-
1
-
-
84874479799
-
Animals in a bacterial world, a new imperative for the life sciences
-
McFall-Ngai M, Hadfield MG, Bosch TC, Carey HV, Domazet-Loso T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, et al. Animals in a bacterial world, a new imperative for the life sciences. Proc Natl Acad Sci U S A. 2013;110(9):3229-36.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, Issue.9
, pp. 3229-3236
-
-
McFall-Ngai, M.1
Hadfield, M.G.2
Bosch, T.C.3
Carey, H.V.4
Domazet-Loso, T.5
Douglas, A.E.6
Dubilier, N.7
Eberl, G.8
Fukami, T.9
Gilbert, S.F.10
-
2
-
-
84965013978
-
Cross-species comparisons of host genetic associations with the microbiome
-
Goodrich JK, Davenport ER, Waters JL, Clark AG, Ley RE. Cross-species comparisons of host genetic associations with the microbiome. Science. 2016;352(6285):532-5.
-
(2016)
Science
, vol.352
, Issue.6285
, pp. 532-535
-
-
Goodrich, J.K.1
Davenport, E.R.2
Waters, J.L.3
Clark, A.G.4
Ley, R.E.5
-
3
-
-
84925293456
-
Epigenomic regulation of host-microbiota interactions
-
Alenghat T, Artis D. Epigenomic regulation of host-microbiota interactions. Trends Immunol. 2014;35(11):518-25.
-
(2014)
Trends Immunol
, vol.35
, Issue.11
, pp. 518-525
-
-
Alenghat, T.1
Artis, D.2
-
4
-
-
84903939893
-
Microbiota-induced changes in drosophila melanogaster host gene expression and gut morphology
-
e01117-01114.
-
Broderick NA, Buchon N, Lemaitre B. Microbiota-induced changes in drosophila melanogaster host gene expression and gut morphology. MBio. 2014;5(3):e01117-01114.
-
(2014)
MBio
, vol.5
, Issue.3
-
-
Broderick, N.A.1
Buchon, N.2
Lemaitre, B.3
-
5
-
-
84938612863
-
Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease
-
Morgan XC, Kabakchiev B, Waldron L, Tyler AD, Tickle TL, Milgrom R, Stempak JM, Gevers D, Xavier RJ, Silverberg MS, et al. Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease. Genome Biol. 2015;16:67.
-
(2015)
Genome Biol
, vol.16
, pp. 67
-
-
Morgan, X.C.1
Kabakchiev, B.2
Waldron, L.3
Tyler, A.D.4
Tickle, T.L.5
Milgrom, R.6
Stempak, J.M.7
Gevers, D.8
Xavier, R.J.9
Silverberg, M.S.10
-
6
-
-
84890546613
-
Systems genetics approaches to understand complex traits
-
Civelek M, Lusis AJ. Systems genetics approaches to understand complex traits. Nat Rev Genet. 2014;15(1):34-48.
-
(2014)
Nat Rev Genet
, vol.15
, Issue.1
, pp. 34-48
-
-
Civelek, M.1
Lusis, A.J.2
-
7
-
-
23944458138
-
A general framework for weighted gene coexpression network analysis
-
Article17.
-
Zhang B, Horvath S. A general framework for weighted gene coexpression network analysis. Stat Appl Genet Mol Biol. 2005;4:Article17.
-
(2005)
Stat Appl Genet Mol Biol
, vol.4
-
-
Zhang, B.1
Horvath, S.2
-
8
-
-
54949113578
-
Functional organization of the transcriptome in human brain
-
Oldham MC, Konopka G, Iwamoto K, Langfelder P, Kato T, Horvath S, Geschwind DH. Functional organization of the transcriptome in human brain. Nat Neurosci. 2008;11(11):1271-82.
