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Volumn 16, Issue 10, 2015, Pages 567-582

Elucidating the molecular architecture of adaptation via evolve and resequence experiments

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RNA;

EID: 84941934046     PISSN: 14710056     EISSN: 14710064     Source Type: Journal    
DOI: 10.1038/nrg3937     Document Type: Review
Times cited : (176)

References (148)
  • 1
    • 59449107920 scopus 로고    scopus 로고
    • Selective sweep at a quantitative trait locus in the presence of background genetic variation
    • Chevin, L. M. & Hospital, F. Selective sweep at a quantitative trait locus in the presence of background genetic variation. Genetics 180, 1645-1660 (2008
    • (2008) Genetics , vol.180 , pp. 1645-1660
    • Chevin, L.M.1    Hospital, F.2
  • 2
    • 18844439645 scopus 로고    scopus 로고
    • Soft sweeps: Molecular population genetics of adaptation from standing genetic variation
    • Hermisson, J. & Pennings, P. S. Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics 169, 2335-2352 (2005
    • (2005) Genetics , vol.169 , pp. 2335-2352
    • Hermisson, J.1    Pennings, P.S.2
  • 3
    • 0024372736 scopus 로고
    • The 'hitchhiking effect' revisited
    • Kaplan, N. L., Hudson, R. R. & Langley, C. H. The 'hitchhiking effect' revisited. Genetics 123, 887-899 (1989
    • (1989) Genetics , vol.123 , pp. 887-899
    • Kaplan, N.L.1    Hudson, R.R.2    Langley, C.H.3
  • 4
    • 84855505144 scopus 로고    scopus 로고
    • Heterozygote advantage as a natural consequence of adaptation in diploids
    • Sellis, D., Callahan, B. J., Petrov, D. A. & Messer, P. W. Heterozygote advantage as a natural consequence of adaptation in diploids. Proc. Natl Acad. Sci. USA 108, 20666-20671 (2011
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 20666-20671
    • Sellis, D.1    Callahan, B.J.2    Petrov, D.A.3    Messer, P.W.4
  • 5
    • 84957429296 scopus 로고    scopus 로고
    • Experimental microbial evolution: History and conceptual underpinnings
    • Adams, J. & Rosenzweig, F. Experimental microbial evolution: history and conceptual underpinnings. Genomics 104, 393-398 (2014
    • (2014) Genomics , vol.104 , pp. 393-398
    • Adams, J.1    Rosenzweig, F.2
  • 6
    • 0038441327 scopus 로고    scopus 로고
    • Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation
    • Elena, S. F. & Lenski, R. E. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4, 457-469 (2003
    • (2003) Nat. Rev. Genet , vol.4 , pp. 457-469
    • Elena, S.F.1    Lenski, R.E.2
  • 7
    • 79952291784 scopus 로고    scopus 로고
    • Experimental selection of hypoxia-tolerant Drosophila melanogaster
    • Zhou, D. et al. Experimental selection of hypoxia-tolerant Drosophila melanogaster. Proc. Natl Acad. Sci. USA 108, 2349-2354 (2011
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 2349-2354
    • Zhou, D.1
  • 8
    • 84894515914 scopus 로고    scopus 로고
    • MiR 9a minimizes the phenotypic impact of genomic diversity by buffering a transcription factor
    • Cassidy, J. J. et al. miR 9a minimizes the phenotypic impact of genomic diversity by buffering a transcription factor. Cell 155, 1556-1567 (2013
    • (2013) Cell , vol.155 , pp. 1556-1567
    • Cassidy, J.J.1
  • 9
    • 77954743785 scopus 로고    scopus 로고
    • Mutational effects and the evolution of new protein functions
    • Soskine, M. & Tawfik, D. S. Mutational effects and the evolution of new protein functions. Nat. Rev. Genet. 11, 572-582 (2010
    • (2010) Nat. Rev. Genet , vol.11 , pp. 572-582
    • Soskine, M.1    Tawfik, D.S.2
  • 10
    • 0032853242 scopus 로고    scopus 로고
    • In vitro selection of functional nucleic acids
    • Wilson, D. S. & Szostak, J. W. In vitro selection of functional nucleic acids. Annu. Rev. Biochem. 68, 611-647 (1999
    • (1999) Annu. Rev. Biochem , vol.68 , pp. 611-647
    • Wilson, D.S.1    Szostak, J.W.2
  • 11
    • 34548311711 scopus 로고    scopus 로고
    • Forty years of in vitro evolution
    • Joyce, G. F. Forty years of in vitro evolution. Angew. Chem. Int. Ed. Engl. 46, 6420-6436 (2007
    • (2007) Angew. Chem. Int. Ed. Engl , vol.46 , pp. 6420-6436
    • Joyce, G.F.1
  • 13
    • 84865866440 scopus 로고    scopus 로고
    • Experimental evolution
    • Kawecki, T. J. et al. Experimental evolution. Trends Ecol. Evol. 27, 547-560 (2012
    • (2012) Trends Ecol. Evol , vol.27 , pp. 547-560
    • Kawecki, T.J.1
  • 14
    • 79953735688 scopus 로고    scopus 로고
    • Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster
    • Turner, T. L., Stewart, A. D., Fields, A. T., Rice, W. R. & Tarone, A. M. Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster. PLoS Genet. 7, e1001336 (2011
    • (2011) PLoS Genet , vol.7 , pp. e1001336
    • Turner, T.L.1    Stewart, A.D.2    Fields, A.T.3    Rice, W.R.4    Tarone, A.M.5
  • 15
    • 77957963240 scopus 로고    scopus 로고
    • Rapid construction of empirical RNA fitness landscapes
    • Pitt, J. N. & Ferré-D'Amaré, A. R. Rapid construction of empirical RNA fitness landscapes. Science 330, 376-379 (2010)
    • (2010) Science , vol.330 , pp. 376-379
    • Pitt, J.N.1    Ferré-D'Amaré, A.R.2
  • 16
    • 0033575348 scopus 로고    scopus 로고
    • Different trajectories of parallel evolution during viral adaptation
    • Wichman, H. A., Badgett, M. R., Scott, L. A., Boulianne, C. M. & Bull, J. J. Different trajectories of parallel evolution during viral adaptation. Science 285, 422-424 (1999
    • (1999) Science , vol.285 , pp. 422-424
    • Wichman, H.A.1    Badgett, M.R.2    Scott, L.A.3    Boulianne, C.M.4    Bull, J.J.5
  • 17
    • 24644462173 scopus 로고    scopus 로고
    • Accurate multiplex polony sequencing of an evolved bacterial genome
    • Shendure, J. et al. Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309, 1728-1732 (2005
    • (2005) Science , vol.309 , pp. 1728-1732
    • Shendure, J.1
  • 18
    • 33751544539 scopus 로고    scopus 로고
    • Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale
    • Herring, C. D. et al. Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. Nat. Genet. 38, 1406-1412 (2006
    • (2006) Nat. Genet , vol.38 , pp. 1406-1412
    • Herring, C.D.1
  • 19
    • 33744482546 scopus 로고    scopus 로고
    • Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor
    • Velicer, G. J. et al. Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor. Proc. Natl Acad. Sci. USA 103, 8107-8112 (2006
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 8107-8112
    • Velicer, G.J.1
  • 20
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with Escherichia coli
    • Barrick, J. E. et al. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461, 1243-1247 (2009)
    • (2009) Nature , vol.461 , pp. 1243-1247
    • Barrick, J.E.1
  • 21
    • 77949551578 scopus 로고    scopus 로고
    • Whole-genome sequencing of a laboratory-evolved yeast strain
    • Araya, C. L., Payen, C., Dunham, M. J. & Fields, S. Whole-genome sequencing of a laboratory-evolved yeast strain. BMC Genomics 11, 88 (2010
    • (2010) BMC Genomics , vol.11 , Issue.88
    • Araya, C.L.1    Payen, C.2    Dunham, M.J.3    Fields, S.4
  • 22
    • 77957346489 scopus 로고    scopus 로고
    • Genome-wide analysis of a long-term evolution experiment with Drosophila
    • Burke, M. K. et al. Genome-wide analysis of a long-term evolution experiment with Drosophila. Nature 467, 587-590 (2010)
    • (2010) Nature , vol.467 , pp. 587-590
    • Burke, M.K.1
  • 23
    • 84858419168 scopus 로고    scopus 로고
    • Quantifying selection acting on a complex trait using allele frequency time series data
    • Illingworth, C. J. R., Parts, L., Schiffels, S., Liti, G. & Mustonen, V. Quantifying selection acting on a complex trait using allele frequency time series data. Mol. Biol. Evol. 29, 1187-1197 (2012
    • (2012) Mol. Biol. Evol , vol.29 , pp. 1187-1197
    • Illingworth, C.J.R.1    Parts, L.2    Schiffels, S.3    Liti, G.4    Mustonen, V.5
  • 24
    • 84920877236 scopus 로고    scopus 로고
    • The impact of macroscopic epistasis on long-term evolutionary dynamics
    • Good, B. H. & Desai, M. M. The impact of macroscopic epistasis on long-term evolutionary dynamics. Genetics 199, 177-190 (2015
    • (2015) Genetics , vol.199 , pp. 177-190
    • Good, B.H.1    Desai, M.M.2
  • 25
    • 84876818452 scopus 로고    scopus 로고
    • The loci of repeated evolution: A catalog of genetic hotspots of phenotypic variation
    • Martin, A. & Orgogozo, V. The loci of repeated evolution: a catalog of genetic hotspots of phenotypic variation. Evolution 67, 1235-1250 (2013
    • (2013) Evolution , vol.67 , pp. 1235-1250
    • Martin, A.1    Orgogozo, V.2
  • 26
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: Evo devo and the genetics of adaptation
    • Hoekstra, H. E. & Coyne, J. A. The locus of evolution: evo devo and the genetics of adaptation. Evolution 61, 995-1016 (2007
    • (2007) Evolution , vol.61 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, J.A.2
  • 28
    • 84871288267 scopus 로고    scopus 로고
    • Efficient, expansive, user-defined mutagenesis
    • Firnberg, E. & Ostermeier, M. PFunkel: efficient, expansive, user-defined mutagenesis. PLoS ONE 7, e52031 (2012
    • (2012) PLoS ONE , vol.7 , pp. e52031
    • Firnberg, E.1    PFunkel, O.M.2
  • 31
    • 84885402361 scopus 로고    scopus 로고
    • An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF ?B as an example
    • Gu, G., Wang, T., Yang, Y., Xu, X. & Wang, J. An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF ?B as an example. PLoS ONE 8, e76109 (2013
    • (2013) PLoS ONE , vol.8 , pp. e76109
    • Gu, G.1    Wang, T.2    Yang, Y.3    Xu, X.4    Wang, J.5
  • 32
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington, A. D. & Szostak, J. W. In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818-822 (1990
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 33
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk, C. & Gold, L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249, 505-510 (1990
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 34
    • 0025332385 scopus 로고
    • Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA
    • Robertson, D. L. & Joyce, G. F. Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA. Nature 344, 467-468 (1990
    • (1990) Nature , vol.344 , pp. 467-468
    • Robertson, D.L.1    Joyce, G.F.2
  • 35
    • 0037015034 scopus 로고    scopus 로고
    • Isolation of high-Affinity GTP aptamers from partially structured RNA libraries
    • Davis, J. H. & Szostak, J. W. Isolation of high-Affinity GTP aptamers from partially structured RNA libraries. Proc. Natl Acad. Sci. USA 99, 11616-11621 (2002
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 11616-11621
    • Davis, J.H.1    Szostak, J.W.2
  • 36
    • 0026599465 scopus 로고
    • Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures
    • Ellington, A. D. & Szostak, J. W. Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures. Nature 355, 850-852 (1992
    • (1992) Nature , vol.355 , pp. 850-852
    • Ellington, A.D.1    Szostak, J.W.2
  • 37
    • 0028675028 scopus 로고
    • DNA enzyme that cleaves RNA
    • Breaker, R. R. & Joyce, G. F. A. DNA enzyme that cleaves RNA. Chem. Biol. 1, 223-229 (1994
    • (1994) Chem. Biol , vol.1 , pp. 223-229
    • Breaker, R.R.1    Joyce, G.F.A.2
  • 38
    • 80051958795 scopus 로고    scopus 로고
    • Evolution of functional nucleic acids in the presence of nonheritable backbone heterogeneity
    • Trevino, S. G., Zhang, N., Elenko, M. P., Lupták, A. & Szostak, J. W. Evolution of functional nucleic acids in the presence of nonheritable backbone heterogeneity. Proc. Natl Acad. Sci. USA 108, 13492-13497 (2011
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 13492-13497
    • Trevino, S.G.1    Zhang, N.2    Elenko, M.P.3    Lupták, A.4    Szostak, J.W.5
  • 39
    • 84863116739 scopus 로고    scopus 로고
    • Darwinian evolution of an alternative genetic system provides support for TNA as an RNA progenitor
