-
1
-
-
33846277942
-
The evolution of sex: Empirical insights into the roles of epistasis and drift
-
de Visser JAGM, Elena SF. 2007 The evolution of sex: empirical insights into the roles of epistasis and drift. Nat. Rev. Genet. 8, 139-149. (doi: 10.1038/nrg1985)
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 139-149
-
-
de Visser, J.A.G.M.1
Elena, S.F.2
-
2
-
-
68549133539
-
The evolutionary enigma of sex
-
Otto SP. 2009 The evolutionary enigma of sex. Am. Nat. 174, S1-S14. (doi: 10.1086/599084)
-
(2009)
Am. Nat
, vol.174
, pp. S1-S14
-
-
Otto, S.P.1
-
4
-
-
0029022154
-
A general model for the evolution of recombination
-
Barton NH. 1995 A general model for the evolution of recombination. Genet. Res., 65, 123-144. (doi: 10.1017/s0016672300033140)
-
(1995)
Genet. Res
, vol.65
, pp. 123-144
-
-
Barton, N.H.1
-
5
-
-
21044435697
-
Perspective: Sign epistasis and genetic constraint on evolutionary trajectories
-
Weinreich DM, Watson RA, Chao L. 2005 Perspective: sign epistasis and genetic constraint on evolutionary trajectories. Evolution, 59, 1165-1174. (doi: 10.1111/j.0014-3820.2005.tb01768.x)
-
(2005)
Evolution
, vol.59
, pp. 1165-1174
-
-
Weinreich, D.M.1
Watson, R.A.2
Chao, L.3
-
6
-
-
84902775598
-
Empirical fitness landscapes and the predictability of evolution
-
de Visser JAGM, Krug J. 2014 Empirical fitness landscapes and the predictability of evolution. Nat. Rev. Genet. 15, 480-490. (doi: 10.1038/nrg3744)
-
(2014)
Nat. Rev. Genet
, vol.15
, pp. 480-490
-
-
de Visser, J.A.G.M.1
Krug, J.2
-
7
-
-
0000907353
-
The roles of mutation, inbreeding, crossbreeding, and selection in evolution
-
DF Jones, See
-
Wright S. 1932 The roles of mutation, inbreeding, crossbreeding, and selection in evolution. In Proc. 6th Intl Congr. Genetics, Ithaca, NY, vol. 1 (ed. DF Jones), pp. 356-366. See http://www.esp.org/books/6th-congress/facsimile/contents/6th-congp356- wright.pdf.
-
(1932)
Proc. 6th Intl Congr. Genetics, Ithaca, NY
, vol.1
, pp. 356-366
-
-
Wright, S.1
-
8
-
-
68549127130
-
Exploring the effect of sex on empirical fitness landscapes
-
de Visser JAGM, Park SC, Krug J. 2009 Exploring the effect of sex on empirical fitness landscapes. Am. Nat. 174, S15-S30. (doi: 10.1086/599081)
-
(2009)
Am. Nat
, vol.174
, pp. S15-S30
-
-
de Visser, J.A.G.M.1
Park, S.C.2
Krug, J.3
-
9
-
-
84907587685
-
Multidimensional epistasis and the transitory advantage of sex
-
Nowak S, Neidhart J, Szendro IG, Krug J. 2014 Multidimensional epistasis and the transitory advantage of sex. PLoS Comput. Biol. 10, e1003836. (doi: 10.1371/journal.pcbi.1003836)
-
(2014)
PLoS Comput. Biol
, vol.10
, pp. e1003836
-
-
Nowak, S.1
Neidhart, J.2
Szendro, I.G.3
Krug, J.4
-
10
-
-
0030457013
-
Population genetic perspectives on the evolution of recombination
-
Feldman MW, Otto SP, Christiansen FB. 1996 Population genetic perspectives on the evolution of recombination. Annu. Rev. Genet. 30, 261-295. (doi: 10.1146/annurev.genet.30.1.261)
-
(1996)
Annu. Rev. Genet
, vol.30
, pp. 261-295
-
-
Feldman, M.W.1
Otto, S.P.2
Christiansen, F.B.3
-
11
-
-
15844412621
-
Sex increases the efficacy of natural selection in experimental yeast populations
-
Goddard MR, Godfray H, Burt A. 2005 Sex increases the efficacy of natural selection in experimental yeast populations. Nature, 434, 636-640. (doi: 10.1038/nature03405)
-
(2005)
Nature
, vol.434
, pp. 636-640
-
-
Goddard, M.R.1
Godfray, H.2
Burt, A.3
-
12
-
-
34548693859
-
Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli
-
Cooper TF. 2007 Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli. PLoS Biol. 5, e225. (doi: 10.1371/journal.pbio.0050225.st003)
-
(2007)
PLoS Biol
, vol.5
, pp. e225
-
-