-
(2008)
Nat Neurosci
, vol.11
, Issue.11
, pp. 1271-1282
-
-
Oldham, M.C.1
Konopka, G.2
Iwamoto, K.3
Langfelder, P.4
Kato, T.5
Horvath, S.6
Geschwind, D.H.7
-
9
-
-
85020324656
-
Gene networks in the wild: identifying transcriptional modules that mediate coral resistance to experimental heat stress
-
Rose NH, Seneca FO, Palumbi SR. Gene networks in the wild: identifying transcriptional modules that mediate coral resistance to experimental heat stress. Genome Biol Evol. 2016;8(1):243-52.
-
(2016)
Genome Biol Evol
, vol.8
, Issue.1
, pp. 243-252
-
-
Rose, N.H.1
Seneca, F.O.2
Palumbi, S.R.3
-
10
-
-
84962141674
-
Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants
-
Morandin C, Tin MM, Abril S, Gomez C, Pontieri L, Schiott M, Sundstrom L, Tsuji K, Pedersen JS, Helantera H, et al. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Genome Biol. 2016;17:43.
-
(2016)
Genome Biol
, vol.17
, pp. 43
-
-
Morandin, C.1
Tin, M.M.2
Abril, S.3
Gomez, C.4
Pontieri, L.5
Schiott, M.6
Sundstrom, L.7
Tsuji, K.8
Pedersen, J.S.9
Helantera, H.10
-
11
-
-
84863870218
-
Gut-associated microbes of Drosophila melanogaster
-
Broderick NA, Lemaitre B. Gut-associated microbes of Drosophila melanogaster. Gut Microbes. 2012;3(4):307-21.
-
(2012)
Gut Microbes
, vol.3
, Issue.4
, pp. 307-321
-
-
Broderick, N.A.1
Lemaitre, B.2
-
12
-
-
84892453228
-
Interspecies interactions determine the impact of the gut microbiota on nutrient allocation in Drosophila melanogaster
-
Newell PD, Douglas AE. Interspecies interactions determine the impact of the gut microbiota on nutrient allocation in Drosophila melanogaster. Appl Environ Microbiol. 2014;80(2):788-96.
-
(2014)
Appl Environ Microbiol
, vol.80
, Issue.2
, pp. 788-796
-
-
Newell, P.D.1
Douglas, A.E.2
-
13
-
-
84906823319
-
Gut microbiota dictates the metabolic response of Drosophila to diet
-
Wong AC, Dobson AJ, Douglas AE. Gut microbiota dictates the metabolic response of Drosophila to diet. J Exp Biol. 2014;217(Pt 11):1894-901.
-
(2014)
J Exp Biol
, vol.217
, pp. 1894-1901
-
-
Wong, A.C.1
Dobson, A.J.2
Douglas, A.E.3
-
14
-
-
84872580074
-
Host-intestinal microbiota mutualism: "learning on the fly"
-
Erkosar B, Storelli G, Defaye A, Leulier F. Host-intestinal microbiota mutualism: "learning on the fly". Cell Host Microbe. 2013;13(1):8-14.
-
(2013)
Cell Host Microbe
, vol.13
, Issue.1
, pp. 8-14
-
-
Erkosar, B.1
Storelli, G.2
Defaye, A.3
Leulier, F.4
-
15
-
-
84929012632
-
Global diversity lines - a five-continent reference panel of sequenced Drosophila melanogaster strains
-
Grenier JK, Arguello JR, Moreira MC, Gottipati S, Mohammed J, Hackett SR, Boughton R, Greenberg AJ, Clark AG. Global diversity lines - a five-continent reference panel of sequenced Drosophila melanogaster strains. G3 (Bethesda). 2015;5(4):593-603.
-
(2015)
G3 (Bethesda)
, vol.5
, Issue.4
, pp. 593-603
-
-
Grenier, J.K.1
Arguello, J.R.2
Moreira, M.C.3
Gottipati, S.4
Mohammed, J.5
Hackett, S.R.6
Boughton, R.7
Greenberg, A.J.8
Clark, A.G.9
-
16
-
-
84904258306
-
Natural variation in genome architecture among 205 drosophila melanogaster genetic reference panel lines
-
Huang W, Massouras A, Inoue Y, Peiffer J, Ramia M, Tarone AM, Turlapati L, Zichner T, Zhu D, Lyman RF, et al. Natural variation in genome architecture among 205 drosophila melanogaster genetic reference panel lines. Genome Res. 2014;24(7):1193-208.