    • Yu, H., Zhang, S. & Chaput, J. C. Darwinian evolution of an alternative genetic system provides support for TNA as an RNA progenitor. Nat. Chem. 4, 183-187 (2012
    • (2012) Nat. Chem , vol.4 , pp. 183-187
    • Yu, H.1    Zhang, S.2    Chaput, J.C.3
  • 40
    • 84925481613 scopus 로고    scopus 로고
    • Catalysts from synthetic genetic polymers
    • Taylor, A. I. et al. Catalysts from synthetic genetic polymers. Nature 518, 427-430 (2015
    • (2015) Nature , vol.518 , pp. 427-430
    • Taylor, A.I.1
  • 41
    • 0030817279 scopus 로고    scopus 로고
    • RNA-peptide fusions for the in vitro selection of peptides and proteins
    • Roberts, R. W. & Szostak, J. W. RNA-peptide fusions for the in vitro selection of peptides and proteins. Proc. Natl Acad. Sci. USA 94, 12297-12302 (1997
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 12297-12302
    • Roberts, R.W.1    Szostak, J.W.2
  • 42
    • 34547958191 scopus 로고    scopus 로고
    • Selection and evolution of enzymes from a partially randomized non-catalytic scaffold
    • Seelig, B. & Szostak, J. W. Selection and evolution of enzymes from a partially randomized non-catalytic scaffold. Nature 448, 828-831 (2007
    • (2007) Nature , vol.448 , pp. 828-831
    • Seelig, B.1    Szostak, J.W.2
  • 43
    • 0027488624 scopus 로고
    • Isolation of new ribozymes from a large pool of random sequences
    • Bartel, D. P. & Szostak, J. W. Isolation of new ribozymes from a large pool of random sequences. Science 261, 1411-1418 (1993
    • (1993) Science , vol.261 , pp. 1411-1418
    • Bartel, D.P.1    Szostak, J.W.2
  • 44
    • 84939618118 scopus 로고    scopus 로고
    • High-throughput assay and engineering of self-cleaving ribozymes by sequencing
    • Kobori, S., Nomura, Y., Miu, A. & Yokobayashi, Y. High-throughput assay and engineering of self-cleaving ribozymes by sequencing. Nucleic Acids Res. 43, e85 (2015
    • (2015) Nucleic Acids Res , vol.43 , pp. e85
    • Kobori, S.1    Nomura, Y.2    Miu, A.3    Yokobayashi, Y.4
  • 45
    • 84880673487 scopus 로고    scopus 로고
    • Synthetic shuffling and in vitro selection reveal the rugged adaptive fitness landscape of a kinase ribozyme
    • Curtis, E. A. & Bartel, D. P. Synthetic shuffling and in vitro selection reveal the rugged adaptive fitness landscape of a kinase ribozyme. RNA 19, 1116-1128 (2013
    • (2013) RNA , vol.19 , pp. 1116-1128
    • Curtis, E.A.1    Bartel, D.P.2
  • 46
    • 84893211760 scopus 로고    scopus 로고
    • Next-generation sequencing reveals how RNA catalysts evolve from random space
    • Ameta, S., Winz, M. L., Previti, C. & Jäschke, A. Next-generation sequencing reveals how RNA catalysts evolve from random space. Nucleic Acids Res. 42, 1303-1310 (2014
    • (2014) Nucleic Acids Res , vol.42 , pp. 1303-1310
    • Ameta, S.1    Winz, M.L.2    Previti, C.3    Jäschke, A.4
  • 47
    • 84894354231 scopus 로고    scopus 로고
    • The effects of stabilizing and directional selection on phenotypic and genotypic variation in a population of RNA enzymes
    • Hayden, E. J., Bratulic, S., Koenig, I., Ferrada, E. & Wagner, A. The effects of stabilizing and directional selection on phenotypic and genotypic variation in a population of RNA enzymes. J. Mol. Evol. 78, 101-108 (2014
    • (2014) J. Mol. Evol , vol.78 , pp. 101-108
    • Hayden, E.J.1    Bratulic, S.2    Koenig, I.3    Ferrada, E.4    Wagner, A.5
  • 48
    • 84887445694 scopus 로고    scopus 로고
    • Quantitative selection and parallel characterization of aptamers
    • Cho, M. et al. Quantitative selection and parallel characterization of aptamers. Proc. Natl Acad. Sci. USA 110, 18460-18465 (2013
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 18460-18465
    • Cho, M.1
  • 49
    • 84901804745 scopus 로고    scopus 로고
    • Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes
    • Buenrostro, J. D. et al. Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes. Nat. Biotech. 32, 562-568 (2014
    • (2014) Nat. Biotech , vol.32 , pp. 562-568
    • Buenrostro, J.D.1
  • 51
    • 0001519096 scopus 로고
    • Experiments with the Chemostat on spontaneous mutations of bacteria
    • Novick, A. & Szilard, L. Experiments with the Chemostat on spontaneous mutations of bacteria. Proc. Natl Acad. Sci. USA 36, 708-719 (1950
    • (1950) Proc. Natl Acad. Sci. USA , vol.36 , pp. 708-719
    • Novick, A.1    Szilard, L.2
  • 52
    • 84890116570 scopus 로고    scopus 로고
    • Long-term dynamics of adaptation in asexual populations
    • Wiser, M. J., Ribeck, N. & Lenski, R. E. Long-term dynamics of adaptation in asexual populations. Science 342, 1364-1367 (2013
    • (2013) Science , vol.342 , pp. 1364-1367
    • Wiser, M.J.1    Ribeck, N.2    Lenski, R.E.3
  • 53
    • 79956073707 scopus 로고    scopus 로고
    • Revealing the genetic structure of a trait by sequencing a population under selection
    • Parts, L. et al. Revealing the genetic structure of a trait by sequencing a population under selection. Genome Res. 21, 1131-1138 (2011
    • (2011) Genome Res , vol.21 , pp. 1131-1138
    • Parts, L.1
  • 54
    • 84886099953 scopus 로고    scopus 로고
    • High-resolution mapping of complex traits with a four-parent advanced intercross yeast population
    • Cubillos, F. A. et al. High-resolution mapping of complex traits with a four-parent advanced intercross yeast population. Genetics 195, 1141-1155 (2013
    • (2013) Genetics , vol.195 , pp. 1141-1155
    • Cubillos, F.A.1
  • 55
    • 84908150953 scopus 로고    scopus 로고
    • Sequencing pools of individuals - Mining genome-wide polymorphism data without big funding
    • Schlötterer, C., Tobler, R., Kofler, R. & Nolte, V. Sequencing pools of individuals - mining genome-wide polymorphism data without big funding. Nat. Rev. Genet. 15, 749-763 (2014
    • (2014) Nat. Rev. Genet , vol.15 , pp. 749-763
    • Schlötterer, C.1    Tobler, R.2    Kofler, R.3    Nolte, V.4
  • 56
    • 79957178522 scopus 로고
    • Apterisme de insects et selection naturelle
    • in French
    • L'Héritier, P. L., Neefs, Y. & Teissier, G. Apterisme De insects et selection naturelle. Compt. Rend. Acad. Sci. 204, 907-909 (1937) (in French
