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Volumn 56, Issue 1, 2016, Pages 159-172

The Fragment Molecular Orbital Method Reveals New Insight into the Chemical Nature of GPCR-Ligand Interactions

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL ATOMIC STRUCTURE; HYDROGEN BONDS; HYDROPHOBICITY; LIGANDS; MOLECULAR ORBITALS; ORBITAL CALCULATIONS; QUANTUM THEORY;

EID: 84955445390     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/acs.jcim.5b00644     Document Type: Article
Times cited : (98)

References (92)
  • 1
    • 84906933886 scopus 로고    scopus 로고
    • GPCR Structures in Drug Design, Emerging Opportunities with New Structures
    • Tautermann, C. S. GPCR Structures in Drug Design, Emerging Opportunities with New Structures Bioorg. Med. Chem. Lett. 2014, 24, 4073-9 10.1016/j.bmcl.2014.07.009
    • (2014) Bioorg. Med. Chem. Lett. , vol.24 , pp. 4073-4079
    • Tautermann, C.S.1
  • 2
    • 84930868579 scopus 로고    scopus 로고
    • Gpcr Crystal Structures: Medicinal Chemistry in the Pocket
    • Shonberg, J.; Kling, R. C.; Gmeiner, P.; Lober, S. Gpcr Crystal Structures: Medicinal Chemistry in the Pocket Bioorg. Med. Chem. 2015, 23, 3880-906 10.1016/j.bmc.2014.12.034
    • (2015) Bioorg. Med. Chem. , vol.23 , pp. 3880-3906
    • Shonberg, J.1    Kling, R.C.2    Gmeiner, P.3    Lober, S.4
  • 3
    • 84939180100 scopus 로고    scopus 로고
    • From G Protein-Coupled Receptor Structure Resolution to Rational Drug Design
    • Jazayeri, A.; Dias, J. M.; Marshall, F. H. From G Protein-Coupled Receptor Structure Resolution to Rational Drug Design J. Biol. Chem. 2015, 290, 19489-95 10.1074/jbc.R115.668251
    • (2015) J. Biol. Chem. , vol.290 , pp. 19489-19495
    • Jazayeri, A.1    Dias, J.M.2    Marshall, F.H.3
  • 4
    • 84947484341 scopus 로고    scopus 로고
    • New Paradigms in GPCR Drug Discovery
    • Jacobson, K. A. New Paradigms in GPCR Drug Discovery Biochem. Pharmacol. 2015, 98, 541 10.1016/j.bcp.2015.08.085
    • (2015) Biochem. Pharmacol. , vol.98 , pp. 541
    • Jacobson, K.A.1
  • 5
    • 77953631827 scopus 로고    scopus 로고
    • A Medicinal Chemist's Guide to Molecular Interactions
    • Bissantz, C.; Kuhn, B.; Stahl, M. A Medicinal Chemist's Guide to Molecular Interactions J. Med. Chem. 2010, 53, 5061-84 10.1021/jm100112j
    • (2010) J. Med. Chem. , vol.53 , pp. 5061-5084
    • Bissantz, C.1    Kuhn, B.2    Stahl, M.3
  • 7
    • 84950303075 scopus 로고    scopus 로고
    • Accurate Calculation of the Absolute Free Energy of Binding for Drug Molecules
    • Aldeghi, M.; Heifetz, A.; Bodkin, M. J.; Knapp, S.; Biggin, P. C. Accurate Calculation of the Absolute Free Energy of Binding for Drug Molecules Chemical Science 2016, 10.1039/C5SC02678D
    • (2016) Chemical Science
    • Aldeghi, M.1    Heifetz, A.2    Bodkin, M.J.3    Knapp, S.4    Biggin, P.C.5
  • 8
    • 33751517368 scopus 로고    scopus 로고
    • Critical Assessment of Quantum Mechanics Based Energy Restraints in Protein Crystal Structure Refinement
    • Yu, N.; Li, X.; Cui, G.; Hayik, S. A.; Merz, K. M., 2nd Critical Assessment of Quantum Mechanics Based Energy Restraints in Protein Crystal Structure Refinement Protein Sci. 2006, 15, 2773-84 10.1110/ps.062343206
    • (2006) Protein Sci. , vol.15 , pp. 2773-2784
    • Yu, N.1    Li, X.2    Cui, G.3    Hayik, S.A.4    Merz, K.M.5
  • 9
    • 34548243709 scopus 로고    scopus 로고
    • Extending the Power of Quantum Chemistry to Large Systems with the Fragment Molecular Orbital Method
