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Volumn 112, Issue 24, 2015, Pages 7530-7535

A tortoise-hare pattern seen in adapting structured and unstructured populations suggests a rugged fitness landscape in bacteria

Author keywords

Adaptive landscape; Experimental evolution; Landscape topography; NK model; Spatial structure

Indexed keywords

ANTIBIOTIC AGENT;

EID: 84935874404     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1410631112     Document Type: Article
Times cited : (77)

References (46)
  • 1
    • 0000907353 scopus 로고
    • The roles of mutation, inbreeding, crossbreeding and selection in evolution
    • Brooklyn Botanic Garden, Brooklyn, NY
    • Wright S (1932) The roles of mutation, inbreeding, crossbreeding and selection in evolution. Proceedings of the Sixth International Congress of Genetics (Brooklyn Botanic Garden, Brooklyn, NY), pp 356-366.
    • (1932) Proceedings of the Sixth International Congress of Genetics , pp. 356-366
    • Wright, S.1
  • 2
    • 79955140810 scopus 로고    scopus 로고
    • Escaping an evolutionary lobster trap: Drug resistance and compensatory mutation in a fluctuating environment
    • Tanaka MM, Valckenborgh F (2011) Escaping an evolutionary lobster trap: Drug resistance and compensatory mutation in a fluctuating environment. Evolution 65(5):1376-1387.
    • (2011) Evolution , vol.65 , Issue.5 , pp. 1376-1387
    • Tanaka, M.M.1    Valckenborgh, F.2
  • 3
    • 84887613917 scopus 로고    scopus 로고
    • Patterns of Epistasis between beneficial mutations in an antibiotic resistance gene
    • Schenk MF, Szendro IG, Salverda MLM, Krug J, de Visser JAGM (2013) Patterns of Epistasis between beneficial mutations in an antibiotic resistance gene. Mol Biol Evol 30(8):1779-1787.
    • (2013) Mol Biol Evol , vol.30 , Issue.8 , pp. 1779-1787
    • Schenk, M.F.1    Szendro, I.G.2    Salverda, M.L.M.3    Krug, J.4    De Visser, J.A.G.M.5
  • 4
    • 79957948242 scopus 로고    scopus 로고
    • Negative epistasis between beneficial mutations in an evolving bacterial population
    • Khan AI, Dinh DM, Schneider D, Lenski RE, Cooper TF (2011) Negative epistasis between beneficial mutations in an evolving bacterial population. Science 332(6034):1193-1196.
    • (2011) Science , vol.332 , Issue.6034 , pp. 1193-1196
    • Khan, A.I.1    Dinh, D.M.2    Schneider, D.3    Lenski, R.E.4    Cooper, T.F.5
  • 6
    • 21044435697 scopus 로고    scopus 로고
    • Perspective: Sign epistasis and genetic constraint on evolutionary trajectories
    • Weinreich DM, Watson RA, Chao L (2005) Perspective: Sign epistasis and genetic constraint on evolutionary trajectories. Evolution 59(6):1165-1174.
    • (2005) Evolution , vol.59 , Issue.6 , pp. 1165-1174
    • Weinreich, D.M.1    Watson, R.A.2    Chao, L.3
  • 8
    • 0000272880 scopus 로고
    • On the probability of fixation of reciprocal translocations
    • Wright S (1941) On the probability of fixation of reciprocal translocations. Am Nat 75(761):513-522.
    • (1941) Am Nat , vol.75 , Issue.761 , pp. 513-522
    • Wright, S.1
  • 9
    • 0025227253 scopus 로고
    • Phase Three of Wright's Shifting-Balance Theory
    • Crow JF, Engels WR, Denniston C (1990) Phase Three of Wright's Shifting-Balance Theory. Evolution 44(2):233-247.
    • (1990) Evolution , vol.44 , Issue.2 , pp. 233-247
    • Crow, J.F.1    Engels, W.R.2    Denniston, C.3
  • 10
    • 0000428314 scopus 로고
    • On the spread of new gene combinations in the third phase of Wright's shifting-balance
    • Barton NH (1992) On the spread of new gene combinations in the third phase of Wright's shifting-balance. Evolution 46(2):551-557.
    • (1992) Evolution , vol.46 , Issue.2 , pp. 551-557
    • Barton, N.H.1
  • 11
    • 0028118185 scopus 로고
    • A simulation of Wright's shifting-balance process: Migration and the three phases
    • Moore FB-G, Tonsor SJ (1994) A simulation of Wright's shifting-balance process: Migration and the three phases. Evolution 48(1):69-80.
