메뉴 건너뛰기




Volumn 9, Issue 10, 2010, Pages 5025-5037

Identification of novel proteins involved in plant cell-wall synthesis based on protein-protein interaction data

Author keywords

Arabidopsis thaliana; biofuel; computational biology; plant cell wall synthesis; protein function prediction; protein protein interaction

Indexed keywords

CELL WALL SYNTHESIS RELATED PROTEIN; POLYSACCHARIDE; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

EID: 77957338440     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr100249c     Document Type: Article
Times cited : (16)

References (101)
  • 1
    • 0034863595 scopus 로고    scopus 로고
    • Molecular biology of the plant cell wall: Searching for the genes that define structure, architecture and dynamics
    • Carpita, N.; Tierney, M.; Campbell, M. Molecular biology of the plant cell wall: searching for the genes that define structure, architecture and dynamics Plant Mol. Biol. 2001, 47 (1-2) 1-5
    • (2001) Plant Mol. Biol. , vol.47 , Issue.1-2 , pp. 1-5
    • Carpita, N.1    Tierney, M.2    Campbell, M.3
  • 2
    • 43849084710 scopus 로고    scopus 로고
    • How the walls come crumbling down: Recent structural biochemistry of plant polysaccharide degradation
    • Gilbert, H. J.; Stalbrand, H.; Brumer, H. How the walls come crumbling down: recent structural biochemistry of plant polysaccharide degradation Curr. Opin. Plant Biol. 2008, 11 (3) 338-48
    • (2008) Curr. Opin. Plant Biol. , vol.11 , Issue.3 , pp. 338-348
    • Gilbert, H.J.1    Stalbrand, H.2    Brumer, H.3
  • 3
    • 43849086853 scopus 로고    scopus 로고
    • Revealing the structural and functional diversity of plant cell walls
    • Knox, J. P. Revealing the structural and functional diversity of plant cell walls Curr. Opin. Plant Biol. 2008, 11 (3) 308-13
    • (2008) Curr. Opin. Plant Biol. , vol.11 , Issue.3 , pp. 308-313
    • Knox, J.P.1
  • 4
    • 43849098246 scopus 로고    scopus 로고
    • Evolution and diversity of green plant cell walls
    • Popper, Z. A. Evolution and diversity of green plant cell walls Curr. Opin. Plant Biol. 2008, 11 (3) 286-92
    • (2008) Curr. Opin. Plant Biol. , vol.11 , Issue.3 , pp. 286-292
    • Popper, Z.A.1
  • 5
    • 44149113708 scopus 로고    scopus 로고
    • Golgi transporters: Opening the gate to cell wall polysaccharide biosynthesis
    • Reyes, F.; Orellana, A. Golgi transporters: opening the gate to cell wall polysaccharide biosynthesis Curr. Opin. Plant Biol. 2008, 11 (3) 244-51
    • (2008) Curr. Opin. Plant Biol. , vol.11 , Issue.3 , pp. 244-251
    • Reyes, F.1    Orellana, A.2
  • 7
    • 49649106060 scopus 로고    scopus 로고
    • Genomics of cellulosic biofuels
    • Rubin, E. M. Genomics of cellulosic biofuels Nature 2008, 454 (7206) 841-5
    • (2008) Nature , vol.454 , Issue.7206 , pp. 841-845
    • Rubin, E.M.1
  • 8
    • 34447310822 scopus 로고    scopus 로고
    • Loosening lignins grip on biofuel production
    • Chapple, C.; Ladisch, M.; Meilan, R. Loosening lignins grip on biofuel production Nat. Biotechnol. 2007, 25 (7) 746-8
    • (2007) Nat. Biotechnol. , vol.25 , Issue.7 , pp. 746-748
    • Chapple, C.1    Ladisch, M.2    Meilan, R.3
  • 9
    • 16544364565 scopus 로고    scopus 로고
    • The Cell Wall Navigator database. A systems-based approach to organism-unrestricted mining of protein families involved in cell wall metabolism
    • discussion 3001
    • Girke, T.; Lauricha, J.; Tran, H.; Keegstra, K.; Raikhel, N. The Cell Wall Navigator database. A systems-based approach to organism-unrestricted mining of protein families involved in cell wall metabolism Plant Physiol. 2004, 136 (2) 3003-8 and discussion 3001
    • (2004) Plant Physiol. , vol.136 , Issue.2 , pp. 3003-3008
    • Girke, T.1    Lauricha, J.2    Tran, H.3    Keegstra, K.4    Raikhel, N.5
  • 11
    • 0034863861 scopus 로고    scopus 로고
    • Golgi enzymes that synthesize plant cell wall polysaccharides: Finding and evaluating candidates in the genomic era
    • Perrin, R.; Wilkerson, C.; Keegstra, K. Golgi enzymes that synthesize plant cell wall polysaccharides: finding and evaluating candidates in the genomic era Plant Mol. Biol. 2001, 47 (1) 115-30
    • (2001) Plant Mol. Biol. , vol.47 , Issue.1 , pp. 115-130
    • Perrin, R.1    Wilkerson, C.2    Keegstra, K.3
  • 12
    • 58149200943 scopus 로고    scopus 로고
    • The Carbohydrate-Active EnZymes database (CAZy): An expert resource for Glycogenomics
