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Volumn 371, Issue 1706, 2016, Pages

Sex in a test tube: Testing the benefits of in vitro recombination

Author keywords

Evolution of sex; Fitness landscape; In vitro recombination; Laboratory directed evolution; Origin of life

Indexed keywords

ALLELE; ENZYME ACTIVITY; FITNESS; GENOTYPE; HYPOTHESIS TESTING; LABORATORY METHOD; MUTATION; NUCLEIC ACID; ORIGIN OF LIFE; RECOMBINATION; SEX ROLE;

EID: 84988564541     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2015.0529     Document Type: Review
Times cited : (12)

References (98)
  • 1
    • 33846277942 scopus 로고    scopus 로고
    • The evolution of sex: Empirical insights into the roles of epistasis and drift
    • de Visser JAGM, Elena SF. 2007 The evolution of sex: empirical insights into the roles of epistasis and drift. Nat. Rev. Genet. 8, 139-149. (doi: 10.1038/nrg1985)
    • (2007) Nat. Rev. Genet , vol.8 , pp. 139-149
    • de Visser, J.A.G.M.1    Elena, S.F.2
  • 2
    • 68549133539 scopus 로고    scopus 로고
    • The evolutionary enigma of sex
    • Otto SP. 2009 The evolutionary enigma of sex. Am. Nat. 174, S1-S14. (doi: 10.1086/599084)
    • (2009) Am. Nat , vol.174 , pp. S1-S14
    • Otto, S.P.1
  • 4
    • 0029022154 scopus 로고
    • A general model for the evolution of recombination
    • Barton NH. 1995 A general model for the evolution of recombination. Genet. Res., 65, 123-144. (doi: 10.1017/s0016672300033140)
    • (1995) Genet. Res , vol.65 , pp. 123-144
    • Barton, N.H.1
  • 5
    • 21044435697 scopus 로고    scopus 로고
    • Perspective: Sign epistasis and genetic constraint on evolutionary trajectories
    • Weinreich DM, Watson RA, Chao L. 2005 Perspective: sign epistasis and genetic constraint on evolutionary trajectories. Evolution, 59, 1165-1174. (doi: 10.1111/j.0014-3820.2005.tb01768.x)
    • (2005) Evolution , vol.59 , pp. 1165-1174
    • Weinreich, D.M.1    Watson, R.A.2    Chao, L.3
  • 6
    • 84902775598 scopus 로고    scopus 로고
    • Empirical fitness landscapes and the predictability of evolution
    • de Visser JAGM, Krug J. 2014 Empirical fitness landscapes and the predictability of evolution. Nat. Rev. Genet. 15, 480-490. (doi: 10.1038/nrg3744)
    • (2014) Nat. Rev. Genet , vol.15 , pp. 480-490
    • de Visser, J.A.G.M.1    Krug, J.2
  • 7
    • 0000907353 scopus 로고
    • The roles of mutation, inbreeding, crossbreeding, and selection in evolution
    • DF Jones, See
    • Wright S. 1932 The roles of mutation, inbreeding, crossbreeding, and selection in evolution. In Proc. 6th Intl Congr. Genetics, Ithaca, NY, vol. 1 (ed. DF Jones), pp. 356-366. See http://www.esp.org/books/6th-congress/facsimile/contents/6th-congp356- wright.pdf.
    • (1932) Proc. 6th Intl Congr. Genetics, Ithaca, NY , vol.1 , pp. 356-366
    • Wright, S.1
  • 8
    • 68549127130 scopus 로고    scopus 로고
    • Exploring the effect of sex on empirical fitness landscapes
    • de Visser JAGM, Park SC, Krug J. 2009 Exploring the effect of sex on empirical fitness landscapes. Am. Nat. 174, S15-S30. (doi: 10.1086/599081)
    • (2009) Am. Nat , vol.174 , pp. S15-S30
    • de Visser, J.A.G.M.1    Park, S.C.2    Krug, J.3
  • 9
    • 84907587685 scopus 로고    scopus 로고
    • Multidimensional epistasis and the transitory advantage of sex
    • Nowak S, Neidhart J, Szendro IG, Krug J. 2014 Multidimensional epistasis and the transitory advantage of sex. PLoS Comput. Biol. 10, e1003836. (doi: 10.1371/journal.pcbi.1003836)
    • (2014) PLoS Comput. Biol , vol.10 , pp. e1003836
    • Nowak, S.1    Neidhart, J.2    Szendro, I.G.3    Krug, J.4
  • 10
    • 0030457013 scopus 로고    scopus 로고
