%3D, PID: 17967216
    • Rungapamestry V, Rabot S, Fuller Z, Ratcliffe B, Duncan AJ. Influence of cooking duration of cabbage and presence of colonic microbiota on the excretion of N-acetylcysteine conjugates of allyl isothiocyanate and bioactivity of phase 2 enzymes in F344 rats. Br J Nutr. 2008;99:773–781.
    • (2008) Br J Nutr , vol.99 , pp. 773-781
    • Rungapamestry, V.1    Rabot, S.2    Fuller, Z.3    Ratcliffe, B.4    Duncan, A.J.5
  • 79
    • 84999836339 scopus 로고    scopus 로고
    • Impact of the microbial derived short chain fatty acid propionate on host susceptibility to bacterial and fungal infections in vivo
    • COI: 1:CAS:528:DC%2BC28XitFWgtbjI, PID: 27897220
    • Ciarlo E, Heinonen T, Herderschee J, et al. Impact of the microbial derived short chain fatty acid propionate on host susceptibility to bacterial and fungal infections in vivo. Sci Rep. 2016;6:37944.
    • (2016) Sci Rep , vol.6 , pp. 37944
    • Ciarlo, E.1    Heinonen, T.2    Herderschee, J.3
  • 80
    • 85012050354 scopus 로고    scopus 로고
    • Down-regulation of claudin-2 expression and proliferation by epigenetic inhibitors in human lung adenocarcinoma A549 cells
    • COI: 1:CAS:528:DC%2BC2sXisVGisL4%3D, PID: 28057758
    • Hichino A, Okamoto M, Taga S, et al. Down-regulation of claudin-2 expression and proliferation by epigenetic inhibitors in human lung adenocarcinoma A549 cells. J Biol Chem. 2017;292:2411–2421.
    • (2017) J Biol Chem , vol.292 , pp. 2411-2421
    • Hichino, A.1    Okamoto, M.2    Taga, S.3
  • 81
    • 85006791329 scopus 로고    scopus 로고
    • Histone deacetylase inhibitors mediate DNA damage repair in ameliorating hemorrhagic cystitis
    • COI: 1:CAS:528:DC%2BC28XitFGjtbvJ, PID: 27995963
    • Haldar S, Dru C, Mishra R, et al. Histone deacetylase inhibitors mediate DNA damage repair in ameliorating hemorrhagic cystitis. Sci Rep. 2016;6:39257.
    • (2016) Sci Rep , vol.6 , pp. 39257
    • Haldar, S.1    Dru, C.2    Mishra, R.3
  • 82
    • 84890550163 scopus 로고    scopus 로고
    • Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
    • COI: 1:CAS:528:DC%2BC3sXhvFOmtrrJ, PID: 24226773
    • Arpaia N, Campbell C, Fan X, et al. Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation. Nature. 2013;504:451–455.
    • (2013) Nature , vol.504 , pp. 451-455
    • Arpaia, N.1    Campbell, C.2    Fan, X.3
  • 83
    • 0020710588 scopus 로고
    • Dietary intake, energy metabolism, and excretory losses of adult male germfree Wistar rats
    • COI: 1:STN:280:DyaL3s7msFelsw%3D%3D, PID: 6834773
    • Wostmann BS, Larkin C, Moriarty A, Bruckner-Kardoss E. Dietary intake, energy metabolism, and excretory losses of adult male germfree Wistar rats. Lab Anim Sci. 1983;33:46–50.
    • (1983) Lab Anim Sci , vol.33 , pp. 46-50
    • Wostmann, B.S.1    Larkin, C.2    Moriarty, A.3    Bruckner-Kardoss, E.4
  • 84
    • 73949137604 scopus 로고    scopus 로고
    • Microbiota and SCFA in lean and overweight healthy subjects
    • Schwiertz A, Taras D, Schafer K, et al. Microbiota and SCFA in lean and overweight healthy subjects. Obesity (Silver Spring). 2010;18:190–195.
    • (2010) Obesity (Silver Spring) , vol.18 , pp. 190-195
    • Schwiertz, A.1    Taras, D.2    Schafer, K.3
  • 85
    • 84901327600 scopus 로고    scopus 로고
    • Identification of the porcine G protein-coupled receptor 41 and 43 genes and their expression pattern in different tissues and development stages
    • PID: 24840136
    • Li G, Su H, Zhou Z, Yao W. Identification of the porcine G protein-coupled receptor 41 and 43 genes and their expression pattern in different tissues and development stages. PLoS ONE. 2014;9:e97342.