    • Cantarel, B. L.; Coutinho, P. M.; Rancurel, C.; Bernard, T.; Lombard, V.; Henrissat, B. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics Nucleic Acids Res. 2009, 37 (Database issue) D233-8
    • (2009) Nucleic Acids Res. , vol.37 , Issue.DATABASE ISSUE , pp. 233-238
    • Cantarel, B.L.1    Coutinho, P.M.2    Rancurel, C.3    Bernard, T.4    Lombard, V.5    Henrissat, B.6
  • 13
    • 16544361856 scopus 로고    scopus 로고
    • A complementary bioinformatics approach to identify potential plant cell wall glycosyltransferase-encoding genes
    • Egelund, J.; Skjot, M.; Geshi, N.; Ulvskov, P.; Petersen, B. L. A complementary bioinformatics approach to identify potential plant cell wall glycosyltransferase-encoding genes Plant Physiol. 2004, 136 (1) 2609-20
    • (2004) Plant Physiol. , vol.136 , Issue.1 , pp. 2609-2620
    • Egelund, J.1    Skjot, M.2    Geshi, N.3    Ulvskov, P.4    Petersen, B.L.5
  • 14
    • 61849129612 scopus 로고    scopus 로고
    • Combination of several bioinformatics approaches for the identification of new putative glycosyltransferases in Arabidopsis
    • Hansen, S. F.; Bettler, E.; Wimmerova, M.; Imberty, A.; Lerouxel, O.; Breton, C. Combination of several bioinformatics approaches for the identification of new putative glycosyltransferases in Arabidopsis J. Proteome Res. 2009, 8 (2) 743-53
    • (2009) J. Proteome Res. , vol.8 , Issue.2 , pp. 743-753
    • Hansen, S.F.1    Bettler, E.2    Wimmerova, M.3    Imberty, A.4    Lerouxel, O.5    Breton, C.6
  • 15
    • 27644451872 scopus 로고    scopus 로고
    • Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics
    • Brown, D. M.; Zeef, L. A.; Ellis, J.; Goodacre, R.; Turner, S. R. Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics Plant Cell 2005, 17 (8) 2281-95
    • (2005) Plant Cell , vol.17 , Issue.8 , pp. 2281-2295
    • Brown, D.M.1    Zeef, L.A.2    Ellis, J.3    Goodacre, R.4    Turner, S.R.5
  • 16
    • 20844445318 scopus 로고    scopus 로고
    • Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets
    • Persson, S.; Wei, H.; Milne, J.; Page, G. P.; Somerville, C. R. Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets Proc. Natl. Acad. Sci. U.S.A. 2005, 102 (24) 8633-8
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , Issue.24 , pp. 8633-8638
    • Persson, S.1    Wei, H.2    Milne, J.3    Page, G.P.4    Somerville, C.R.5
  • 17
    • 33744516386 scopus 로고    scopus 로고
    • Identification and characterization of Arabidopsis thaliana genes involved in xylem secondary cell walls
    • Ryusuke Yokoyama, K. N. Identification and characterization of Arabidopsis thaliana genes involved in xylem secondary cell walls J. Plant Res. 2006, 119, 189-94
    • (2006) J. Plant Res. , vol.119 , pp. 189-194
    • Ryusuke Yokoyama, K.N.1
  • 18
    • 34250654827 scopus 로고    scopus 로고
    • A novel bioinformatics approach identifies candidate genes for the synthesis and feruloylation of arabinoxylan
    • Mitchell, R. A.; Dupree, P.; Shewry, P. R. A novel bioinformatics approach identifies candidate genes for the synthesis and feruloylation of arabinoxylan Plant Physiol. 2007, 144 (1) 43-53
    • (2007) Plant Physiol. , vol.144 , Issue.1 , pp. 43-53
    • Mitchell, R.A.1    Dupree, P.2    Shewry, P.R.3
  • 20
  • 21
    • 0025847827 scopus 로고
    • Use of actin filament and microtubule affinity chromatography to identify proteins that bind to the cytoskeleton
    • Miller, K. G.; Field, C. M.; Alberts, B. M.; Kellogg, D. R. Use of actin filament and microtubule affinity chromatography to identify proteins that bind to the cytoskeleton Methods Enzymol. 1991, 196, 303-19
    • (1991) Methods Enzymol. , vol.196 , pp. 303-319
    • Miller, K.G.1    Field, C.M.2    Alberts, B.M.3    Kellogg, D.R.4
  • 24
    • 38549123986 scopus 로고    scopus 로고
    • AtPID: Arabidopsis thaliana protein interactome database - An integrative platform for plant systems biology
    • Cui, J.; Li, P.; Li, G.; Xu, F.; Zhao, C.; Li, Y.; Yang, Z.; Wang, G.; Yu, Q.; Shi, T. AtPID: Arabidopsis thaliana protein interactome database - an integrative platform for plant systems biology Nucleic Acids Res. 2007, 36 (Database issue) D999-1008
    • (2007) Nucleic Acids Res. , vol.36 , Issue.DATABASE ISSUE , pp. 999-1008
    • Cui, J.1    Li, P.2    Li, G.3    Xu, F.4    Zhao, C.5    Li, Y.6    Yang, Z.7    Wang, G.8    Yu, Q.9    Shi, T.10
  • 25
    • 62349105953 scopus 로고    scopus 로고