    • Population genetic perspectives on the evolution of recombination
    • Feldman MW, Otto SP, Christiansen FB. 1996 Population genetic perspectives on the evolution of recombination. Annu. Rev. Genet. 30, 261-295. (doi: 10.1146/annurev.genet.30.1.261)
    • (1996) Annu. Rev. Genet , vol.30 , pp. 261-295
    • Feldman, M.W.1    Otto, S.P.2    Christiansen, F.B.3
  • 11
    • 15844412621 scopus 로고    scopus 로고
    • Sex increases the efficacy of natural selection in experimental yeast populations
    • Goddard MR, Godfray H, Burt A. 2005 Sex increases the efficacy of natural selection in experimental yeast populations. Nature, 434, 636-640. (doi: 10.1038/nature03405)
    • (2005) Nature , vol.434 , pp. 636-640
    • Goddard, M.R.1    Godfray, H.2    Burt, A.3
  • 12
    • 34548693859 scopus 로고    scopus 로고
    • Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli
    • Cooper TF. 2007 Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli. PLoS Biol. 5, e225. (doi: 10.1371/journal.pbio.0050225.st003)
    • (2007) PLoS Biol , vol.5 , pp. e225
    • Cooper, T.F.1
  • 13
    • 84960846818 scopus 로고    scopus 로고
    • Sex speeds adaptation by altering the dynamics of molecular evolution
    • McDonald MJ, Rice DP, Desai MM. 2016 Sex speeds adaptation by altering the dynamics of molecular evolution. Nature, 531, 233-236. (doi: 10.1038/nature17143)
    • (2016) Nature , vol.531 , pp. 233-236
    • McDonald, M.J.1    Rice, D.P.2    Desai, M.M.3
  • 14
    • 34548311711 scopus 로고    scopus 로고
    • Forty years of in vitro evolution
    • Joyce GF. 2007 Forty years of in vitro evolution. Angew. Chem. Int. Ed. Engl. 46, 6420-6436. (doi: 10.1002/anie.200701369)
    • (2007) Angew. Chem. Int. Ed. Engl , vol.46 , pp. 6420-6436
    • Joyce, G.F.1
  • 15
    • 1242313260 scopus 로고
    • Adaptation in natural and artificial systems
    • Holland JH. 1992 Adaptation in natural and artificial systems. SIAM Rev. 18, 529-530. (doi: 10.1137/1018105)
    • (1992) SIAM Rev , vol.18 , pp. 529-530
    • Holland, J.H.1
  • 17
    • 0014935646 scopus 로고
    • Natural selection and the concept of a protein space
    • Smith JM. 1970 Natural selection and the concept of a protein space. Nature, 225, 563-564. (doi: 10.1038/225563a0)
    • (1970) Nature , vol.225 , pp. 563-564
    • Smith, J.M.1
  • 18
    • 0029040284 scopus 로고
    • Search strategies for applied molecular evolution
    • Kauffman SA, Macready WG. 1995 Search strategies for applied molecular evolution. J. Theor. Biol. 173, 427-440. (doi: 10.1006/jtbi.1995.0074)
    • (1995) J. Theor. Biol , vol.173 , pp. 427-440
    • Kauffman, S.A.1    Macready, W.G.2
  • 19
    • 33845864966 scopus 로고    scopus 로고
    • Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein
    • Bershtein S, Segal M, Bekerman R, Tokuriki N, Tawfik DS. 2006 Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein. Nature, 444, 929-932. (doi: 10.1038/nature05385)
    • (2006) Nature , vol.444 , pp. 929-932
    • Bershtein, S.1    Segal, M.2    Bekerman, R.3    Tokuriki, N.4    Tawfik, D.S.5
  • 20
    • 70450242805 scopus 로고    scopus 로고
    • Exploring protein fitness landscapes by directed evolution
    • Romero PA, Arnold FH. 2009 Exploring protein fitness landscapes by directed evolution. Nat. Rev. Mol. Cell. Biol. 10, 866-876. (doi: 10.1038/nrm2805)
    • (2009) Nat. Rev. Mol. Cell. Biol , vol.10 , pp. 866-876
    • Romero, P.A.1    Arnold, F.H.2
  • 21
    • 0030871021 scopus 로고    scopus 로고
    • The evolution of recombination: Removing the limits to natural selection
    • Otto SP, Barton NH. 1997 The evolution of recombination: removing the limits to natural selection. Genetics 147, 879.