    • (1937) Compt. Rend. Acad. Sci , vol.204 , pp. 907-909
    • L'Héritier, P.L.1    Neefs, Y.2    Teissier, G.3
  • 58
    • 84867574655 scopus 로고    scopus 로고
    • Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles
    • Orozco-terWengel, P. et al. Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles. Mol. Ecol. 21, 4931-4941 (2012
    • (2012) Mol. Ecol , vol.21 , pp. 4931-4941
    • Orozco-TerWengel, P.1
  • 59
    • 59149100147 scopus 로고    scopus 로고
    • Experimental evolution reveals natural selection on standing genetic variation
    • Teotónio, H., Chelo, I. M., Bradic, M., Rose, M. R. & Long, A. D. Experimental evolution reveals natural selection on standing genetic variation. Nat. Genet. 41, 251-257 (2009
    • (2009) Nat. Genet , vol.41 , pp. 251-257
    • Teotónio, H.1    Chelo, I.M.2    Bradic, M.3    Rose, M.R.4    Long, A.D.5
  • 60
    • 84899067323 scopus 로고    scopus 로고
    • Host adaptation to viruses relies on few genes with different cross-resistance properties
    • Martins, N. E. et al. Host adaptation to viruses relies on few genes with different cross-resistance properties. Proc. Natl Acad. Sci. USA 111, 5938- 5943 (2014
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 5938-5943
    • Martins, N.E.1
  • 61
    • 0034707056 scopus 로고    scopus 로고
    • Variation in the reversibility of evolution
    • Teotónio, H. & Rose, M. R. Variation in the reversibility of evolution. Nature 408, 463-466 (2000
    • (2000) Nature , vol.408 , pp. 463-466
    • Teotónio, H.1    Rose, M.R.2
  • 63
    • 2542583245 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • Gerrish, P. J. & Lenski, R. E. The fate of competing beneficial mutations in an asexual population. Genetica 102-103, 127-144 (1998
    • (1998) Genetica 102-103 , pp. 127-144
    • Gerrish, P.J.1    Lenski, R.E.2
  • 64
    • 84883132678 scopus 로고    scopus 로고
    • Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
    • Lang, G. I. et al. Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations. Nature 500, 571-574 (2013)
    • (2013) Nature , vol.500 , pp. 571-574
    • Lang, G.I.1
  • 65
    • 33847314378 scopus 로고    scopus 로고
    • Beneficial mutation selection balance and the effect of linkage on positive selection
    • Desai, M. M. & Fisher, D. S. Beneficial mutation selection balance and the effect of linkage on positive selection. Genetics 176, 1759-1798 (2007
    • (2007) Genetics , vol.176 , pp. 1759-1798
    • Desai, M.M.1    Fisher, D.S.2
  • 66
    • 56749107039 scopus 로고    scopus 로고
    • Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae
    • Kao, K. C. & Sherlock, G. Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae. Nat. Genet. 40, 1499-1504 (2008
    • (2008) Nat. Genet , vol.40 , pp. 1499-1504
    • Kao, K.C.1    Sherlock, G.2
  • 67
    • 79960137718 scopus 로고    scopus 로고
    • Genetic variation and the fate of beneficial mutations in asexual populations
    • Lang, G. I., Botstein, D. & Desai, M. M. Genetic variation and the fate of beneficial mutations in asexual populations. Genetics 188, 647-661 (2011
    • (2011) Genetics , vol.188 , pp. 647-661
    • Lang, G.I.1    Botstein, D.2    Desai, M.M.3
  • 69
    • 84555171441 scopus 로고    scopus 로고
    • Evolutionary paths to antibiotic resistance under dynamically sustained drug selection
    • Toprak, E. et al. Evolutionary paths to antibiotic resistance under dynamically sustained drug selection. Nat. Genet. 44, 101-105 (2012
    • (2012) Nat. Genet , vol.44 , pp. 101-105
    • Toprak, E.1
  • 70
    • 79957948242 scopus 로고    scopus 로고
    • Negative epistasis between beneficial mutations in an evolving bacterial population
    • Khan, A. I. A., Dinh, D. M. D., Schneider, D. D., Lenski, R. E. R. & Cooper, T. F. T. Negative epistasis between beneficial mutations in an evolving bacterial population. Science 332, 1193-1196 (2011
    • (2011) Science , vol.332 , pp. 1193-1196
    • Khan, A.I.A.1    Dinh, D.M.D.2    Schneider, D.D.3    Lenski, R.E.R.4    Cooper, T.F.T.5
  • 71
    • 84924664063 scopus 로고    scopus 로고
    • Quantitative evolutionary dynamics using high-resolution lineage tracking
    • Levy, S. F. et al. Quantitative evolutionary dynamics using high-resolution lineage tracking. Nature 519, 181-186 (2015)
    • (2015) Nature , vol.519 , pp. 181-186
    • Levy, S.F.1
  • 72
    • 77951143253 scopus 로고    scopus 로고
    • Dissection of genetically complex traits with extremely large pools of yeast segregants
    • Ehrenreich, I. M. et al. Dissection of genetically complex traits with extremely large pools of yeast segregants. Nature 464, 1039-1042 (2011
    • (2011) Nature , vol.464 , pp. 1039-1042
    • Ehrenreich, I.M.1
  • 73
    • 0030791414 scopus 로고    scopus 로고
    • The advantage of sex in evolving yeast populations
    • Zeyl, C. & Bell, G. The advantage of sex in evolving yeast populations. Nature 388, 465-468 (1997
    • (1997) Nature , vol.388 , pp. 465-468
    • Zeyl, C.1    Bell, G.2
  • 74
    • 15844412621 scopus 로고    scopus 로고
    • Sex increases the efficacy of natural selection in experimental yeast populations
    • Goddard, M. R., Godfray, H. C. J. & Burt, A. Sex increases the efficacy of natural selection in experimental yeast populations. Nature 434, 636-640 (2005
    • (2005) Nature , vol.434 , pp. 636-640
    • Goddard, M.R.1    Godfray, H.C.J.2    Burt, A.3
  • 75
    • 84925014763 scopus 로고    scopus 로고
    • Standing genetic variation drives repeatable experimental evolution in outcrossing populations of Saccharomyces cerevisiae
    • Burke, M. K., Liti, G. & Long, A. D. Standing genetic variation drives repeatable experimental evolution in outcrossing populations of Saccharomyces cerevisiae. Mol. Biol. Evol. 31, 3228-3239 (2014
    • (2014) Mol. Biol. Evol , vol.31 , pp. 3228-3239
    • Burke, M.K.1    Liti, G.2    Long, A.D.3
  • 76
    • 84867554607 scopus 로고    scopus 로고
    • What paths do advantageous alleles take during short-term evolutionary change?