    • Thaxtomin A affects CESA-complex density, expression of cell wall genes, cell wall composition, and causes ectopic lignification in Arabidopsis thaliana seedlings
    • Bischoff, V.; Cookson, S. J.; Wu, S.; Scheible, W. R. Thaxtomin A affects CESA-complex density, expression of cell wall genes, cell wall composition, and causes ectopic lignification in Arabidopsis thaliana seedlings J. Exp. Bot. 2009, 60 (3) 955-65
    • (2009) J. Exp. Bot. , vol.60 , Issue.3 , pp. 955-965
    • Bischoff, V.1    Cookson, S.J.2    Wu, S.3    Scheible, W.R.4
  • 28
    • 0346801873 scopus 로고    scopus 로고
    • Etc., the Gene Ontology (GO) database and informatics resource
    • Harris, M. A.; Clark, J.; Ireland, A. etc., The Gene Ontology (GO) database and informatics resource Nucleic Acids Res. 2004, 32 (Database issue) D258-61
    • (2004) Nucleic Acids Res. , vol.32 , Issue.DATABASE ISSUE , pp. 258-261
    • Harris, M.A.1    Clark, J.2    Ireland, A.3
  • 33
    • 0035282660 scopus 로고    scopus 로고
    • How many genes in Arabidopsis come from cyanobacteria? An estimate from 386 protein phylogenies
    • Rujan, T.; Martin, W. How many genes in Arabidopsis come from cyanobacteria? An estimate from 386 protein phylogenies Trends Genet. 2001, 17 (3) 113-20
    • (2001) Trends Genet. , vol.17 , Issue.3 , pp. 113-120
    • Rujan, T.1    Martin, W.2
  • 34
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: Improvement in accuracy of multiple sequence alignment
    • Katoh, K.; Kuma, K.; Toh, H.; Miyata, T. MAFFT version 5: improvement in accuracy of multiple sequence alignment Nucleic Acids Res. 2005, 33 (2) 511-8
    • (2005) Nucleic Acids Res. , vol.33 , Issue.2 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 35
    • 33750736013 scopus 로고    scopus 로고
    • The accuracy of several multiple sequence alignment programs for proteins
    • Nuin, P. A.; Wang, Z.; Tillier, E. R. The accuracy of several multiple sequence alignment programs for proteins BMC Bioinform. 2006, 7, 471
    • (2006) BMC Bioinform. , vol.7 , pp. 471
    • Nuin, P.A.1    Wang, Z.2    Tillier, E.R.3
  • 36
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S.; Gascuel, O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Syst. Biol. 2003, 52 (5) 696-704
    • (2003) Syst. Biol. , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 37
    • 35948931439 scopus 로고    scopus 로고
    • An Arabidopsis gene network based on the graphical Gaussian model
    • Ma, S.; Gong, Q.; Bohnert, H. J. An Arabidopsis gene network based on the graphical Gaussian model Genome Res. 2007, 17 (11) 1614-25
    • (2007) Genome Res. , vol.17 , Issue.11 , pp. 1614-1625
    • Ma, S.1    Gong, Q.2    Bohnert, H.J.3
  • 38
    • 0001025826 scopus 로고
    • Tracing Cell Wall Biogenesis in Intact Cells and Plants: Selective Turnover and Alteration of Soluble and Cell Wall Polysaccharides in Grasses
    • Gibeaut, D. M.; Carpita, N. C. Tracing Cell Wall Biogenesis in Intact Cells and Plants: Selective Turnover and Alteration of Soluble and Cell Wall Polysaccharides in Grasses Plant Physiol. 1991, 97 (2) 551-61
    • (1991) Plant Physiol. , vol.97 , Issue.2 , pp. 551-561
    • Gibeaut, D.M.1    Carpita, N.C.2
  • 39
    • 0032979316 scopus 로고    scopus 로고
    • Gibberellic acid (GA) increases fibre cell differentiation and secondary cell-wall deposition in spring wheat (Triticum aestivum L.) culms
    • Lev-Yadun, S.; Beharav, A.; Di-nur, R.; Abbo, S. Gibberellic acid (GA) increases fibre cell differentiation and secondary cell-wall deposition in spring wheat (Triticum aestivum L.) culms Plant Growth Regul. 1999, 27 (3) 161-65
    • (1999) Plant Growth Regul. , vol.27 , Issue.3 , pp. 161-165
    • Lev-Yadun, S.1    Beharav, A.2    Di-Nur, R.3    Abbo, S.4
  • 40
    • 0242268461 scopus 로고    scopus 로고
    • Predicting protein functions from redundancies in large-scale protein interaction networks
    • Samanta, M. P.; Liang, S. Predicting protein functions from redundancies in large-scale protein interaction networks Proc. Natl. Acad. Sci. U.S.A. 2003, 100 (22) 12579-83
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , Issue.22 , pp. 12579-12583
    • Samanta, M.P.1    Liang, S.2
  • 41
    • 33947252154 scopus 로고    scopus 로고
    • Network-based prediction of protein function
    • Sharan, R.; Ulitsky, I.; Shamir, R. Network-based prediction of protein function Mol. Syst. Biol. 2007, 3, 88
    • (2007) Mol. Syst. Biol. , vol.3 , pp. 88
    • Sharan, R.1    Ulitsky, I.2    Shamir, R.3
  • 42