    • (1997) Genetics , vol.147 , pp. 879
    • Otto, S.P.1    Barton, N.H.2
  • 22
    • 0001224667 scopus 로고
    • Some genetic aspects of sex
    • Muller HJ. 1932 Some genetic aspects of sex. Am. Nat. 66, 118-138. (doi: 10.1086/280418)
    • (1932) Am. Nat , vol.66 , pp. 118-138
    • Muller, H.J.1
  • 24
    • 50549201557 scopus 로고
    • The relation of recombination to mutational advance
    • Muller HJ. 1964 The relation of recombination to mutational advance. Mutat. Res. 106, 2-9. (doi: 10.1016/0027-5107(64)90047-8)
    • (1964) Mutat. Res , vol.106 , pp. 2-9
    • Muller, H.J.1
  • 25
    • 0023737547 scopus 로고
    • Deleterious mutations and the evolution of sexual reproduction
    • Kondrashov AS. 1988 Deleterious mutations and the evolution of sexual reproduction. Nature, 336, 435-440. (doi: 10.1038/336435a0)
    • (1988) Nature , vol.336 , pp. 435-440
    • Kondrashov, A.S.1
  • 26
    • 0029040245 scopus 로고
    • Linkage and the limits to natural selection
    • Barton NH. 1995 Linkage and the limits to natural selection. Genetics, 140, 821-841. (doi: 10.1098/rstb.2010.0106)
    • (1995) Genetics , vol.140 , pp. 821-841
    • Barton, N.H.1
  • 27
    • 34248364854 scopus 로고    scopus 로고
    • Epistasis between deleterious mutations and the evolution of recombination
    • Kouyos RD, Silander OK, Bonhoeffer S. 2007 Epistasis between deleterious mutations and the evolution of recombination. Trends Ecol. Evol. (Amst.) 22, 308-315. (doi: 10.1016/j.tree.2007.02.014)
    • (2007) Trends Ecol. Evol. (Amst.) , vol.22 , pp. 308-315
    • Kouyos, R.D.1    Silander, O.K.2    Bonhoeffer, S.3
  • 28
    • 78650592680 scopus 로고    scopus 로고
    • Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes
    • Poelwijk FJ, Tănase-Nicola S, Kiviet DJ, Tans SJ. 2011 Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes. J. Theor. Biol. 272, 141-144. (doi: 10.1016/j.jtbi.2010.12.015)
    • (2011) J. Theor. Biol , vol.272 , pp. 141-144
    • Poelwijk, F.J.1    Tănase-Nicola, S.2    Kiviet, D.J.3    Tans, S.J.4
  • 29
    • 79960463222 scopus 로고    scopus 로고
    • The low cost of recombination in creating novel phenotypes
    • Wagner A. 2011 The low cost of recombination in creating novel phenotypes. Bioessays, 33, 636-646. (doi: 10.1002/bies.201100027)
    • (2011) Bioessays , vol.33 , pp. 636-646
    • Wagner, A.1
  • 30
    • 79251503942 scopus 로고    scopus 로고
    • Genome structure and the benefit of sex
    • Watson RA, Weinreich DM, Wakeley J. 2010 Genome structure and the benefit of sex. Evolution, 65, 523-536. (doi: 10.1111/j.1558-5646.2010.01144.x)
    • (2010) Evolution , vol.65 , pp. 523-536
    • Watson, R.A.1    Weinreich, D.M.2    Wakeley, J.3
  • 31
    • 66149145312 scopus 로고    scopus 로고
    • Competition between recombination and epistasis can cause a transition from allele to genotype selection
    • Neher RA, Shraiman BI. 2009 Competition between recombination and epistasis can cause a transition from allele to genotype selection. Proc. Natl Acad. Sci. USA, 106, 6866-6871. (doi: 10.1073/pnas.0812560106)
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 6866-6871
    • Neher, R.A.1    Shraiman, B.I.2
  • 32
    • 61349112079 scopus 로고    scopus 로고
    • From fitness landscapes to seascapes: Non-equilibrium dynamics of selection and adaptation
    • Mustonen V, Lässig M. 2009 From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation. Trends Genet. 25, 111-119. (doi: 10.1016/j.tig.2009.01.002)
    • (2009) Trends Genet , vol.25 , pp. 111-119
    • Mustonen, V.1    Lässig, M.2
  • 33
    • 0024443885 scopus 로고
    • Amplification, mutation and selection of catalytic RNA
    • Joyce GF. 1989 Amplification, mutation and selection of catalytic RNA. Gene, 82, 83-87. (doi: 10.1016/0378-1119(89)90033-4)
    • (1989) Gene , vol.82 , pp. 83-87
    • Joyce, G.F.1
  • 34
    • 84931574824 scopus 로고    scopus 로고
    • Methods for the directed evolution of proteins
    • Packer MS, Liu DR. 2015 Methods for the directed evolution of proteins. Nat. Rev. Genet. 16, 379-394. (doi: 10.1038/nrg3927)
    • (2015) Nat. Rev. Genet , vol.16 , pp. 379-394
    • Packer, M.S.1    Liu, D.R.2
  • 35
    • 0028110130 scopus 로고
    • DNA shuffling by random fragmentation and reassembly: In vitro recombination for molecular evolution
    • Stemmer WP. 1994 DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution. Proc. Natl Acad. Sci. USA 91, 10 747-10 751. (doi: 10.1073/pnas.91.22.10747)
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 10 747-10 751
    • Stemmer, W.P.1
  • 37
    • 84879229500 scopus 로고    scopus 로고
    • To get what we aim for-progress in diversity generation methods
    • Ruff AJ, Dennig A, Schwaneberg U. 2013 To get what we aim for-progress in diversity generation methods. FEBS J. 280, 2961-2978. (doi: 10.1111/febs.12325)