    • Fedorov, D. G.; Kitaura, K. Extending the Power of Quantum Chemistry to Large Systems with the Fragment Molecular Orbital Method J. Phys. Chem. A 2007, 111, 6904-14 10.1021/jp0716740
    • (2007) J. Phys. Chem. A , vol.111 , pp. 6904-6914
    • Fedorov, D.G.1    Kitaura, K.2
  • 10
    • 84929353404 scopus 로고    scopus 로고
    • Energy Decomposition Analysis Approaches and Their Evaluation on Prototypical Protein-Drug Interaction Patterns
    • Phipps, M. J.; Fox, T.; Tautermann, C. S.; Skylaris, C. K. Energy Decomposition Analysis Approaches and Their Evaluation on Prototypical Protein-Drug Interaction Patterns Chem. Soc. Rev. 2015, 44, 3177-211 10.1039/C4CS00375F
    • (2015) Chem. Soc. Rev. , vol.44 , pp. 3177-3211
    • Phipps, M.J.1    Fox, T.2    Tautermann, C.S.3    Skylaris, C.K.4
  • 11
    • 84861168753 scopus 로고    scopus 로고
    • Exploring Chemistry with the Fragment Molecular Orbital Method
    • Fedorov, D. G.; Nagata, T.; Kitaura, K. Exploring Chemistry with the Fragment Molecular Orbital Method Phys. Chem. Chem. Phys. 2012, 14, 7562-77 10.1039/c2cp23784a
    • (2012) Phys. Chem. Chem. Phys. , vol.14 , pp. 7562-7577
    • Fedorov, D.G.1    Nagata, T.2    Kitaura, K.3
  • 12
    • 0000721543 scopus 로고    scopus 로고
    • Fragment Molecular Orbital Method: An Approximate Computational Method for Large Molecules
    • Kitaura, K.; Ikeo, E.; Asada, T.; Nakano, T.; Uebayasi, M. Fragment Molecular Orbital Method: An Approximate Computational Method for Large Molecules Chem. Phys. Lett. 1999, 313, 701-706 10.1016/S0009-2614(99)00874-X
    • (1999) Chem. Phys. Lett. , vol.313 , pp. 701-706
    • Kitaura, K.1    Ikeo, E.2    Asada, T.3    Nakano, T.4    Uebayasi, M.5
  • 13
    • 84962398996 scopus 로고    scopus 로고
    • GAMESS as a Free Quantum-Mechanical Platform for Drug Research
    • Alexeev, Y.; Mazanetz, M. P.; Ichihara, O.; Fedorov, D. G. GAMESS as a Free Quantum-Mechanical Platform for Drug Research Curr. Top. Med. Chem. 2012, 12, 2013-33 10.2174/156802612804910269
    • (2012) Curr. Top. Med. Chem. , vol.12 , pp. 2013-2033
    • Alexeev, Y.1    Mazanetz, M.P.2    Ichihara, O.3    Fedorov, D.G.4
  • 14
    • 33846595219 scopus 로고    scopus 로고
    • Pair Interaction Energy Decomposition Analysis
    • Fedorov, D. G.; Kitaura, K. Pair Interaction Energy Decomposition Analysis J. Comput. Chem. 2007, 28, 222-37 10.1002/jcc.20496
    • (2007) J. Comput. Chem. , vol.28 , pp. 222-237
    • Fedorov, D.G.1    Kitaura, K.2
  • 15
    • 77950813968 scopus 로고    scopus 로고
    • Electrostatic Polarization Makes a Substantial Contribution to the Free Energy of Avidin-Biotin Binding
    • Tong, Y.; Mei, Y.; Li, Y. L.; Ji, C. G.; Zhang, J. Z. Electrostatic Polarization Makes a Substantial Contribution to the Free Energy of Avidin-Biotin Binding J. Am. Chem. Soc. 2010, 132, 5137-42 10.1021/ja909575j
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 5137-5142
    • Tong, Y.1    Mei, Y.2    Li, Y.L.3    Ji, C.G.4    Zhang, J.Z.5
  • 18
    • 84860389789 scopus 로고    scopus 로고
    • Ch/Pi Hydrogen Bonds Play a Role in Ligand Recognition and Equilibrium between Active and Inactive States of the Beta2 Adrenergic Receptor: An Ab Initio Fragment Molecular Orbital (FMO) Study
    • Ozawa, T.; Okazaki, K.; Kitaura, K. Ch/Pi Hydrogen Bonds Play a Role in Ligand Recognition and Equilibrium between Active and Inactive States of the Beta2 Adrenergic Receptor: An Ab Initio Fragment Molecular Orbital (FMO) Study Bioorg. Med. Chem. 2011, 19, 5231-7 10.1016/j.bmc.2011.07.004
