-
2
-
-
35948954244
-
Hepatic stellate cells: protean, multifunctional, and enigmatic cells of the liver
-
Friedman SL. Hepatic stellate cells: protean, multifunctional, and enigmatic cells of the liver. Physiol Rev. 2008;88:125-72.
-
(2008)
Physiol Rev.
, vol.88
, pp. 125-172
-
-
Friedman, S.L.1
-
3
-
-
0041897219
-
Increase in type I and type III collagens in human alcoholic liver cirrhosis
-
Rojkind M, Martinez-Palomo A. Increase in type I and type III collagens in human alcoholic liver cirrhosis. Proc Natl Acad Sci U S A. 1976;73:539-43.
-
(1976)
Proc Natl Acad Sci U S A.
, vol.73
, pp. 539-543
-
-
Rojkind, M.1
Martinez-Palomo, A.2
-
5
-
-
0022632409
-
Cell types involved in collagen and fibronectin production in normal and fibrotic human liver
-
Clement B, Grimaud J-A, Campion J-P, Deugnier Y, Guillouzo A. Cell types involved in collagen and fibronectin production in normal and fibrotic human liver. Hepatology. 1986;6:225-34.
-
(1986)
Hepatology.
, vol.6
, pp. 225-234
-
-
Clement, B.1
Grimaud, J.-A.2
Campion, J.-P.3
Deugnier, Y.4
Guillouzo, A.5
-
6
-
-
0018892253
-
Distribution of basement membrane proteins in normal and fibrotic human liver: collagen type IV, laminin, and fibronectin
-
Hahn E, Wick G, Pencev D, Timpl R. Distribution of basement membrane proteins in normal and fibrotic human liver: collagen type IV, laminin, and fibronectin. Gut. 1980;21:63-71.
-
(1980)
Gut.
, vol.21
, pp. 63-71
-
-
Hahn, E.1
Wick, G.2
Pencev, D.3
Timpl, R.4
-
7
-
-
0028953768
-
Hepatic expression of mature transforming growth factor beta 1 in transgenic mice results in multiple tissue lesions
-
Sanderson N, Factor V, Nagy P, Kopp J, Kondaiah P, Wakefield L, et al. Hepatic expression of mature transforming growth factor beta 1 in transgenic mice results in multiple tissue lesions. Proc Natl Acad Sci U S A. 1995;92:2572-6.
-
(1995)
Proc Natl Acad Sci U S A.
, vol.92
, pp. 2572-2576
-
-
Sanderson, N.1
Factor, V.2
Nagy, P.3
Kopp, J.4
Kondaiah, P.5
Wakefield, L.6
-
8
-
-
0031454239
-
Hepatic fibrosis, glomerulosclerosis, and a lipodystrophy-like syndrome in PEPCK-TGF-beta1 transgenic mice
-
Clouthier DE, Comerford SA, Hammer RE. Hepatic fibrosis, glomerulosclerosis, and a lipodystrophy-like syndrome in PEPCK-TGF-beta1 transgenic mice. J Clin Invest. 1997;100:2697-713.
-
(1997)
J Clin Invest.
, vol.100
, pp. 2697-2713
-
-
Clouthier, D.E.1
Comerford, S.A.2
Hammer, R.E.3
-
10
-
-
84888339170
-
Fate tracing reveals hepatic stellate cells as dominant contributors to liver fibrosis independent of its aetiology
-
Mederacke I, Hsu CC, Troeger JS, Huebener P, Mu X, Dapito DH, et al. Fate tracing reveals hepatic stellate cells as dominant contributors to liver fibrosis independent of its aetiology. Nat Commun. 2013;4:2823.
-
(2013)
Nat Commun.
, vol.4
, pp. 2823
-
-
Mederacke, I.1
Hsu, C.C.2
Troeger, J.S.3
Huebener, P.4
Mu, X.5
Dapito, D.H.6
-
11
-
-
0026537533
-
Isolated hepatic lipocytes and Kupffer cells from normal human liver: morphological and functional characteristics in primary culture
-
Friedman SL, Rockey DC, McGuire RF, Maher JJ, Boyles JK, Yamasaki G. Isolated hepatic lipocytes and Kupffer cells from normal human liver: morphological and functional characteristics in primary culture. Hepatology. 1992;15:234-43.
-
(1992)
Hepatology.
, vol.15
, pp. 234-243
-
-
Friedman, S.L.1
Rockey, D.C.2
McGuire, R.F.3
Maher, J.J.4
Boyles, J.K.5
Yamasaki, G.6
-
12
-
-
24344500807
-
Smad2 and Smad3 play different roles in rat hepatic stellate cell function and alpha-smooth muscle actin organization
-
Uemura M, Swenson ES, Gaça MDA, Giordano FJ, Reiss M, Wells RG. Smad2 and Smad3 play different roles in rat hepatic stellate cell function and alpha-smooth muscle actin organization. Mol Biol Cell. 2005;16:4214-24.
-
(2005)
Mol Biol Cell.
, vol.16
, pp. 4214-4224
-
-
Uemura, M.1
Swenson, E.S.2
Gaça, M.D.A.3
Giordano, F.J.4
Reiss, M.5
Wells, R.G.6
-
13
-
-
84862195154
-
Myofibroblasts revert to an inactive phenotype during regression of liver fibrosis
-
Kisseleva T, Cong M, Paik Y, Scholten D, Jiang C, Benner C, et al. Myofibroblasts revert to an inactive phenotype during regression of liver fibrosis. Proc Natl Acad Sci U S A. 2012;109:9448-53.
-
(2012)
Proc Natl Acad Sci U S A.
, vol.109
, pp. 9448-9453
-
-
Kisseleva, T.1
Cong, M.2
Paik, Y.3
Scholten, D.4
Jiang, C.5
Benner, C.6
-
14
-
-
84866692545
-
Deactivation of hepatic stellate cells during liver fibrosis resolution in mice
-
Troeger JS, Mederacke I, Gwak G-Y, Dapito DH, Mu X, Hsu CC, et al. Deactivation of hepatic stellate cells during liver fibrosis resolution in mice. Gastroenterology. 2012;143:1073-83. e22.