    • (2013) FEBS J , vol.280 , pp. 2961-2978
    • Ruff, A.J.1    Dennig, A.2    Schwaneberg, U.3
  • 38
    • 0032518266 scopus 로고    scopus 로고
    • DNA shuffling of a family of genes from diverse species accelerates directed evolution
    • Crameri A, Raillard SA, Bermudez E, Stemmer WP. 1998 DNA shuffling of a family of genes from diverse species accelerates directed evolution. Nature 391, 288-291. (doi: 10.1038/34663)
    • (1998) Nature , vol.391 , pp. 288-291
    • Crameri, A.1    Raillard, S.A.2    Bermudez, E.3    Stemmer, W.P.4
  • 39
    • 0031909113 scopus 로고    scopus 로고
    • Molecular evolution by staggered extension process (StEP) in vitro recombination
    • Zhao H, Giver L, Shao Z, Affholter JA, Arnold FH. 1998 Molecular evolution by staggered extension process (StEP) in vitro recombination. Nat. Biotechnol. 16, 258-261. (doi: 10.1038/nbt0398-258)
    • (1998) Nat. Biotechnol , vol.16 , pp. 258-261
    • Zhao, H.1    Giver, L.2    Shao, Z.3    Affholter, J.A.4    Arnold, F.H.5
  • 41
    • 0035025314 scopus 로고    scopus 로고
    • Libraries of hybrid proteins from distantly related sequences
    • Sieber V, Martinez CA, Arnold FH. 2001 Libraries of hybrid proteins from distantly related sequences. Nat. Biotechnol. 19, 456-460. (doi: 10.1038/88129)
    • (2001) Nat. Biotechnol , vol.19 , pp. 456-460
    • Sieber, V.1    Martinez, C.A.2    Arnold, F.H.3
  • 42
  • 43
    • 0036788537 scopus 로고    scopus 로고
    • Nucleic acid evolution and minimization by nonhomologous random recombination
    • Bittker JA, Le BV, Liu DR. 2002 Nucleic acid evolution and minimization by nonhomologous random recombination. Nat. Biotechnol. 20, 1024-1029. (doi: 10.1038/nbt736)
    • (2002) Nat. Biotechnol , vol.20 , pp. 1024-1029
    • Bittker, J.A.1    Le, B.V.2    Liu, D.R.3
  • 44
    • 77953229115 scopus 로고    scopus 로고
    • The mechanism of doublestrand DNA break repair by the nonhomologous DNA end-joining pathway
    • Lieber MR. 2010 The mechanism of doublestrand DNA break repair by the nonhomologous DNA end-joining pathway. Annu. Rev. Biochem. 79, 181-211. (doi: 10.1146/annurev.biochem.052308.093131)
    • (2010) Annu. Rev. Biochem , vol.79 , pp. 181-211
    • Lieber, M.R.1
  • 45
    • 0035424404 scopus 로고    scopus 로고
    • Advances in directed protein evolution by recursive genetic recombination: Applications to therapeutic proteins
    • Kurtzman AL, Govindarajan S, Vahle K, Jones JT, Heinrichs V, Patten PA. 2001 Advances in directed protein evolution by recursive genetic recombination: applications to therapeutic proteins. Curr. Opin. Biotech. 12, 361-370. (doi: 10.1016/S0958-1669(00)00228-7)
    • (2001) Curr. Opin. Biotech , vol.12 , pp. 361-370
    • Kurtzman, A.L.1    Govindarajan, S.2    Vahle, K.3    Jones, J.T.4    Heinrichs, V.5    Patten, P.A.6
  • 46
    • 0034283566 scopus 로고    scopus 로고
    • High-density mutagenesis by combined DNA shuffling and phage display to assign essential amino acid residues in protein-protein interactions: Application to study structurefunction of plasminogen activation inhibitor 1 (PAI-1)
    • Stoop AA, Jespers L, Lasters I, Eldering E, Pannekoek H. 2000 High-density mutagenesis by combined DNA shuffling and phage display to assign essential amino acid residues in protein-protein interactions: application to study structurefunction of plasminogen activation inhibitor 1 (PAI-1). J. Mol. Biol. 301, 1135-1147. (doi: 10.1006/jmbi.2000.4035)
    • (2000) J. Mol. Biol , vol.301 , pp. 1135-1147
    • Stoop, A.A.1    Jespers, L.2    Lasters, I.3    Eldering, E.4    Pannekoek, H.5
  • 47
    • 0028050350 scopus 로고
    • Rapid evolution of a protein in vitro by DNA shuffling
    • Stemmer WP. 1994 Rapid evolution of a protein in vitro by DNA shuffling. Nature, 370, 389-391. (doi: 10.1038/370389a0)
    • (1994) Nature , vol.370 , pp. 389-391
    • Stemmer, W.P.1
  • 48
    • 0030048583 scopus 로고    scopus 로고
    • Construction and evolution of antibody-phage libraries by DNA shuffling
    • Crameri A, Cwirla S, Stemmer WP. 1996 Construction and evolution of antibody-phage libraries by DNA shuffling. Nat. Med. 2, 100-102. (doi: 10.1038/nm0196-100)
    • (1996) Nat. Med , vol.2 , pp. 100-102
    • Crameri, A.1    Cwirla, S.2    Stemmer, W.P.3
  • 49
    • 0041324888 scopus 로고    scopus 로고
    • Comparison of directed evolution approaches using the b-glucuronidase model system
    • Rowe LA, Geddie ML, Alexander OB, Matsumura I. 2003A comparison of directed evolution approaches using the b-glucuronidase model system. J. Mol. Biol. 332, 851-860. (doi: 10.1016/S0022-2836 (03)00972-0)
    • (2003) J. Mol. Biol , vol.332 , pp. 851-860
    • Rowe, L.A.1    Geddie, M.L.2    Alexander, O.B.3    Matsumura, I.4
  • 50
    • 0035969999 scopus 로고    scopus 로고
    • Directed evolution of ampicillin-resistant activity from a functionally unrelated DNA fragment: A laboratory model of molecular evolution