-
(2014)
Genome Res
, vol.24
, Issue.7
, pp. 1193-1208
-
-
Huang, W.1
Massouras, A.2
Inoue, Y.3
Peiffer, J.4
Ramia, M.5
Tarone, A.M.6
Turlapati, L.7
Zichner, T.8
Zhu, D.9
Lyman, R.F.10
-
17
-
-
84899632648
-
Drosophila microbiota modulates host metabolic gene expression via IMD/NF-kappaB signaling
-
Erkosar B, Defaye A, Bozonnet N, Puthier D, Royet J, Leulier F. Drosophila microbiota modulates host metabolic gene expression via IMD/NF-kappaB signaling. PLoS One. 2014;9(4):e94729.
-
(2014)
PLoS One
, vol.9
, Issue.4
-
-
Erkosar, B.1
Defaye, A.2
Bozonnet, N.3
Puthier, D.4
Royet, J.5
Leulier, F.6
-
18
-
-
84892714390
-
PGRP-SC2 promotes gut immune homeostasis to limit commensal dysbiosis and extend lifespan
-
Guo L, Karpac J, Tran SL, Jasper H. PGRP-SC2 promotes gut immune homeostasis to limit commensal dysbiosis and extend lifespan. Cell. 2014;156(1-2):109-22.
-
(2014)
Cell
, vol.156
, Issue.1-2
, pp. 109-122
-
-
Guo, L.1
Karpac, J.2
Tran, S.L.3
Jasper, H.4
-
19
-
-
84884675234
-
The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis
-
Wong AC, Chaston JM, Douglas AE. The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis. ISME J. 2013;7(10):1922-32.
-
(2013)
ISME J
, vol.7
, Issue.10
, pp. 1922-1932
-
-
Wong, A.C.1
Chaston, J.M.2
Douglas, A.E.3
-
20
-
-
84953862664
-
Host genetic control of the microbiota mediates Drosophila nutritional phenotype
-
Chaston JM, Dobson AJ, Newell PD, Douglas AE. Host genetic control of the microbiota mediates Drosophila nutritional phenotype. Appl Environ Microbiol. 2015;82(2):671-9.
-
(2015)
Appl Environ Microbiol
, vol.82
, Issue.2
, pp. 671-679
-
-
Chaston, J.M.1
Dobson, A.J.2
Newell, P.D.3
Douglas, A.E.4
-
21
-
-
77957319820
-
DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules
-
Tesson BM, Breitling R, Jansen RC. DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules. BMC Bioinformatics. 2010;11:497.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 497
-
-
Tesson, B.M.1
Breitling, R.2
Jansen, R.C.3
-
22
-
-
80555143077
-
Drosophila microbiome modulates host developmental and metabolic homeostasis via insulin signaling
-
Shin SC, Kim SH, You H, Kim B, Kim AC, Lee KA, Yoon JH, Ryu JH, Lee WJ. Drosophila microbiome modulates host developmental and metabolic homeostasis via insulin signaling. Science. 2011;334(6056):670-4.
-
(2011)
Science
, vol.334
, Issue.6056
, pp. 670-674
-
-
Shin, S.C.1
Kim, S.H.2
You, H.3
Kim, B.4
Kim, A.C.5
Lee, K.A.6
Yoon, J.H.7
Ryu, J.H.8
Lee, W.J.9
-
23
-
-
80052774197
-
Lactobacillus plantarum promotes Drosophila systemic growth by modulating hormonal signals through TOR-dependent nutrient sensing
-
Storelli G, Defaye A, Erkosar B, Hols P, Royet J, Leulier F. Lactobacillus plantarum promotes Drosophila systemic growth by modulating hormonal signals through TOR-dependent nutrient sensing. Cell Metab. 2011;14(3):403-14.
