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Volumn 11, Issue 11, 2005, Pages 1678-1687

RNA-directed construction of structurally complex and active ligase ribozymes through recombination

Author keywords

Azoarcus; Catalytic RNA; Ligase; Recombination; Ribozymes

Indexed keywords

LIGASE; OLIGORIBONUCLEOTIDE; RIBOZYME; RNA;

EID: 27144523459     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2125305     Document Type: Article
Times cited : (33)

References (26)
  • 1
    • 3042848954 scopus 로고    scopus 로고
    • Crystal structure of a self-splicing group I intron with both exons
    • Adams, P.L., Stahley, M.R., Kosek, A.B., Wang, J., and Strobel, S.A. 2004. Crystal structure of a self-splicing group I intron with both exons. Nature 430: 45-50.
    • (2004) Nature , vol.430 , pp. 45-50
    • Adams, P.L.1    Stahley, M.R.2    Kosek, A.B.3    Wang, J.4    Strobel, S.A.5
  • 2
    • 0027488624 scopus 로고
    • Isolation of new ribozymes from a large pool of random sequences
    • Bartel, D.P. and Szostak, J.W. 1993. Isolation of new ribozymes from a large pool of random sequences. Science 261: 1411-1418.
    • (1993) Science , vol.261 , pp. 1411-1418
    • Bartel, D.P.1    Szostak, J.W.2
  • 3
    • 0002128756 scopus 로고
    • Tris(hydroxymethyl)aminomethane - A useful secondary pH standard
    • Bates, R.G. and Robinson, R.A. 1973. Tris(hydroxymethyl)aminomethane - A useful secondary pH standard. Anal. Chem. 45: 420.
    • (1973) Anal. Chem. , vol.45 , pp. 420
    • Bates, R.G.1    Robinson, R.A.2
  • 4
    • 0037168445 scopus 로고    scopus 로고
    • Ribozyme-catalyzed excision of targeted sequences from within RNAs
    • Bell, M.A., Johnson, A.K., and Testa, S.M. 2002. Ribozyme-catalyzed excision of targeted sequences from within RNAs. Biochemistry 41: 15327-15333.
    • (2002) Biochemistry , vol.41 , pp. 15327-15333
    • Bell, M.A.1    Johnson, A.K.2    Testa, S.M.3
  • 5
    • 0034696587 scopus 로고    scopus 로고
    • Kinetic framework for ligation by an efficient RNA ligase ribozyme
    • Bergman, N.H., Johnston, W.K., and Bartel, D.P. 2000. Kinetic framework for ligation by an efficient RNA ligase ribozyme. Biochemistry 39: 3115-3123.
    • (2000) Biochemistry , vol.39 , pp. 3115-3123
    • Bergman, N.H.1    Johnston, W.K.2    Bartel, D.P.3
  • 6
    • 1642499418 scopus 로고    scopus 로고
    • The three-dimensional architecture of the class I ligase ribozyme
    • Bergman, N.H., Lau, N.C., Lehnert, V., Westhof, E., and Bartel, D.P. 2004. The three-dimensional architecture of the class I ligase ribozyme. RNA 10: 176-184.
    • (2004) RNA , vol.10 , pp. 176-184
    • Bergman, N.H.1    Lau, N.C.2    Lehnert, V.3    Westhof, E.4    Bartel, D.P.5
  • 7
    • 0029093855 scopus 로고
    • The secondary structure and sequence optimization of an RNA ligase ribozyme
    • Ekland, E.H. and Bartel, D.P. 1995. The secondary structure and sequence optimization of an RNA ligase ribozyme. Nucleic Acids Res. 23: 3231-3238.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3231-3238
    • Ekland, E.H.1    Bartel, D.P.2
  • 8
    • 0029147392 scopus 로고
    • Structurally complex and highly active RNA ligases derived from random RNA sequences
    • Ekland, E.H., Szostak, J.W., and Bartel, D.P. 1995. Structurally complex and highly active RNA ligases derived from random RNA sequences. Science 269: 364-370.