Cooper, T.F.1
-
13
-
-
84960846818
-
Sex speeds adaptation by altering the dynamics of molecular evolution
-
McDonald MJ, Rice DP, Desai MM. 2016 Sex speeds adaptation by altering the dynamics of molecular evolution. Nature, 531, 233-236. (doi: 10.1038/nature17143)
-
(2016)
Nature
, vol.531
, pp. 233-236
-
-
McDonald, M.J.1
Rice, D.P.2
Desai, M.M.3
-
14
-
-
34548311711
-
Forty years of in vitro evolution
-
Joyce GF. 2007 Forty years of in vitro evolution. Angew. Chem. Int. Ed. Engl. 46, 6420-6436. (doi: 10.1002/anie.200701369)
-
(2007)
Angew. Chem. Int. Ed. Engl
, vol.46
, pp. 6420-6436
-
-
Joyce, G.F.1
-
15
-
-
1242313260
-
Adaptation in natural and artificial systems
-
Holland JH. 1992 Adaptation in natural and artificial systems. SIAM Rev. 18, 529-530. (doi: 10.1137/1018105)
-
(1992)
SIAM Rev
, vol.18
, pp. 529-530
-
-
Holland, J.H.1
-
17
-
-
0014935646
-
Natural selection and the concept of a protein space
-
Smith JM. 1970 Natural selection and the concept of a protein space. Nature, 225, 563-564. (doi: 10.1038/225563a0)
-
(1970)
Nature
, vol.225
, pp. 563-564
-
-
Smith, J.M.1
-
18
-
-
0029040284
-
Search strategies for applied molecular evolution
-
Kauffman SA, Macready WG. 1995 Search strategies for applied molecular evolution. J. Theor. Biol. 173, 427-440. (doi: 10.1006/jtbi.1995.0074)
-
(1995)
J. Theor. Biol
, vol.173
, pp. 427-440
-
-
Kauffman, S.A.1
Macready, W.G.2
-
19
-
-
33845864966
-
Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein
-
Bershtein S, Segal M, Bekerman R, Tokuriki N, Tawfik DS. 2006 Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein. Nature, 444, 929-932. (doi: 10.1038/nature05385)
-
(2006)
Nature
, vol.444
, pp. 929-932
-
-
Bershtein, S.1
Segal, M.2
Bekerman, R.3
Tokuriki, N.4
Tawfik, D.S.5
-
20
-
-
70450242805
-
Exploring protein fitness landscapes by directed evolution
-
Romero PA, Arnold FH. 2009 Exploring protein fitness landscapes by directed evolution. Nat. Rev. Mol. Cell. Biol. 10, 866-876. (doi: 10.1038/nrm2805)
-
(2009)
Nat. Rev. Mol. Cell. Biol
, vol.10
, pp. 866-876
-
-
Romero, P.A.1
Arnold, F.H.2
-
21
-
-
0030871021
-
The evolution of recombination: Removing the limits to natural selection
-
Otto SP, Barton NH. 1997 The evolution of recombination: removing the limits to natural selection. Genetics 147, 879.
-
(1997)
Genetics
, vol.147
, pp. 879
-
-
Otto, S.P.1
Barton, N.H.2
-
22
-
-
0001224667
-
Some genetic aspects of sex
-
Muller HJ. 1932 Some genetic aspects of sex. Am. Nat. 66, 118-138. (doi: 10.1086/280418)
-
(1932)
Am. Nat
, vol.66
, pp. 118-138
-
-
Muller, H.J.1
-
24
-
-
50549201557
-
The relation of recombination to mutational advance
-
Muller HJ. 1964 The relation of recombination to mutational advance. Mutat. Res. 106, 2-9. (doi: 10.1016/0027-5107(64)90047-8)
-
(1964)
Mutat. Res
, vol.106
, pp. 2-9
-
-
Muller, H.J.1
-
25
-
-
0023737547
-
Deleterious mutations and the evolution of sexual reproduction
-
Kondrashov AS. 1988 Deleterious mutations and the evolution of sexual reproduction. Nature, 336, 435-440. (doi: 10.1038/336435a0)
-
(1988)
Nature
, vol.336
, pp. 435-440
-
-
Kondrashov, A.S.1
-
26
-
-
0029040245
-
Linkage and the limits to natural selection
-
Barton NH. 1995 Linkage and the limits to natural selection. Genetics, 140, 821-841. (doi: 10.1098/rstb.2010.0106)
-
(1995)
Genetics
, vol.140
, pp. 821-841
-
-
Barton, N.H.1
-
27
-
-
34248364854
-
Epistasis between deleterious mutations and the evolution of recombination
-
Kouyos RD, Silander OK, Bonhoeffer S. 2007 Epistasis between deleterious mutations and the evolution of recombination. Trends Ecol. Evol. (Amst.) 22, 308-315. (doi: 10.1016/j.tree.2007.02.014)
-
(2007)
Trends Ecol. Evol. (Amst.)