-
(2012)
Gastroenterology
, vol.143
, pp. 1073-1083
-
-
Troeger, J.S.1
Mederacke, I.2
Gwak, G.-Y.3
Dapito, D.H.4
Mu, X.5
Hsu, C.C.6
-
15
-
-
0032586690
-
The role of TGFβ1 in initiating hepatic stellate cell activation in vivo
-
Hellerbrand C, Stefanovic B, Giordano F, Burchardt ER, Brenner DA. The role of TGFβ1 in initiating hepatic stellate cell activation in vivo. J Hepatol. 1999;30:77-87.
-
(1999)
J Hepatol.
, vol.30
, pp. 77-87
-
-
Hellerbrand, C.1
Stefanovic, B.2
Giordano, F.3
Burchardt, E.R.4
Brenner, D.A.5
-
16
-
-
0033109090
-
TGF-beta 1 in liver fibrosis: an inducible transgenic mouse model to study liver fibrogenesis
-
Kanzler S, Lohse AW, Keil A, Henninger J, Dienes HP, Schirmacher P, et al. TGF-beta 1 in liver fibrosis: an inducible transgenic mouse model to study liver fibrogenesis. Am J Physiol Gastrointest Liver Physiol. 1999;276:G1059-1068.
-
(1999)
Am J Physiol Gastrointest Liver Physiol.
, vol.276
, pp. G1059-1068
-
-
Kanzler, S.1
Lohse, A.W.2
Keil, A.3
Henninger, J.4
Dienes, H.P.5
Schirmacher, P.6
-
17
-
-
0038374866
-
Conditional tetracycline-regulated expression of TGF-beta1 in liver of transgenic mice leads to reversible intermediary fibrosis
-
Ueberham E, Löw R, Ueberham U, Schönig K, Bujard H, Gebhardt R. Conditional tetracycline-regulated expression of TGF-beta1 in liver of transgenic mice leads to reversible intermediary fibrosis. Hepatology. 2003;37:1067-78.
-
(2003)
Hepatology.
, vol.37
, pp. 1067-1078
-
-
Ueberham, E.1
Löw, R.2
Ueberham, U.3
Schönig, K.4
Bujard, H.5
Gebhardt, R.6
-
18
-
-
0025821563
-
Modulation of alpha smooth muscle actin and desmin expression in perisinusoidal cells of normal and diseased human livers
-
Schmitt-Gräff A, Krüger S, Bochard F, Gabbiani G, Denk H. Modulation of alpha smooth muscle actin and desmin expression in perisinusoidal cells of normal and diseased human livers. Am J Pathol. 1991;138:1233-42.
-
(1991)
Am J Pathol.
, vol.138
, pp. 1233-1242
-
-
Schmitt-Gräff, A.1
Krüger, S.2
Bochard, F.3
Gabbiani, G.4
Denk, H.5
-
20
-
-
84878235678
-
Hepatic stellate cells and portal fibroblasts are the major cellular sources of collagens and lysyl oxidases in normal liver and early after injury
-
Perepelyuk M, Terajima M, Wang AY, Georges PC, Janmey PA, Yamauchi M, et al. Hepatic stellate cells and portal fibroblasts are the major cellular sources of collagens and lysyl oxidases in normal liver and early after injury. Am J Physiol Gastrointest Liver Physiol. 2013;304:G605-14.
-
(2013)
Am J Physiol Gastrointest Liver Physiol.
, vol.304
, pp. G605-G614
-
-
Perepelyuk, M.1
Terajima, M.2
Wang, A.Y.3
Georges, P.C.4
Janmey, P.A.5
Yamauchi, M.6
-
21
-
-
84892622834
-
Reversibility of liver fibrosis and inactivation of fibrogenic myofibroblasts
-
Liu X, Xu J, Brenner DA, Kisseleva T. Reversibility of liver fibrosis and inactivation of fibrogenic myofibroblasts. Curr Pathobiol Rep. 2013;1:209-14.
-
(2013)
Curr Pathobiol Rep.
, vol.1
, pp. 209-214
-
-
Liu, X.1
Xu, J.2
Brenner, D.A.3
Kisseleva, T.4
-
22
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, et al. Landscape of transcription in human cells. Nature. 2012;489:101-8.
-
(2012)
Nature.
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
-
23
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
Rinn JL, Chang HY. Genome regulation by long noncoding RNAs. Annu Rev Biochem. 2012;81:145-66.
-
(2012)
Annu Rev Biochem.
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
24
-
-
84891798006
-
NONCODEv4: exploring the world of long non-coding RNA genes
-
Xie C, Yuan J, Li H, Li M, Zhao G, Bu D, et al. NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res. 2014;42(Database issue):D98-103.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.DATABASE ISSUE
, pp. D98-103
-
-
Xie, C.1
Yuan, J.2
Li, H.3
Li, M.4
Zhao, G.5
Bu, D.6
-
25
-
-
0026007719
-
Localization of the X inactivation centre on the human X chromosome in Xq13
-
Brown CJ, Lafreniere RG, Powers VE, Sebastio G, Ballabio A, Pettigrew AL, et al. Localization of the X inactivation centre on the human X chromosome in Xq13. Nature. 1991;349:82-4.
-
(1991)
Nature.
, vol.349
, pp. 82-84
-
-
Brown, C.J.1
Lafreniere, R.G.2
Powers, V.E.3
Sebastio, G.4
Ballabio, A.5
Pettigrew, A.L.6
-
26
-
-
55349109963
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
-
Zhao J, Sun BK, Erwin JA, Song J-J, Lee JT. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science. 2008;322:750-6.
-
(2008)
Science.
, vol.322
, pp. 750-756
-
-
Zhao, J.1
Sun, B.K.2
Erwin, J.A.3
Song, J.-J.4
Lee, J.T.5
-
27
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A. 2009;106:11667-72.
