-
1
-
-
0036733675
-
Chromatin modification and epigenetic reprogramming in mammalian development
-
Li, E. Chromatin modification and epigenetic reprogramming in mammalian development. Nat. Rev. Genet. 3, 662-673 (2002).
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 662-673
-
-
Li, E.1
-
2
-
-
84866061061
-
Mechanisms of histone H3 lysine 27 trimethylation remodeling during early mammalian development
-
Bogliotti, Y. S. and Ross, P. J. Mechanisms of histone H3 lysine 27 trimethylation remodeling during early mammalian development. Epigenetics 7, 976-981 (2012).
-
(2012)
Epigenetics
, vol.7
, pp. 976-981
-
-
Bogliotti, Y.S.1
Ross, P.J.2
-
3
-
-
84953635706
-
An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations
-
BrindAmour, J. et al. An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations. Nat. Commun. 6, 6033 (2015).
-
(2015)
Nat. Commun.
, vol.6
, pp. 6033
-
-
BrindAmour, J.1
-
4
-
-
33847084602
-
Genome regulation by polycomb and trithorax proteins
-
Schuettengruber, B., Chourrout, D., Vervoort, M., Leblanc, B. and Cavalli, G. Genome regulation by polycomb and trithorax proteins. Cell 128, 735-745 (2007).
-
(2007)
Cell
, vol.128
, pp. 735-745
-
-
Schuettengruber, B.1
Chourrout, D.2
Vervoort, M.3
Leblanc, B.4
Cavalli, G.5
-
5
-
-
8844265508
-
Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins
-
Ringrose, L. and Paro, R. Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins. Annu. Rev. Genet. 38, 413-443 (2004).
-
(2004)
Annu. Rev. Genet.
, vol.38
, pp. 413-443
-
-
Ringrose, L.1
Paro, R.2
-
6
-
-
0042310137
-
Consequences of the depletion of zygotic and embryonic enhancer of zeste 2 during preimplantation mouse development
-
Erhardt, S. et al. Consequences of the depletion of zygotic and embryonic enhancer of zeste 2 during preimplantation mouse development. Development 130, 4235-4248 (2003).
-
(2003)
Development
, vol.130
, pp. 4235-4248
-
-
Erhardt, S.1
-
7
-
-
23144456323
-
Asymmetry in histone H3 variants and lysine methylation between paternal and maternal chromatin of the early mouse zygote
-
van der Heijden, G. W. et al. Asymmetry in histone H3 variants and lysine methylation between paternal and maternal chromatin of the early mouse zygote. Mech. Dev. 122, 1008-1022 (2005).
-
(2005)
Mech. Dev.
, vol.122
, pp. 1008-1022
-
-
Van Der Heijden, G.W.1
-
8
-
-
69949148306
-
Defective chromatin structure in somatic cell cloned mouse embryos
-
Zhang, M., Wang, F., Kou, Z., Zhang, Y. and Gao, S. Defective chromatin structure in somatic cell cloned mouse embryos. J. Biol. Chem. 284, 24981-24987 (2009).
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 24981-24987
-
-
Zhang, M.1
Wang, F.2
Kou, Z.3
Zhang, Y.4
Gao, S.5
-
9
-
-
33644848689
-
Roadmap to embryo implantation: Clues from mouse models
-
Wang, H. and Dey, S. K. Roadmap to embryo implantation: clues from mouse models. Nat. Rev. Genet. 7, 185-199 (2006).
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 185-199
-
-
Wang, H.1
Dey, S.K.2
-
10
-
-
84897655065
-
High-throughput sequencing reveals the disruption of methylation of imprinted gene in induced pluripotent stem cells
-
Chang, G. et al. High-throughput sequencing reveals the disruption of methylation of imprinted gene in induced pluripotent stem cells. Cell Res. 24, 293-306 (2014).
-
(2014)
Cell Res.
, vol.24
, pp. 293-306
-
-
Chang, G.1
-
11
-
-
66749180667
-
Epigenetic temporal control of mouse Hox genes in vivo
-
Soshnikova, N. and Duboule, D. Epigenetic temporal control of mouse Hox genes in vivo. Science 324, 1320-1323 (2009).
-
(2009)
Science
, vol.324
, pp. 1320-1323
-
-
Soshnikova, N.1
Duboule, D.2
-
12
-
-
84857707318
-
ChromHMM: Automating chromatin-state discovery and characterization
-
Ernst, J. and Kellis, M. ChromHMM: automating chromatin-state discovery and characterization. Nat. Methods 9, 215-216 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 215-216
-
-
Ernst, J.1
Kellis, M.2
-
13
-
-
0242668706
-
Role of histone H3 lysine 27 methylation in X inactivation
-
Plath, K. et al. Role of histone H3 lysine 27 methylation in X inactivation. Science 300, 131-135 (2003).