, vol.22
, pp. 308-315
-
-
Kouyos, R.D.1
Silander, O.K.2
Bonhoeffer, S.3
-
28
-
-
78650592680
-
Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes
-
Poelwijk FJ, Tănase-Nicola S, Kiviet DJ, Tans SJ. 2011 Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes. J. Theor. Biol. 272, 141-144. (doi: 10.1016/j.jtbi.2010.12.015)
-
(2011)
J. Theor. Biol
, vol.272
, pp. 141-144
-
-
Poelwijk, F.J.1
Tănase-Nicola, S.2
Kiviet, D.J.3
Tans, S.J.4
-
29
-
-
79960463222
-
The low cost of recombination in creating novel phenotypes
-
Wagner A. 2011 The low cost of recombination in creating novel phenotypes. Bioessays, 33, 636-646. (doi: 10.1002/bies.201100027)
-
(2011)
Bioessays
, vol.33
, pp. 636-646
-
-
Wagner, A.1
-
30
-
-
79251503942
-
Genome structure and the benefit of sex
-
Watson RA, Weinreich DM, Wakeley J. 2010 Genome structure and the benefit of sex. Evolution, 65, 523-536. (doi: 10.1111/j.1558-5646.2010.01144.x)
-
(2010)
Evolution
, vol.65
, pp. 523-536
-
-
Watson, R.A.1
Weinreich, D.M.2
Wakeley, J.3
-
31
-
-
66149145312
-
Competition between recombination and epistasis can cause a transition from allele to genotype selection
-
Neher RA, Shraiman BI. 2009 Competition between recombination and epistasis can cause a transition from allele to genotype selection. Proc. Natl Acad. Sci. USA, 106, 6866-6871. (doi: 10.1073/pnas.0812560106)
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 6866-6871
-
-
Neher, R.A.1
Shraiman, B.I.2
-
32
-
-
61349112079
-
From fitness landscapes to seascapes: Non-equilibrium dynamics of selection and adaptation
-
Mustonen V, Lässig M. 2009 From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation. Trends Genet. 25, 111-119. (doi: 10.1016/j.tig.2009.01.002)
-
(2009)
Trends Genet
, vol.25
, pp. 111-119
-
-
Mustonen, V.1
Lässig, M.2
-
33
-
-
0024443885
-
Amplification, mutation and selection of catalytic RNA
-
Joyce GF. 1989 Amplification, mutation and selection of catalytic RNA. Gene, 82, 83-87. (doi: 10.1016/0378-1119(89)90033-4)
-
(1989)
Gene
, vol.82
, pp. 83-87
-
-
Joyce, G.F.1
-
34
-
-
84931574824
-
Methods for the directed evolution of proteins
-
Packer MS, Liu DR. 2015 Methods for the directed evolution of proteins. Nat. Rev. Genet. 16, 379-394. (doi: 10.1038/nrg3927)
-
(2015)
Nat. Rev. Genet
, vol.16
, pp. 379-394
-
-
Packer, M.S.1
Liu, D.R.2
-
35
-
-
0028110130
-
DNA shuffling by random fragmentation and reassembly: In vitro recombination for molecular evolution
-
Stemmer WP. 1994 DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution. Proc. Natl Acad. Sci. USA 91, 10 747-10 751. (doi: 10.1073/pnas.91.22.10747)
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 10 747-10 751
-
-
Stemmer, W.P.1
-
37
-
-
84879229500
-
To get what we aim for-progress in diversity generation methods
-
Ruff AJ, Dennig A, Schwaneberg U. 2013 To get what we aim for-progress in diversity generation methods. FEBS J. 280, 2961-2978. (doi: 10.1111/febs.12325)
-
(2013)
FEBS J
, vol.280
, pp. 2961-2978
-
-
Ruff, A.J.1
Dennig, A.2
Schwaneberg, U.3
-
38
-
-
0032518266
-
DNA shuffling of a family of genes from diverse species accelerates directed evolution
-
Crameri A, Raillard SA, Bermudez E, Stemmer WP. 1998 DNA shuffling of a family of genes from diverse species accelerates directed evolution. Nature 391, 288-291. (doi: 10.1038/34663)
-
(1998)
Nature
, vol.391
, pp. 288-291
-
-
Crameri, A.1
Raillard, S.A.2
Bermudez, E.3
Stemmer, W.P.4
-
39
-
-
0031909113
-
Molecular evolution by staggered extension process (StEP) in vitro recombination
-
Zhao H, Giver L, Shao Z, Affholter JA, Arnold FH. 1998 Molecular evolution by staggered extension process (StEP) in vitro recombination. Nat. Biotechnol. 16, 258-261. (doi: 10.1038/nbt0398-258)
-
(1998)
Nat. Biotechnol
, vol.16
, pp. 258-261
-
-
Zhao, H.1
Giver, L.2
Shao, Z.3
Affholter, J.A.4
Arnold, F.H.5
-
40
-
-
0035067250
-
DNA shuffling method for generating highly recombined genes and evolved enzymes
-
Coco WM, Levinson WE, Crist MJ, Hektor HJ, Darzins A, Pienkos PT, Squires CH, Monticello DJ. 2001 DNA shuffling method for generating highly recombined genes and evolved enzymes. Nat. Biotechnol. 19, 354-359. (doi: 10.1038/86744)
-
(2001)
Nat. Biotechnol
, vol.19
, pp. 354-359
-
-
Coco, W.M.1
Levinson, W.E.2
Crist, M.J.3
Hektor, H.J.4
Darzins, A.5
Pienkos, P.T.6