    • (2011) Bioorg. Med. Chem. , vol.19 , pp. 5231-5237
    • Ozawa, T.1    Okazaki, K.2    Kitaura, K.3
  • 19
    • 33947583038 scopus 로고    scopus 로고
    • Substituent Effects on Noncovalent Halogen/Π Interactions: Theoretical Study
    • Lu, Y.-X.; Zou, J.-W.; Wang, Y.-H.; Yu, Q.-S. Substituent Effects on Noncovalent Halogen/Π Interactions: Theoretical Study Int. J. Quantum Chem. 2007, 107, 1479-1486 10.1002/qua.21279
    • (2007) Int. J. Quantum Chem. , vol.107 , pp. 1479-1486
    • Lu, Y.-X.1    Zou, J.-W.2    Wang, Y.-H.3    Yu, Q.-S.4
  • 20
  • 21
    • 84880616556 scopus 로고    scopus 로고
    • C-H⋯O Non-Classical Hydrogen Bonding in the Stereomechanics of Organic Transformations: Theory and Recognition
    • Johnston, R. C.; Cheong, P. H. C-H⋯O Non-Classical Hydrogen Bonding in the Stereomechanics of Organic Transformations: Theory and Recognition Org. Biomol. Chem. 2013, 11, 5057-64 10.1039/c3ob40828k
    • (2013) Org. Biomol. Chem. , vol.11 , pp. 5057-5064
    • Johnston, R.C.1    Cheong, P.H.2
  • 22
    • 84855846761 scopus 로고    scopus 로고
    • Energy Decomposition Analysis in Solution Based on the Fragment Molecular Orbital Method
    • Fedorov, D. G.; Kitaura, K. Energy Decomposition Analysis in Solution Based on the Fragment Molecular Orbital Method J. Phys. Chem. A 2012, 116, 704-19 10.1021/jp209579w
    • (2012) J. Phys. Chem. A , vol.116 , pp. 704-719
    • Fedorov, D.G.1    Kitaura, K.2
  • 24
    • 79751471221 scopus 로고    scopus 로고
    • Prediction of Cyclin-Dependent Kinase 2 Inhibitor Potency Using the Fragment Molecular Orbital Method
    • Mazanetz, M. P.; Ichihara, O.; Law, R. J.; Whittaker, M. Prediction of Cyclin-Dependent Kinase 2 Inhibitor Potency Using the Fragment Molecular Orbital Method J. Cheminf. 2011, 3, 2 10.1186/1758-2946-3-2
    • (2011) J. Cheminf. , vol.3 , pp. 2
    • Mazanetz, M.P.1    Ichihara, O.2    Law, R.J.3    Whittaker, M.4
  • 25
    • 84900816215 scopus 로고    scopus 로고
    • Electron-Correlated Fragment-Molecular-Orbital Calculations for Biomolecular and Nano Systems
    • Tanaka, S.; Mochizuki, Y.; Komeiji, Y.; Okiyama, Y.; Fukuzawa, K. Electron-Correlated Fragment-Molecular-Orbital Calculations for Biomolecular and Nano Systems Phys. Chem. Chem. Phys. 2014, 16, 10310-44 10.1039/c4cp00316k
    • (2014) Phys. Chem. Chem. Phys. , vol.16 , pp. 10310-10344
    • Tanaka, S.1    Mochizuki, Y.2    Komeiji, Y.3    Okiyama, Y.4    Fukuzawa, K.5
  • 26
    • 56349128485 scopus 로고    scopus 로고
    • Ch/Pi Hydrogen Bonds Determine the Selectivity of the Src Homology 2 Domain to Tyrosine Phosphotyrosyl Peptides: An Ab Initio Fragment Molecular Orbital Study
    • Ozawa, T.; Okazaki, K. Ch/Pi Hydrogen Bonds Determine the Selectivity of the Src Homology 2 Domain to Tyrosine Phosphotyrosyl Peptides: An Ab Initio Fragment Molecular Orbital Study J. Comput. Chem. 2008, 29, 2656-66 10.1002/jcc.20998
    • (2008) J. Comput. Chem. , vol.29 , pp. 2656-2666
    • Ozawa, T.1    Okazaki, K.2
  • 27
    • 84905169014 scopus 로고    scopus 로고
    • Interaction Energy Analysis on Specific Binding of Influenza Virus Hemagglutinin to Avian and Human Sialosaccharide Receptors: Importance of Mutation-Induced Structural Change
    • Anzaki, S.; Watanabe, C.; Fukuzawa, K.; Mochizuki, Y.; Tanaka, S. Interaction Energy Analysis on Specific Binding of Influenza Virus Hemagglutinin to Avian and Human Sialosaccharide Receptors: Importance of Mutation-Induced Structural Change J. Mol. Graphics Modell. 2014, 53, 48-58 10.1016/j.jmgm.2014.07.004