-
(2003)
Science
, vol.300
, pp. 131-135
-
-
Plath, K.1
-
14
-
-
0037172659
-
Mitotically stable association of polycomb group proteins Eed and Enx1 with the inactive X chromosome in trophoblast stem cells
-
Mak, W. et al. Mitotically stable association of polycomb group proteins Eed and Enx1 with the inactive X chromosome in trophoblast stem cells. Curr. Biol. 12, 1016-1020 (2002).
-
(2002)
Curr. Biol.
, vol.12
, pp. 1016-1020
-
-
Mak, W.1
-
15
-
-
77951116072
-
CpG islands influence chromatin structure via the CpG-binding protein Cfp1
-
Thomson, J. P. et al. CpG islands influence chromatin structure via the CpG-binding protein Cfp1. Nature 464, 1082-1086 (2010).
-
(2010)
Nature
, vol.464
, pp. 1082-1086
-
-
Thomson, J.P.1
-
16
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen, T. S. et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448, 553-560 (2007).
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
-
17
-
-
0028104109
-
Sp1 elements protect a CpG island from de novo methylation
-
Brandeis, M. et al. Sp1 elements protect a CpG island from de novo methylation. Nature 371, 435-438 (1994).
-
(1994)
Nature
, vol.371
, pp. 435-438
-
-
Brandeis, M.1
-
18
-
-
0038243168
-
The role of DNA methylation in setting up chromatin structure during development
-
Hashimshony, T., Zhang, J., Keshet, I., Bustin, M. and Cedar, H. The role of DNA methylation in setting up chromatin structure during development. Nat. Genet. 34, 187-192 (2003).
-
(2003)
Nat. Genet.
, vol.34
, pp. 187-192
-
-
Hashimshony, T.1
Zhang, J.2
Keshet, I.3
Bustin, M.4
Cedar, H.5
-
19
-
-
34249692514
-
Role of DNA methylation in stable gene repression
-
Lande-Diner, L. et al. Role of DNA methylation in stable gene repression. J. Biol. Chem. 282, 12194-12200 (2007).
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 12194-12200
-
-
Lande-Diner, L.1
-
20
-
-
84900300766
-
Programming and inheritance of parental DNA methylomes in mammals
-
Wang, L. et al. Programming and inheritance of parental DNA methylomes in mammals. Cell 157, 1735-1735 (2014).
-
(2014)
Cell
, vol.157
, pp. 1735
-
-
Wang, L.1
-
21
-
-
84905392053
-
H3K4me3 breadth is linked to cell identity and transcriptional consistency
-
Benayoun, B. A. et al. H3K4me3 breadth is linked to cell identity and transcriptional consistency. Cell 158, 673-688 (2014).
-
(2014)
Cell
, vol.158
, pp. 673-688
-
-
Benayoun, B.A.1
-
22
-
-
84942984698
-
Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes
-
Chen, K. et al. Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes. Nat. Genet. 47, 1149-1157 (2015).
-
(2015)
Nat. Genet.
, vol.47
, pp. 1149-1157
-
-
Chen, K.1
-
23
-
-
84859893371
-
Histone methylation: A dynamic mark in health, disease and inheritance
-
Greer, E. L. and Shi, Y. Histone methylation: a dynamic mark in health, disease and inheritance. Nat. Rev. Genet. 13, 343-357 (2012).
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 343-357
-
-
Greer, E.L.1
Shi, Y.2
-
24
-
-
84928323123
-
Impairment of preimplantation porcine embryo development by histone demethylase KDM5B knockdown through disturbance of bivalent H3K4me3-H3K27me3 modifications
-
Huang, J. et al. Impairment of preimplantation porcine embryo development by histone demethylase KDM5B knockdown through disturbance of bivalent H3K4me3-H3K27me3 modifications. Biol. Reprod. 92, 72 (2015).
-
(2015)
Biol. Reprod.
, vol.92
, pp. 72
-
-
Huang, J.1
-
25
-
-
33646872978
-
Chromatin signatures of pluripotent cell lines
-
Azuara, V. et al. Chromatin signatures of pluripotent cell lines. Nat. Cell Biol. 8, 532-538 (2006).
-
(2006)
Nat. Cell Biol.
, vol.8
, pp. 532-538
-
-
Azuara, V.1
-
26
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B. E. et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125, 315-326 (2006).
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
-
27
-
-
77950866717
-
Chromatin signature of embryonic pluripotency is established during genome activation
-
Vastenhouw, N. L. et al. Chromatin signature of embryonic pluripotency is established during genome activation. Nature 464, 922-926 (2010).