Squires, C.H.7
Monticello, D.J.8
-
41
-
-
0035025314
-
Libraries of hybrid proteins from distantly related sequences
-
Sieber V, Martinez CA, Arnold FH. 2001 Libraries of hybrid proteins from distantly related sequences. Nat. Biotechnol. 19, 456-460. (doi: 10.1038/88129)
-
(2001)
Nat. Biotechnol
, vol.19
, pp. 456-460
-
-
Sieber, V.1
Martinez, C.A.2
Arnold, F.H.3
-
42
-
-
0035949702
-
Creating multiple-crossover DNA libraries independent of sequence identity
-
Lutz S, Ostermeier M, Moore GL, Maranas CD, Benkovic SJ. 2001 Creating multiple-crossover DNA libraries independent of sequence identity. Proc. Natl Acad. Sci. USA 98, 11 248-11 253. (doi: 10.1073/pnas.201413698)
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 11 248-11 253
-
-
Lutz, S.1
Ostermeier, M.2
Moore, G.L.3
Maranas, C.D.4
Benkovic, S.J.5
-
43
-
-
0036788537
-
Nucleic acid evolution and minimization by nonhomologous random recombination
-
Bittker JA, Le BV, Liu DR. 2002 Nucleic acid evolution and minimization by nonhomologous random recombination. Nat. Biotechnol. 20, 1024-1029. (doi: 10.1038/nbt736)
-
(2002)
Nat. Biotechnol
, vol.20
, pp. 1024-1029
-
-
Bittker, J.A.1
Le, B.V.2
Liu, D.R.3
-
44
-
-
77953229115
-
The mechanism of doublestrand DNA break repair by the nonhomologous DNA end-joining pathway
-
Lieber MR. 2010 The mechanism of doublestrand DNA break repair by the nonhomologous DNA end-joining pathway. Annu. Rev. Biochem. 79, 181-211. (doi: 10.1146/annurev.biochem.052308.093131)
-
(2010)
Annu. Rev. Biochem
, vol.79
, pp. 181-211
-
-
Lieber, M.R.1
-
45
-
-
0035424404
-
Advances in directed protein evolution by recursive genetic recombination: Applications to therapeutic proteins
-
Kurtzman AL, Govindarajan S, Vahle K, Jones JT, Heinrichs V, Patten PA. 2001 Advances in directed protein evolution by recursive genetic recombination: applications to therapeutic proteins. Curr. Opin. Biotech. 12, 361-370. (doi: 10.1016/S0958-1669(00)00228-7)
-
(2001)
Curr. Opin. Biotech
, vol.12
, pp. 361-370
-
-
Kurtzman, A.L.1
Govindarajan, S.2
Vahle, K.3
Jones, J.T.4
Heinrichs, V.5
Patten, P.A.6
-
46
-
-
0034283566
-
High-density mutagenesis by combined DNA shuffling and phage display to assign essential amino acid residues in protein-protein interactions: Application to study structurefunction of plasminogen activation inhibitor 1 (PAI-1)
-
Stoop AA, Jespers L, Lasters I, Eldering E, Pannekoek H. 2000 High-density mutagenesis by combined DNA shuffling and phage display to assign essential amino acid residues in protein-protein interactions: application to study structurefunction of plasminogen activation inhibitor 1 (PAI-1). J. Mol. Biol. 301, 1135-1147. (doi: 10.1006/jmbi.2000.4035)
-
(2000)
J. Mol. Biol
, vol.301
, pp. 1135-1147
-
-
Stoop, A.A.1
Jespers, L.2
Lasters, I.3
Eldering, E.4
Pannekoek, H.5
-
47
-
-
0028050350
-
Rapid evolution of a protein in vitro by DNA shuffling
-
Stemmer WP. 1994 Rapid evolution of a protein in vitro by DNA shuffling. Nature, 370, 389-391. (doi: 10.1038/370389a0)
-
(1994)
Nature
, vol.370
, pp. 389-391
-
-
Stemmer, W.P.1
-
48
-
-
0030048583
-
Construction and evolution of antibody-phage libraries by DNA shuffling
-
Crameri A, Cwirla S, Stemmer WP. 1996 Construction and evolution of antibody-phage libraries by DNA shuffling. Nat. Med. 2, 100-102. (doi: 10.1038/nm0196-100)
-
(1996)
Nat. Med
, vol.2
, pp. 100-102
-
-
Crameri, A.1
Cwirla, S.2
Stemmer, W.P.3
-
49
-
-
0041324888
-
Comparison of directed evolution approaches using the b-glucuronidase model system
-
Rowe LA, Geddie ML, Alexander OB, Matsumura I. 2003A comparison of directed evolution approaches using the b-glucuronidase model system. J. Mol. Biol. 332, 851-860. (doi: 10.1016/S0022-2836 (03)00972-0)
-
(2003)
J. Mol. Biol
, vol.332
, pp. 851-860
-
-
Rowe, L.A.1
Geddie, M.L.2
Alexander, O.B.3
Matsumura, I.4
-
50
-
-
0035969999
-
Directed evolution of ampicillin-resistant activity from a functionally unrelated DNA fragment: A laboratory model of molecular evolution
-
Yano T, Kagamiyama H. 2001 Directed evolution of ampicillin-resistant activity from a functionally unrelated DNA fragment: a laboratory model of molecular evolution. Proc. Natl Acad. Sci. USA, 98, 903-907. (doi: 10.1073/pnas.031442298)
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 903-907
-
-
Yano, T.1