-
(2011)
Cell Metab
, vol.14
, Issue.3
, pp. 403-414
-
-
Storelli, G.1
Defaye, A.2
Erkosar, B.3
Hols, P.4
Royet, J.5
Leulier, F.6
-
24
-
-
84946594532
-
Consumption of dietary sugar by gut bacteria determines Drosophila lipid content
-
Huang JH, Douglas AE. Consumption of dietary sugar by gut bacteria determines Drosophila lipid content. Biol Lett. 2015;11(9):20150469.
-
(2015)
Biol Lett
, vol.11
, Issue.9
, pp. 20150469
-
-
Huang, J.H.1
Douglas, A.E.2
-
25
-
-
34249284197
-
Use of axenic animals in studying the adaptation of mammals to their commensal intestinal microbiota
-
Smith K, McCoy KD, Macpherson AJ. Use of axenic animals in studying the adaptation of mammals to their commensal intestinal microbiota. Semin Immunol. 2007;19(2):59-69.
-
(2007)
Semin Immunol
, vol.19
, Issue.2
, pp. 59-69
-
-
Smith, K.1
McCoy, K.D.2
Macpherson, A.J.3
-
26
-
-
84920576493
-
In vivo function and comparative genomic analyses of the Drosophila gut microbiota identify candidate symbiosis factors
-
Newell PD, Chaston JM, Wang Y, Winans NJ, Sannino DR, Wong AC, Dobson AJ, Kagle J, Douglas AE. In vivo function and comparative genomic analyses of the Drosophila gut microbiota identify candidate symbiosis factors. Front Microbiol. 2014;5:576.
-
(2014)
Front Microbiol
, vol.5
, pp. 576
-
-
Newell, P.D.1
Chaston, J.M.2
Wang, Y.3
Winans, N.J.4
Sannino, D.R.5
Wong, A.C.6
Dobson, A.J.7
Kagle, J.8
Douglas, A.E.9
-
27
-
-
84923103674
-
Microbes promote amino acid harvest to rescue undernutrition in Drosophila
-
Yamada R, Deshpande SA, Bruce KD, Mak EM, Ja WW. Microbes promote amino acid harvest to rescue undernutrition in Drosophila. Cell Rep. 2015;10(6):865-72.
-
(2015)
Cell Rep
, vol.10
, Issue.6
, pp. 865-872
-
-
Yamada, R.1
Deshpande, S.A.2
Bruce, K.D.3
Mak, E.M.4
Ja, W.W.5
-
28
-
-
84894614543
-
A holidic medium for Drosophila melanogaster
-
Piper MD, Blanc E, Leitao-Goncalves R, Yang M, He X, Linford NJ, Hoddinott MP, Hopfen C, Soultoukis GA, Niemeyer C, et al. A holidic medium for Drosophila melanogaster. Nat Methods. 2014;11(1):100-5.
-
(2014)
Nat Methods
, vol.11
, Issue.1
, pp. 100-105
-
-
Piper, M.D.1
Blanc, E.2
Leitao-Goncalves, R.3
Yang, M.4
He, X.5
Linford, N.J.6
Hoddinott, M.P.7
Hopfen, C.8
Soultoukis, G.A.9
Niemeyer, C.10
-
29
-
-
84910623900
-
The acetate switch of an intestinal pathogen disrupts host insulin signaling and lipid metabolism
-
Hang S, Purdy AE, Robins WP, Wang Z, Mandal M, Chang S, Mekalanos JJ, Watnick PI. The acetate switch of an intestinal pathogen disrupts host insulin signaling and lipid metabolism. Cell Host Microbe. 2014;16(5):592-604.
-
(2014)
Cell Host Microbe
, vol.16
, Issue.5
, pp. 592-604
-
-
Hang, S.1
Purdy, A.E.2
Robins, W.P.3
Wang, Z.4
Mandal, M.5
Chang, S.6
Mekalanos, J.J.7
Watnick, P.I.8
-
30
-
-
84947426731
-
Microbiota-dependent priming of antiviral intestinal immunity in drosophila
-
Sansone CL, Cohen J, Yasunaga A, Xu J, Osborn G, Subramanian H, Gold B, Buchon N, Cherry S. Microbiota-dependent priming of antiviral intestinal immunity in drosophila. Cell Host Microbe. 2015;18(5):571-81.