    • (2014) J. Mol. Graphics Modell. , vol.53 , pp. 48-58
    • Anzaki, S.1    Watanabe, C.2    Fukuzawa, K.3    Mochizuki, Y.4    Tanaka, S.5
  • 28
    • 80054930148 scopus 로고    scopus 로고
    • Correlation Analyses on Binding Affinity of Sialic Acid Analogues and Anti-Influenza Drugs with Human Neuraminidase Using Ab Initio Mo Calculations on Their Complex Structures - Lere-Qsar Analysis (Iv)
    • Hitaoka, S.; Matoba, H.; Harada, M.; Yoshida, T.; Tsuji, D.; Hirokawa, T.; Itoh, K.; Chuman, H. Correlation Analyses on Binding Affinity of Sialic Acid Analogues and Anti-Influenza Drugs with Human Neuraminidase Using Ab Initio Mo Calculations on Their Complex Structures - Lere-Qsar Analysis (Iv) J. Chem. Inf. Model. 2011, 51, 2706-16 10.1021/ci2002395
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 2706-2716
    • Hitaoka, S.1    Matoba, H.2    Harada, M.3    Yoshida, T.4    Tsuji, D.5    Hirokawa, T.6    Itoh, K.7    Chuman, H.8
  • 29
    • 28044438176 scopus 로고    scopus 로고
    • Ab Initio Fragment Molecular Orbital (FMO) Method Applied to Analysis of the Ligand-Protein Interaction in a Pheromone-Binding Protein
    • Nemoto, T.; Fedorov, D. G.; Uebayasi, M.; Kanazawa, K.; Kitaura, K.; Komeiji, Y. Ab Initio Fragment Molecular Orbital (FMO) Method Applied to Analysis of the Ligand-Protein Interaction in a Pheromone-Binding Protein Comput. Biol. Chem. 2005, 29, 434-9 10.1016/j.compbiolchem.2005.09.005
    • (2005) Comput. Biol. Chem. , vol.29 , pp. 434-439
    • Nemoto, T.1    Fedorov, D.G.2    Uebayasi, M.3    Kanazawa, K.4    Kitaura, K.5    Komeiji, Y.6
  • 31
    • 84891751622 scopus 로고    scopus 로고
    • The Druggable Genome: Evaluation of Drug Targets in Clinical Trials Suggests Major Shifts in Molecular Class and Indication
    • Rask-Andersen, M.; Masuram, S.; Schioth, H. B. The Druggable Genome: Evaluation of Drug Targets in Clinical Trials Suggests Major Shifts in Molecular Class and Indication Annu. Rev. Pharmacol. Toxicol. 2014, 54, 9-26 10.1146/annurev-pharmtox-011613-135943
    • (2014) Annu. Rev. Pharmacol. Toxicol. , vol.54 , pp. 9-26
    • Rask-Andersen, M.1    Masuram, S.2    Schioth, H.B.3
  • 32
    • 0037082324 scopus 로고    scopus 로고
    • Target Validation of G-Protein Coupled Receptors
    • Wise, A.; Gearing, K.; Rees, S. Target Validation of G-Protein Coupled Receptors Drug Discovery Today 2002, 7, 235-46 10.1016/S1359-6446(01)02131-6
    • (2002) Drug Discovery Today , vol.7 , pp. 235-246
    • Wise, A.1    Gearing, K.2    Rees, S.3
  • 34
    • 84939156572 scopus 로고    scopus 로고
    • Thematic Minireview Series: New Directions in G Protein-Coupled Receptor Pharmacology
    • Dohlman, H. G. Thematic Minireview Series: New Directions in G Protein-Coupled Receptor Pharmacology J. Biol. Chem. 2015, 290, 19469-70 10.1074/jbc.R115.675728
    • (2015) J. Biol. Chem. , vol.290 , pp. 19469-19470
    • Dohlman, H.G.1
  • 36
    • 84930868579 scopus 로고    scopus 로고
    • GPCR Crystal Structures: Medicinal Chemistry in the Pocket
    • Shonberg, J.; Kling, R. C.; Gmeiner, P.; Lober, S. GPCR Crystal Structures: Medicinal Chemistry in the Pocket Bioorg. Med. Chem. 2014, 23, 3880-906 10.1016/j.bmc.2014.12.034
    • (2014) Bioorg. Med. Chem. , vol.23 , pp. 3880-3906
    • Shonberg, J.1    Kling, R.C.2    Gmeiner, P.3    Lober, S.4
  • 38
    • 84899714976 scopus 로고    scopus 로고