Kagamiyama, H.2
-
51
-
-
84880673487
-
Synthetic shuffling and in vitro selection reveal the rugged adaptive fitness landscape of a kinase ribozyme
-
Curtis EA, Bartel DP. 2013 Synthetic shuffling and in vitro selection reveal the rugged adaptive fitness landscape of a kinase ribozyme. RNA, 19, 1116-1128. (doi: 10.1261/rna.037572.112)
-
(2013)
RNA
, vol.19
, pp. 1116-1128
-
-
Curtis, E.A.1
Bartel, D.P.2
-
52
-
-
84899879902
-
In vivo evolution of a catalytic RNA couples trans-splicing to translation
-
Olson KE, Dolan GF, Müller UF. 2014 In vivo evolution of a catalytic RNA couples trans-splicing to translation. PLoS ONE 9, e86473. (doi: 10.1371/journal.pone.0086473)
-
(2014)
PLoS ONE
, vol.9
, pp. e86473
-
-
Olson, K.E.1
Dolan, G.F.2
Müller, U.F.3
-
53
-
-
79953809654
-
Ribozyme-catalyzed transcription of an active ribozyme
-
Wochner A, Attwater J, Coulson A, Holliger P. 2011 Ribozyme-catalyzed transcription of an active ribozyme. Science, 332, 209-212. (doi: 10.1126/science.1200752)
-
(2011)
Science
, vol.332
, pp. 209-212
-
-
Wochner, A.1
Attwater, J.2
Coulson, A.3
Holliger, P.4
-
54
-
-
84934931117
-
Stepwise error-prone PCR and DNA shuffling changed the pH activity range and product specificity of the cyclodextrin glucanotransferase from an alkaliphilic Bacillus sp
-
Melzer S, Sonnendecker C, Föllner C, Zimmermann W. 2015 Stepwise error-prone PCR and DNA shuffling changed the pH activity range and product specificity of the cyclodextrin glucanotransferase from an alkaliphilic Bacillus sp. FEBS Open Bio. 5, 528-534. (doi: 10.1016/j.fob.2015.06.002)
-
(2015)
FEBS Open Bio
, vol.5
, pp. 528-534
-
-
Melzer, S.1
Sonnendecker, C.2
Föllner, C.3
Zimmermann, W.4
-
55
-
-
17244380498
-
On the conservative nature of intragenic recombination
-
Drummond DA, Silberg JJ, Meyer MM, Wilke CO, Arnold FH. 2005 On the conservative nature of intragenic recombination. Proc. Natl Acad. Sci. USA, 102, 5380-5385. (doi: 10.1073/pnas.0500729102)
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 5380-5385
-
-
Drummond, D.A.1
Silberg, J.J.2
Meyer, M.M.3
Wilke, C.O.4
Arnold, F.H.5
-
56
-
-
24744463589
-
Recombination during in vitro evolution
-
Lehman N, Unrau PJ. 2005 Recombination during in vitro evolution. J. Mol. Evol. 61, 245-252. (doi: 10.1007/s00239-004-0373-4)
-
(2005)
J. Mol. Evol
, vol.61
, pp. 245-252
-
-
Lehman, N.1
Unrau, P.J.2
-
57
-
-
78650745791
-
Complexity through recombination: From chemistry to biology
-
Lehman N, Arenas CD, White WA, Schmidt FJ. 2010 Complexity through recombination: from chemistry to biology. Entropy, 13, 17-37. (doi: 10.3390/e13010017)
-
(2010)
Entropy
, vol.13
, pp. 17-37
-
-
Lehman, N.1
Arenas, C.D.2
White, W.A.3
Schmidt, F.J.4
-
58
-
-
2542473234
-
Replicable and recombinogenic RNAs
-
Chetverin AB. 2004 Replicable and recombinogenic RNAs. FEBS Lett. 567, 35-41. (doi: 10.1016/j. febslet.2004.03.066)
-
(2004)
FEBS Lett
, vol.567
, pp. 35-41
-
-
Chetverin, A.B.1
-
59
-
-
0014107493
-
An extracellular Darwinian experiment with a selfduplicating nucleic acid molecule
-
Mills DR, Peterson RL, Spiegelman S. 1967 An extracellular Darwinian experiment with a selfduplicating nucleic acid molecule. Proc. Natl Acad. Sci. USA, 58, 217-224. (doi: 10.1073/pnas.58.1.217)
-
(1967)
Proc. Natl Acad. Sci. USA
, vol.58
, pp. 217-224
-
-
Mills, D.R.1
Peterson, R.L.2
Spiegelman, S.3
-
60
-
-
0020417286
-
Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena
-
Kruger K, Grabowski PJ, Zaug AJ, Sands J, Gottschling DE, Cech TR. 1982 Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell, 31, 147-157. (doi: 10.1016/0092-8674(82)90414-7)
-
(1982)
Cell
, vol.31
, pp. 147-157
-
-
Kruger, K.1
Grabowski, P.J.2
Zaug, A.J.3
Sands, J.4
Gottschling, D.E.5
Cech, T.R.6
-
61
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada C, Gardiner K, Marsh T, Pace N, Altman S. 1983 The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell, 35, 849-857. (doi: 10.1016/0092-8674(83)90117-4)
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
62
-
-
36849148382
-
Origin of life: The RNA world
-
Gilbert W. 1986 Origin of life: the RNA world. Nature, 319, 618. (doi: 10.1038/319618a0)
-
(1986)
Nature
, vol.319
, pp. 618
-
-
Gilbert, W.1
-
63
-
-
0141631820
-
Nonreplicative homologous RNA recombination: Promiscuous joining of RNA pieces?