    • Yano T, Kagamiyama H. 2001 Directed evolution of ampicillin-resistant activity from a functionally unrelated DNA fragment: a laboratory model of molecular evolution. Proc. Natl Acad. Sci. USA, 98, 903-907. (doi: 10.1073/pnas.031442298)
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 903-907
    • Yano, T.1    Kagamiyama, H.2
  • 51
    • 84880673487 scopus 로고    scopus 로고
    • Synthetic shuffling and in vitro selection reveal the rugged adaptive fitness landscape of a kinase ribozyme
    • Curtis EA, Bartel DP. 2013 Synthetic shuffling and in vitro selection reveal the rugged adaptive fitness landscape of a kinase ribozyme. RNA, 19, 1116-1128. (doi: 10.1261/rna.037572.112)
    • (2013) RNA , vol.19 , pp. 1116-1128
    • Curtis, E.A.1    Bartel, D.P.2
  • 52
    • 84899879902 scopus 로고    scopus 로고
    • In vivo evolution of a catalytic RNA couples trans-splicing to translation
    • Olson KE, Dolan GF, Müller UF. 2014 In vivo evolution of a catalytic RNA couples trans-splicing to translation. PLoS ONE 9, e86473. (doi: 10.1371/journal.pone.0086473)
    • (2014) PLoS ONE , vol.9 , pp. e86473
    • Olson, K.E.1    Dolan, G.F.2    Müller, U.F.3
  • 53
    • 79953809654 scopus 로고    scopus 로고
    • Ribozyme-catalyzed transcription of an active ribozyme
    • Wochner A, Attwater J, Coulson A, Holliger P. 2011 Ribozyme-catalyzed transcription of an active ribozyme. Science, 332, 209-212. (doi: 10.1126/science.1200752)
    • (2011) Science , vol.332 , pp. 209-212
    • Wochner, A.1    Attwater, J.2    Coulson, A.3    Holliger, P.4
  • 54
    • 84934931117 scopus 로고    scopus 로고
    • Stepwise error-prone PCR and DNA shuffling changed the pH activity range and product specificity of the cyclodextrin glucanotransferase from an alkaliphilic Bacillus sp
    • Melzer S, Sonnendecker C, Föllner C, Zimmermann W. 2015 Stepwise error-prone PCR and DNA shuffling changed the pH activity range and product specificity of the cyclodextrin glucanotransferase from an alkaliphilic Bacillus sp. FEBS Open Bio. 5, 528-534. (doi: 10.1016/j.fob.2015.06.002)
    • (2015) FEBS Open Bio , vol.5 , pp. 528-534
    • Melzer, S.1    Sonnendecker, C.2    Föllner, C.3    Zimmermann, W.4
  • 56
    • 24744463589 scopus 로고    scopus 로고
    • Recombination during in vitro evolution
    • Lehman N, Unrau PJ. 2005 Recombination during in vitro evolution. J. Mol. Evol. 61, 245-252. (doi: 10.1007/s00239-004-0373-4)
    • (2005) J. Mol. Evol , vol.61 , pp. 245-252
    • Lehman, N.1    Unrau, P.J.2
  • 57
    • 78650745791 scopus 로고    scopus 로고
    • Complexity through recombination: From chemistry to biology
    • Lehman N, Arenas CD, White WA, Schmidt FJ. 2010 Complexity through recombination: from chemistry to biology. Entropy, 13, 17-37. (doi: 10.3390/e13010017)
    • (2010) Entropy , vol.13 , pp. 17-37
    • Lehman, N.1    Arenas, C.D.2    White, W.A.3    Schmidt, F.J.4
  • 58
    • 2542473234 scopus 로고    scopus 로고
    • Replicable and recombinogenic RNAs
    • Chetverin AB. 2004 Replicable and recombinogenic RNAs. FEBS Lett. 567, 35-41. (doi: 10.1016/j. febslet.2004.03.066)
    • (2004) FEBS Lett , vol.567 , pp. 35-41
    • Chetverin, A.B.1
  • 59
    • 0014107493 scopus 로고
    • An extracellular Darwinian experiment with a selfduplicating nucleic acid molecule
    • Mills DR, Peterson RL, Spiegelman S. 1967 An extracellular Darwinian experiment with a selfduplicating nucleic acid molecule. Proc. Natl Acad. Sci. USA, 58, 217-224. (doi: 10.1073/pnas.58.1.217)
    • (1967) Proc. Natl Acad. Sci. USA , vol.58 , pp. 217-224
    • Mills, D.R.1    Peterson, R.L.2    Spiegelman, S.3
  • 60
    • 0020417286 scopus 로고
    • Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena
    • Kruger K, Grabowski PJ, Zaug AJ, Sands J, Gottschling DE, Cech TR. 1982 Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell, 31, 147-157. (doi: 10.1016/0092-8674(82)90414-7)
    • (1982) Cell , vol.31 , pp. 147-157
    • Kruger, K.1    Grabowski, P.J.2    Zaug, A.J.3    Sands, J.4    Gottschling, D.E.5    Cech, T.R.6
  • 61
    • 0021013526 scopus 로고
    • The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
    • Guerrier-Takada C, Gardiner K, Marsh T, Pace N, Altman S. 1983 The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell, 35, 849-857. (doi: 10.1016/0092-8674(83)90117-4)
    • (1983) Cell , vol.35 , pp. 849-857
    • Guerrier-Takada, C.1    Gardiner, K.2    Marsh, T.3    Pace, N.4    Altman, S.5
  • 62
    • 36849148382 scopus 로고
    • Origin of life: The RNA world
    • Gilbert W. 1986 Origin of life: the RNA world. Nature, 319, 618. (doi: 10.1038/319618a0)
    • (1986) Nature , vol.319 , pp. 618
    • Gilbert, W.1
  • 63
    • 0141631820 scopus 로고    scopus 로고
    • Nonreplicative homologous RNA recombination: Promiscuous joining of RNA pieces?