    • (2014) PLoS ONE , vol.9
    • Li, G.1    Su, H.2    Zhou, Z.3    Yao, W.4
  • 86
    • 84938906986 scopus 로고    scopus 로고
    • Gut bacteria products prevent AKI induced by ischemia–reperfusion
    • COI: 1:CAS:528:DC%2BC2MXhvFWnu7%2FN, PID: 25589612
    • Andrade-Oliveira V, Amano MT, Correa-Costa M, et al. Gut bacteria products prevent AKI induced by ischemia–reperfusion. J Am Soc Nephrol. 2015;26:1877–1888.
    • (2015) J Am Soc Nephrol , vol.26 , pp. 1877-1888
    • Andrade-Oliveira, V.1    Amano, M.T.2    Correa-Costa, M.3
  • 87
    • 77956237892 scopus 로고    scopus 로고
    • Blockade of dendritic cell development by bacterial fermentation products butyrate and propionate through a transporter (Slc5a8)-dependent inhibition of histone deacetylases
    • COI: 1:CAS:528:DC%2BC3cXhtVOnsL7F, PID: 20601425
    • Singh N, Thangaraju M, Prasad PD, et al. Blockade of dendritic cell development by bacterial fermentation products butyrate and propionate through a transporter (Slc5a8)-dependent inhibition of histone deacetylases. J Biol Chem. 2010;285:27601–27608.
    • (2010) J Biol Chem , vol.285 , pp. 27601-27608
    • Singh, N.1    Thangaraju, M.2    Prasad, P.D.3
  • 88
    • 0038676409 scopus 로고    scopus 로고
    • Inhibition of histone deacetylase activity by butyrate
    • COI: 1:CAS:528:DC%2BD3sXmsFOltrs%3D, PID: 12840228
    • Davie JR. Inhibition of histone deacetylase activity by butyrate. J Nutr. 2003;133:2485S–2493S.
    • (2003) J Nutr , vol.133 , pp. 2485S-2493S
    • Davie, J.R.1
  • 89
    • 0018371969 scopus 로고
    • Different accessibilities in chromatin to histone acetylase
    • COI: 1:CAS:528:DyaE1MXhvVSru7o%3D, PID: 762168
    • Cousens LS, Gallwitz D, Alberts BM. Different accessibilities in chromatin to histone acetylase. J Biol Chem. 1979;254:1716–1723.
    • (1979) J Biol Chem , vol.254 , pp. 1716-1723
    • Cousens, L.S.1    Gallwitz, D.2    Alberts, B.M.3
  • 90
    • 0032729215 scopus 로고    scopus 로고
    • Apoptosis induced by the histone deacetylase inhibitor sodium butyrate in human leukemic lymphoblasts
    • COI: 1:CAS:528:DyaK1MXnt1GntbY%3D, PID: 10544182
    • Bernhard D, Ausserlechner MJ, Tonko M, et al. Apoptosis induced by the histone deacetylase inhibitor sodium butyrate in human leukemic lymphoblasts. FASEB J. 1999;13:1991–2001.
    • (1999) FASEB J , vol.13 , pp. 1991-2001
    • Bernhard, D.1    Ausserlechner, M.J.2    Tonko, M.3
  • 91
    • 0346690260 scopus 로고    scopus 로고
    • Butyrates, as a single drug, induce histone acetylation and granulocytic maturation: possible selectivity on core binding factor-acute myeloid leukemia blasts
    • COI: 1:CAS:528:DC%2BD3sXhtVSqtbnP, PID: 14695213
    • Gozzini A, Rovida E, Dello Sbarba P, Galimberti S, Santini V. Butyrates, as a single drug, induce histone acetylation and granulocytic maturation: possible selectivity on core binding factor-acute myeloid leukemia blasts. Cancer Res. 2003;63:8955–8961.
    • (2003) Cancer Res , vol.63 , pp. 8955-8961
    • Gozzini, A.1    Rovida, E.2    Dello Sbarba, P.3    Galimberti, S.4    Santini, V.5
  • 92
    • 0344951326 scopus 로고    scopus 로고
    • Phenylbutyrate inhibits growth of cervical carcinoma cells independent of HPV type and copy number
    • COI: 1:CAS:528:DC%2BD3sXisV2qtLY%3D, PID: 12669235
    • Finzer P, Stohr M, Seibert N, Rosl F. Phenylbutyrate inhibits growth of cervical carcinoma cells independent of HPV type and copy number. J Cancer Res Clin Oncol. 2003;129:107–113.