-
Gmyl AP, Korshenko SA, Belousov EV, Khitrina EV, Agol VI. 2003 Nonreplicative homologous RNA recombination: promiscuous joining of RNA pieces? RNA, 9, 1221-1231. (doi: 10.1261/rna.5111803)
-
(2003)
RNA
, vol.9
, pp. 1221-1231
-
-
Gmyl, A.P.1
Korshenko, S.A.2
Belousov, E.V.3
Khitrina, E.V.4
Agol, V.I.5
-
64
-
-
67149094711
-
Non-enzymatic template-directed recombination of RNAs
-
Nechaev SY, Lutay AV, Vlassov VV, Zenkova MA. 2009 Non-enzymatic template-directed recombination of RNAs. Int. J. Mol. Sci. 10, 1788-1807. (doi: 10.3390/ijms10041788)
-
(2009)
Int. J. Mol. Sci
, vol.10
, pp. 1788-1807
-
-
Nechaev, S.Y.1
Lutay, A.V.2
Vlassov, V.V.3
Zenkova, M.A.4
-
65
-
-
0031686486
-
Recombination, RNA evolution, and bifunctional RNA molecules isolated through chimeric SELEX
-
Burke DH, Willis JH. 1998 Recombination, RNA evolution, and bifunctional RNA molecules isolated through chimeric SELEX. RNA, 4, 1165. (doi: 10.1017/S1355838298980542)
-
(1998)
RNA
, vol.4
, pp. 1165
-
-
Burke, D.H.1
Willis, J.H.2
-
66
-
-
15444362048
-
Ribozyme motif structure mapped using random recombination and selection
-
Wang QS, Unrau PJ. 2005 Ribozyme motif structure mapped using random recombination and selection. RNA, 11, 404-411. (doi: 10.1261/rna.7238705)
-
(2005)
RNA
, vol.11
, pp. 404-411
-
-
Wang, Q.S.1
Unrau, P.J.2
-
67
-
-
34249744737
-
Nonenzymatic recombination of RNA: Possible mechanism for the formation of novel sequences
-
Lutay AV, Zenkova MA, Vlassov VV. 2007 Nonenzymatic recombination of RNA: possible mechanism for the formation of novel sequences. Chem. Biodivers. 4, 762-767. (doi: 10.1002/cbdv.200790062)
-
(2007)
Chem. Biodivers
, vol.4
, pp. 762-767
-
-
Lutay, A.V.1
Zenkova, M.A.2
Vlassov, V.V.3
-
68
-
-
84874314316
-
Recycling of informational units leads to selection of replicators in a prebiotic soup
-
Vaidya N, Walker SI, Lehman N. 2013 Recycling of informational units leads to selection of replicators in a prebiotic soup. Chem. Biol. 20, 241-252. (doi: 10.1016/j.chembiol.2013.01.007)
-
(2013)
Chem. Biol
, vol.20
, pp. 241-252
-
-
Vaidya, N.1
Walker, S.I.2
Lehman, N.3
-
69
-
-
0025149489
-
Group II intron RNAcatalyzed recombination of RNA in vitro
-
Mörl M, Schmelzer C. 1990 Group II intron RNAcatalyzed recombination of RNA in vitro. Nucleic Acids Res. 18, 6545-6551. (doi: 10.1093/nar/18.22.6545)
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 6545-6551
-
-
Mörl, M.1
Schmelzer, C.2
-
70
-
-
0348136386
-
Generalized RNA-directed recombination of RNA
-
Riley CA, Lehman N. 2003 Generalized RNA-directed recombination of RNA. Chem. Biol., 10, 1233-1243. (doi: 10.1016/j.chembiol.2003.11.015)
-
(2003)
Chem. Biol
, vol.10
, pp. 1233-1243
-
-
Riley, C.A.1
Lehman, N.2
-
71
-
-
27144523459
-
RNA-directed construction of structurally complex and active ligase ribozymes through recombination
-
Hayden EJ, Riley CA, Burton AS, Lehman N. 2005 RNA-directed construction of structurally complex and active ligase ribozymes through recombination. RNA, 11, 1678-1687. (doi: 10.1261/rna.2125305)
-
(2005)
RNA
, vol.11
, pp. 1678-1687
-
-
Hayden, E.J.1
Riley, C.A.2
Burton, A.S.3
Lehman, N.4
-
72
-
-
0035906978
-
RNAcatalyzed RNA polymerization: Accurate and general RNA-templated primer extension
-
Johnston WK, Unrau PJ, Lawrence MS. 2001 RNAcatalyzed RNA polymerization: accurate and general RNA-templated primer extension. Science, 292, 1319-1325. (doi: 10.1126/science.1060786)
-
(2001)
Science
, vol.292
, pp. 1319-1325
-
-
Johnston, W.K.1
Unrau, P.J.2
Lawrence, M.S.3
-
73
-
-
34250860849
-
Selection of an improved RNA polymerase ribozyme with superior extension and fidelity
-
Zaher HS, Unrau PJ. 2007 Selection of an improved RNA polymerase ribozyme with superior extension and fidelity. RNA, 13, 1017-1026. (doi: 10.1261/rna.548807)
-
(2007)
RNA
, vol.13
, pp. 1017-1026
-
-
Zaher, H.S.1
Unrau, P.J.2
-
74
-
-
33947377391
-
A glimpse of biology’s first enzyme
-
Joyce GF. 2007 A glimpse of biology’s first enzyme. Science, 315, 1507-1508. (doi: 10.1126/science.1140736)
-
(2007)
Science
, vol.315
, pp. 1507-1508
-
-
Joyce, G.F.1
-
75
-
-
3042732096
-
Directed evolution of nucleic acid enzymes
-
Joyce GF. 2004 Directed evolution of nucleic acid enzymes. Annu. Rev. Biochem., 73, 791-836. (doi: 10.1146/annurev.biochem.73.011303.073717)
-
(2004)
Annu. Rev. Biochem
, vol.73
, pp. 791-836
-
-
Joyce, G.F.1
-
76
-
-
0038369787
-
A case for the extreme antiquity of recombination
-