    • (1995) Science , vol.269 , pp. 364-370
    • Ekland, E.H.1    Szostak, J.W.2    Bartel, D.P.3
  • 10
    • 0031670461 scopus 로고    scopus 로고
    • Enthalpy and heat capacity changes for the proton dissociation of various buffer components in 0.1 M potassium chloride
    • Fukada, H. and Takahashi, K. 1998. Enthalpy and heat capacity changes for the proton dissociation of various buffer components in 0.1 M potassium chloride. Protein. Struct. Funct. Genet. 33: 159-166.
    • (1998) Protein. Struct. Funct. Genet. , vol.33 , pp. 159-166
    • Fukada, H.1    Takahashi, K.2
  • 11
    • 0025085590 scopus 로고
    • Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site
    • Herschlag, D. and Cech, T.R. 1990. Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site. Biochemistry 29: 10159-10171.
    • (1990) Biochemistry , vol.29 , pp. 10159-10171
    • Herschlag, D.1    Cech, T.R.2
  • 12
    • 0035906978 scopus 로고    scopus 로고
    • RNA-catalyzed RNA polymerization: Accurate and general RNA-templated primer extension
    • Johnston, W.K., Unrau, P.J., Lawrence, M.S., Glasner, M.E., and Bartel, D.P. 2001. RNA-catalyzed RNA polymerization: Accurate and general RNA-templated primer extension. Science 292: 1319-1325.
    • (2001) Science , vol.292 , pp. 1319-1325
    • Johnston, W.K.1    Unrau, P.J.2    Lawrence, M.S.3    Glasner, M.E.4    Bartel, D.P.5
  • 13
    • 0042191838 scopus 로고    scopus 로고
    • A modular, bifunctional RNA that integrates itself into a target RNA
    • Kumar, R.M. and Joyce, G.F. 2003. A modular, bifunctional RNA that integrates itself into a target RNA. Proc. Natl. Acad. Sci. 100: 9738-9743.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 9738-9743
    • Kumar, R.M.1    Joyce, G.F.2
  • 14
    • 0032732707 scopus 로고    scopus 로고
    • Characterization of the Azoarcus ribozyme: Tight binding to guanosine and substrate by an unusually small group I ribozyme
    • Kuo, L.Y., Davidson, L.A., and Pico, S. 1999. Characterization of the Azoarcus ribozyme: Tight binding to guanosine and substrate by an unusually small group I ribozyme. Biochim. Biophys. Acta 1489: 281-292.
    • (1999) Biochim. Biophys. Acta , vol.1489 , pp. 281-292
    • Kuo, L.Y.1    Davidson, L.A.2    Pico, S.3
  • 15
    • 14344253887 scopus 로고    scopus 로고
    • Metal ion coordination to 2′ functionality of guanosine mediates substrate-guanosine coupling in group I ribozymes: Implications for conserved role of metal ions and for variability in RNA folding in ribozyme catalysis
    • Kuo, L., Perara, N., and Tarpo, S. 2004. Metal ion coordination to 2′ functionality of guanosine mediates substrate-guanosine coupling in group I ribozymes: Implications for conserved role of metal ions and for variability in RNA folding in ribozyme catalysis. Inorg. Chim. Acta 357: 3934-3942.
    • (2004) Inorg. Chim. Acta , vol.357 , pp. 3934-3942
    • Kuo, L.1    Perara, N.2    Tarpo, S.3
  • 16
    • 0036009338 scopus 로고    scopus 로고
    • RNA-catalyzed RNA ligation on an external RNA template
    • McGinness, K.E. and Joyce, G.F. 2002. RNA-catalyzed RNA ligation on an external RNA template. Chem. Biol. 9: 297-307.
    • (2002) Chem. Biol. , vol.9 , pp. 297-307
    • McGinness, K.E.1    Joyce, G.F.2
  • 17
    • 0025149489 scopus 로고
    • Group II intron RNA-catalyzed recombination of RNA in vitro