-
(2009)
Proc Natl Acad Sci U S A.
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
-
28
-
-
84872135457
-
Control of somatic tissue differentiation by the long non-coding RNA TINCR
-
Kretz M, Siprashvili Z, Chu C, Webster DE, Zehnder A, Qu K, et al. Control of somatic tissue differentiation by the long non-coding RNA TINCR. Nature. 2013;493:231-5.
-
(2013)
Nature.
, vol.493
, pp. 231-235
-
-
Kretz, M.1
Siprashvili, Z.2
Chu, C.3
Webster, D.E.4
Zehnder, A.5
Qu, K.6
-
29
-
-
84890659939
-
Scaffold function of long non-coding RNA HOTAIR in protein ubiquitination
-
Yoon J-H, Abdelmohsen K, Kim J, Yang X, Martindale JL, Tominaga-Yamanaka K, et al. Scaffold function of long non-coding RNA HOTAIR in protein ubiquitination. Nat Commun. 2013;4:2939.
-
(2013)
Nat Commun.
, vol.4
, pp. 2939
-
-
Yoon, J.-H.1
Abdelmohsen, K.2
Kim, J.3
Yang, X.4
Martindale, J.L.5
Tominaga-Yamanaka, K.6
-
30
-
-
84899486799
-
The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation
-
Wang P, Xue Y, Han Y, Lin L, Wu C, Xu S, et al. The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation. Science. 2014;344:310-3.
-
(2014)
Science.
, vol.344
, pp. 310-313
-
-
Wang, P.1
Xue, Y.2
Han, Y.3
Lin, L.4
Wu, C.5
Xu, S.6
-
31
-
-
84885740857
-
Targeted disruption of Hotair leads to homeotic transformation and gene derepression
-
Li L, Liu B, Wapinski OL, Tsai M-C, Qu K, Zhang J, et al. Targeted disruption of Hotair leads to homeotic transformation and gene derepression. Cell Rep. 2013;5:3-12.
-
(2013)
Cell Rep.
, vol.5
, pp. 3-12
-
-
Li, L.1
Liu, B.2
Wapinski, O.L.3
Tsai, M.-C.4
Qu, K.5
Zhang, J.6
-
32
-
-
84891757415
-
Multiple knockout mouse models reveal lincRNAs are required for life and brain development
-
Sauvageau M, Goff LA, Lodato S, Bonev B, Groff AF, Gerhardinger C, et al. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. Elife. 2013;2:1-24.
-
(2013)
Elife.
, vol.2
, pp. 1-24
-
-
Sauvageau, M.1
Goff, L.A.2
Lodato, S.3
Bonev, B.4
Groff, A.F.5
Gerhardinger, C.6
-
33
-
-
84873300214
-
Braveheart, a long noncoding RNA required for cardiovascular lineage commitment
-
Klattenhoff CA, Scheuermann JC, Surface LE, Bradley RK, Fields PA, Steinhauser ML, et al. Braveheart, a long noncoding RNA required for cardiovascular lineage commitment. Cell. 2013;152:570-83.
-
(2013)
Cell.
, vol.152
, pp. 570-583
-
-
Klattenhoff, C.A.1
Scheuermann, J.C.2
Surface, L.E.3
Bradley, R.K.4
Fields, P.A.5
Steinhauser, M.L.6
-
34
-
-
84902437938
-
Long noncoding RNAs are spatially correlated with transcription factors and regulate lung development
-
Herriges MJ, Swarr DT, Morley MP, Rathi KS, Peng T, Stewart KM, et al. Long noncoding RNAs are spatially correlated with transcription factors and regulate lung development. Genes Dev. 2014;28:1363-79.
-
(2014)
Genes Dev.
, vol.28
, pp. 1363-1379
-
-
Herriges, M.J.1
Swarr, D.T.2
Morley, M.P.3
Rathi, K.S.4
Peng, T.5
Stewart, K.M.6
-
35
-
-
84881478367
-
A long noncoding RNA mediates both activation and repression of immune response genes
-
Carpenter S, Aiello D, Atianand MK, Ricci EP, Gandhi P, Hall LL, et al. A long noncoding RNA mediates both activation and repression of immune response genes. Science. 2013;341:789-92.
-
(2013)
Science.
, vol.341
, pp. 789-792
-
-
Carpenter, S.1
Aiello, D.2
Atianand, M.K.3
Ricci, E.P.4
Gandhi, P.5
Hall, L.L.6
-
36
-
-
84908020927
-
A long noncoding RNA protects the heart from pathological hypertrophy
-
Han P, Li W, Lin C-H, Yang J, Shang C, Nuernberg ST, et al. A long noncoding RNA protects the heart from pathological hypertrophy. Nature. 2014;514:102-6.
-
(2014)
Nature
, vol.514
, pp. 102-106
-
-
Han, P.1
Li, W.2
Lin, C.-H.3
Yang, J.4
Shang, C.5
Nuernberg, S.T.6
-
37
-
-
84880154515
-
Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer
-
Du Z, Fei T, Verhaak RGW, Su Z, Zhang Y, Brown M, et al. Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer. Nat Struct Mol Biol. 2013;20:908-13.
-
(2013)
Nat Struct Mol Biol.
, vol.20
, pp. 908-913
-
-
Du, Z.1
Fei, T.2
Verhaak, R.G.W.3
Su, Z.4
Zhang, Y.5
Brown, M.6
-
38
-
-
70149123708
-
Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain
-
Ponjavic J, Oliver PL, Lunter G, Ponting CP. Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain. PLoS Genet. 2009;5:e1000617.
-
(2009)
PLoS Genet.
, vol.5
, pp. e1000617
-
-
Ponjavic, J.1
Oliver, P.L.2
Lunter, G.3
Ponting, C.P.4
-
39
-
-
33846223294
-
Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA
-
Panzitt K, Tschernatsch MMO, Guelly C, Moustafa T, Stradner M, Strohmaier HM, et al. Characterization of HULC, a novel gene with striking up-regulation in hepatocellular carcinoma, as noncoding RNA. Gastroenterology. 2007;132:330-42.