    • (1994) Evolution , vol.48 , Issue.1 , pp. 69-80
    • Moore, F.B.-G.1    Tonsor, S.J.2
  • 12
    • 0027325905 scopus 로고
    • Adaptation and the "shifting balance"
    • Barton NH, Rouhani S (1993) Adaptation and the "shifting balance". Genet Res 61(1):57-74.
    • (1993) Genet Res , vol.61 , Issue.1 , pp. 57-74
    • Barton, N.H.1    Rouhani, S.2
  • 13
    • 84927973195 scopus 로고    scopus 로고
    • Quantifying the role of population subdivision in evolution on rugged fitness landscapes
    • Bitbol A-F, Schwab DJ (2014) Quantifying the role of population subdivision in evolution on rugged fitness landscapes. PLOS Comput Biol 10(8):e1003778.
    • (2014) PLOS Comput Biol , vol.10 , Issue.8
    • Bitbol, A.-F.1    Schwab, D.J.2
  • 14
    • 0032411854 scopus 로고    scopus 로고
    • A spatially explicit stochastic model demonstrates the feasibility of Wright's shifting balance theory
    • Peck SL, Ellner SP, Gould F (1998) A spatially explicit stochastic model demonstrates the feasibility of Wright's shifting balance theory. Evolution 52(6):1834-1839.
    • (1998) Evolution , vol.52 , Issue.6 , pp. 1834-1839
    • Peck, S.L.1    Ellner, S.P.2    Gould, F.3
  • 15
    • 0029073540 scopus 로고
    • Population structure, fitness surfaces, and linkage in the shifting balance process
    • Bergman A, Goldstein DB, Holsinger KE, Feldman MW (1995) Population structure, fitness surfaces, and linkage in the shifting balance process. Genet Res 66(1):85-92.
    • (1995) Genet Res , vol.66 , Issue.1 , pp. 85-92
    • Bergman, A.1    Goldstein, D.B.2    Holsinger, K.E.3    Feldman, M.W.4
  • 16
    • 85086251350 scopus 로고    scopus 로고
    • Intermediate migration yields optimal adaptation in structured, asexual populations
    • Available at Accessed May 27, 2014
    • Covert A, Wilke CO (2014) Intermediate migration yields optimal adaptation in structured, asexual populations. bioRxiv. Available at www.biorxiv.org/content/early/2014/04/04/003897. Accessed May 27, 2014.
    • (2014) bioRxiv
    • Covert, A.1    Wilke, C.O.2
  • 17
    • 0030844574 scopus 로고    scopus 로고
    • Perspective: A critique of Sewall Wright's shifting balance theory of evolution
    • Coyne JA, Barton NH, Turelli M (1997) Perspective: A critique of Sewall Wright's shifting balance theory of evolution. Evolution 51(3):643-671.
    • (1997) Evolution , vol.51 , Issue.3 , pp. 643-671
    • Coyne, J.A.1    Barton, N.H.2    Turelli, M.3
  • 18
    • 0034066186 scopus 로고    scopus 로고
    • The ongoing synthesis: A reply to Coyne, Barton, and Turelli
    • Goodnight CJ, Wade MJ (2000) The ongoing synthesis: A reply to Coyne, Barton, and Turelli. Evolution 54(1):317-324.
    • (2000) Evolution , vol.54 , Issue.1 , pp. 317-324
    • Goodnight, C.J.1    Wade, M.J.2
  • 19
    • 0034124337 scopus 로고    scopus 로고
    • Is Wright's shifting balance process important in evolution?
    • Coyne JA, Barton NH, Turelli M (2000) Is Wright's shifting balance process important in evolution? Evolution 54(1):306-317.
    • (2000) Evolution , vol.54 , Issue.1 , pp. 306-317
    • Coyne, J.A.1    Barton, N.H.2    Turelli, M.3
  • 20
    • 0023647382 scopus 로고
    • Towards a general theory of adaptive walks on rugged landscapes
    • Kauffman S, Levin S (1987) Towards a general theory of adaptive walks on rugged landscapes. J Theor Biol 128(1):11-45.
    • (1987) J Theor Biol , vol.128 , Issue.1 , pp. 11-45
    • Kauffman, S.1    Levin, S.2
  • 21
    • 0024803111 scopus 로고
    • The NK model of rugged fitness landscapes and its application to maturation of the immune response
    • Kauffman SA, Weinberger ED (1989) The NK model of rugged fitness landscapes and its application to maturation of the immune response. J Theor Biol 141(2):211-245.
    • (1989) J Theor Biol , vol.141 , Issue.2 , pp. 211-245
    • Kauffman, S.A.1    Weinberger, E.D.2
  • 22
    • 82955229552 scopus 로고    scopus 로고
    • Impact of epistasis and pleiotropy on evolutionary adaptation