    • 0035027840 scopus 로고    scopus 로고
    • A novel UDP-glucose transferase is part of the callose synthase complex and interacts with phragmoplastin at the forming cell plate
    • Hong, Z.; Zhang, Z.; Olson, J. M.; Verma, D. P. A novel UDP-glucose transferase is part of the callose synthase complex and interacts with phragmoplastin at the forming cell plate Plant Cell 2001, 13 (4) 769-79
    • (2001) Plant Cell , vol.13 , Issue.4 , pp. 769-779
    • Hong, Z.1    Zhang, Z.2    Olson, J.M.3    Verma, D.P.4
  • 44
    • 33748445836 scopus 로고    scopus 로고
    • Subcellular localization of interacting proteins by bimolecular fluorescence complementation in planta
    • Citovsky, V.; Lee, L. Y.; Vyas, S.; Glick, E.; Chen, M. H.; Vainstein, A.; Gafni, Y.; Gelvin, S. B.; Tzfira, T. Subcellular localization of interacting proteins by bimolecular fluorescence complementation in planta J. Mol. Biol. 2006, 362 (5) 1120-31
    • (2006) J. Mol. Biol. , vol.362 , Issue.5 , pp. 1120-1131
    • Citovsky, V.1    Lee, L.Y.2    Vyas, S.3    Glick, E.4    Chen, M.H.5    Vainstein, A.6    Gafni, Y.7    Gelvin, S.B.8    Tzfira, T.9
  • 46
    • 34250851687 scopus 로고    scopus 로고
    • LOMETS: A local meta-threading-server for protein structure prediction
    • Wu, S.; Zhang, Y. LOMETS: a local meta-threading-server for protein structure prediction Nucleic Acids Res. 2007, 35 (10) 3375-82
    • (2007) Nucleic Acids Res. , vol.35 , Issue.10 , pp. 3375-3382
    • Wu, S.1    Zhang, Y.2
  • 48
    • 27644469149 scopus 로고    scopus 로고
    • Cell adhesion in Arabidopsis thaliana is mediated by ECTOPICALLY PARTING CELLS 1 - A glycosyltransferase (GT64) related to the animal exostosins
    • Singh, S. K.; Eland, C.; Harholt, J.; Scheller, H. V.; Marchant, A. Cell adhesion in Arabidopsis thaliana is mediated by ECTOPICALLY PARTING CELLS 1 - a glycosyltransferase (GT64) related to the animal exostosins Plant J. 2005, 43 (3) 384-97
    • (2005) Plant J. , vol.43 , Issue.3 , pp. 384-397
    • Singh, S.K.1    Eland, C.2    Harholt, J.3    Scheller, H.V.4    Marchant, A.5
  • 49
    • 0012784535 scopus 로고    scopus 로고
    • Crystal structure of an alpha 1,4-N-acetylhexosaminyltransferase (EXTL2), a member of the exostosin gene family involved in heparan sulfate biosynthesis
    • Pedersen, L. C.; Dong, J.; Taniguchi, F.; Kitagawa, H.; Krahn, J. M.; Pedersen, L. G.; Sugahara, K.; Negishi, M. Crystal structure of an alpha 1,4-N-acetylhexosaminyltransferase (EXTL2), a member of the exostosin gene family involved in heparan sulfate biosynthesis J. Biol. Chem. 2003, 278 (16) 14420-8
    • (2003) J. Biol. Chem. , vol.278 , Issue.16 , pp. 14420-14428
    • Pedersen, L.C.1    Dong, J.2    Taniguchi, F.3    Kitagawa, H.4    Krahn, J.M.5    Pedersen, L.G.6    Sugahara, K.7    Negishi, M.8
  • 50
    • 0032493440 scopus 로고    scopus 로고
    • Activity of the yeast MNN1 alpha-1,3-mannosyltransferase requires a motif conserved in many other families of glycosyltransferases
    • Wiggins, C. A.; Munro, S. Activity of the yeast MNN1 alpha-1,3- mannosyltransferase requires a motif conserved in many other families of glycosyltransferases Proc. Natl. Acad. Sci. U.S.A. 1998, 95 (14) 7945-50
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , Issue.14 , pp. 7945-7950
    • Wiggins, C.A.1    Munro, S.2
  • 52
    • 0034706024 scopus 로고    scopus 로고
    • Cell wall sited flavonoids in lisianthus flower petals
    • Markham, K. R.; Ryan, K. G.; Gould, K. S.; Rickards, G. K. Cell wall sited flavonoids in lisianthus flower petals Phytochemistry 2000, 54 (7) 681-7
    • (2000) Phytochemistry , vol.54 , Issue.7 , pp. 681-687
    • Markham, K.R.1    Ryan, K.G.2    Gould, K.S.3    Rickards, G.K.4
  • 53
    • 0034506072 scopus 로고    scopus 로고
    • Glycoside hydrolases and glycosyltransferases. Families, modules, and implications for genomics
    • Henrissat, B.; Davies, G. J. Glycoside hydrolases and glycosyltransferases. Families, modules, and implications for genomics Plant Physiol. 2000, 124 (4) 1515-9
    • (2000) Plant Physiol. , vol.124 , Issue.4 , pp. 1515-1519
    • Henrissat, B.1    Davies, G.J.2
  • 55
    • 58549099871 scopus 로고    scopus 로고
    • Two Leucine-Rich Repeat Receptor Kinases Mediate Signaling, Linking Cell Wall Biosynthesis and ACC Synthase in Arabidopsis
    • Xu, S. L.; Rahman, A.; Baskin, T. I.; Kieber, J. J. Two Leucine-Rich Repeat Receptor Kinases Mediate Signaling, Linking Cell Wall Biosynthesis and ACC Synthase in Arabidopsis Plant Cell 2008, 20 (11) 3065-79