    • Gmyl AP, Korshenko SA, Belousov EV, Khitrina EV, Agol VI. 2003 Nonreplicative homologous RNA recombination: promiscuous joining of RNA pieces? RNA, 9, 1221-1231. (doi: 10.1261/rna.5111803)
    • (2003) RNA , vol.9 , pp. 1221-1231
    • Gmyl, A.P.1    Korshenko, S.A.2    Belousov, E.V.3    Khitrina, E.V.4    Agol, V.I.5
  • 64
    • 67149094711 scopus 로고    scopus 로고
    • Non-enzymatic template-directed recombination of RNAs
    • Nechaev SY, Lutay AV, Vlassov VV, Zenkova MA. 2009 Non-enzymatic template-directed recombination of RNAs. Int. J. Mol. Sci. 10, 1788-1807. (doi: 10.3390/ijms10041788)
    • (2009) Int. J. Mol. Sci , vol.10 , pp. 1788-1807
    • Nechaev, S.Y.1    Lutay, A.V.2    Vlassov, V.V.3    Zenkova, M.A.4
  • 65
    • 0031686486 scopus 로고    scopus 로고
    • Recombination, RNA evolution, and bifunctional RNA molecules isolated through chimeric SELEX
    • Burke DH, Willis JH. 1998 Recombination, RNA evolution, and bifunctional RNA molecules isolated through chimeric SELEX. RNA, 4, 1165. (doi: 10.1017/S1355838298980542)
    • (1998) RNA , vol.4 , pp. 1165
    • Burke, D.H.1    Willis, J.H.2
  • 66
    • 15444362048 scopus 로고    scopus 로고
    • Ribozyme motif structure mapped using random recombination and selection
    • Wang QS, Unrau PJ. 2005 Ribozyme motif structure mapped using random recombination and selection. RNA, 11, 404-411. (doi: 10.1261/rna.7238705)
    • (2005) RNA , vol.11 , pp. 404-411
    • Wang, Q.S.1    Unrau, P.J.2
  • 67
    • 34249744737 scopus 로고    scopus 로고
    • Nonenzymatic recombination of RNA: Possible mechanism for the formation of novel sequences
    • Lutay AV, Zenkova MA, Vlassov VV. 2007 Nonenzymatic recombination of RNA: possible mechanism for the formation of novel sequences. Chem. Biodivers. 4, 762-767. (doi: 10.1002/cbdv.200790062)
    • (2007) Chem. Biodivers , vol.4 , pp. 762-767
    • Lutay, A.V.1    Zenkova, M.A.2    Vlassov, V.V.3
  • 68
    • 84874314316 scopus 로고    scopus 로고
    • Recycling of informational units leads to selection of replicators in a prebiotic soup
    • Vaidya N, Walker SI, Lehman N. 2013 Recycling of informational units leads to selection of replicators in a prebiotic soup. Chem. Biol. 20, 241-252. (doi: 10.1016/j.chembiol.2013.01.007)
    • (2013) Chem. Biol , vol.20 , pp. 241-252
    • Vaidya, N.1    Walker, S.I.2    Lehman, N.3
  • 69
    • 0025149489 scopus 로고
    • Group II intron RNAcatalyzed recombination of RNA in vitro
    • Mörl M, Schmelzer C. 1990 Group II intron RNAcatalyzed recombination of RNA in vitro. Nucleic Acids Res. 18, 6545-6551. (doi: 10.1093/nar/18.22.6545)
    • (1990) Nucleic Acids Res , vol.18 , pp. 6545-6551
    • Mörl, M.1    Schmelzer, C.2
  • 70
    • 0348136386 scopus 로고    scopus 로고
    • Generalized RNA-directed recombination of RNA
    • Riley CA, Lehman N. 2003 Generalized RNA-directed recombination of RNA. Chem. Biol., 10, 1233-1243. (doi: 10.1016/j.chembiol.2003.11.015)
    • (2003) Chem. Biol , vol.10 , pp. 1233-1243
    • Riley, C.A.1    Lehman, N.2
  • 71
    • 27144523459 scopus 로고    scopus 로고
    • RNA-directed construction of structurally complex and active ligase ribozymes through recombination
    • Hayden EJ, Riley CA, Burton AS, Lehman N. 2005 RNA-directed construction of structurally complex and active ligase ribozymes through recombination. RNA, 11, 1678-1687. (doi: 10.1261/rna.2125305)
    • (2005) RNA , vol.11 , pp. 1678-1687
    • Hayden, E.J.1    Riley, C.A.2    Burton, A.S.3    Lehman, N.4
  • 72
    • 0035906978 scopus 로고    scopus 로고
    • RNAcatalyzed RNA polymerization: Accurate and general RNA-templated primer extension
    • Johnston WK, Unrau PJ, Lawrence MS. 2001 RNAcatalyzed RNA polymerization: accurate and general RNA-templated primer extension. Science, 292, 1319-1325. (doi: 10.1126/science.1060786)
    • (2001) Science , vol.292 , pp. 1319-1325