Lehman N. 2003 A case for the extreme antiquity of recombination. J. Mol. Evol. 56, 770-777. (doi: 10.1007/s00239-003-2454-1)
-
(2003)
J. Mol. Evol
, vol.56
, pp. 770-777
-
-
Lehman, N.1
-
77
-
-
84945250692
-
The RNA world: 4,000,000,050 years old
-
Lehman N. 2015 The RNA world: 4,000,000,050 years old. Life, 5, 1583-1586. (doi: 10.3390/life5041583)
-
(2015)
Life
, vol.5
, pp. 1583-1586
-
-
Lehman, N.1
-
78
-
-
84922020605
-
From formamide to RNA, the path is tenuous but continuous
-
Pino S, Sponer J, Costanzo G, Saladino R, di Mauro E. 2015 From formamide to RNA, the path is tenuous but continuous. Life, 5, 372-384. (doi: 10.3390/life5010372)
-
(2015)
Life
, vol.5
, pp. 372-384
-
-
Pino, S.1
Sponer, J.2
Costanzo, G.3
Saladino, R.4
di Mauro, E.5
-
79
-
-
84930206675
-
Freeze- thaw cycles as drivers of complex ribozyme assembly
-
Mutschler H, Wochner A, Holliger P. 2015 Freeze- thaw cycles as drivers of complex ribozyme assembly. Nat. Chem. 7, 502-508. (doi: 10.1038/nchem.2251)
-
(2015)
Nat. Chem
, vol.7
, pp. 502-508
-
-
Mutschler, H.1
Wochner, A.2
Holliger, P.3
-
80
-
-
0034667684
-
Plasticity, evolvability, and modularity in RNA
-
Ancel LW, Fontana W. 2000 Plasticity, evolvability, and modularity in RNA. J. Exp. Zool. 288, 242-283. (doi: 10.1002/1097-010X(20001015)288: 3<242:: AID-JEZ5>3.0.CO;2-O)
-
(2000)
J. Exp. Zool
, vol.288
, pp. 242-283
-
-
Ancel, L.W.1
Fontana, W.2
-
81
-
-
2542457425
-
Viroids: The minimal noncoding RNAs with autonomous replication
-
Flores R, Delgado S, Gas ME, Carbonell A, Molina D, Gago S, la Peña De M. 2004 Viroids: the minimal noncoding RNAs with autonomous replication. FEBS Lett. 567, 42-48. (doi: 10.1016/j.febslet.2004.03.118)
-
(2004)
FEBS Lett
, vol.567
, pp. 42-48
-
-
Flores, R.1
Delgado, S.2
Gas, M.E.3
Carbonell, A.4
Molina, D.5
Gago, S.6
la Peña De, M.7
-
82
-
-
17444431570
-
Expression, purification, and characterization of SARS coronavirus RNA polymerase
-
Cheng A, Zhang W, Xie Y, Jiang W, Arnold E, Sarafianos SG, Ding J. 2005 Expression, purification, and characterization of SARS coronavirus RNA polymerase. Virology, 335, 165-176. (doi: 10.1016/j. virol.2005.02.017)
-
(2005)
Virology
, vol.335
, pp. 165-176
-
-
Cheng, A.1
Zhang, W.2
Xie, Y.3
Jiang, W.4
Arnold, E.5
Sarafianos, S.G.6
Ding, J.7
-
83
-
-
0030975364
-
Nonhomologous RNA recombination in a cell-free system: Evidence for a transesterification mechanism guided by secondary structure
-
Chetverin AB, Chetverina HV, Demidenko AA, Ugarov VI. 1997 Nonhomologous RNA recombination in a cell-free system: evidence for a transesterification mechanism guided by secondary structure. Cell, 88, 503-513. (doi: 10.1016/S0092-8674(00)81890-5)
-
(1997)
Cell
, vol.88
, pp. 503-513
-
-
Chetverin, A.B.1
Chetverina, H.V.2
Demidenko, A.A.3
Ugarov, V.I.4
-
84
-
-
0032891998
-
Spontaneous rearrangements in RNA sequences
-
Chetverina HV, Demidenko AA, Ugarov VI, Chetverin AB. 1999 Spontaneous rearrangements in RNA sequences. FEBS Lett. 450, 89-94. (doi: 10.1016/S0014-5793(99)00469-X)
-
(1999)
FEBS Lett
, vol.450
, pp. 89-94
-
-
Chetverina, H.V.1
Demidenko, A.A.2
Ugarov, V.I.3
Chetverin, A.B.4
-
85
-
-
65249110487
-
The dawn of the RNA World: Toward functional complexity through ligation of random RNA oligomers
-
Briones C, Stich M, Manrubia SC. 2009 The dawn of the RNA World: toward functional complexity through ligation of random RNA oligomers. RNA, 15, 743-749. (doi: 10.1261/rna.1488609)
-
(2009)
RNA
, vol.15
, pp. 743-749
-
-
Briones, C.1
Stich, M.2
Manrubia, S.C.3
-
86
-
-
56149124653
-
A recombination-based model for the origin and early evolution of genetic information
-
Lehman N. 2008 A recombination-based model for the origin and early evolution of genetic information. Chem. Biodivers. 5, 1707-1717. (doi: 10.1002/cbdv.200890159)
-
(2008)
Chem. Biodivers
, vol.5
, pp. 1707-1717
-
-
Lehman, N.1
-
87
-
-
84868368844
-
Spontaneous network formation among cooperative RNA replicators
-
Vaidya N, Manapat ML, Chen IA, Xulvi-Brunet R, Hayden EJ, Lehman N. 2012 Spontaneous network formation among cooperative RNA replicators. Nature, 491, 72-77. (doi: 10.1038/nature11549)
-
(2012)
Nature
, vol.491
, pp. 72-77
-
-
Vaidya, N.1
Manapat, M.L.2
Chen, I.A.3
Xulvi-Brunet, R.4
Hayden, E.J.5
Lehman, N.6
-
88
-
-
54149114377
-
Ohno’s model revisited: Measuring the frequency of potentially adaptive mutations under various mutational drifts
-