    • (2008) Plant Cell , vol.20 , Issue.11 , pp. 3065-3079
    • Xu, S.L.1    Rahman, A.2    Baskin, T.I.3    Kieber, J.J.4
  • 56
    • 0036047057 scopus 로고    scopus 로고
    • The GOLD domain, a novel protein module involved in Golgi function and secretion
    • Anantharaman, V.; Aravind, L. The GOLD domain, a novel protein module involved in Golgi function and secretion Genome Biol. 2002, 3 (5) research0023
    • (2002) Genome Biol. , vol.3 , Issue.5 , pp. 0023
    • Anantharaman, V.1    Aravind, L.2
  • 58
    • 0038460047 scopus 로고    scopus 로고
    • AraCyc: A biochemical pathway database for Arabidopsis
    • Mueller, L. A.; Zhang, P.; Rhee, S. Y. AraCyc: a biochemical pathway database for Arabidopsis Plant Physiol. 2003, 132 (2) 453-60
    • (2003) Plant Physiol. , vol.132 , Issue.2 , pp. 453-460
    • Mueller, L.A.1    Zhang, P.2    Rhee, S.Y.3
  • 59
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa, M.; Goto, S. KEGG: kyoto encyclopedia of genes and genomes Nucleic Acids Res. 2000, 28 (1) 27-30
    • (2000) Nucleic Acids Res. , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 61
    • 0032082930 scopus 로고    scopus 로고
    • Phenylpropanoid biosynthesis and its regulation
    • Weisshaar, B.; Jenkins, G. I. Phenylpropanoid biosynthesis and its regulation Curr. Opin. Plant Biol. 1998, 1 (3) 251-7
    • (1998) Curr. Opin. Plant Biol. , vol.1 , Issue.3 , pp. 251-257
    • Weisshaar, B.1    Jenkins, G.I.2
  • 62
    • 0035028330 scopus 로고    scopus 로고
    • N-acetylglucosamine and glucosamine-containing arabinogalactan proteins control somatic embryogenesis
    • van Hengel, A. J.; Tadesse, Z.; Immerzeel, P.; Schols, H.; van Kammen, A.; de Vries, S. C. N-acetylglucosamine and glucosamine-containing arabinogalactan proteins control somatic embryogenesis Plant Physiol. 2001, 125 (4) 1880-90
    • (2001) Plant Physiol. , vol.125 , Issue.4 , pp. 1880-1890
    • Van Hengel, A.J.1    Tadesse, Z.2    Immerzeel, P.3    Schols, H.4    Van Kammen, A.5    De Vries, S.C.6
  • 63
    • 70349593722 scopus 로고    scopus 로고
    • Plant Cell Wall Proteomics: Mass Spectrometry Data, a Trove for Research on Protein Structure/Function Relationships
    • Albenne, C.; Canut, H.; Boudart, G.; Zhang, Y.; Clemente, H. S.; Pont-Lezica, R.; Jamet, E. Plant Cell Wall Proteomics: Mass Spectrometry Data, a Trove for Research on Protein Structure/Function Relationships Mol. Plant 2009, 1-13
    • (2009) Mol. Plant , pp. 1-13
    • Albenne, C.1    Canut, H.2    Boudart, G.3    Zhang, Y.4    Clemente, H.S.5    Pont-Lezica, R.6    Jamet, E.7
  • 64
    • 33748630199 scopus 로고    scopus 로고
    • Cross genome comparisons of serine proteases in Arabidopsis and rice
    • Tripathi, L. P.; Sowdhamini, R. Cross genome comparisons of serine proteases in Arabidopsis and rice BMC Genomics 2006, 7, 200
    • (2006) BMC Genomics , vol.7 , pp. 200
    • Tripathi, L.P.1    Sowdhamini, R.2
  • 65
    • 12844259732 scopus 로고    scopus 로고
    • Genome-wide analysis of glucose-6-phosphate dehydrogenases in Arabidopsis
    • Wakao, S.; Benning, C. Genome-wide analysis of glucose-6-phosphate dehydrogenases in Arabidopsis Plant J. 2005, 41 (2) 243-56
    • (2005) Plant J. , vol.41 , Issue.2 , pp. 243-256
    • Wakao, S.1    Benning, C.2
  • 66
    • 33644993733 scopus 로고    scopus 로고
    • Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis
    • Kraft, E.; Stone, S. L.; Ma, L.; Su, N.; Gao, Y.; Lau, O. S.; Deng, X. W.; Callis, J. Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis Plant Physiol. 2005, 139 (4) 1597-611
    • (2005) Plant Physiol. , vol.139 , Issue.4 , pp. 1597-1611
    • Kraft, E.1    Stone, S.L.2    Ma, L.3    Su, N.4    Gao, Y.5    Lau, O.S.6    Deng, X.W.7    Callis, J.8
  • 67
    • 33644825185 scopus 로고    scopus 로고
    • Identification and functional characterization of Arabidopsis PEROXIN4 and the interacting protein PEROXIN22
    • Zolman, B. K.; Monroe-Augustus, M.; Silva, I. D.; Bartel, B. Identification and functional characterization of Arabidopsis PEROXIN4 and the interacting protein PEROXIN22 Plant Cell 2005, 17 (12) 3422-35
    • (2005) Plant Cell , vol.17 , Issue.12 , pp. 3422-3435
    • Zolman, B.K.1    Monroe-Augustus, M.2    Silva, I.D.3    Bartel, B.4
  • 68
    • 18044394093 scopus 로고    scopus 로고
    • Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis
    • Stone, S. L.; Hauksdottir, H.; Troy, A.; Herschleb, J.; Kraft, E.; Callis, J. Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis Plant Physiol. 2005, 137 (1) 13-30
    • (2005) Plant Physiol. , vol.137 , Issue.1 , pp. 13-30
    • Stone, S.L.1    Hauksdottir, H.2    Troy, A.3    Herschleb, J.4    Kraft, E.5    Callis, J.6
  • 71
    • 38949214828 scopus 로고    scopus 로고
    • Specificity of RCN1-mediated protein phosphatase 2A regulation in meristem organization and stress response in roots
    • Blakeslee, J. J.; Zhou, H. W.; Heath, J. T.; Skottke, K. R.; Barrios, J. A.; Liu, S. Y.; DeLong, A. Specificity of RCN1-mediated protein phosphatase 2A regulation in meristem organization and stress response in roots Plant Physiol. 2008, 146 (2) 539-53
    • (2008) Plant Physiol. , vol.146 , Issue.2 , pp. 539-553
    • Blakeslee, J.J.1    Zhou, H.W.2    Heath, J.T.3    Skottke, K.R.4    Barrios, J.A.5    Liu, S.Y.6    Delong, A.7
  • 72
    • 0036914909 scopus 로고    scopus 로고
    • A phytochrome-associated protein phosphatase 2A modulates light signals in flowering time control in Arabidopsis
    • Kim, D. H.; Kang, J. G.; Yang, S. S.; Chung, K. S.; Song, P. S.; Park, C. M. A phytochrome-associated protein phosphatase 2A modulates light signals in flowering time control in Arabidopsis Plant Cell 2002, 14 (12) 3043-56
    • (2002) Plant Cell , vol.14 , Issue.12 , pp. 3043-3056
    • Kim, D.H.1    Kang, J.G.2    Yang, S.S.3    Chung, K.S.4    Song, P.S.5    Park, C.M.6
  • 73
    • 15244350821 scopus 로고    scopus 로고
    • The vacuolar Ca2+-activated channel TPC1 regulates germination and stomatal movement
    • Peiter, E.; Maathuis, F. J.; Mills, L. N.; Knight, H.; Pelloux, J.; Hetherington, A. M.; Sanders, D. The vacuolar Ca2+-activated channel TPC1 regulates germination and stomatal movement Nature 2005, 434 (7031) 404-8
    • (2005) Nature , vol.434 , Issue.7031 , pp. 404-408
    • Peiter, E.1    Maathuis, F.J.2    Mills, L.N.3    Knight, H.4    Pelloux, J.5    Hetherington, A.M.6    Sanders, D.7
  • 74
    • 15944412904 scopus 로고    scopus 로고
    • Activation of the cytochrome P450 gene, CYP72C1, reduces the levels of active brassinosteroids in vivo
    • Nakamura, M.; Satoh, T.; Tanaka, S.; Mochizuki, N.; Yokota, T.; Nagatani, A. Activation of the cytochrome P450 gene, CYP72C1, reduces the levels of active brassinosteroids in vivo J. Exp. Bot. 2005, 56 (413) 833-40
    • (2005) J. Exp. Bot. , vol.56 , Issue.413 , pp. 833-840
    • Nakamura, M.1    Satoh, T.2    Tanaka, S.3    Mochizuki, N.4    Yokota, T.5    Nagatani, A.6
  • 75
    • 0037163398 scopus 로고    scopus 로고
    • Analysis of EF-hand-containing proteins in Arabidopsis
    • Day, I. S.; Reddy, V. S.; Shad Ali, G.; Reddy, A. S. Analysis of EF-hand-containing proteins in Arabidopsis Genome Biol. 2002, 3 (10) RESEARCH0056
    • (2002) Genome Biol. , vol.3 , Issue.10 , pp. 0056
    • Day, I.S.1    Reddy, V.S.2    Shad Ali, G.3    Reddy, A.S.4
  • 76
    • 41549133928 scopus 로고    scopus 로고
    • Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: Homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes
    • Panjabi, P.; Jagannath, A.; Bisht, N. C.; Padmaja, K. L.; Sharma, S.; Gupta, V.; Pradhan, A. K.; Pental, D. Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes BMC Genomics 2008, 9, 113
    • (2008) BMC Genomics , vol.9 , pp. 113
    • Panjabi, P.1    Jagannath, A.2    Bisht, N.C.3    Padmaja, K.L.4    Sharma, S.5    Gupta, V.6    Pradhan, A.K.7    Pental, D.8
  • 77
    • 0037738567 scopus 로고    scopus 로고
    • HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis
    • Bollman, K. M.; Aukerman, M. J.; Park, M. Y.; Hunter, C.; Berardini, T. Z.; Poethig, R. S. HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis Development 2003, 130 (8) 1493-504
    • (2003) Development , vol.130 , Issue.8 , pp. 1493-1504
    • Bollman, K.M.1    Aukerman, M.J.2    Park, M.Y.3    Hunter, C.4    Berardini, T.Z.5    Poethig, R.S.6
  • 78
    • 0035839555 scopus 로고    scopus 로고
    • The Arabidopsis thaliana ABC protein superfamily, a complete inventory
    • Sanchez-Fernandez, R.; Davies, T. G.; Coleman, J. O.; Rea, P. A. The Arabidopsis thaliana ABC protein superfamily, a complete inventory J. Biol. Chem. 2001, 276 (32) 30231-44
    • (2001) J. Biol. Chem. , vol.276 , Issue.32 , pp. 30231-30244
    • Sanchez-Fernandez, R.1    Davies, T.G.2    Coleman, J.O.3    Rea, P.A.4
  • 79
    • 0031051671 scopus 로고    scopus 로고
    • The Arabidopsis ACT11 actin gene is strongly expressed in tissues of the emerging inflorescence, pollen, and developing ovules