    • Burke, M. K. & Long, A. D. What paths do advantageous alleles take during short-term evolutionary change?. Mol. Ecol. 21, 4913-4916 (2012
    • (2012) Mol. Ecol. , vol.21 , pp. 4913-4916
    • Burke, M.K.1    Long, A.D.2
  • 77
    • 1942489258 scopus 로고    scopus 로고
    • Informational complexity and functional activity of RNA structures
    • Carothers, J. M., Oestreich, S. C., Davis, J. H. & Szostak, J. W. Informational complexity and functional activity of RNA structures. J. Am. Chem. Soc. 126, 5130-5137 (2004
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 5130-5137
    • Carothers, J.M.1    Oestreich, S.C.2    Davis, J.H.3    Szostak, J.W.4
  • 78
    • 84919764127 scopus 로고    scopus 로고
    • Limits of neutral drift: Lessons from the in vitro evolution of two ribozymes
    • Petrie, K. L. & Joyce, G. F. Limits of neutral drift: lessons from the in vitro evolution of two ribozymes. J. Mol. Evol. 79, 75-90 (2014
    • (2014) J. Mol. Evol , vol.79 , pp. 75-90
    • Petrie, K.L.1    Joyce, G.F.2
  • 79
    • 84856258903 scopus 로고    scopus 로고
    • The molecular diversity of adaptive convergence
    • Tenaillon, O. et al. The molecular diversity of adaptive convergence. Science 335, 457-461 (2012)
    • (2012) Science , vol.335 , pp. 457-461
    • Tenaillon, O.1
  • 80
    • 84896845939 scopus 로고    scopus 로고
    • The predictability of molecular evolution during functional innovation
    • Blank, D., Wolf, L., Ackermann, M. & Silander, O. K. The predictability of molecular evolution during functional innovation. Proc. Natl Acad. Sci. USA 111, 3044-3049 (2014
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 3044-3049
    • Blank, D.1    Wolf, L.2    Ackermann, M.3    Silander, O.K.4
  • 81
    • 84922862545 scopus 로고    scopus 로고
    • The genomic landscape of compensatory evolution
    • Szamecz, B. et al. The genomic landscape of compensatory evolution. PLoS Biol. 12, e1001935 (2014
    • (2014) PLoS Biol , vol.12 , pp. e1001935
    • Szamecz, B.1
  • 82
    • 84903291815 scopus 로고    scopus 로고
    • Microbial evolution Global epistasis makes adaptation predictable despite sequence-level stochasticity
    • Kryazhimskiy, S., Rice, D. P., Jerison, E. R. & Desai, M. M. Microbial evolution. Global epistasis makes adaptation predictable despite sequence-level stochasticity. Science 344, 1519-1522 (2014)
    • (2014) Science , vol.344 , pp. 1519-1522
    • Kryazhimskiy, S.1    Rice, D.P.2    Jerison, E.R.3    Desai, M.M.4
  • 83
    • 84930625055 scopus 로고    scopus 로고
    • Empirical determinants of adaptive mutations in yeast experimental evolution
    • Payen, C. et al. Empirical determinants of adaptive mutations in yeast experimental evolution. bioRxiv http://dx.doi.org/10.1101/014068 (2015
    • (2015) Bio. Rxiv
    • Payen, C.1
  • 84
    • 84908439725 scopus 로고    scopus 로고
    • Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli
    • Raeside, C. et al. Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli. mBio 5, e01377 14 (2014
    • (2014) M Bio5 , vol.14 , pp. e01377
    • Raeside, C.1
  • 85
    • 84888213196 scopus 로고    scopus 로고
    • Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment
    • Kvitek, D. J. & Sherlock, G. Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment. PLoS Genet. 9, e1003972 (2013
    • (2013) PLoS Genet , vol.9 , pp. e1003972
    • Kvitek, D.J.1    Sherlock, G.2
  • 86
    • 78650546051 scopus 로고    scopus 로고
    • RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media
    • Conrad, T. M. et al. RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media. Proc. Natl Acad. Sci. USA 107, 20500-20505 (2010
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 20500-20505
    • Conrad, T.M.1
  • 88
    • 84873521620 scopus 로고    scopus 로고
    • Dynamic large-scale chromosomal rearrangements fuel rapid adaptation in yeast populations
    • Chang, S. L., Lai, H. Y., Tung, S. Y. & Leu, J. Y. Dynamic large-scale chromosomal rearrangements fuel rapid adaptation in yeast populations. PLoS Genet. 9, e1003232 (2013
    • (2013) PLoS Genet , vol.9 , pp. e1003232
    • Chang, S.L.1    Lai, H.Y.2    Tung, S.Y.3    Leu, J.Y.4
  • 89
    • 58149166731 scopus 로고    scopus 로고
    • The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
    • Gresham, D. et al. The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. PLoS Genet. 4, e1000303 (2008
    • (2008) PLoS Genet , vol.4 , pp. e1000303
    • Gresham, D.1
  • 90
    • 84897883016 scopus 로고    scopus 로고
    • A high-definition view of functional genetic variation from natural yeast genomes
    • Bergström, A. et al. A high-definition view of functional genetic variation from natural yeast genomes. Mol. Biol. Evol. 31, 872-888 (2014
    • (2014) Mol. Biol. Evol , vol.31 , pp. 872-888
    • Bergström, A.1
  • 91
    • 84929658508 scopus 로고    scopus 로고
    • The 100 genomes strains, an S cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
    • Strope, P. K. et al. The 100 genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen. Genome Res. 25, 762-774 (2015
    • (2015) Genome Res , vol.25 , pp. 762-774
    • Strope, P.K.1
  • 92
    • 79959847334 scopus 로고    scopus 로고
    • Trait variation in yeast is defined by population history
    • Warringer, J. et al. Trait variation in yeast is defined by population history. PLoS Genet. 7, e1002111 (2011
    • (2011) PLoS Genet , vol.7 , pp. e1002111
    • Warringer, J.1
  • 93
    • 0842285397 scopus 로고    scopus 로고
    • Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments
    • Koszul, R., Caburet, S., Dujon, B. & Fischer, G. Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments. EMBO J. 23, 234-243 (2004
    • (2004) EMBO J. , vol.23 , pp. 234-243
    • Koszul, R.1    Caburet, S.2    Dujon, B.3    Fischer, G.4
  • 94
    • 84930668371 scopus 로고    scopus 로고
    • The fitness consequences of aneuploidy are driven by condition-dependent gene effects
    • Sunshine, A. B. et al. The fitness consequences of aneuploidy are driven by condition-dependent gene effects. PLoS Biol. 13, e1002155 (2015
    • (2015) PLoS Biol , vol.13 , pp. e1002155
    • Sunshine, A.B.1
  • 95
    • 77953754620 scopus 로고    scopus 로고