-
(2007)
Gastroenterology.
, vol.132
, pp. 330-342
-
-
Panzitt, K.1
Tschernatsch, M.M.O.2
Guelly, C.3
Moustafa, T.4
Stradner, M.5
Strohmaier, H.M.6
-
40
-
-
33846950027
-
A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas
-
Lin R, Maeda S, Liu C, Karin M, Edgington TS. A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas. Oncogene. 2007;26:851-8.
-
(2007)
Oncogene.
, vol.26
, pp. 851-858
-
-
Lin, R.1
Maeda, S.2
Liu, C.3
Karin, M.4
Edgington, T.S.5
-
41
-
-
79551674253
-
Expression and functional role of a transcribed noncoding RNA with an ultraconserved element in hepatocellular carcinoma
-
Braconi C, Valeri N, Kogure T, Gasparini P, Huang N, Nuovo GJ, et al. Expression and functional role of a transcribed noncoding RNA with an ultraconserved element in hepatocellular carcinoma. Proc Natl Acad Sci U S A. 2011;108:786-91.
-
(2011)
Proc Natl Acad Sci U S A.
, vol.108
, pp. 786-791
-
-
Braconi, C.1
Valeri, N.2
Kogure, T.3
Gasparini, P.4
Huang, N.5
Nuovo, G.J.6
-
42
-
-
80055046798
-
Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans
-
Yang F, Zhang L, Huo X, Yuan J, Xu D, Yuan S, et al. Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans. Hepatology. 2011;54:1679-89.
-
(2011)
Hepatology.
, vol.54
, pp. 1679-1689
-
-
Yang, F.1
Zhang, L.2
Huo, X.3
Yuan, J.4
Xu, D.5
Yuan, S.6
-
43
-
-
79955836034
-
Overexpression of long non-coding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation
-
Yang Z, Zhou L, Wu L-M, Lai M-C, Xie H-Y, Zhang F, et al. Overexpression of long non-coding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation. Ann Surg Oncol. 2011;18:1243-50.
-
(2011)
Ann Surg Oncol.
, vol.18
, pp. 1243-1250
-
-
Yang, Z.1
Zhou, L.2
Wu, L.-M.3
Lai, M.-C.4
Xie, H.-Y.5
Zhang, F.6
-
44
-
-
84870530823
-
Long noncoding RNA associated with microvascular invasion in hepatocellular carcinoma promotes angiogenesis and serves as a predictor for hepatocellular carcinoma patients' poor recurrence-free survival after hepatectomy
-
Yuan S-X, Yang F, Yang Y, Tao Q-F, Zhang J, Huang G, et al. Long noncoding RNA associated with microvascular invasion in hepatocellular carcinoma promotes angiogenesis and serves as a predictor for hepatocellular carcinoma patients' poor recurrence-free survival after hepatectomy. Hepatology. 2012;56:2231-41.
-
(2012)
Hepatology.
, vol.56
, pp. 2231-2241
-
-
Yuan, S.-X.1
Yang, F.2
Yang, Y.3
Tao, Q.-F.4
Zhang, J.5
Huang, G.6
-
45
-
-
84897438456
-
Modulation of hypoxia-signaling pathways by extracellular linc-RoR
-
Takahashi K, Yan IK, Haga H, Patel T. Modulation of hypoxia-signaling pathways by extracellular linc-RoR. J Cell Sci. 2014;127:1585-94.
-
(2014)
J Cell Sci
, vol.127
, pp. 1585-1594
-
-
Takahashi, K.1
Yan, I.K.2
Haga, H.3
Patel, T.4
-
46
-
-
84896710254
-
Long noncoding RNA HOTTIP/HOXA13 expression is associated with disease progression and predicts outcome in hepatocellular carcinoma patients
-
Quagliata L, Matter MS, Piscuoglio S, Arabi L, Ruiz C, Procino A, et al. Long noncoding RNA HOTTIP/HOXA13 expression is associated with disease progression and predicts outcome in hepatocellular carcinoma patients. Hepatology. 2014;59:911-23.
-
(2014)
Hepatology.
, vol.59
, pp. 911-923
-
-
Quagliata, L.1
Matter, M.S.2
Piscuoglio, S.3
Arabi, L.4
Ruiz, C.5
Procino, A.6
-
47
-
-
84927692286
-
Long non-coding RNA HOTTIP is frequently up-regulated in hepatocellular carcinoma and is targeted by tumour suppressive miR-125b
-
Tsang FHC, Au SLK, Wei L, Fan DNY, Lee JMF, Wong CCL, et al. Long non-coding RNA HOTTIP is frequently up-regulated in hepatocellular carcinoma and is targeted by tumour suppressive miR-125b. Liver Int. 2015;35:1597-606.
-
(2015)
Liver Int
, vol.35
, pp. 1597-1606
-
-
Tsang, F.H.C.1
Au, S.L.K.2
Wei, L.3
Fan, D.N.Y.4
Lee, J.M.F.5
Wong, C.C.L.6
-
48
-
-
84904795250
-
Epigenetics in liver disease
-
Mann DA. Epigenetics in liver disease. Hepatology. 2014;60:1418-25.
-
(2014)
Hepatology.
, vol.60
, pp. 1418-1425
-
-
Mann, D.A.1
-
49
-
-
84872825450
-
Long non-coding RNA MALAT-1 overexpression predicts tumor recurrence of hepatocellular carcinoma after liver transplantation
-
Lai M, Yang Z, Zhou L, Zhu Q, Xie H, Zhang F, et al. Long non-coding RNA MALAT-1 overexpression predicts tumor recurrence of hepatocellular carcinoma after liver transplantation. Med Oncol. 2012;29:1810-6.
-
(2012)
Med Oncol.