    • The 2.1 a Resolution Structure of Cyanopindolol-Bound Beta1-Adrenoceptor Identifies an Intramembrane Na+ Ion That Stabilises the Ligand-Free Receptor
    • Miller-Gallacher, J. L.; Nehme, R.; Warne, T.; Edwards, P. C.; Schertler, G. F.; Leslie, A. G.; Tate, C. G. The 2.1 a Resolution Structure of Cyanopindolol-Bound Beta1-Adrenoceptor Identifies an Intramembrane Na+ Ion That Stabilises the Ligand-Free Receptor PLoS One 2014, 9, e92727 10.1371/journal.pone.0092727
    • (2014) PLoS One , vol.9
    • Miller-Gallacher, J.L.1    Nehme, R.2    Warne, T.3    Edwards, P.C.4    Schertler, G.F.5    Leslie, A.G.6    Tate, C.G.7
  • 46
    • 84925506175 scopus 로고    scopus 로고
    • Crystal Structure of the Human OX2 Orexin Receptor Bound to the Insomnia Drug Suvorexant
    • Yin, J.; Mobarec, J. C.; Kolb, P.; Rosenbaum, D. M. Crystal Structure of the Human OX2 Orexin Receptor Bound to the Insomnia Drug Suvorexant Nature 2015, 519, 247-50 10.1038/nature14035
    • (2015) Nature , vol.519 , pp. 247-250
    • Yin, J.1    Mobarec, J.C.2    Kolb, P.3    Rosenbaum, D.M.4
  • 54
    • 77957055780 scopus 로고
    • Integrated Methods for the Construction of Three-Dimensional Models and Computational Probing of Structure-Function Relations in G Protein-Coupled Receptors
    • Ballesteros, J. A.; Weinstein, H. Integrated Methods for the Construction of Three-Dimensional Models and Computational Probing of Structure-Function Relations in G Protein-Coupled Receptors Methods Neurosci. 1995, 25, 366-428 10.1016/S1043-9471(05)80049-7
    • (1995) Methods Neurosci. , vol.25 , pp. 366-428
    • Ballesteros, J.A.1    Weinstein, H.2
  • 55
    • 0037184031 scopus 로고    scopus 로고
    • Conserved Helix 7 Tyrosine Acts as a Multistate Conformational Switch in the 5ht2c Receptor. Identification of a Novel "locked-on" Phenotype and Double Revertant Mutations
    • Prioleau, C.; Visiers, I.; Ebersole, B. J.; Weinstein, H.; Sealfon, S. C. Conserved Helix 7 Tyrosine Acts as a Multistate Conformational Switch in the 5ht2c Receptor. Identification of a Novel "Locked-on" Phenotype and Double Revertant Mutations J. Biol. Chem. 2002, 277, 36577-36584 10.1074/jbc.M206223200
    • (2002) J. Biol. Chem. , vol.277 , pp. 36577-36584
    • Prioleau, C.1    Visiers, I.2    Ebersole, B.J.3    Weinstein, H.4    Sealfon, S.C.5
  • 56
    • 0034923094 scopus 로고    scopus 로고
    • The Role and Regulation of Adenosine in the Central Nervous System
    • Dunwiddie, T. V.; Masino, S. A. The Role and Regulation of Adenosine in the Central Nervous System Annu. Rev. Neurosci. 2001, 24, 31-55 10.1146/annurev.neuro.24.1.31
    • (2001) Annu. Rev. Neurosci. , vol.24 , pp. 31-55
    • Dunwiddie, T.V.1    Masino, S.A.2
  • 58
    • 77951244300 scopus 로고    scopus 로고
    • Ligand Binding and Subtype Selectivity of the Human a(2a) Adenosine Receptor: Identification and Characterization of Essential Amino Acid Residues
    • Jaakola, V. P.; Lane, J. R.; Lin, J. Y.; Katritch, V.; Ijzerman, A. P.; Stevens, R. C. Ligand Binding and Subtype Selectivity of the Human a(2a) Adenosine Receptor: Identification and Characterization of Essential Amino Acid Residues J. Biol. Chem. 2010, 285, 13032-44 10.1074/jbc.M109.096974
    • (2010) J. Biol. Chem. , vol.285 , pp. 13032-13044
    • Jaakola, V.P.1    Lane, J.R.2    Lin, J.Y.3    Katritch, V.4    Ijzerman, A.P.5    Stevens, R.C.6
  • 59
    • 77953761665 scopus 로고    scopus 로고