    • (2003) J Cancer Res Clin Oncol , vol.129 , pp. 107-113
    • Finzer, P.1    Stohr, M.2    Seibert, N.3    Rosl, F.4
  • 93
    • 1342323490 scopus 로고    scopus 로고
    • Sodium butyrate and tributyrin induce in vivo growth inhibition and apoptosis in human prostate cancer
    • COI: 1:CAS:528:DC%2BD2cXksl2msA%3D%3D, PID: 14735205
    • Kuefer R, Hofer MD, Altug V, et al. Sodium butyrate and tributyrin induce in vivo growth inhibition and apoptosis in human prostate cancer. Br J Cancer. 2004;90:535–541.
    • (2004) Br J Cancer , vol.90 , pp. 535-541
    • Kuefer, R.1    Hofer, M.D.2    Altug, V.3
  • 94
    • 1542577586 scopus 로고    scopus 로고
    • Induction of apoptosis in BCR/ABL + cells by histone deacetylase inhibitors involves reciprocal effects on the RAF/MEK/ERK and JNK pathways
    • COI: 1:CAS:528:DC%2BD2cXhtVOiurY%3D, PID: 14614324
    • Yu C, Subler M, Rahmani M, et al. Induction of apoptosis in BCR/ABL + cells by histone deacetylase inhibitors involves reciprocal effects on the RAF/MEK/ERK and JNK pathways. Cancer Biol Ther. 2003;2:544–551.
    • (2003) Cancer Biol Ther , vol.2 , pp. 544-551
    • Yu, C.1    Subler, M.2    Rahmani, M.3
  • 95
    • 84958543825 scopus 로고    scopus 로고
    • Butyrate production from high-fiber diet protects against lymphoma tumor
    • COI: 1:CAS:528:DC%2BC28Xjt1Ogt7c%3D, PID: 26885564
    • Wei W, Sun W, Yu S, Yang Y, Ai L. Butyrate production from high-fiber diet protects against lymphoma tumor. Leuk Lymphoma. 2016;57:2401–2408.
    • (2016) Leuk Lymphoma , vol.57 , pp. 2401-2408
    • Wei, W.1    Sun, W.2    Yu, S.3    Yang, Y.4    Ai, L.5
  • 96
    • 84893859801 scopus 로고    scopus 로고
    • The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition
    • COI: 1:CAS:528:DC%2BC2cXisFyisL4%3D, PID: 24390544
    • Chang PV, Hao L, Offermanns S, Medzhitov R. The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition. Proc Natl Acad Sci USA. 2014;111:2247–2252.
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. 2247-2252
    • Chang, P.V.1    Hao, L.2    Offermanns, S.3    Medzhitov, R.4
  • 97
    • 77957904417 scopus 로고    scopus 로고
    • Butyrate suppresses expression of neuropilin I in colorectal cell lines through inhibition of Sp1 transactivation
    • PID: 20950431
    • Yu DC, Waby JS, Chirakkal H, Staton CA, Corfe BM. Butyrate suppresses expression of neuropilin I in colorectal cell lines through inhibition of Sp1 transactivation. Mol Cancer. 2010;9:276.
    • (2010) Mol Cancer , vol.9 , pp. 276
    • Yu, D.C.1    Waby, J.S.2    Chirakkal, H.3    Staton, C.A.4    Corfe, B.M.5
  • 98
    • 84933566722 scopus 로고    scopus 로고
    • The role of butyrate, a histone deacetylase inhibitor in diabetes mellitus: experimental evidence for therapeutic intervention
    • COI: 1:CAS:528:DC%2BC2MXhtVKntLrN, PID: 26111036
    • Khan S, Jena G. The role of butyrate, a histone deacetylase inhibitor in diabetes mellitus: experimental evidence for therapeutic intervention. Epigenomics. 2015;7:669–680.