, vol.29
, pp. 1810-1816
-
-
Lai, M.1
Yang, Z.2
Zhou, L.3
Zhu, Q.4
Xie, H.5
Zhang, F.6
-
50
-
-
84887441210
-
Extracellular vesicle-mediated transfer of a novel long noncoding RNA TUC339: a mechanism of intercellular signaling in human hepatocellular cancer
-
Kogure T, Yan IK, Lin W-L, Patel T. Extracellular vesicle-mediated transfer of a novel long noncoding RNA TUC339: a mechanism of intercellular signaling in human hepatocellular cancer. Genes Cancer. 2013;4:261-72.
-
(2013)
Genes Cancer.
, vol.4
, pp. 261-272
-
-
Kogure, T.1
Yan, I.K.2
Lin, W.-L.3
Patel, T.4
-
51
-
-
84881027023
-
Long noncoding RNAs associated with liver regeneration 1 accelerates hepatocyte proliferation during liver regeneration by activating Wnt/β-catenin signaling
-
Xu D, Yang F, Yuan J, Zhang L, Bi H, Zhou C, et al. Long noncoding RNAs associated with liver regeneration 1 accelerates hepatocyte proliferation during liver regeneration by activating Wnt/β-catenin signaling. Hepatology. 2013;58:739-51.
-
(2013)
Hepatology.
, vol.58
, pp. 739-751
-
-
Xu, D.1
Yang, F.2
Yuan, J.3
Zhang, L.4
Bi, H.5
Zhou, C.6
-
52
-
-
84908053101
-
Inhibitory effects of long noncoding RNA MEG3 on hepatic stellate cells activation and liver fibrogenesis
-
He Y, Wu Y-T, Huang C, Meng X-M, Ma T-T, Wu B-M, et al. Inhibitory effects of long noncoding RNA MEG3 on hepatic stellate cells activation and liver fibrogenesis. Biochim Biophys Acta. 2014;1842(11):2204-15.
-
(2014)
Biochim Biophys Acta
, vol.1842
, Issue.11
, pp. 2204-2215
-
-
He, Y.1
Wu, Y.-T.2
Huang, C.3
Meng, X.-M.4
Ma, T.-T.5
Wu, B.-M.6
-
53
-
-
84947776036
-
Long non-coding RNA growth arrest-specific transcript 5 (GAS5) inhibits liver fibrogenesis through a mechanism of competing endogenous RNA
-
Yu F, Zheng J, Mao Y, Dong P, Lu Z, Li G, et al. Long non-coding RNA growth arrest-specific transcript 5 (GAS5) inhibits liver fibrogenesis through a mechanism of competing endogenous RNA. J Biol Chem. 2015;290:28286-98.
-
(2015)
J Biol Chem.
, vol.290
, pp. 28286-28298
-
-
Yu, F.1
Zheng, J.2
Mao, Y.3
Dong, P.4
Lu, Z.5
Li, G.6
-
54
-
-
81855183267
-
microRNA-29 can regulate expression of the long non-coding RNA gene MEG3 in hepatocellular cancer
-
Braconi C, Kogure T, Valeri N, Huang N, Nuovo G, Costinean S, et al. microRNA-29 can regulate expression of the long non-coding RNA gene MEG3 in hepatocellular cancer. Oncogene. 2011;30:4750-6.
-
(2011)
Oncogene
, vol.30
, pp. 4750-4756
-
-
Braconi, C.1
Kogure, T.2
Valeri, N.3
Huang, N.4
Nuovo, G.5
Costinean, S.6
-
55
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011;25:1915-27.
-
(2011)
Genes Dev.
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
-
56
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
-
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 2012;22:1775-89.
-
(2012)
Genome Res.
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
-
57
-
-
84879671055
-
Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs
-
Hangauer MJ, Vaughn IW, McManus MT. Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs. PLoS Genet. 2013;9:e1003569.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003569
-
-
Hangauer, M.J.1
Vaughn, I.W.2
McManus, M.T.3
-
58
-
-
84874248583
-
Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells
-
Sigova AA, Mullen AC, Molinie B, Gupta S, Orlando DA, Guenther MG. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. Proc Natl Acad Sci U S A. 2013;110:2876-81.
-
(2013)
Proc Natl Acad Sci U S A.
, vol.110
, pp. 2876-2881
-
-
Sigova, A.A.1
Mullen, A.C.2
Molinie, B.3
Gupta, S.4
Orlando, D.A.5
Guenther, M.G.6
-
60
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 2012;7:562-78.
-
(2012)
Nat Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
-
61
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010;28:511-5.
-
(2010)
Nat Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Baren, M.J.6
-
62
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
Guttman M, Garber M, Levin JZ, Donaghey J, Robinson J, Adiconis X, et al. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat Biotechnol. 2010;28:503-10.
-
(2010)
Nat Biotechnol.
, vol.28
, pp. 503-510
-
-
Guttman, M.1
Garber, M.2
Levin, J.Z.3
Donaghey, J.4
Robinson, J.5
Adiconis, X.6
-
63
-
-
0036079158
-
The Human Genome Browser at UCSC
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, et al. The Human Genome Browser at UCSC. Genome Res. 2002;12:996-1006.
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
-
64
-
-
77952988108
-
A new generation of homology search tools based on probabilistic inference
-
Eddy SR. A new generation of homology search tools based on probabilistic inference. Genome Inform. 2009;23:205-11.
-
(2009)
Genome Inform.
, vol.23
, pp. 205-211
-
-
Eddy, S.R.1
-
65
-
-
79959931985
-
HMMER web server: interactive sequence similarity searching
-
Finn RD, Clements J, Eddy SR. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 2011;39(Web Server issue):W29-37.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.WEB SERVER ISSUE
, pp. W29-37
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
66
-
-
84876020023
-
CPAT: Coding-potential assessment tool using an alignment-free logistic regression model
-
Wang L, Park HJ, Dasari S, Wang S, Kocher J-P, Li W. CPAT: Coding-potential assessment tool using an alignment-free logistic regression model. Nucleic Acids Res. 2013;41:e74.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e74
-
-
Wang, L.1
Park, H.J.2
Dasari, S.3
Wang, S.4
Kocher, J.-P.5
Li, W.6
-
67
-
-
84891782659
-
Pfam: the protein families database
-
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, et al. Pfam: the protein families database. Nucleic Acids Res. 2014;42(Database issue):D222-30.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.DATABASE ISSUE
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
-
68
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9:357-9.