    • Mapping the Binding Pocket of Dual Antagonist Almorexant to Human Orexin 1 and Orexin 2 Receptors: Comparison with the Selective Ox1 Antagonist Sb-674042 and the Selective Ox2 Antagonist N-Ethyl-2-[(6-Methoxy-Pyridin-3-Yl)-(Toluene-2-Sulfonyl)-Amino]-N-Pyridin-3-Ylmet Hyl-Acetamide (Empa)
    • Malherbe, P.; Roche, O.; Marcuz, A.; Kratzeisen, C.; Wettstein, J. G.; Bissantz, C. Mapping the Binding Pocket of Dual Antagonist Almorexant to Human Orexin 1 and Orexin 2 Receptors: Comparison with the Selective Ox1 Antagonist Sb-674042 and the Selective Ox2 Antagonist N-Ethyl-2-[(6-Methoxy-Pyridin-3-Yl)-(Toluene-2-Sulfonyl)-Amino]-N-Pyridin-3-Ylmet Hyl-Acetamide (Empa) Mol. Pharmacol. 2010, 78, 81-93 10.1124/mol.110.064584
    • (2010) Mol. Pharmacol. , vol.78 , pp. 81-93
    • Malherbe, P.1    Roche, O.2    Marcuz, A.3    Kratzeisen, C.4    Wettstein, J.G.5    Bissantz, C.6
  • 60
    • 80055007016 scopus 로고    scopus 로고
    • Dissecting the Functions of Conserved Prolines within Transmembrane Helices of the D2 Dopamine Receptor
    • Van Arnam, E. B.; Lester, H. A.; Dougherty, D. A. Dissecting the Functions of Conserved Prolines within Transmembrane Helices of the D2 Dopamine Receptor ACS Chem. Biol. 2011, 6, 1063-8 10.1021/cb200153g
    • (2011) ACS Chem. Biol. , vol.6 , pp. 1063-1068
    • Van Arnam, E.B.1    Lester, H.A.2    Dougherty, D.A.3
  • 62
    • 84899914806 scopus 로고    scopus 로고
    • Alpha-Bulges in G Protein-Coupled Receptors
    • van der Kant, R.; Vriend, G. Alpha-Bulges in G Protein-Coupled Receptors Int. J. Mol. Sci. 2014, 15, 7841-64 10.3390/ijms15057841
    • (2014) Int. J. Mol. Sci. , vol.15 , pp. 7841-7864
    • Van Der Kant, R.1    Vriend, G.2
  • 63
    • 78650508749 scopus 로고    scopus 로고
    • Using Electrophysiology and in Silico Three-Dimensional Modeling to Reduce Human Ether-a-Go-Go Related Gene K(+) Channel Inhibition in a Histamine H3 Receptor Antagonist Program
    • Davenport, A. J.; Möller, C.; Heifetz, A.; Mazanetz, M. P.; Law, R. J.; Ebneth, A.; Gemkow, M. J. Using Electrophysiology and in Silico Three-Dimensional Modeling to Reduce Human Ether-a-Go-Go Related Gene K(+) Channel Inhibition in a Histamine H3 Receptor Antagonist Program Assay Drug Dev. Technol. 2010, 8, 781-9 10.1089/adt.2010.0322
    • (2010) Assay Drug Dev. Technol. , vol.8 , pp. 781-789
    • Davenport, A.J.1    Möller, C.2    Heifetz, A.3    Mazanetz, M.P.4    Law, R.J.5    Ebneth, A.6    Gemkow, M.J.7
  • 64
    • 84884224776 scopus 로고    scopus 로고
    • Lead Optimization of Ethyl 6-Aminonicotinate Acyl Sulfonamides as Antagonists of the P2y12 Receptor. Separation of the Antithrombotic Effect and Bleeding for Candidate Drug Azd1283
    • Bach, P.; Antonsson, T.; Bylund, R.; Bjorkman, J. A.; Osterlund, K.; Giordanetto, F.; van Giezen, J. J.; Andersen, S. M.; Zachrisson, H.; Zetterberg, F. Lead Optimization of Ethyl 6-Aminonicotinate Acyl Sulfonamides as Antagonists of the P2y12 Receptor. Separation of the Antithrombotic Effect and Bleeding for Candidate Drug Azd1283 J. Med. Chem. 2013, 56, 7015-24 10.1021/jm400820m
    • (2013) J. Med. Chem. , vol.56 , pp. 7015-7024
    • Bach, P.1    Antonsson, T.2    Bylund, R.3    Bjorkman, J.A.4    Osterlund, K.5    Giordanetto, F.6    Van Giezen, J.J.7    Andersen, S.M.8    Zachrisson, H.9    Zetterberg, F.10
  • 69
    • 84907225172 scopus 로고    scopus 로고
    • Design, Synthesis, and Biological Evaluation of (3r)-1,2,3,4-Tetrahydro-7-Hydroxy-N-[(1s)-1-[[(3r,4r)-4-(3-Hydroxyphenyl)-3,4-Dim Ethyl-1-Piperidinyl]Methyl]-2-Methylpropyl]-3-Isoquinolinecarboxamide (Jdtic) Analogues: in Vitro Pharmacology and Adme Profile