    • Huang, S.; An, Y. Q.; McDowell, J. M.; McKinney, E. C.; Meagher, R. B. The Arabidopsis ACT11 actin gene is strongly expressed in tissues of the emerging inflorescence, pollen, and developing ovules Plant Mol. Biol. 1997, 33 (1) 125-39
    • (1997) Plant Mol. Biol. , vol.33 , Issue.1 , pp. 125-139
    • Huang, S.1    An, Y.Q.2    McDowell, J.M.3    McKinney, E.C.4    Meagher, R.B.5
  • 80
    • 15744385479 scopus 로고    scopus 로고
    • The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins
    • Carter, C.; Pan, S.; Zouhar, J.; Avila, E. L.; Girke, T.; Raikhel, N. V. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins Plant Cell 2004, 16 (12) 3285-303
    • (2004) Plant Cell , vol.16 , Issue.12 , pp. 3285-3303
    • Carter, C.1    Pan, S.2    Zouhar, J.3    Avila, E.L.4    Girke, T.5    Raikhel, N.V.6
  • 81
    • 4644359086 scopus 로고    scopus 로고
    • Quantitative trait loci associated with adventitious shoot formation in tissue culture and the program of shoot development in Arabidopsis
    • Lall, S.; Nettleton, D.; DeCook, R.; Che, P.; Howell, S. H. Quantitative trait loci associated with adventitious shoot formation in tissue culture and the program of shoot development in Arabidopsis Genetics 2004, 167 (4) 1883-92
    • (2004) Genetics , vol.167 , Issue.4 , pp. 1883-1892
    • Lall, S.1    Nettleton, D.2    Decook, R.3    Che, P.4    Howell, S.H.5
  • 82
    • 0035692811 scopus 로고    scopus 로고
    • The leucine-rich repeat as a protein recognition motif
    • Kobe, B.; Kajava, A. V. The leucine-rich repeat as a protein recognition motif Curr. Opin. Struct. Biol. 2001, 11 (6) 725-32
    • (2001) Curr. Opin. Struct. Biol. , vol.11 , Issue.6 , pp. 725-732
    • Kobe, B.1    Kajava, A.V.2
  • 84
    • 33745460367 scopus 로고    scopus 로고
    • Integrating membrane transport with male gametophyte development and function through transcriptomics
    • Bock, K. W.; Honys, D.; Ward, J. M.; Padmanaban, S.; Nawrocki, E. P.; Hirschi, K. D.; Twell, D.; Sze, H. Integrating membrane transport with male gametophyte development and function through transcriptomics Plant Physiol. 2006, 140 (4) 1151-68
    • (2006) Plant Physiol. , vol.140 , Issue.4 , pp. 1151-1168
    • Bock, K.W.1    Honys, D.2    Ward, J.M.3    Padmanaban, S.4    Nawrocki, E.P.5    Hirschi, K.D.6    Twell, D.7    Sze, H.8
  • 85
    • 0037424232 scopus 로고    scopus 로고
    • The alpha-helical D1 domain of the tobacco bZIP transcription factor BZI-1 interacts with the ankyrin-repeat protein ANK1 and is important for BZI-1 function, both in auxin signaling and pathogen response
    • Kuhlmann, M.; Horvay, K.; Strathmann, A.; Heinekamp, T.; Fischer, U.; Bottner, S.; Droge-Laser, W. The alpha-helical D1 domain of the tobacco bZIP transcription factor BZI-1 interacts with the ankyrin-repeat protein ANK1 and is important for BZI-1 function, both in auxin signaling and pathogen response J. Biol. Chem. 2003, 278 (10) 8786-94
    • (2003) J. Biol. Chem. , vol.278 , Issue.10 , pp. 8786-8794
    • Kuhlmann, M.1    Horvay, K.2    Strathmann, A.3    Heinekamp, T.4    Fischer, U.5    Bottner, S.6    Droge-Laser, W.7
  • 87
    • 57749104148 scopus 로고    scopus 로고
    • Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes
    • Zhang, Y.; Feng, S.; Chen, F.; Chen, H.; Wang, J.; McCall, C.; Xiong, Y.; Deng, X. W. Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes Plant Cell 2008, 20 (6) 1437-55
    • (2008) Plant Cell , vol.20 , Issue.6 , pp. 1437-1455
    • Zhang, Y.1    Feng, S.2    Chen, F.3    Chen, H.4    Wang, J.5    McCall, C.6    Xiong, Y.7    Deng, X.W.8
  • 88
    • 0034599523 scopus 로고    scopus 로고
    • UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation
    • Lambermon, M. H.; Simpson, G. G.; Wieczorek Kirk, D. A.; Hemmings-Mieszczak, M.; Klahre, U.; Filipowicz, W. UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation EMBO J. 2000, 19 (7) 1638-49
    • (2000) EMBO J. , vol.19 , Issue.7 , pp. 1638-1649
    • Lambermon, M.H.1    Simpson, G.G.2    Wieczorek Kirk, D.A.3    Hemmings-Mieszczak, M.4    Klahre, U.5    Filipowicz, W.6
  • 89
    • 26944438711 scopus 로고    scopus 로고
    • Computational identification of 69 retroposons in Arabidopsis
    • Zhang, Y.; Wu, Y.; Liu, Y.; Han, B. Computational identification of 69 retroposons in Arabidopsis Plant Physiol. 2005, 138 (2) 935-48
    • (2005) Plant Physiol. , vol.138 , Issue.2 , pp. 935-948