    • Østman B, Hintze A, Adami C (2012) Impact of epistasis and pleiotropy on evolutionary adaptation. Proc R Soc Lond B Biol Sci 279(1727):247-256.
    • (2012) Proc R Soc Lond B Biol Sci , vol.279 , Issue.1727 , pp. 247-256
    • Østman, B.1    Hintze, A.2    Adami, C.3
  • 23
    • 84861677599 scopus 로고    scopus 로고
    • Population subdivision and adaptation in asexual populations of Saccharomyces cerevisiae
    • Kryazhimskiy S, Rice DP, Desai MM (2012) Population subdivision and adaptation in asexual populations of Saccharomyces cerevisiae. Evolution 66(6):1931-1941.
    • (2012) Evolution , vol.66 , Issue.6 , pp. 1931-1941
    • Kryazhimskiy, S.1    Rice, D.P.2    Desai, M.M.3
  • 24
    • 84859257158 scopus 로고    scopus 로고
    • Exploring the complexity of the HIV-1 fitness landscape
    • Kouyos RD, et al. (2012) Exploring the complexity of the HIV-1 fitness landscape. PLoS Genet 8(3):e1002551.
    • (2012) PLoS Genet , vol.8 , Issue.3
    • Kouyos, R.D.1
  • 25
    • 68549127130 scopus 로고    scopus 로고
    • Exploring the effect of sex on empirical fitness landscapes
    • de Visser JAGM, Park SC, Krug J (2009) Exploring the effect of sex on empirical fitness landscapes. Am Nat 174(Suppl 1):S15-S30.
    • (2009) Am Nat , vol.174 , pp. S15-S30
    • De Visser, J.A.G.M.1    Park, S.C.2    Krug, J.3
  • 26
    • 80054924877 scopus 로고    scopus 로고
    • Adaptive landscapes in evolving populations of Pseudomonas fluorescens
    • Melnyk AH, Kassen R (2011) Adaptive landscapes in evolving populations of Pseudomonas fluorescens. Evolution 65(11):3048-3059.
    • (2011) Evolution , vol.65 , Issue.11 , pp. 3048-3059
    • Melnyk, A.H.1    Kassen, R.2
  • 27
    • 0028598147 scopus 로고
    • Evidence for multiple adaptive peaks from populations of bacteria evolving in a structured habitat
    • Korona R, Nakatsu CH, Forney LJ, Lenski RE (1994) Evidence for multiple adaptive peaks from populations of bacteria evolving in a structured habitat. Proc Natl Acad Sci USA 91(19):9037-9041.
    • (1994) Proc Natl Acad Sci USA , vol.91 , Issue.19 , pp. 9037-9041
    • Korona, R.1    Nakatsu, C.H.2    Forney, L.J.3    Lenski, R.E.4
  • 28
    • 27144538817 scopus 로고    scopus 로고
    • The biochemical architecture of an ancient adaptive landscape
    • Lunzer M, Miller SP, Felsheim R, Dean AM (2005) The biochemical architecture of an ancient adaptive landscape. Science 310(5747):499-501.
    • (2005) Science , vol.310 , Issue.5747 , pp. 499-501
    • Lunzer, M.1    Miller, S.P.2    Felsheim, R.3    Dean, A.M.4
  • 29
    • 33645666942 scopus 로고    scopus 로고
    • Darwinian evolution can follow only very few mutational paths to fitter proteins
    • Weinreich DM, Delaney NF, Depristo MA, Hartl DL (2006) Darwinian evolution can follow only very few mutational paths to fitter proteins. Science 312(5770):111-114.
    • (2006) Science , vol.312 , Issue.5770 , pp. 111-114
    • Weinreich, D.M.1    Delaney, N.F.2    Depristo, M.A.3    Hartl, D.L.4
  • 30
    • 79957958115 scopus 로고    scopus 로고
    • Diminishing returns epistasis among beneficial mutations decelerates adaptation
    • Chou H-H, Chiu H-C, Delaney NF, Segrè D, Marx CJ (2011) Diminishing returns epistasis among beneficial mutations decelerates adaptation. Science 332(6034):1190-1192.
    • (2011) Science , vol.332 , Issue.6034 , pp. 1190-1192
    • Chou, H.-H.1    Chiu, H.-C.2    Delaney, N.F.3    Segrè, D.4    Marx, C.J.5
  • 32
    • 84943817322 scopus 로고
    • Error detecting and error correcting codes
    • Hamming RW (1950) Error detecting and error correcting codes. Bell Syst Tech J 29(2):147-160.
    • (1950) Bell Syst Tech J , vol.29 , Issue.2 , pp. 147-160
    • Hamming, R.W.1
  • 34
    • 0032870940 scopus 로고    scopus 로고
    • The biological cost of antibiotic resistance
    • Andersson DI, Levin BR (1999) The biological cost of antibiotic resistance. Curr Opin Microbiol 2(5):489-493.
    • (1999) Curr Opin Microbiol , vol.2 , Issue.5 , pp. 489-493
    • Andersson, D.I.1    Levin, B.R.2
  • 35
    • 0034089028 scopus 로고    scopus 로고