    • Mörl, M. and Schmelzer, C. 1990. Group II intron RNA-catalyzed recombination of RNA in vitro. Nucleic Acids Res. 18: 6545-6551.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6545-6551
    • Mörl, M.1    Schmelzer, C.2
  • 18
    • 0026599998 scopus 로고
    • Self-splicing introns in tRNA genes of widely divergent bacteria
    • Reinhold-Hurek, B. and Shub, D.A. 1992. Self-splicing introns in tRNA genes of widely divergent bacteria. Nature 357: 173-176.
    • (1992) Nature , vol.357 , pp. 173-176
    • Reinhold-Hurek, B.1    Shub, D.A.2
  • 19
    • 33847090084 scopus 로고
    • Acid-base properties of tris(hydroxymethyl)aminomethane (Tris) buffers in seawater from 5 to 40°C
    • Remette, R.W., Culberson, C.H., and Bates, R.G. 1977. Acid-base properties of tris(hydroxymethyl)aminomethane (Tris) buffers in seawater from 5 to 40°C. Anal. Chem. 49: 867-870.
    • (1977) Anal. Chem. , vol.49 , pp. 867-870
    • Remette, R.W.1    Culberson, C.H.2    Bates, R.G.3
  • 20
    • 0141921620 scopus 로고    scopus 로고
    • Expanded divalent metal-ion tolerance of evolved ligase ribozymes
    • Riley, C.A. and Lehman, N. 2003a. Expanded divalent metal-ion tolerance of evolved ligase ribozymes. Biochimie 85: 683-689.
    • (2003) Biochimie , vol.85 , pp. 683-689
    • Riley, C.A.1    Lehman, N.2
  • 21
    • 0348136386 scopus 로고    scopus 로고
    • Generalized RNA-directed recombination of RNA
    • _. 2003b. Generalized RNA-directed recombination of RNA. Chem. Biol. 10: 1233-1243.
    • (2003) Chem. Biol. , vol.10 , pp. 1233-1243
  • 22
    • 0033485559 scopus 로고    scopus 로고
    • Non-unity molecular heritability demonstrated by continuous evolution in vitro
    • Schmitt, T. and Lehman, N. 1999. Non-unity molecular heritability demonstrated by continuous evolution in vitro. Chem. Biol. 6: 857-869.
    • (1999) Chem. Biol. , vol.6 , pp. 857-869
    • Schmitt, T.1    Lehman, N.2
  • 23
    • 0027987902 scopus 로고
    • Ribozyme-mediated repair of defective mRNA by targeted, trans-splicing
    • Sullenger, B.A. and Cech, T.R. 1994. Ribozyme-mediated repair of defective mRNA by targeted, trans-splicing. Nature 371: 619-622.
    • (1994) Nature , vol.371 , pp. 619-622
    • Sullenger, B.A.1    Cech, T.R.2
  • 24
    • 0024975570 scopus 로고
    • Reverse self-splicing of the Tetrahymena group I intron: Implication for the directionality of splicing and for intron transposition
    • Woodson, S.A. and Cech, T.R. 1989. Reverse self-splicing of the Tetrahymena group I intron: Implication for the directionality of splicing and for intron transposition. Cell 57: 335-345.
    • (1989) Cell , vol.57 , pp. 335-345
    • Woodson, S.A.1    Cech, T.R.2
  • 25
    • 0030901131 scopus 로고    scopus 로고
    • Continuous in vitro evolution of catalytic function
    • Wright, M.C. and Joyce, G.F. 1997. Continuous in vitro evolution of catalytic function. Science 276: 614-617.
    • (1997) Science , vol.276 , pp. 614-617
    • Wright, M.C.1    Joyce, G.F.2
  • 26
    • 0022649937 scopus 로고
    • The intervening sequence RNA of Tetrahymena is an enzyme
    • Zaug, A.J. and Cech, T.R. 1986. The intervening sequence RNA of Tetrahymena is an enzyme. Science 231: 470-475.
    • (1986) Science , vol.231 , pp. 470-475
    • Zaug, A.J.1    Cech, T.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.