    • Zhang, Y.1    Wu, Y.2    Liu, Y.3    Han, B.4
  • 91
    • 19044379862 scopus 로고    scopus 로고
    • Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins
    • Houston, N. L.; Fan, C.; Xiang, J. Q.; Schulze, J. M.; Jung, R.; Boston, R. S. Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins Plant Physiol. 2005, 137 (2) 762-78
    • (2005) Plant Physiol. , vol.137 , Issue.2 , pp. 762-778
    • Houston, N.L.1    Fan, C.2    Xiang, J.Q.3    Schulze, J.M.4    Jung, R.5    Boston, R.S.6
  • 92
    • 0037155853 scopus 로고    scopus 로고
    • Genes encoding calmodulin-binding proteins in the Arabidopsis genome
    • Reddy, V. S.; Ali, G. S.; Reddy, A. S. Genes encoding calmodulin-binding proteins in the Arabidopsis genome J. Biol. Chem. 2002, 277 (12) 9840-52
    • (2002) J. Biol. Chem. , vol.277 , Issue.12 , pp. 9840-9852
    • Reddy, V.S.1    Ali, G.S.2    Reddy, A.S.3
  • 93
    • 33748758712 scopus 로고    scopus 로고
    • SUMO-conjugating and SUMO-deconjugating enzymes from Arabidopsis
    • Colby, T.; Matthai, A.; Boeckelmann, A.; Stuible, H. P. SUMO-conjugating and SUMO-deconjugating enzymes from Arabidopsis Plant Physiol. 2006, 142 (1) 318-32
    • (2006) Plant Physiol. , vol.142 , Issue.1 , pp. 318-332
    • Colby, T.1    Matthai, A.2    Boeckelmann, A.3    Stuible, H.P.4
  • 95
    • 34247210084 scopus 로고    scopus 로고
    • Heterotrimeric G protein signaling in the Arabidopsis unfolded protein response
    • Wang, S.; Narendra, S.; Fedoroff, N. Heterotrimeric G protein signaling in the Arabidopsis unfolded protein response Proc. Natl. Acad. Sci. U.S.A. 2007, 104 (10) 3817-22
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , Issue.10 , pp. 3817-3822
    • Wang, S.1    Narendra, S.2    Fedoroff, N.3
  • 96
    • 2542642407 scopus 로고    scopus 로고
    • Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana
    • Kawaguchi, R.; Girke, T.; Bray, E. A.; Bailey-Serres, J. Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana Plant J. 2004, 38 (5) 823-39
    • (2004) Plant J. , vol.38 , Issue.5 , pp. 823-839
    • Kawaguchi, R.1    Girke, T.2    Bray, E.A.3    Bailey-Serres, J.4
  • 97
    • 0032817558 scopus 로고    scopus 로고
    • Microsomal electron transfer in higher plants: Cloning and heterologous expression of NADH-cytochrome b5 reductase from Arabidopsis
    • Fukuchi-Mizutani, M.; Mizutani, M.; Tanaka, Y.; Kusumi, T.; Ohta, D. Microsomal electron transfer in higher plants: cloning and heterologous expression of NADH-cytochrome b5 reductase from Arabidopsis Plant Physiol. 1999, 119 (1) 353-62
    • (1999) Plant Physiol. , vol.119 , Issue.1 , pp. 353-362
    • Fukuchi-Mizutani, M.1    Mizutani, M.2    Tanaka, Y.3    Kusumi, T.4    Ohta, D.5
  • 98
    • 0029317749 scopus 로고
    • AtJ2, an arabidopsis homolog of Escherichia coli dnaJ
    • Zhou, R.; Kroczynska, B.; Hayman, G. T.; Miernyk, J. A. AtJ2, an arabidopsis homolog of Escherichia coli dnaJ Plant Physiol. 1995, 108 (2) 821-2
    • (1995) Plant Physiol. , vol.108 , Issue.2 , pp. 821-822
    • Zhou, R.1    Kroczynska, B.2    Hayman, G.T.3    Miernyk, J.A.4
  • 99
    • 16744362946 scopus 로고    scopus 로고
    • Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases
    • Dievart, A.; Clark, S. E. Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases Curr. Opin. Plant Biol. 2003, 6 (5) 507-16
    • (2003) Curr. Opin. Plant Biol. , vol.6 , Issue.5 , pp. 507-516
    • Dievart, A.1    Clark, S.E.2
  • 100
    • 24044547087 scopus 로고    scopus 로고
    • Comparative analyses of the gene expression profiles of Arabidopsis intact plant and cultured cells
    • Iwase, A.; Ishii, H.; Aoyagi, H.; Ohme-Takagi, M.; Tanaka, H. Comparative analyses of the gene expression profiles of Arabidopsis intact plant and cultured cells Biotechnol. Lett. 2005, 27 (15) 1097-103
    • (2005) Biotechnol. Lett. , vol.27 , Issue.15 , pp. 1097-1103
    • Iwase, A.1    Ishii, H.2    Aoyagi, H.3    Ohme-Takagi, M.4    Tanaka, H.5
  • 101
    • 0028181441 scopus 로고
    • Hidden Markov models in computational biology. Applications to protein modeling
    • Krogh, A.; Brown, M.; Mian, I. S.; Sjolander, K.; Haussler, D. Hidden Markov models in computational biology. Applications to protein modeling J. Mol. Biol. 1994, 235 (5) 1501-31
    • (1994) J. Mol. Biol. , vol.235 , Issue.5 , pp. 1501-1531
    • Krogh, A.1    Brown, M.2    Mian, I.S.3    Sjolander, K.4    Haussler, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.