    • (2015) Epigenomics , vol.7 , pp. 669-680
    • Khan, S.1    Jena, G.2
  • 99
    • 77956137185 scopus 로고    scopus 로고
    • IkappaBbeta acts to inhibit and activate gene expression during the inflammatory response
    • COI: 1:CAS:528:DC%2BC3cXhtVOnurvK, PID: 20740013
    • Rao P, Hayden MS, Long M, et al. IkappaBbeta acts to inhibit and activate gene expression during the inflammatory response. Nature. 2010;466:1115–1119.
    • (2010) Nature , vol.466 , pp. 1115-1119
    • Rao, P.1    Hayden, M.S.2    Long, M.3
  • 100
    • 77954541844 scopus 로고    scopus 로고
    • Single-cell NF-kappaB dynamics reveal digital activation and analogue information processing
    • COI: 1:CAS:528:DC%2BC3cXnvFykt7w%3D, PID: 20581820
    • Tay S, Hughey JJ, Lee TK, Lipniacki T, Quake SR, Covert MW. Single-cell NF-kappaB dynamics reveal digital activation and analogue information processing. Nature. 2010;466:267–271.
    • (2010) Nature , vol.466 , pp. 267-271
    • Tay, S.1    Hughey, J.J.2    Lee, T.K.3    Lipniacki, T.4    Quake, S.R.5    Covert, M.W.6
  • 101
    • 85006957162 scopus 로고    scopus 로고
    • Artemisinin inhibits inflammatory response via regulating NF-kappaB and MAPK signaling pathways
    • COI: 1:CAS:528:DC%2BC28XitFOiurfO, PID: 28000518
    • Wang KS, Li J, Wang Z, et al. Artemisinin inhibits inflammatory response via regulating NF-kappaB and MAPK signaling pathways. Immunopharmacol Immunotoxicol. 2017;39:28–36.
    • (2017) Immunopharmacol Immunotoxicol , vol.39 , pp. 28-36
    • Wang, K.S.1    Li, J.2    Wang, Z.3
  • 102
    • 85012050807 scopus 로고    scopus 로고
    • IL-1beta impedes the chondrogenic differentiation of synovial fluid mesenchymal stem cells in the human temporomandibular joint
    • PID: 28000839
    • Liu W, Sun Y, He Y, et al. IL-1beta impedes the chondrogenic differentiation of synovial fluid mesenchymal stem cells in the human temporomandibular joint. Int J Mol Med. 2016;39:317–326.
    • (2016) Int J Mol Med , vol.39 , pp. 317-326
    • Liu, W.1    Sun, Y.2    He, Y.3
  • 103
    • 84999666605 scopus 로고    scopus 로고
    • Baicalin and geniposide inhibit the development of atherosclerosis by increasing Wnt1 and inhibiting dickkopf-related protein-1 expression
    • PID: 27928227
    • Wang B, Liao PP, Liu LH, Fang X, Li W, Guan SM. Baicalin and geniposide inhibit the development of atherosclerosis by increasing Wnt1 and inhibiting dickkopf-related protein-1 expression. J Geriatr Cardiol. 2016;13:846–854.
    • (2016) J Geriatr Cardiol , vol.13 , pp. 846-854
    • Wang, B.1    Liao, P.P.2    Liu, L.H.3    Fang, X.4    Li, W.5    Guan, S.M.6
  • 104
    • 84997282883 scopus 로고    scopus 로고
    • Tanshinone II A attenuates TNF-alpha-induced expression of VCAM-1 and ICAM-1 in endothelial progenitor cells by blocking activation of NF-kappaB
    • COI: 1:CAS:528:DC%2BC28XhvFGgs7nF, PID: 27855363
    • Yang JX, Pan YY, Ge JH, et al. Tanshinone II A attenuates TNF-alpha-induced expression of VCAM-1 and ICAM-1 in endothelial progenitor cells by blocking activation of NF-kappaB. Cell Physiol Biochem. 2016;40:195–206.
    • (2016) Cell Physiol Biochem , vol.40 , pp. 195-206
    • Yang, J.X.1    Pan, Y.Y.2    Ge, J.H.3
  • 105
    • 84994525198 scopus 로고    scopus 로고
    • Role of NF-kappaB activation and Th1/Th2 imbalance in pulmonary toxicity induced by nano NiO
    • PID: 27464988
    • Chang X, Zhu A, Liu F, et al. Role of NF-kappaB activation and Th1/Th2 imbalance in pulmonary toxicity induced by nano NiO. Environ Toxicol. 2016;32:1354–1362.