-
(2010)
Nature
, vol.464
, pp. 922-926
-
-
Vastenhouw, N.L.1
-
28
-
-
84879794372
-
Bivalent chromatin marks developmental regulatory genes in the mouse embryonic germline in vivo
-
Sachs, M. et al. Bivalent chromatin marks developmental regulatory genes in the mouse embryonic germline in vivo. Cell Reports 3, 1777-1784 (2013).
-
(2013)
Cell Reports
, vol.3
, pp. 1777-1784
-
-
Sachs, M.1
-
29
-
-
84927626047
-
Establishing pluripotency in early development
-
Paranjpe, S. S. and Veenstra, G. J. Establishing pluripotency in early development. Biochim. Biophys. Acta 1849, 626-636 (2015).
-
(2015)
Biochim. Biophys. Acta
, vol.1849
, pp. 626-636
-
-
Paranjpe, S.S.1
Veenstra, G.J.2
-
30
-
-
84942983931
-
Absence of canonical marks of active chromatin in developmentally regulated genes
-
Perez-Lluch, S. et al. Absence of canonical marks of active chromatin in developmentally regulated genes. Nat. Genet. 47, 1158-1167 (2015).
-
(2015)
Nat. Genet.
, vol.47
, pp. 1158-1167
-
-
Perez-Lluch, S.1
-
31
-
-
0028926862
-
Intracytoplasmic sperm injection in the mouse
-
Kimura, Y. and Yanagimachi, R. Intracytoplasmic sperm injection in the mouse. Biol. Reprod. 52, 709-720 (1995).
-
(1995)
Biol. Reprod.
, vol.52
, pp. 709-720
-
-
Kimura, Y.1
Yanagimachi, R.2
-
32
-
-
0024407119
-
An improved culture medium supports development of random-bred 1-cell mouse embryos in vitro
-
Chatot, C. L., Ziomek, C. A., Bavister, B. D., Lewis, J. L. and Torres, I. An improved culture medium supports development of random-bred 1-cell mouse embryos in vitro. J. Reprod. Fertil. 86, 679-688 (1989).
-
(1989)
J. Reprod. Fertil.
, vol.86
, pp. 679-688
-
-
Chatot, C.L.1
Ziomek, C.A.2
Bavister, B.D.3
Lewis, J.L.4
Torres, I.5
-
33
-
-
67649884743
-
Fast and accurate short read alignment with Burrows- Wheeler transform
-
Li, H. and Durbin, R. Fast and accurate short read alignment with Burrows- Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
34
-
-
53849146020
-
Model-based analysis of ChIP-seq (MACS)
-
Zhang, Y. et al. Model-based analysis of ChIP-seq (MACS). Genome Biol. 9, R137 (2008).
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
-
35
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. and Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
36
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
37
-
-
68949141599
-
BSMAP: Whole genome bisulfite sequence MAPping program
-
Xi, Y. and Li, W. BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinformatics 10, 232 (2009).
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 232
-
-
Xi, Y.1
Li, W.2
-
38
-
-
84899049695
-
MOABS: Model based analysis of bisulfite sequencing data
-
Sun, D. et al. MOABS: model based analysis of bisulfite sequencing data. Genome Biol. 15, R38 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. R38
-
-
Sun, D.1
-
39
-
-
34047116826
-
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
-
Weber, M. et al. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat. Genet. 39, 457-466 (2007).
-
(2007)
Nat. Genet.
, vol.39
, pp. 457-466
-
-
Weber, M.1
-
40
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, W., Sherman, B. T. and Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protocols 4, 44-57 (2009).
-
(2009)
Nat. Protocols
, vol.4
, pp. 44-57
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
41
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen, Y. et al. A map of the cis-regulatory sequences in the mouse genome. Nature 488, 116-120 (2012).
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
-
42
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili, M. N. et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25, 1915-1927 (2011).
-
(2011)
Genes Dev.
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
-
43
-
-
84874271270
-
NCBI GEO: Archive for functional genomics data sets-update
-
Barrett, T. et al. NCBI GEO: archive for functional genomics data sets-update. Nucleic Acids Res. 41, D991-D995 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D991-D995
-
-
Barrett, T.1
-
44
-
-
84989207582
-
Identification of key factors conquering developmental arrest of somatic cell cloned embryos by combining embryo biopsy and single-cell sequencing
-
Liu, W. et al. Identification of key factors conquering developmental arrest of somatic cell cloned embryos by combining embryo biopsy and single-cell sequencing. Cell Discovery 2, 16010 (2016).
-
(2016)
Cell Discovery
, vol.2
, pp. 16010
-
-
Liu, W.1
|