Bershtein S, Tawfik DS. 2008 Ohno’s model revisited: measuring the frequency of potentially adaptive mutations under various mutational drifts. Mol. Biol. Evol. 25, 2311-2318. (doi: 10.1093/molbev/msn174)
-
(2008)
Mol. Biol. Evol
, vol.25
, pp. 2311-2318
-
-
Bershtein, S.1
Tawfik, D.S.2
-
89
-
-
45849137874
-
Heterogeneous adaptive trajectories of small populations on complex fitness landscapes
-
Rozen DE, Habets MGJL, Handel A, de Visser JAGM. 2008 Heterogeneous adaptive trajectories of small populations on complex fitness landscapes. PLoS ONE 3, e1715. (doi: 10.1371/journal.pone.0001715)
-
(2008)
PLoS ONE
, vol.3
, pp. e1715
-
-
Rozen, D.E.1
Habets, M.G.J.L.2
Handel, A.3
de Visser, J.A.G.M.4
-
90
-
-
84935874404
-
A tortoise-hare pattern seen in adapting structured and unstructured populations suggests a rugged fitness landscape in bacteria
-
Nahum JR, Godfrey-Smith P. 2015 A tortoise-hare pattern seen in adapting structured and unstructured populations suggests a rugged fitness landscape in bacteria. Proc. Natl Acad. Sci. USA, 112, 7530-7535. (doi: 10.1073/pnas.1410631112)
-
(2015)
Proc. Natl Acad. Sci. USA
, vol.112
, pp. 7530-7535
-
-
Nahum, J.R.1
Godfrey-Smith, P.2
-
91
-
-
84971185409
-
The correlation between relatives on the supposition of Mendelian inheritance
-
Fisher RA. 1919 The correlation between relatives on the supposition of Mendelian inheritance. Trans. R. Soc. Edin. 52, 399-433. (doi: 10.1017/s0080456800012163)
-
(1919)
Trans. R. Soc. Edin
, vol.52
, pp. 399-433
-
-
Fisher, R.A.1
-
92
-
-
84908049845
-
Viewing protein fitness landscapes through a next-gen lens
-
Boucher JI, Cote P, Flynn J, Jiang L, Laban A, Mishra P, Roscoe BP, Bolon DNA. 2014 Viewing protein fitness landscapes through a next-gen lens. Genetics, 198, 461-471. (doi: 10.1534/genetics.114.168351)
-
(2014)
Genetics
, vol.198
, pp. 461-471
-
-
Boucher, J.I.1
Cote, P.2
Flynn, J.3
Jiang, L.4
Laban, A.5
Mishra, P.6
Roscoe, B.P.7
Bolon, D.N.A.8
-
93
-
-
84883790268
-
Comprehensive experimental fitness landscape and evolutionary network for small RNA
-
Jiménez JI, Xulvi-Brunet R, Campbell GW, Turk-MacLeod R, Chen IA. 2013 Comprehensive experimental fitness landscape and evolutionary network for small RNA. Proc. Natl Acad. Sci. USA 110, 14 984-14 989. (doi: 10.1073/pnas.1307604110)
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 14 984-14 989
-
-
Jiménez, J.I.1
Xulvi-Brunet, R.2
Campbell, G.W.3
Turk-MacLeod, R.4
Chen, I.A.5
-
94
-
-
79953738501
-
Initial mutations direct alternative pathways of protein evolution
-
Salverda MLM, Dellus E, Gorter FA, Debets AJM, van der Oost J, Hoekstra RF, Tawfik DS, de Visser JAGM. 2011 Initial mutations direct alternative pathways of protein evolution. PLoS Genet. 7, e1001321. (doi: 10.1371/journal.pgen.1001321)
-
(2011)
PLoS Genet
, vol.7
, pp. e1001321
-
-
Salverda, M.L.M.1
Dellus, E.2
Gorter, F.A.3
Debets, A.J.M.4
van der Oost, J.5
Hoekstra, R.F.6
Tawfik, D.S.7
de Visser, J.A.G.M.8
-
95
-
-
84864070833
-
Quantifying the adaptive potential of an antibiotic resistance enzyme
-
Schenk MF, Szendro IG, Krug J, de Visser JAGM. 2012 Quantifying the adaptive potential of an antibiotic resistance enzyme. PLoS Genet. 8, e1002783. (doi: 10.1371/journal.pgen.1002783)
-
(2012)
PLoS Genet
, vol.8
, pp. e1002783
-
-
Schenk, M.F.1
Szendro, I.G.2
Krug, J.3
de Visser, J.A.G.M.4
-
96
-
-
77749270677
-
Ultrahigh-throughput screening in drop-based microfluidics for directed evolution
-
Agresti JJ et al. 2010 Ultrahigh-throughput screening in drop-based microfluidics for directed evolution. Proc. Natl Acad. Sci. USA, 107, 4004-4009. (doi: 10.1073/pnas.0910781107)
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 4004-4009
-
-
Agresti, J.J.1
-
97
-
-
84977648268
-
Lineage tracking for probing heritable phenotypes at single-cell resolution
-
Cottinet D, Condamine F, Bremond N, Griffiths AD, Rainey PB, de Visser JAGM, Baudry J, Bibette J. 2016 Lineage tracking for probing heritable phenotypes at single-cell resolution. PLoS ONE 11, e0152395. (doi: 10.1371/journal.pone.0152395)
-
(2016)
PLoS ONE
, vol.11
, pp. e0152395
-
-
Cottinet, D.1
Condamine, F.2
Bremond, N.3
Griffiths, A.D.4
Rainey, P.B.5
de Visser, J.A.G.M.6
Baudry, J.7
Bibette, J.8
-
98
-
-
0030754926
-
Optimization of DNA shuffling for high fidelity recombination
-
Zhao H, Arnold FH. 1997 Optimization of DNA shuffling for high fidelity recombination. Nucleic Acids Res. 25, 1307-1308. (doi: 10.1093/nar/25.6.1307)
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1307-1308
-
-
Zhao, H.1
Arnold, F.H.2
|