    • Kormos, C. M.; Gichinga, M. G.; Maitra, R.; Runyon, S. P.; Thomas, J. B.; Brieaddy, L. E.; Mascarella, S. W.; Navarro, H. A.; Carroll, F. I. Design, Synthesis, and Biological Evaluation of (3r)-1,2,3,4-Tetrahydro-7-Hydroxy-N-[(1s)-1-[[(3r,4r)-4-(3-Hydroxyphenyl)-3,4-Dim Ethyl-1-Piperidinyl]Methyl]-2-Methylpropyl]-3-Isoquinolinecarboxamide (Jdtic) Analogues: In Vitro Pharmacology and Adme Profile J. Med. Chem. 2014, 57, 7367-81 10.1021/jm5008177
    • (2014) J. Med. Chem. , vol.57 , pp. 7367-7381
    • Kormos, C.M.1    Gichinga, M.G.2    Maitra, R.3    Runyon, S.P.4    Thomas, J.B.5    Brieaddy, L.E.6    Mascarella, S.W.7    Navarro, H.A.8    Carroll, F.I.9
  • 71
    • 65549153262 scopus 로고    scopus 로고
    • Conformational Analysis of N,N-Disubstituted-1,4-Diazepane Orexin Receptor Antagonists and Implications for Receptor Binding
    • Cox, C. D.; McGaughey, G. B.; Bogusky, M. J.; Whitman, D. B.; Ball, R. G.; Winrow, C. J.; Renger, J. J.; Coleman, P. J. Conformational Analysis of N,N-Disubstituted-1,4-Diazepane Orexin Receptor Antagonists and Implications for Receptor Binding Bioorg. Med. Chem. Lett. 2009, 19, 2997-3001 10.1016/j.bmcl.2009.04.026
    • (2009) Bioorg. Med. Chem. Lett. , vol.19 , pp. 2997-3001
    • Cox, C.D.1    McGaughey, G.B.2    Bogusky, M.J.3    Whitman, D.B.4    Ball, R.G.5    Winrow, C.J.6    Renger, J.J.7    Coleman, P.J.8
  • 72
    • 78649521266 scopus 로고    scopus 로고
    • Binding of Influenza a Virus Hemagglutinin to the Sialoside Receptor Is Not Controlled by the Homotropic Allosteric Effect
    • Sawada, T.; Fedorov, D. G.; Kitaura, K. Binding of Influenza a Virus Hemagglutinin to the Sialoside Receptor Is Not Controlled by the Homotropic Allosteric Effect J. Phys. Chem. B 2010, 114, 15700-5 10.1021/jp1068895
    • (2010) J. Phys. Chem. B , vol.114 , pp. 15700-15705
    • Sawada, T.1    Fedorov, D.G.2    Kitaura, K.3
  • 75
    • 84860505658 scopus 로고    scopus 로고
    • New Insights from Structural Biology into the Druggability of G Protein-Coupled Receptors
    • Mason, J. S.; Bortolato, A.; Congreve, M.; Marshall, F. H. New Insights from Structural Biology into the Druggability of G Protein-Coupled Receptors Trends Pharmacol. Sci. 2012, 33, 249-260 10.1016/j.tips.2012.02.005
    • (2012) Trends Pharmacol. Sci. , vol.33 , pp. 249-260
    • Mason, J.S.1    Bortolato, A.2    Congreve, M.3    Marshall, F.H.4
  • 76
    • 84921026921 scopus 로고    scopus 로고
    • Activation of G-Protein-Coupled Receptors Correlates with the Formation of a Continuous Internal Water Pathway
    • Yuan, S.; Filipek, S.; Palczewski, K.; Vogel, H. Activation of G-Protein-Coupled Receptors Correlates with the Formation of a Continuous Internal Water Pathway Nat. Commun. 2014, 5, 4733 10.1038/ncomms5733
    • (2014) Nat. Commun. , vol.5 , pp. 4733
    • Yuan, S.1    Filipek, S.2    Palczewski, K.3    Vogel, H.4
  • 78
    • 84857748866 scopus 로고    scopus 로고
    • Rapid and Accurate Prediction and Scoring of Water Molecules in Protein Binding Sites
    • Ross, G. A.; Morris, G. M.; Biggin, P. C. Rapid and Accurate Prediction and Scoring of Water Molecules in Protein Binding Sites PLoS One 2012, 7, e32036 10.1371/journal.pone.0032036
    • (2012) PLoS One , vol.7
    • Ross, G.A.1    Morris, G.M.2    Biggin, P.C.3
  • 79
    • 84896258501 scopus 로고    scopus 로고
    • A Cavity Corrected 3d-Rism Functional for Accurate Solvation Free Energies