-
(2012)
Nat Methods.
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
69
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9:R137.
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
-
70
-
-
84876216563
-
Master transcription factors and mediator establish super-enhancers at key cell identity genes
-
Whyte WA, Orlando DA, Hnisz D, Abraham BJ, Lin CY, Kagey MH, et al. Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell. 2013;153:307-19.
-
(2013)
Cell.
, vol.153
, pp. 307-319
-
-
Whyte, W.A.1
Orlando, D.A.2
Hnisz, D.3
Abraham, B.J.4
Lin, C.Y.5
Kagey, M.H.6
-
71
-
-
84888015137
-
Super-enhancers in the control of cell identity and disease
-
Hnisz D, Abraham BJ, Lee TI, Lau A, Saint-André V, Sigova AA, et al. Super-enhancers in the control of cell identity and disease. Cell. 2013;155:934-47.
-
(2013)
Cell.
, vol.155
, pp. 934-947
-
-
Hnisz, D.1
Abraham, B.J.2
Lee, T.I.3
Lau, A.4
Saint-André, V.5
Sigova, A.A.6
-
72
-
-
84855539848
-
Targeted RNA sequencing reveals the deep complexity of the human transcriptome
-
Mercer TR, Gerhardt DJ, Dinger ME, Crawford J, Trapnell C, Jeddeloh JA, et al. Targeted RNA sequencing reveals the deep complexity of the human transcriptome. Nat Biotechnol. 2012;30:99-104.
-
(2012)
Nat Biotechnol.
, vol.30
, pp. 99-104
-
-
Mercer, T.R.1
Gerhardt, D.J.2
Dinger, M.E.3
Crawford, J.4
Trapnell, C.5
Jeddeloh, J.A.6
-
73
-
-
84928987900
-
HTSeq--a Python framework to work with high-throughput sequencing data
-
Anders S, Pyl PT, Huber W. HTSeq--a Python framework to work with high-throughput sequencing data. Bioinformatics. 2014;31:166-9.
-
(2014)
Bioinformatics.
, vol.31
, pp. 166-169
-
-
Anders, S.1
Pyl, P.T.2
Huber, W.3
-
74
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014;15:550.
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
75
-
-
84878682420
-
The Genotype-Tissue Expression (GTEx) project
-
Lonsdale J, Thomas J, Salvatore M, Phillips R, Lo E, Shad S, et al. The Genotype-Tissue Expression (GTEx) project. Nat Genet. 2013;45:580-5.
-
(2013)
Nat Genet.
, vol.45
, pp. 580-585
-
-
Lonsdale, J.1
Thomas, J.2
Salvatore, M.3
Phillips, R.4
Lo, E.5
Shad, S.6
-
76
-
-
84855896819
-
Using MCL to extract clusters from networks
-
van Dongen S, Abreu-Goodger C. Using MCL to extract clusters from networks. Methods Mol Biol. 2012;804:281-95.
-
(2012)
Methods Mol Biol.
, vol.804
, pp. 281-295
-
-
Dongen, S.1
Abreu-Goodger, C.2
-
77
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, et al. Integration of biological networks and gene expression data using Cytoscape. Nat Protoc. 2007;2:2366-82.
-
(2007)
Nat Protoc.
, vol.2
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
Workman, C.6
-
78
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009;4:44-57.
-
(2009)
Nat Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
79
-
-
84864000375
-
DAVID-WS: a stateful web service to facilitate gene/protein list analysis
-
Jiao X, Sherman BT, Huang DW, Stephens R, Baseler MW, Lane HC, et al. DAVID-WS: a stateful web service to facilitate gene/protein list analysis. Bioinformatics. 2012;28:1805-6.
-
(2012)
Bioinformatics.
, vol.28
, pp. 1805-1806
-
-
Jiao, X.1
Sherman, B.T.2
Huang, D.W.3
Stephens, R.4
Baseler, M.W.5
Lane, H.C.6
-
80
-
-
84902286789
-
Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes
-
IIott NE, Heward JA, Roux B, Tsitsiou E, Fenwick PS, Lenzi L, et al. Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes. Nat Commun. 2014;5:3979.
-
(2014)
Nat Commun.
, vol.5
, pp. 3979
-
-
IIott, N.E.1
Heward, J.A.2
Roux, B.3
Tsitsiou, E.4
Fenwick, P.S.5
Lenzi, L.6
-
81
-
-
0024314801
-
Maintenance of differentiated phenotype of cultured rat hepatic lipocytes by basement membrane matrix
-
Friedman SL, Roll FJ, Boyles J, Arenson DM, Bissell DM. Maintenance of differentiated phenotype of cultured rat hepatic lipocytes by basement membrane matrix. J Biol Chem. 1989;264:10756-62.
-
(1989)
J Biol Chem.
, vol.264
, pp. 10756-10762
-
-
Friedman, S.L.1
Roll, F.J.2
Boyles, J.3
Arenson, D.M.4
Bissell, D.M.5
-
82
-
-
0036022840
-
Reversal of activation of human myofibroblast-like cells by culture on a basement membrane-like substrate
-
Sohara N, Znoyko I, Levy MT, Trojanowska M, Reuben A. Reversal of activation of human myofibroblast-like cells by culture on a basement membrane-like substrate. J Hepatol. 2002;37:214-21.
-
(2002)
J Hepatol.
, vol.37
, pp. 214-221
-
-
Sohara, N.1
Znoyko, I.2
Levy, M.T.3
Trojanowska, M.4
Reuben, A.5
-
83
-
-
84883496216
-
Predicting long non-coding RNAs using RNA sequencing
-
Ilott NE, Ponting CP. Predicting long non-coding RNAs using RNA sequencing. Methods. 2013;63:50-9.