    • (2016) Environ Toxicol , vol.32 , pp. 1354-1362
    • Chang, X.1    Zhu, A.2    Liu, F.3
  • 106
    • 84964048371 scopus 로고    scopus 로고
    • Blocking sympathetic nervous system reverses partially stroke-induced immunosuppression but does not aggravate functional outcome after experimental stroke in rats
    • COI: 1:CAS:528:DC%2BC28Xlsl2ns7Y%3D, PID: 27059792
    • Deng QW, Yang H, Yan FL, et al. Blocking sympathetic nervous system reverses partially stroke-induced immunosuppression but does not aggravate functional outcome after experimental stroke in rats. Neurochem Res. 2016;41:1877–1886.
    • (2016) Neurochem Res , vol.41 , pp. 1877-1886
    • Deng, Q.W.1    Yang, H.2    Yan, F.L.3
  • 107
    • 84885176242 scopus 로고    scopus 로고
    • Sodium butyrate inhibits interferon-gamma induced indoleamine 2,3-dioxygenase expression via STAT1 in nasopharyngeal carcinoma cells
    • COI: 1:CAS:528:DC%2BC3sXhsVWis7zP, PID: 23942267
    • He YW, Wang HS, Zeng J, et al. Sodium butyrate inhibits interferon-gamma induced indoleamine 2,3-dioxygenase expression via STAT1 in nasopharyngeal carcinoma cells. Life Sci. 2013;93:509–515.
    • (2013) Life Sci , vol.93 , pp. 509-515
    • He, Y.W.1    Wang, H.S.2    Zeng, J.3
  • 108
    • 33645225429 scopus 로고    scopus 로고
    • Regulation of nuclear translocation of HDAC3 by IkappaBalpha is required for tumor necrosis factor inhibition of peroxisome proliferator-activated receptor gamma function
    • COI: 1:CAS:528:DC%2BD28XhtlKrs78%3D, PID: 16371367
    • Gao Z, He Q, Peng B, Chiao PJ, Ye J. Regulation of nuclear translocation of HDAC3 by IkappaBalpha is required for tumor necrosis factor inhibition of peroxisome proliferator-activated receptor gamma function. J Biol Chem. 2006;281:4540–4547.
    • (2006) J Biol Chem , vol.281 , pp. 4540-4547
    • Gao, Z.1    He, Q.2    Peng, B.3    Chiao, P.J.4    Ye, J.5
  • 109
    • 10744224946 scopus 로고    scopus 로고
    • Expression of LL-37 by human gastric epithelial cells as a potential host defense mechanism against Helicobacter pylori
    • COI: 1:CAS:528:DC%2BD2cXhtVOrsQ%3D%3D, PID: 14724813
    • Hase K, Murakami M, Iimura M, et al. Expression of LL-37 by human gastric epithelial cells as a potential host defense mechanism against Helicobacter pylori. Gastroenterology. 2003;125:1613–1625.
    • (2003) Gastroenterology , vol.125 , pp. 1613-1625
    • Hase, K.1    Murakami, M.2    Iimura, M.3
  • 110
    • 0038523850 scopus 로고    scopus 로고
    • Expression of the cathelicidin LL-37 is modulated by short chain fatty acids in colonocytes: relevance of signalling pathways
    • COI: 1:CAS:528:DC%2BD3sXjvVehsr4%3D, PID: 12692061
    • Schauber J, Svanholm C, Termen S, et al. Expression of the cathelicidin LL-37 is modulated by short chain fatty acids in colonocytes: relevance of signalling pathways. Gut. 2003;52:735–741.
    • (2003) Gut , vol.52 , pp. 735-741
    • Schauber, J.1    Svanholm, C.2    Termen, S.3
  • 112
    • 65449122736 scopus 로고    scopus 로고
    • Reactivation of latent HIV-1 infection by the periodontopathic bacterium Porphyromonas gingivalis involves histone modification
    • COI: 1:CAS:528:DC%2BD1MXis12hsr8%3D, PID: 19265147
    • Imai K, Ochiai K, Okamoto T. Reactivation of latent HIV-1 infection by the periodontopathic bacterium Porphyromonas gingivalis involves histone modification. J Immunol. 2009;182:3688–3695.