    • Johnston, W.K.1    Unrau, P.J.2    Lawrence, M.S.3
  • 73
    • 34250860849 scopus 로고    scopus 로고
    • Selection of an improved RNA polymerase ribozyme with superior extension and fidelity
    • Zaher HS, Unrau PJ. 2007 Selection of an improved RNA polymerase ribozyme with superior extension and fidelity. RNA, 13, 1017-1026. (doi: 10.1261/rna.548807)
    • (2007) RNA , vol.13 , pp. 1017-1026
    • Zaher, H.S.1    Unrau, P.J.2
  • 74
    • 33947377391 scopus 로고    scopus 로고
    • A glimpse of biology’s first enzyme
    • Joyce GF. 2007 A glimpse of biology’s first enzyme. Science, 315, 1507-1508. (doi: 10.1126/science.1140736)
    • (2007) Science , vol.315 , pp. 1507-1508
    • Joyce, G.F.1
  • 75
    • 3042732096 scopus 로고    scopus 로고
    • Directed evolution of nucleic acid enzymes
    • Joyce GF. 2004 Directed evolution of nucleic acid enzymes. Annu. Rev. Biochem., 73, 791-836. (doi: 10.1146/annurev.biochem.73.011303.073717)
    • (2004) Annu. Rev. Biochem , vol.73 , pp. 791-836
    • Joyce, G.F.1
  • 76
    • 0038369787 scopus 로고    scopus 로고
    • A case for the extreme antiquity of recombination
    • Lehman N. 2003 A case for the extreme antiquity of recombination. J. Mol. Evol. 56, 770-777. (doi: 10.1007/s00239-003-2454-1)
    • (2003) J. Mol. Evol , vol.56 , pp. 770-777
    • Lehman, N.1
  • 77
    • 84945250692 scopus 로고    scopus 로고
    • The RNA world: 4,000,000,050 years old
    • Lehman N. 2015 The RNA world: 4,000,000,050 years old. Life, 5, 1583-1586. (doi: 10.3390/life5041583)
    • (2015) Life , vol.5 , pp. 1583-1586
    • Lehman, N.1
  • 78
    • 84922020605 scopus 로고    scopus 로고
    • From formamide to RNA, the path is tenuous but continuous
    • Pino S, Sponer J, Costanzo G, Saladino R, di Mauro E. 2015 From formamide to RNA, the path is tenuous but continuous. Life, 5, 372-384. (doi: 10.3390/life5010372)
    • (2015) Life , vol.5 , pp. 372-384
    • Pino, S.1    Sponer, J.2    Costanzo, G.3    Saladino, R.4    di Mauro, E.5
  • 79
    • 84930206675 scopus 로고    scopus 로고
    • Freeze- thaw cycles as drivers of complex ribozyme assembly
    • Mutschler H, Wochner A, Holliger P. 2015 Freeze- thaw cycles as drivers of complex ribozyme assembly. Nat. Chem. 7, 502-508. (doi: 10.1038/nchem.2251)
    • (2015) Nat. Chem , vol.7 , pp. 502-508
    • Mutschler, H.1    Wochner, A.2    Holliger, P.3
  • 80
    • 0034667684 scopus 로고    scopus 로고
    • Plasticity, evolvability, and modularity in RNA
    • Ancel LW, Fontana W. 2000 Plasticity, evolvability, and modularity in RNA. J. Exp. Zool. 288, 242-283. (doi: 10.1002/1097-010X(20001015)288: 3<242:: AID-JEZ5>3.0.CO;2-O)
    • (2000) J. Exp. Zool , vol.288 , pp. 242-283
    • Ancel, L.W.1    Fontana, W.2
  • 82
    • 17444431570 scopus 로고    scopus 로고
    • Expression, purification, and characterization of SARS coronavirus RNA polymerase
    • Cheng A, Zhang W, Xie Y, Jiang W, Arnold E, Sarafianos SG, Ding J. 2005 Expression, purification, and characterization of SARS coronavirus RNA polymerase. Virology, 335, 165-176. (doi: 10.1016/j. virol.2005.02.017)
    • (2005) Virology , vol.335 , pp. 165-176
    • Cheng, A.1    Zhang, W.2    Xie, Y.3    Jiang, W.4    Arnold, E.5    Sarafianos, S.G.6    Ding, J.7
  • 83
    • 0030975364 scopus 로고    scopus 로고
    • Nonhomologous RNA recombination in a cell-free system: Evidence for a transesterification mechanism guided by secondary structure
    • Chetverin AB, Chetverina HV, Demidenko AA, Ugarov VI. 1997 Nonhomologous RNA recombination in a cell-free system: evidence for a transesterification mechanism guided by secondary structure. Cell, 88, 503-513. (doi: 10.1016/S0092-8674(00)81890-5)
    • (1997) Cell , vol.88 , pp. 503-513
    • Chetverin, A.B.1    Chetverina, H.V.2    Demidenko, A.A.3    Ugarov, V.I.4
  • 85
    • 65249110487 scopus 로고    scopus 로고