    • Truchon, J. F.; Pettitt, B. M.; Labute, P. A Cavity Corrected 3d-Rism Functional for Accurate Solvation Free Energies J. Chem. Theory Comput. 2014, 10, 934-941 10.1021/ct4009359
    • (2014) J. Chem. Theory Comput. , vol.10 , pp. 934-941
    • Truchon, J.F.1    Pettitt, B.M.2    Labute, P.3
  • 83
    • 40949163431 scopus 로고    scopus 로고
    • Role of the Active-Site Solvent in the Thermodynamics of Factor Xa Ligand Binding
    • Abel, R.; Young, T.; Farid, R.; Berne, B. J.; Friesner, R. A. Role of the Active-Site Solvent in the Thermodynamics of Factor Xa Ligand Binding J. Am. Chem. Soc. 2008, 130, 2817-31 10.1021/ja0771033
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 2817-2831
    • Abel, R.1    Young, T.2    Farid, R.3    Berne, B.J.4    Friesner, R.A.5
  • 84
    • 65249157397 scopus 로고    scopus 로고
    • Protonate3d: Assignment of Ionization States and Hydrogen Coordinates to Macromolecular Structures
    • Labute, P. Protonate3d: Assignment of Ionization States and Hydrogen Coordinates to Macromolecular Structures Proteins: Struct., Funct., Genet. 2009, 75, 187-205 10.1002/prot.22234
    • (2009) Proteins: Struct., Funct., Genet. , vol.75 , pp. 187-205
    • Labute, P.1
  • 85
    • 0029315603 scopus 로고
    • Mab, a Generally Applicable Molecular Force Field for Structure Modelling in Medicinal Chemistry
    • Gerber, P. R.; Muller, K. Mab, a Generally Applicable Molecular Force Field for Structure Modelling in Medicinal Chemistry J. Comput.-Aided Mol. Des. 1995, 9, 251-68 10.1007/BF00124456
    • (1995) J. Comput.-Aided Mol. Des. , vol.9 , pp. 251-268
    • Gerber, P.R.1    Muller, K.2
  • 86
    • 84907992125 scopus 로고    scopus 로고
    • F14ipq: A Self-Consistent Force Field for Condensed-Phase Simulations of Proteins
    • Cerutti, D. S.; Swope, W. C.; Rice, J. E.; Case, D. A. f14ipq: A Self-Consistent Force Field for Condensed-Phase Simulations of Proteins J. Chem. Theory Comput. 2014, 10, 4515-4534 10.1021/ct500643c
    • (2014) J. Chem. Theory Comput. , vol.10 , pp. 4515-4534
    • Cerutti, D.S.1    Swope, W.C.2    Rice, J.E.3    Case, D.A.4
  • 89
    • 84920100728 scopus 로고    scopus 로고
    • A QSAR Study on the Inhibition Mechanism of Matrix Metalloproteinase-12 by Arylsulfone Analogs Based on Molecular Orbital Calculations
    • Hitaoka, S.; Chuman, H.; Yoshizawa, K. A QSAR Study on the Inhibition Mechanism of Matrix Metalloproteinase-12 by Arylsulfone Analogs Based on Molecular Orbital Calculations Org. Biomol. Chem. 2015, 13, 793-806 10.1039/C4OB01843E
    • (2015) Org. Biomol. Chem. , vol.13 , pp. 793-806
    • Hitaoka, S.1    Chuman, H.2    Yoshizawa, K.3
  • 90
    • 4344708244 scopus 로고    scopus 로고
    • Second Order Møller-Plesset Perturbation Theory Based Upon the Fragment Molecular Orbital Method
    • Fedorov, D. G.; Kitaura, K. Second Order Møller-Plesset Perturbation Theory Based Upon the Fragment Molecular Orbital Method J. Chem. Phys. 2004, 121, 2483-90 10.1063/1.1769362
    • (2004) J. Chem. Phys. , vol.121 , pp. 2483-2490
    • Fedorov, D.G.1    Kitaura, K.2
  • 91
    • 61949343293 scopus 로고    scopus 로고
    • Cluster Hydration Model for Binding Energy Calculations of Protein-Ligand Complexes
    • Murata, K.; Fedorov, D. G.; Nakanishi, I.; Kitaura, K. Cluster Hydration Model for Binding Energy Calculations of Protein-Ligand Complexes J. Phys. Chem. B 2009, 113, 809-17 10.1021/jp805007f
    • (2009) J. Phys. Chem. B , vol.113 , pp. 809-817
    • Murata, K.1    Fedorov, D.G.2    Nakanishi, I.3    Kitaura, K.4


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