-
(2013)
Methods.
, vol.63
, pp. 50-59
-
-
Ilott, N.E.1
Ponting, C.P.2
-
84
-
-
84891767394
-
RefSeq: an update on mammalian reference sequences
-
Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, et al. RefSeq: an update on mammalian reference sequences. Nucleic Acids Res. 2014;42(Database issue):D756-63.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.DATABASE ISSUE
, pp. D756-D763
-
-
Pruitt, K.D.1
Brown, G.R.2
Hiatt, S.M.3
Thibaud-Nissen, F.4
Astashyn, A.5
Ermolaeva, O.6
-
85
-
-
0347755531
-
The UCSC Table Browser data retrieval tool
-
Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, et al. The UCSC Table Browser data retrieval tool. Nucleic Acids Res. 2004;32(Database issue):D493-6.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.DATABASE ISSUE
, pp. D493-D496
-
-
Karolchik, D.1
Hinrichs, A.S.2
Furey, T.S.3
Roskin, K.M.4
Sugnet, C.W.5
Haussler, D.6
-
86
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA. A chromatin landmark and transcription initiation at most promoters in human cells. Cell. 2007;130:77-88.
-
(2007)
Cell.
, vol.130
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
87
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ, et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci U S A. 2010;107:21931-6.
-
(2010)
Proc Natl Acad Sci U S A.
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
-
88
-
-
84857836107
-
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
-
Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, et al. Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis. Genome Res. 2012;22:577-91.
-
(2012)
Genome Res.
, vol.22
, pp. 577-591
-
-
Pauli, A.1
Valen, E.2
Lin, M.F.3
Garber, M.4
Vastenhouw, N.L.5
Levin, J.Z.6
-
90
-
-
84876928036
-
A vitamin D receptor/SMAD genomic circuit gates hepatic fibrotic response
-
Ding N, Yu RT, Subramaniam N, Sherman MH, Wilson C, Rao R, et al. A vitamin D receptor/SMAD genomic circuit gates hepatic fibrotic response. Cell. 2013;153:601-13.
-
(2013)
Cell.
, vol.153
, pp. 601-613
-
-
Ding, N.1
Yu, R.T.2
Subramaniam, N.3
Sherman, M.H.4
Wilson, C.5
Rao, R.6
-
91
-
-
80155137594
-
Master transcription factors determine cell-type-specific responses to TGF-β signaling
-
Mullen AC, Orlando DA, Newman JJ, Lovén J, Kumar RM, Bilodeau S, et al. Master transcription factors determine cell-type-specific responses to TGF-β signaling. Cell. 2011;147:565-76.
-
(2011)
Cell.
, vol.147
, pp. 565-576
-
-
Mullen, A.C.1
Orlando, D.A.2
Newman, J.J.3
Lovén, J.4
Kumar, R.M.5
Bilodeau, S.6
-
92
-
-
79955550445
-
A user's guide to the encyclopedia of DNA elements (ENCODE)
-
Consortium TEP. A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol. 2011;9:e1001046.
-
(2011)
PLoS Biol.
, vol.9
, pp. e1001046
-
-
Consortium, T.E.P.1
-
93
-
-
38549168494
-
Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
-
Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, et al. Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory. BMC Bioinformatics. 2007;8:299.
-
(2007)
BMC Bioinformatics.
, vol.8
, pp. 299
-
-
Luo, F.1
Yang, Y.2
Zhong, J.3
Gao, H.4
Khan, L.5
Thompson, D.K.6
-
95
-
-
67649205713
-
A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide
-
Wren JD. A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide. Bioinformatics. 2009;25:1694-701.
-
(2009)
Bioinformatics.
, vol.25
, pp. 1694-1701
-
-
Wren, J.D.1
-
96
-
-
77957338440
-
Identification of novel proteins involved in plant cell-wall synthesis based on protein-protein interaction data
-
Zhou C, Yin Y, Dam P, Xu Y. Identification of novel proteins involved in plant cell-wall synthesis based on protein-protein interaction data. J Proteome Res. 2010;9:5025-37.
-
(2010)
J Proteome Res.
, vol.9
, pp. 5025-5037
-
-
Zhou, C.1
Yin, Y.2
Dam, P.3
Xu, Y.4
-
97
-
-
79956010263
-
Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network
-
Liao Q, Liu C, Yuan X, Kang S, Miao R, Xiao H, et al. Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network. Nucleic Acids Res. 2011;39:3864-78.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3864-3878
-
-
Liao, Q.1
Liu, C.2
Yuan, X.3
Kang, S.4
Miao, R.5
Xiao, H.6
-
98
-
-
77649168721
-
A general co-expression network-based approach to gene expression analysis: comparison and applications
-
Ruan J, Dean AK, Zhang W. A general co-expression network-based approach to gene expression analysis: comparison and applications. BMC Systems Biol. 2010;4:8.
-
(2010)
BMC Systems Biol.
, vol.4
, pp. 8
-
-
Ruan, J.1
Dean, A.K.2
Zhang, W.3
-
99
-
-
84875417100
-
Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks
-
Guo X, Gao L, Liao Q, Xiao H, Ma X, Yang X, et al. Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks. Nucleic Acids Res. 2013;41:e35.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e35
-
-
Guo, X.1
Gao, L.2
Liao, Q.3
Xiao, H.4
Ma, X.5
Yang, X.6
-
100
-
-
84896722835
-
Multi-tissue analysis of co-expression networks by higher-order generalized singular value decomposition identifies functionally coherent transcriptional modules
-
Xiao X, Moreno-Moral A, Rotival M, Bottolo L, Petretto E. Multi-tissue analysis of co-expression networks by higher-order generalized singular value decomposition identifies functionally coherent transcriptional modules. PLoS Genet. 2014;10:e1004006.