    • (2009) J Immunol , vol.182 , pp. 3688-3695
    • Imai, K.1    Ochiai, K.2    Okamoto, T.3
  • 113
    • 0037592269 scopus 로고    scopus 로고
    • Transforming growth factor-beta 1 inhibits non-pathogenic Gram negative bacteria-induced NF-kappa B recruitment to the interleukin-6 gene promoter in intestinal epithelial cells through modulation of histone acetylation
    • COI: 1:CAS:528:DC%2BD3sXkslygur4%3D, PID: 12672795
    • Haller D, Holt L, Kim SC, Schwabe RF, Sartor RB, Jobin C. Transforming growth factor-beta 1 inhibits non-pathogenic Gram negative bacteria-induced NF-kappa B recruitment to the interleukin-6 gene promoter in intestinal epithelial cells through modulation of histone acetylation. J Biol Chem. 2003;278:23851–23860.
    • (2003) J Biol Chem , vol.278 , pp. 23851-23860
    • Haller, D.1    Holt, L.2    Kim, S.C.3    Schwabe, R.F.4    Sartor, R.B.5    Jobin, C.6
  • 114
    • 84868136017 scopus 로고    scopus 로고
    • Epigenetic imprinting by commensal probiotics inhibits the IL-23/IL-17 axis in an in vitro model of the intestinal mucosal immune system
    • COI: 1:CAS:528:DC%2BC38XhsFSmtrjJ, PID: 22730546
    • Ghadimi D, Helwig U, Schrezenmeir J, Heller KJ, de Vrese M. Epigenetic imprinting by commensal probiotics inhibits the IL-23/IL-17 axis in an in vitro model of the intestinal mucosal immune system. J Leukoc Biol. 2012;92:895–911.
    • (2012) J Leukoc Biol , vol.92 , pp. 895-911
    • Ghadimi, D.1    Helwig, U.2    Schrezenmeir, J.3    Heller, K.J.4    de Vrese, M.5
  • 115
    • 23844549198 scopus 로고    scopus 로고
    • Intracellular bacteria differentially regulated endothelial cytokine release by MAPK-dependent histone modification
    • COI: 1:CAS:528:DC%2BD2MXos1Gisb8%3D, PID: 16116170
    • Schmeck B, Beermann W, van Laak V, et al. Intracellular bacteria differentially regulated endothelial cytokine release by MAPK-dependent histone modification. J Immunol. 2005;175:2843–2850.
    • (2005) J Immunol , vol.175 , pp. 2843-2850
    • Schmeck, B.1    Beermann, W.2    van Laak, V.3
  • 116
    • 29644434743 scopus 로고    scopus 로고
    • Listeria monocytogenes activated p38 MAPK and induced IL-8 secretion in a nucleotide-binding oligomerization domain 1-dependent manner in endothelial cells
    • COI: 1:CAS:528:DC%2BD2MXhtlagtLzE, PID: 16365441
    • Opitz B, Puschel A, Beermann W, et al. Listeria monocytogenes activated p38 MAPK and induced IL-8 secretion in a nucleotide-binding oligomerization domain 1-dependent manner in endothelial cells. J Immunol. 2006;176:484–490.
    • (2006) J Immunol , vol.176 , pp. 484-490
    • Opitz, B.1    Puschel, A.2    Beermann, W.3
  • 117
    • 79959431647 scopus 로고    scopus 로고
    • + efflux is required for histone H3 dephosphorylation by Listeria monocytogenes listeriolysin O and other pore-forming toxins
    • COI: 1:CAS:528:DC%2BC3MXot1Kisr8%3D, PID: 21482680
    • + efflux is required for histone H3 dephosphorylation by Listeria monocytogenes listeriolysin O and other pore-forming toxins. Infect Immun. 2011;79:2839–2846.
    • (2011) Infect Immun , vol.79 , pp. 2839-2846
    • Hamon, M.A.1    Cossart, P.2
  • 118
    • 40849139138 scopus 로고    scopus 로고
    • Helicobacter pylori regulates p21(WAF1) by histone H4 acetylation
    • COI: 1:CAS:528:DC%2BD1cXjs12gtbc%3D, PID: 18302936
    • Xia G, Schneider-Stock R, Diestel A, et al. Helicobacter pylori regulates p21(WAF1) by histone H4 acetylation. Biochem Biophys Res Commun. 2008;369:526–531.
    • (2008) Biochem Biophys Res Commun , vol.369 , pp. 526-531
    • Xia, G.1    Schneider-Stock, R.2    Diestel, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.