    • Yeast evolutionary genomics
    • Dujon, B. Yeast evolutionary genomics. Nat. Rev. Genet. 11, 512-524 (2010
    • (2010) Nat. Rev. Genet , vol.11 , pp. 512-524
    • Dujon, B.1
  • 96
    • 84897858777 scopus 로고    scopus 로고
    • The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms
    • Baldwin-Brown, J. G., Long, A. D. & Thornton, K. R. The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms. Mol. Biol. Evol. 31, 1040-1055 (2014
    • (2014) Mol. Biol. Evol , vol.31 , pp. 1040-1055
    • Baldwin-Brown, J.G.1    Long, A.D.2    Thornton, K.R.3
  • 97
    • 84893126398 scopus 로고    scopus 로고
    • A guide for the design of evolve and resequencing studies
    • Kofler, R. & Schlötterer, C. A guide for the design of evolve and resequencing studies. Mol. Biol. Evol. 31, 474-483 (2014
    • (2014) Mol. Biol. Evol , vol.31 , pp. 474-483
    • Kofler, R.1    Schlötterer, C.2
  • 98
    • 79951829399 scopus 로고    scopus 로고
    • Classic selective sweeps were rare in recent human evolution
    • Hernandez, R. D. et al. Classic selective sweeps were rare in recent human evolution. Science 331, 920-924 (2011
    • (2011) Science , vol.331 , pp. 920-924
    • Hernandez, R.D.1
  • 99
    • 79952263624 scopus 로고    scopus 로고
    • Pervasive adaptive protein evolution apparent in diversity patterns around amino acid substitutions in Drosophila simulans
    • Sattath, S., Elyashiv, E., Kolodny, O., Rinott, Y. & Sella, G. Pervasive adaptive protein evolution apparent in diversity patterns around amino acid substitutions in Drosophila simulans. PLoS Genet. 7, e1001302 (2011
    • (2011) PLoS Genet , vol.7 , pp. e1001302
    • Sattath, S.1    Elyashiv, E.2    Kolodny, O.3    Rinott, Y.4    Sella, G.5
  • 100
    • 84929497425 scopus 로고    scopus 로고
    • Natural selection constrains neutral diversity across a wide range of species
    • Corbett-Detig, R. B., Hartl, D. L. & Sackton, T. B. Natural selection constrains neutral diversity across a wide range of species. PLoS Biol. 13, e1002112 (2015
    • (2015) PLoS Biol , vol.13 , pp. e1002112
    • Corbett-Detig, R.B.1    Hartl, D.L.2    Sackton, T.B.3
  • 101
    • 0037417962 scopus 로고    scopus 로고
    • Parallel changes in gene expression after 20, 000 generations of evolution in Escherichia coli
    • Cooper, T. F., Rozen, D. E. & Lenski, R. E. Parallel changes in gene expression after 20, 000 generations of evolution in Escherichia coli. Proc. Natl Acad. Sci. USA 100, 1072-1077 (2003
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 1072-1077
    • Cooper, T.F.1    Rozen, D.E.2    Lenski, R.E.3
  • 102
    • 33747849237 scopus 로고    scopus 로고
    • Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli
    • Pelosi, L. et al. Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli. Genetics 173, 1851-1869 (2006
    • (2006) Genetics , vol.173 , pp. 1851-1869
    • Pelosi, L.1
  • 103
    • 84876437630 scopus 로고    scopus 로고
    • Synchronous waves of failed soft sweeps in the laboratory: Remarkably rampant clonal interference of alleles at a single locus
    • Lee, M. C. & Marx, C. J. Synchronous waves of failed soft sweeps in the laboratory: remarkably rampant clonal interference of alleles at a single locus. Genetics 193, 943-952 (2013
    • (2013) Genetics , vol.193 , pp. 943-952
    • Lee, M.C.1    Marx, C.J.2
  • 104
    • 84928258832 scopus 로고    scopus 로고
    • Simple phenotypic sweeps hide complex genetic changes in populations
    • Maharjan, R. P., Liu, B., Feng, L., Ferenci, T. & Wang, L. Simple phenotypic sweeps hide complex genetic changes in populations. Genome Biol. Evol. 7, 531-544 (2015
    • (2015) Genome Biol. Evol , vol.7 , pp. 531-544
    • Maharjan, R.P.1    Liu, B.2    Feng, L.3    Ferenci, T.4    Wang, L.5
  • 105
    • 37349107011 scopus 로고    scopus 로고
    • The genetic basis of parallel and divergent phenotypic responses in evolving populations of Escherichia coli
    • Ostrowski, E. A., Woods, R. J. & Lenski, R. E. The genetic basis of parallel and divergent phenotypic responses in evolving populations of Escherichia coli. Proc. Biol. Sci. 275, 277-284 (2008
    • (2008) Proc. Biol. Sci , vol.275 , pp. 277-284
    • Ostrowski, E.A.1    Woods, R.J.2    Lenski, R.E.3
  • 107
    • 84874346133 scopus 로고    scopus 로고
    • Evolutionary rescue from extinction is contingent on a lower rate of environmental change
    • Lindsey, H. A., Gallie, J., Taylor, S. & Kerr, B. Evolutionary rescue from extinction is contingent on a lower rate of environmental change. Nature 494, 463-467 (2013
    • (2013) Nature , vol.494 , pp. 463-467
    • Lindsey, H.A.1    Gallie, J.2    Taylor, S.3    Kerr, B.4
  • 108
    • 0035895278 scopus 로고    scopus 로고
    • Genetic architecture of thermal adaptation in Escherichia coli
    • Riehle, M. M., Bennett, A. F. & Long, A. D. Genetic architecture of thermal adaptation in Escherichia coli. Proc. Natl Acad. Sci. USA 98, 525-530 (2001
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 525-530
    • Riehle, M.M.1    Bennett, A.F.2    Long, A.D.3
  • 109
    • 78649694766 scopus 로고    scopus 로고
    • Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene
    • Charusanti, P. et al. Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene. PLoS Genet. 6, e1001186 (2010
    • (2010) PLoS Genet , vol.6 , pp. e1001186
    • Charusanti, P.1
  • 110
    • 84859899271 scopus 로고    scopus 로고
    • New insights into bacterial adaptation through in vivo and in silico experimental evolution
    • Hindré, T., Knibbe, C., Beslon, G. & Schneider, D. New insights into bacterial adaptation through in vivo and in silico experimental evolution. Nat. Rev. Microbiol. 10, 352-365 (2012
    • (2012) Nat. Rev. Microbiol , vol.10 , pp. 352-365
    • Hindré, T.1    Knibbe, C.2    Beslon, G.3    Schneider, D.4
  • 111
    • 79960104605 scopus 로고    scopus 로고
    • Microbial laboratory evolution in the era of genome-scale science
    • Conrad, T. M., Lewis, N. E. & Palsson, B. O.. Microbial laboratory evolution in the era of genome-scale science. Mol. Syst. Biol. 7, 509 (2011
    • (2011) Mol. Syst. Biol , vol.7 , Issue.509
    • Conrad, T.M.1    Lewis, N.E.2    Palsson, B.O.3
  • 112
    • 84959207087 scopus 로고    scopus 로고