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004006
-
-
Xiao, X.1
Moreno-Moral, A.2
Rotival, M.3
Bottolo, L.4
Petretto, E.5
-
101
-
-
3042514191
-
Coexpression analysis of human genes across many microarray data sets
-
Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P. Coexpression analysis of human genes across many microarray data sets. Genome Res. 2004;14:1085-94.
-
(2004)
Genome Res.
, vol.14
, pp. 1085-1094
-
-
Lee, H.K.1
Hsu, A.K.2
Sajdak, J.3
Qin, J.4
Pavlidis, P.5
-
103
-
-
84907485104
-
Vitamin D receptor-mediated stromal reprogramming suppresses pancreatitis and enhances pancreatic cancer therapy
-
Sherman MH, Yu RT, Engle DD, Ding N, Atkins AR, Tiriac H, et al. Vitamin D receptor-mediated stromal reprogramming suppresses pancreatitis and enhances pancreatic cancer therapy. Cell. 2014;159:80-93.
-
(2014)
Cell.
, vol.159
, pp. 80-93
-
-
Sherman, M.H.1
Yu, R.T.2
Engle, D.D.3
Ding, N.4
Atkins, A.R.5
Tiriac, H.6
-
104
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim T-K, Hemberg M, Gray JM, Costa AM, Bear DM, Wu J, et al. Widespread transcription at neuronal activity-regulated enhancers. Nature. 2010;465:182-7.
-
(2010)
Nature.
, vol.465
, pp. 182-187
-
-
Kim, T.-K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
-
105
-
-
79961022267
-
Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters
-
Koch F, Fenouil R, Gut M, Cauchy P, Albert TK, Zacarias-Cabeza J, et al. Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters. Nat Struct Mol Biol. 2011;18:956-63.
-
(2011)
Nat Struct Mol Biol.
, vol.18
, pp. 956-963
-
-
Koch, F.1
Fenouil, R.2
Gut, M.3
Cauchy, P.4
Albert, T.K.5
Zacarias-Cabeza, J.6
-
107
-
-
84937203002
-
Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency
-
Cacchiarelli D, Trapnell C, Ziller MJ, Soumillon M, Cesana M, Karnik R, et al. Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency. Cell. 2015;162:412-24.
-
(2015)
Cell.
, vol.162
, pp. 412-424
-
-
Cacchiarelli, D.1
Trapnell, C.2
Ziller, M.J.3
Soumillon, M.4
Cesana, M.5
Karnik, R.6
-
108
-
-
84939171986
-
Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution
-
Cabili MN, Dunagin MC, McClanahan PD, Biaesch A, Padovan-Merhar O, Regev A, et al. Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution. Genome Biol. 2015;16:20.
-
(2015)
Genome Biol.
, vol.16
, pp. 20
-
-
Cabili, M.N.1
Dunagin, M.C.2
McClanahan, P.D.3
Biaesch, A.4
Padovan-Merhar, O.5
Regev, A.6
-
109
-
-
0022919184
-
Transfection of a DNA locus that mediates the conversion of 10T1/2 fibroblasts to myoblasts
-
Lassar AB, Paterson BM, Weintraub H. Transfection of a DNA locus that mediates the conversion of 10T1/2 fibroblasts to myoblasts. Cell. 1986;47:649-56.
-
(1986)
Cell.
, vol.47
, pp. 649-656
-
-
Lassar, A.B.1
Paterson, B.M.2
Weintraub, H.3
-
110
-
-
0029066359
-
GATA-1 reprograms avian myelomonocytic cell lines into eosinophils, thromboblasts, and erythroblasts
-
Kulessa H, Frampton J, Graf T. GATA-1 reprograms avian myelomonocytic cell lines into eosinophils, thromboblasts, and erythroblasts. Genes Dev. 1995;9:1250-62.
-
(1995)
Genes Dev.
, vol.9
, pp. 1250-1262
-
-
Kulessa, H.1
Frampton, J.2
Graf, T.3
-
111
-
-
43149115856
-
PU.1 and C/EBPalpha/beta convert fibroblasts into macrophage-like cells
-
Feng R, Desbordes SC, Xie H, Tillo ES, Pixley F, Stanley ER, et al. PU.1 and C/EBPalpha/beta convert fibroblasts into macrophage-like cells. Proc Natl Acad Sci U S A. 2008;105:6057-62.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 6057-6062
-
-
Feng, R.1
Desbordes, S.C.2
Xie, H.3
Tillo, E.S.4
Pixley, F.5
Stanley, E.R.6
-
112
-
-
33747195353
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
-
Takahashi K, Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell. 2006;126:663-76.
-
(2006)
Cell.
, vol.126
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
-
113
-
-
50049122271
-
PRDM16 controls a brown fat/skeletal muscle switch
-
Seale P, Bjork B, Yang W, Kajimura S, Chin S, Kuang S, et al. PRDM16 controls a brown fat/skeletal muscle switch. Nature. 2008;454:961-7.
-
(2008)
Nature.
, vol.454
, pp. 961-967
-
-
Seale, P.1
Bjork, B.2
Yang, W.3
Kajimura, S.4
Chin, S.5
Kuang, S.6
-
114
-
-
53349178722
-
In vivo reprogramming of adult pancreatic exocrine cells to beta-cells
-
Zhou Q, Brown J, Kanarek A, Rajagopal J, Melton DA. In vivo reprogramming of adult pancreatic exocrine cells to beta-cells. Nature. 2008;455:627-32.
-
(2008)
Nature.
, vol.455
, pp. 627-632
-
-
Zhou, Q.1
Brown, J.2
Kanarek, A.3
Rajagopal, J.4
Melton, D.A.5
-
115
-
-
0019952768
-
Fat-storing cells of the rat liver. Their isolation and purification
-
Knook D, Seffelaar A, de Leeuw AM. Fat-storing cells of the rat liver. Their isolation and purification. Exp Cell Res. 1982;139:468-71.
-
(1982)
Exp Cell Res
, vol.139
, pp. 468-471
-
-
Knook, D.1
Seffelaar, A.2
Leeuw, A.M.3
|