    • The dawn of the RNA World: Toward functional complexity through ligation of random RNA oligomers
    • Briones C, Stich M, Manrubia SC. 2009 The dawn of the RNA World: toward functional complexity through ligation of random RNA oligomers. RNA, 15, 743-749. (doi: 10.1261/rna.1488609)
    • (2009) RNA , vol.15 , pp. 743-749
    • Briones, C.1    Stich, M.2    Manrubia, S.C.3
  • 86
    • 56149124653 scopus 로고    scopus 로고
    • A recombination-based model for the origin and early evolution of genetic information
    • Lehman N. 2008 A recombination-based model for the origin and early evolution of genetic information. Chem. Biodivers. 5, 1707-1717. (doi: 10.1002/cbdv.200890159)
    • (2008) Chem. Biodivers , vol.5 , pp. 1707-1717
    • Lehman, N.1
  • 88
    • 54149114377 scopus 로고    scopus 로고
    • Ohno’s model revisited: Measuring the frequency of potentially adaptive mutations under various mutational drifts
    • Bershtein S, Tawfik DS. 2008 Ohno’s model revisited: measuring the frequency of potentially adaptive mutations under various mutational drifts. Mol. Biol. Evol. 25, 2311-2318. (doi: 10.1093/molbev/msn174)
    • (2008) Mol. Biol. Evol , vol.25 , pp. 2311-2318
    • Bershtein, S.1    Tawfik, D.S.2
  • 89
    • 45849137874 scopus 로고    scopus 로고
    • Heterogeneous adaptive trajectories of small populations on complex fitness landscapes
    • Rozen DE, Habets MGJL, Handel A, de Visser JAGM. 2008 Heterogeneous adaptive trajectories of small populations on complex fitness landscapes. PLoS ONE 3, e1715. (doi: 10.1371/journal.pone.0001715)
    • (2008) PLoS ONE , vol.3 , pp. e1715
    • Rozen, D.E.1    Habets, M.G.J.L.2    Handel, A.3    de Visser, J.A.G.M.4
  • 90
    • 84935874404 scopus 로고    scopus 로고
    • A tortoise-hare pattern seen in adapting structured and unstructured populations suggests a rugged fitness landscape in bacteria
    • Nahum JR, Godfrey-Smith P. 2015 A tortoise-hare pattern seen in adapting structured and unstructured populations suggests a rugged fitness landscape in bacteria. Proc. Natl Acad. Sci. USA, 112, 7530-7535. (doi: 10.1073/pnas.1410631112)
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 7530-7535
    • Nahum, J.R.1    Godfrey-Smith, P.2
  • 91
    • 84971185409 scopus 로고
    • The correlation between relatives on the supposition of Mendelian inheritance
    • Fisher RA. 1919 The correlation between relatives on the supposition of Mendelian inheritance. Trans. R. Soc. Edin. 52, 399-433. (doi: 10.1017/s0080456800012163)
    • (1919) Trans. R. Soc. Edin , vol.52 , pp. 399-433
    • Fisher, R.A.1
  • 95
    • 84864070833 scopus 로고    scopus 로고
    • Quantifying the adaptive potential of an antibiotic resistance enzyme
    • Schenk MF, Szendro IG, Krug J, de Visser JAGM. 2012 Quantifying the adaptive potential of an antibiotic resistance enzyme. PLoS Genet. 8, e1002783. (doi: 10.1371/journal.pgen.1002783)
    • (2012) PLoS Genet , vol.8 , pp. e1002783
    • Schenk, M.F.1    Szendro, I.G.2    Krug, J.3    de Visser, J.A.G.M.4
  • 96
    • 77749270677 scopus 로고    scopus 로고
    • Ultrahigh-throughput screening in drop-based microfluidics for directed evolution
    • Agresti JJ et al. 2010 Ultrahigh-throughput screening in drop-based microfluidics for directed evolution. Proc. Natl Acad. Sci. USA, 107, 4004-4009. (doi: 10.1073/pnas.0910781107)
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 4004-4009
    • Agresti, J.J.1
  • 98
    • 0030754926 scopus 로고    scopus 로고
    • Optimization of DNA shuffling for high fidelity recombination
    • Zhao H, Arnold FH. 1997 Optimization of DNA shuffling for high fidelity recombination. Nucleic Acids Res. 25, 1307-1308. (doi: 10.1093/nar/25.6.1307)
    • (1997) Nucleic Acids Res , vol.25 , pp. 1307-1308
    • Zhao, H.1    Arnold, F.H.2


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