-
(2015)
Cell Host Microbe
, vol.18
, Issue.5
, pp. 571-581
-
-
Sansone, C.L.1
Cohen, J.2
Yasunaga, A.3
Xu, J.4
Osborn, G.5
Subramanian, H.6
Gold, B.7
Buchon, N.8
Cherry, S.9
-
31
-
-
84973293313
-
Molecular mechanism and functional significance of acid generation in the Drosophila midgut
-
Overend G, Luo Y, Henderson L, Douglas AE, Davies SA, Dow JA. Molecular mechanism and functional significance of acid generation in the Drosophila midgut. Scientific reports. 2016;6:27242.
-
(2016)
Scientific reports
, vol.6
, pp. 27242
-
-
Overend, G.1
Luo, Y.2
Henderson, L.3
Douglas, A.E.4
Davies, S.A.5
Dow, J.A.6
-
32
-
-
83655165305
-
Is the regulation of insulin signaling multi-organismal?
-
Douglas AE. Is the regulation of insulin signaling multi-organismal? Sci Signal. 2011;4(203):e46.
-
(2011)
Sci Signal
, vol.4
, Issue.203
-
-
Douglas, A.E.1
-
33
-
-
84860643186
-
Impact of the resident microbiota on the nutritional phenotype of Drosophila melanogaster
-
Ridley EV, Wong AC, Westmiller S, Douglas AE. Impact of the resident microbiota on the nutritional phenotype of Drosophila melanogaster. PLoS One. 2012;7(5):e36765.
-
(2012)
PLoS One
, vol.7
, Issue.5
-
-
Ridley, E.V.1
Wong, A.C.2
Westmiller, S.3
Douglas, A.E.4
-
34
-
-
84959017701
-
Lactobacillus plantarum strain maintains growth of infant mice during chronic undernutrition
-
Schwarzer M, Makki K, Storelli G, Machuca-Gayet I, Srutkova D, Hermanova P, Martino ME, Balmand S, Hudcovic T, Heddi A, et al. Lactobacillus plantarum strain maintains growth of infant mice during chronic undernutrition. Science. 2016;351(6275):854-7.
-
(2016)
Science
, vol.351
, Issue.6275
, pp. 854-857
-
-
Schwarzer, M.1
Makki, K.2
Storelli, G.3
Machuca-Gayet, I.4
Srutkova, D.5
Hermanova, P.6
Martino, M.E.7
Balmand, S.8
Hudcovic, T.9
Heddi, A.10
-
35
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W. Differential expression analysis for sequence count data. Genome Biol. 2010;11(10):R106.
-
(2010)
Genome Biol
, vol.11
, Issue.10
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
36
-
-
60549111634
-
WGCNA: an R package for weighted correlation network analysis
-
Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. 2008;9:559.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
37
-
-
41449085571
-
Eigengene networks for studying the relationships between coexpression modules
-
Langfelder P, Horvath S. Eigengene networks for studying the relationships between coexpression modules. BMC Syst Biol. 2007;1:54.
-
(2007)
BMC Syst Biol
, vol.1
, pp. 54
-
-
Langfelder, P.1
Horvath, S.2
-
38
-
-
84866183226
-
Ageing as a risk factor for disease
-
Nicoli T, Partridge L. Ageing as a risk factor for disease. Curr Biol. 2012;22:R741.
-
(2012)
Curr Biol
, vol.22
, pp. R741
-
-
Nicoli, T.1
Partridge, L.2
-
39
-
-
79954628932
-
Ageing in Drosophila: the role of the insulin/igf and TOR signaling network
-
Partridge L, Alic N, Biedov I, Piper MD. Ageing in Drosophila: the role of the insulin/igf and TOR signaling network. Exp Gerontol. 2011;46:376.
-
(2011)
Exp Gerontol
, vol.46
, pp. 376
-
-
Partridge, L.1
Alic, N.2
Biedov, I.3
Piper, M.D.4
|