    • The reproducibility of adaptation in the light of experimental evolution with whole genome sequencing
    • Achaz, G., Rodríguez-Verdugo, A., Gaut, B. S. & Tenaillon, O. The reproducibility of adaptation in the light of experimental evolution with whole genome sequencing. Adv. Exp. Med. Biol. 781, 211-231 (2014
    • (2014) Adv. Exp. Med. Biol , vol.781 , pp. 211-231
    • Achaz, G.1    Rodríguez-Verdugo, A.2    Gaut, B.S.3    Tenaillon, O.4
  • 113
    • 80052324811 scopus 로고    scopus 로고
    • Hunger artists: Yeast adapted to carbon limitation show trade-offs under carbon sufficiency
    • Wenger, J. W. et al. Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency. PLoS Genet. 7, e1002202 (2011
    • (2011) PLoS Genet , vol.7 , pp. e1002202
    • Wenger, J.W.1
  • 114
    • 85018189329 scopus 로고    scopus 로고
    • Principles of Population Genetics Sinauer Associates
    • Hartl, D. L. & Clark, A. G. Principles of Population Genetics (Sinauer Associates Incorporated, 2007
    • (2007) Incorporated
    • Hartl, D.L.1    Clark, A.G.2
  • 116
    • 0027180473 scopus 로고
    • An RNA motif that binds ATP
    • Sassanfar, M. & Szostak, J. W. An RNA motif that binds ATP. Nature 364, 550-553 (1993
    • (1993) Nature , vol.364 , pp. 550-553
    • Sassanfar, M.1    Szostak, J.W.2
  • 117
    • 0030833542 scopus 로고    scopus 로고
    • RNA aptamers to the adenosine moiety of S adenosyl methionine: Structural inferences from variations on a theme and the reproducibility of SELEX
    • Burke, D. H. & Gold, L. RNA aptamers to the adenosine moiety of S adenosyl methionine: structural inferences from variations on a theme and the reproducibility of SELEX. Nucleic Acids Res. 25, 2020-2024 (1997
    • (1997) Nucleic Acids Res , vol.25 , pp. 2020-2024
    • Burke, D.H.1    Gold, L.2
  • 118
    • 0034691283 scopus 로고    scopus 로고
    • RNA aptamers to S adenosylhomocysteine: Kinetic properties, divalent cation dependency, and comparison with anti S adenosylhomocysteine antibody
    • Gebhardt, K., Shokraei, A., Babaie, E. & Lindqvist, B. H. RNA aptamers to S adenosylhomocysteine: kinetic properties, divalent cation dependency, and comparison with anti S adenosylhomocysteine antibody. Biochemistry 39, 7255-7265 (2000
    • (2000) Biochemistry , vol.39 , pp. 7255-7265
    • Gebhardt, K.1    Shokraei, A.2    Babaie, E.3    Lindqvist, B.H.4
  • 119
    • 0027995790 scopus 로고
    • Isolation of RNA aptamers for biological cofactors by in vitro selection
    • Burgstaller, P. & Famulok, M. Isolation of RNA aptamers for biological cofactors by in vitro selection. Angew. Chem. Int. Ed. Engl. 33, 1084-1087 (1994
    • (1994) Angew. Chem. Int. Ed. Engl , vol.33 , pp. 1084-1087
    • Burgstaller, P.1    Famulok, M.2
  • 120
    • 84868037105 scopus 로고    scopus 로고
    • Convergent evolution of adenosine aptamers spanning bacterial, human, and random sequences revealed by structure-based bioinformatics and genomic SELEX
    • Vu, M. M. K. et al. Convergent evolution of adenosine aptamers spanning bacterial, human, and random sequences revealed by structure-based bioinformatics and genomic SELEX. Chem. Biol. 19, 1247-1254 (2012
    • (2012) Chem. Biol , vol.19 , pp. 1247-1254
    • Vu, M.M.K.1
  • 121
    • 0035498871 scopus 로고    scopus 로고
    • In vitro evolution suggests multiple origins for the hammerhead ribozyme
    • Salehi-Ashtiani, K. & Szostak, J. W. In vitro evolution suggests multiple origins for the hammerhead ribozyme. Nature 414, 82-84 (2001
    • (2001) Nature , vol.414 , pp. 82-84
    • Salehi-Ashtiani, K.1    Szostak, J.W.2
  • 122
    • 78650501783 scopus 로고    scopus 로고
    • From alpaca to zebrafish: Hammerhead ribozymes wherever you look
    • Seehafer, C., Kalweit, A., Steger, G., Gräf, S. & Hammann, C. From alpaca to zebrafish: hammerhead ribozymes wherever you look. RNA 17, 21-26 (2011
    • (2011) RNA , vol.17 , pp. 21-26
    • Seehafer, C.1    Kalweit, A.2    Steger, G.3    Gräf, S.4    Hammann, C.5
  • 123
    • 79953141245 scopus 로고    scopus 로고
    • Structure-based search reveals hammerhead ribozymes in the human microbiome
    • Jimenez, R. M., Delwart, E. & Lupták, A. Structure-based search reveals hammerhead ribozymes in the human microbiome. J. Biol. Chem. 286, 7737-7743 (2011
    • (2011) J. Biol. Chem , vol.286 , pp. 7737-7743
    • Jimenez, R.M.1    Delwart, E.2    Lupták, A.3
  • 124
    • 79953002042 scopus 로고    scopus 로고
    • Identification of hammerhead ribozymes in all domains of life reveals novel structural variations
    • Perreault, J. et al. Identification of hammerhead ribozymes in all domains of life reveals novel structural variations. PLoS Comput. Biol. 7, e1002031 (2011
    • (2011) PLoS Comput. Biol , vol.7 , pp. e1002031
    • Perreault, J.1
  • 125
    • 84883555097 scopus 로고    scopus 로고
    • Epistatic interactions determine the mutational pathways and coexistence of lineages in clonal Escherichia coli populations
    • Maharjan, R. P. & Ferenci, T. Epistatic interactions determine the mutational pathways and coexistence of lineages in clonal Escherichia coli populations. Evolution 67, 2762-2768 (2013
    • (2013) Evolution , vol.67 , pp. 2762-2768
    • Maharjan, R.P.1    Ferenci, T.2
  • 126
    • 84901742626 scopus 로고    scopus 로고
    • Mapping the fitness landscape of gene expression uncovers the cause of antagonism and sign epistasis between adaptive mutations
    • Chou, H. H., Delaney, N. F., Draghi, J. A. & Marx, C. J. Mapping the fitness landscape of gene expression uncovers the cause of antagonism and sign epistasis between adaptive mutations. PLoS Genet. 10, e1004149 (2014
    • (2014) PLoS Genet , vol.10 , pp. e1004149
    • Chou, H.H.1    Delaney, N.F.2    Draghi, J.A.3    Marx, C.J.4
  • 127
    • 84941941076 scopus 로고    scopus 로고
    • The valley-of death: Reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment
    • Chiotti, K. E. et al. The valley-of death: reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment. Genomics 104, 431-437 (2014
    • (2014) Genomics , vol.104 , pp. 431-437
    • Chiotti, K.E.1
  • 128
    • 79955590028 scopus 로고    scopus 로고
    • Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape
    • Kvitek, D. J. & Sherlock, G. Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape. PLoS Genet. 7, e1002056 (2011
    • (2011) PLoS Genet , vol.7 , pp. e1002056
    • Kvitek, D.J.1    Sherlock, G.2
  • 130
    • 79957944389 scopus 로고    scopus 로고
    • Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme
    • Hayden, E. J., Ferrada, E. & Wagner, A. Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme. Nature 474, 92-95 (2011
    • (2011) Nature , vol.474 , pp. 92-95
    • Hayden, E.J.1    Ferrada, E.2    Wagner, A.3
  • 132
    • 84910644858 scopus 로고    scopus 로고
    • The utility of Fisher's geometric model in evolutionary genetics
    • Tenaillon, O. The utility of Fisher's geometric model in evolutionary genetics. Annu. Rev. Ecol. Evol. Syst. 45, 179-201 (2014
    • (2014) Annu. Rev. Ecol. Evol. Syst , vol.45 , pp. 179-201
    • Tenaillon, O.1
  • 133
    • 16344391209 scopus 로고    scopus 로고
    • Theories of adaptation: What they do and don't say
    • Orr, H. A. Theories of adaptation: what they do and don't say. Genetica 123, 3-13 (2005
    • (2005) Genetica , vol.123 , pp. 3-13
    • Orr, H.A.1
  • 134
    • 84923532949 scopus 로고    scopus 로고
    • The rule of declining adaptability in microbial evolution experiments
    • Couce, A. & Tenaillon, O. A. The rule of declining adaptability in microbial evolution experiments. Front. Genet. 6, 1-6 (2015
    • (2015) Front. Genet , vol.6 , pp. 1-6
    • Couce, A.1    Tenaillon, O.A.2
  • 135
    • 23344432889 scopus 로고    scopus 로고
    • Epistasis and the adaptability of an RNA virus
    • Sanjuán, R., Cuevas, J. M., Moya, A. & Elena, S. F. Epistasis and the adaptability of an RNA virus. Genetics 170, 1001-1008 (2005
    • (2005) Genetics , vol.170 , pp. 1001-1008
    • Sanjuán, R.1    Cuevas, J.M.2    Moya, A.3    Elena, S.F.4
  • 136
    • 70449533747 scopus 로고    scopus 로고
    • The genetics of adaptation for eight microvirid bacteriophages
    • Rokyta, D. R., Abdo, Z. & Wichman, H. A. The genetics of adaptation for eight microvirid bacteriophages. J. Mol. Evol. 69, 229-239 (2009
    • (2009) J. Mol. Evol , vol.69 , pp. 229-239
    • Rokyta, D.R.1    Abdo, Z.2    Wichman, H.A.3
  • 137
    • 84890874862 scopus 로고    scopus 로고
    • Rates of fitness decline and rebound suggest pervasive epistasis
    • Perfeito, L., Sousa, A., Bataillon, T. & Gordo, I. Rates of fitness decline and rebound suggest pervasive epistasis. Evolution 68, 150-162 (2014
    • (2014) Evolution , vol.68 , pp. 150-162
    • Perfeito, L.1    Sousa, A.2    Bataillon, T.3    Gordo, I.4
  • 138
    • 0034615640 scopus 로고    scopus 로고
    • Pervasive compensatory adaptation in Escherichia coli
    • Moore, F. B., Rozen, D. E. & Lenski, R. E. Pervasive compensatory adaptation in Escherichia coli. Proc. Biol. Sci. 267, 515-522 (2000
    • (2000) Proc. Biol. Sci , vol.267 , pp. 515-522
    • Moore, F.B.1    Rozen, D.E.2    Lenski, R.E.3
  • 139
    • 79251553136 scopus 로고    scopus 로고
    • Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa
    • MacLean, R. C., Perron, G. G. & Gardner, A. Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa. Genetics 186, 1345-1354 (2010
    • (2010) Genetics , vol.186 , pp. 1345-1354
    • MacLean, R.C.1    Perron, G.G.2    Gardner, A.3
  • 140
    • 0034035485 scopus 로고    scopus 로고
    • Big-benefit mutations in a bacteriophage inhibited with heat
    • Bull, J. J., Badgett, M. R. & Wichman, H. A. Big-benefit mutations in a bacteriophage inhibited with heat. Mol. Biol. Evol. 17, 942-950 (2000
    • (2000) Mol. Biol. Evol , vol.17 , pp. 942-950
    • Bull, J.J.1    Badgett, M.R.2    Wichman, H.A.3
  • 141
    • 33645666942 scopus 로고    scopus 로고
    • Darwinian evolution can follow only very few mutational paths to fitter proteins
    • Weinreich, D. M., Delaney, N. F., DePristo, M. A. & Hartl, D. L. Darwinian evolution can follow only very few mutational paths to fitter proteins. Science 312, 111-114 (2006
    • (2006) Science , vol.312 , pp. 111-114
    • Weinreich, D.M.1    Delaney, N.F.2    DePristo, M.A.3    Hartl, D.L.4
  • 142
    • 79957958115 scopus 로고    scopus 로고
    • Diminishing returns epistasis among beneficial mutations decelerates adaptation
    • Chou, H. H., Chiu, H. C., Delaney, N. F., Segrè, D. & Marx, C. J. Diminishing returns epistasis among beneficial mutations decelerates adaptation. Science 332, 1190-1192 (2011
    • (2011) Science , vol.332 , pp. 1190-1192
    • Chou, H.H.1    Chiu, H.C.2    Delaney, N.F.3    Segrè, D.4    Marx, C.J.5
  • 143
    • 20144371089 scopus 로고    scopus 로고
    • Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles
    • Colosimo, P. F. et al. Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles. Science 307, 1928-1933 (2005
    • (2005) Science , vol.307 , pp. 1928-1933
    • Colosimo, P.F.1
  • 144
    • 84897389131 scopus 로고    scopus 로고
    • The first steps of adaptation of Escherichia coli to the gut are dominated by soft sweeps
    • Barroso-Batista, J. et al. The first steps of adaptation of Escherichia coli to the gut are dominated by soft sweeps. PLoS Genet. 10, e1004182 (2014
    • (2014) PLoS Genet , vol.10 , pp. e1004182
    • Barroso-Batista, J.1
  • 145
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • Kimura, M. Evolutionary rate at the molecular level. Nature 217, 624-626 (1968
    • (1968) Nature , vol.217 , pp. 624-626
    • Kimura, M.1
  • 146
    • 84882819040 scopus 로고
    • A mathematical theory of natural & artificial selection part X Some theorems on artificial selection
    • Haldane, J. B. A mathematical theory of natural & artificial selection part X. Some theorems on artificial selection. Genetics 19, 412-429 (1934
    • (1934) Genetics , vol.19 , pp. 412-429
    • Haldane, J.B.1
  • 148
    • 84907495396 scopus 로고    scopus 로고
    • The conserved nhaAR operon is drastically divergent between B2 and non B2 Escherichia coli and is involved in extra-intestinal virulence
    • Lescat, M. et al. The conserved nhaAR operon is drastically divergent between B2 and non B2 Escherichia coli and is involved in extra-intestinal virulence. PLoS ONE 9, e108738 (2014
    • (2014) PLoS ONE , vol.9 , pp. e108738
    • Lescat, M.1


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