    • Compensatory mutations, antibiotic resistance and the population genetics of adaptive evolution in bacteria
    • Levin BR, Perrot V, Walker N (2000) Compensatory mutations, antibiotic resistance and the population genetics of adaptive evolution in bacteria. Genetics 154(3):985-997.
    • (2000) Genetics , vol.154 , Issue.3 , pp. 985-997
    • Levin, B.R.1    Perrot, V.2    Walker, N.3
  • 36
    • 0033830225 scopus 로고    scopus 로고
    • The cost of antibiotic resistance from a bacterial perspective
    • Björkman J, Andersson DI (2000) The cost of antibiotic resistance from a bacterial perspective. Drug Resist Updat 3(4):237-245.
    • (2000) Drug Resist Updat , vol.3 , Issue.4 , pp. 237-245
    • Björkman, J.1    Andersson, D.I.2
  • 37
    • 0035029364 scopus 로고    scopus 로고
    • Biological cost and compensatory evolution in fusidic acid-resistant Staphylococcus aureus
    • Nagaev I, Björkman J, Andersson DI, Hughes D (2001) Biological cost and compensatory evolution in fusidic acid-resistant Staphylococcus aureus. Mol Microbiol 40(2):433-439.
    • (2001) Mol Microbiol , vol.40 , Issue.2 , pp. 433-439
    • Nagaev, I.1    Björkman, J.2    Andersson, D.I.3    Hughes, D.4
  • 38
    • 0014043528 scopus 로고
    • Mathematical optimization: Are there abstract limits on natural selection?
    • Bossert W (1967) Mathematical optimization: Are there abstract limits on natural selection? Wistar Inst Symp Monogr 5:35-46.
    • (1967) Wistar Inst Symp Monogr , vol.5 , pp. 35-46
    • Bossert, W.1
  • 40
    • 0031210972 scopus 로고    scopus 로고
    • Parallel genetic programming and its application to trading model induction
    • Oussaidène M, Chopard B, Pictet OV, Tomassini M (1997) Parallel genetic programming and its application to trading model induction. Parallel Comput 23(8):1183-1198.
    • (1997) Parallel Comput , vol.23 , Issue.8 , pp. 1183-1198
    • Oussaidène, M.1    Chopard, B.2    Pictet, O.V.3    Tomassini, M.4
  • 41
    • 33847658312 scopus 로고    scopus 로고
    • Sub-population genetic algorithm with mining gene structures for multiobjective flowshop scheduling problems
    • Chang P-C, Chen S-H, Liu C-H (2007) Sub-population genetic algorithm with mining gene structures for multiobjective flowshop scheduling problems. Expert Syst Appl 33(3):762-771.
    • (2007) Expert Syst Appl , vol.33 , Issue.3 , pp. 762-771
    • Chang, P.-C.1    Chen, S.-H.2    Liu, C.-H.3
  • 42
    • 0036808672 scopus 로고    scopus 로고
    • Parallelism and evolutionary algorithms
    • Alba E, Tomassini M (2002) Parallelism and evolutionary algorithms. IEEE Trans Evol Comput 6(5):443-462.
    • (2002) IEEE Trans Evol Comput , vol.6 , Issue.5 , pp. 443-462
    • Alba, E.1    Tomassini, M.2
  • 44
    • 0025614728 scopus 로고
    • Analysis of the tsx gene, which encodes a nucleoside-specific channel-forming protein (Tsx) in the outer membrane of Escherichia coli
    • Bremer E, Middendorf A, Martinussen J, Valentin-Hansen P (1990) Analysis of the tsx gene, which encodes a nucleoside-specific channel-forming protein (Tsx) in the outer membrane of Escherichia coli. Gene 96(1):59-65.
    • (1990) Gene , vol.96 , Issue.1 , pp. 59-65
    • Bremer, E.1    Middendorf, A.2    Martinussen, J.3    Valentin-Hansen, P.4
  • 45
    • 0032885253 scopus 로고    scopus 로고
    • The phenotypic and fitness effects of colicin resistance in Escherichia coli K-12
    • Feldgarden M, Riley MA (1999) The phenotypic and fitness effects of colicin resistance in Escherichia coli K-12. Evolution 53(4):1019-1027.
    • (1999) Evolution , vol.53 , Issue.4 , pp. 1019-1027
    • Feldgarden, M.1    Riley, M.A.2
  • 46
    • 84917686994 scopus 로고    scopus 로고
    • Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq
    • Deatherage DE, Barrick JE (2014) Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol Biol 1151:165-188.
    • (2014) Methods Mol Biol , vol.1151 , pp. 165-188
    • Deatherage, D.E.1    Barrick, J.E.2


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