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Volumn 186, Issue 4, 2010, Pages 1345-1354

Diminishing returns from beneficial mutations and pervasive epistasis shape the fitness landscape for rifampicin resistance in Pseudomonas aeruginosa

Author keywords

[No Author keywords available]

Indexed keywords

RIFAMPICIN;

EID: 79251553136     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.110.123083     Document Type: Article
Times cited : (132)

References (45)
  • 1
    • 70350195337 scopus 로고    scopus 로고
    • Gene amplification and adaptive evolution in bacteria
    • ANDERSSON, D. I., and D. HUGHES, 2009 Gene amplification and adaptive evolution in bacteria. Annu. Rev. Genet. 43: 167-195.
    • (2009) Annu. Rev. Genet. , vol.43 , pp. 167-195
    • Andersson, D.I.1    Hughes, D.2
  • 2
    • 77949569493 scopus 로고    scopus 로고
    • Antibiotic resistance and its cost: Is it possible to reverse resistance?
    • ANDERSSON, D. I., and D. HUGHES, 2010 Antibiotic resistance and its cost: Is it possible to reverse resistance? Nat. Rev. Microbiol. 8: 260-271.
    • (2010) Nat. Rev. Microbiol. , vol.8 , pp. 260-271
    • Andersson, D.I.1    Hughes, D.2
  • 3
    • 33645112661 scopus 로고    scopus 로고
    • Mutations of intermediate effect are responsible for adaptation in evolving population of Pseudomonas fluorescens
    • BARRETT, R. D. H., R. C. MACLEAN and G. BELL, 2006 Mutations of intermediate effect are responsible for adaptation in evolving population of Pseudomonas fluorescens. Biol. Lett. 2: 236-238.
    • (2006) Biol. Lett. , vol.2 , pp. 236-238
    • Barrett, R.D.H.1    Maclean, R.C.2    Bell, G.3
  • 4
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with Escherichia coli
    • BARRICK, J. E., D. S. YU, S. H. YOON, H. JEONG, T. K. OH et al., 2009 Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461: 1243-1247.
    • (2009) Nature , vol.461 , pp. 1243-1247
    • Barrick, J.E.1    Yu, D.S.2    Yoon, S.H.3    Jeong, H.4    Oh, T.K.5
  • 8
    • 0034035485 scopus 로고    scopus 로고
    • Big-benefit mutations in a bacteriophage inhibited with heat
    • BULL, J. J., M. R. BADGETT and H. A. WICHMAN, 2000 Big-benefit mutations in a bacteriophage inhibited with heat. Mol. Biol. Evol. 17: 942-950.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 942-950
    • Bull, J.J.1    Badgett, M.R.2    Wichman, H.A.3
  • 9
    • 0035937403 scopus 로고    scopus 로고
    • Structural mechanism for rifampicin inhibition of bacterial RNA polymerase
    • CAMPBELL, E. A., N. KORZHEVA, A. MUSTAEV, K. MURAKAMI, S. NAIR et al., 2001 Structural mechanism for rifampicin inhibition of bacterial RNA polymerase. Cell 104: 901-912.
    • (2001) Cell , vol.104 , pp. 901-912
    • Campbell, E.A.1    Korzheva, N.2    Mustaev, A.3    Murakami, K.4    Nair, S.5
  • 10
    • 15444374664 scopus 로고    scopus 로고
    • Structural, functional, and genetic analysis of sorangicin inhibition of bacterial RNA polymerase
    • CAMPBELL, E. A., O. PAVLOVA, N. ZENKIN, F. LEON, H. IRSCHIK et al., 2005 Structural, functional, and genetic analysis of sorangicin inhibition of bacterial RNA polymerase. EMBO J. 24: 674-682.
    • (2005) EMBO J. , vol.24 , pp. 674-682
    • Campbell, E.A.1    Pavlova, O.2    Zenkin, N.3    Leon, F.4    Irschik, H.5
  • 11
    • 68549127130 scopus 로고    scopus 로고
    • Exploring the effect of sex on empirical fitness landscapes
    • DE VISSER, J., S. C. PARK and J. KRUG, 2009 Exploring the effect of sex on empirical fitness landscapes. Am. Nat. 174: S15-S30.
    • (2009) Am. Nat. , vol.174
    • De Visser, J.1    Park, S.C.2    Krug, J.3
  • 12
    • 0038441327 scopus 로고    scopus 로고
    • Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation
    • ELENA, S. F., and R. E. LENSKI, 2003 Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4: 457-469.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 457-469
    • Elena, S.F.1    Lenski, R.E.2
  • 13
    • 2642589991 scopus 로고    scopus 로고
    • Evolutionary dynamics of fitness recovery from the debilitating effects of Muller's ratchet
    • ELENA, S. F., M. DAVILA, I. S. NOVELLA, J. J. HOLLAND, E. DOMINGO et al., 1998 Evolutionary dynamics of fitness recovery from the debilitating effects of Muller's ratchet. Evolution 52: 309-314.
    • (1998) Evolution , vol.52 , pp. 309-314
    • Elena, S.F.1    Davila, M.2    Novella, I.S.3    Holland, J.J.4    Domingo, E.5
  • 14
    • 34447546660 scopus 로고    scopus 로고
    • The distribution of fitness effects of new mutations
    • EYRE-WALKER, A., and P. D. KEIGHTLEY, 2007 The distribution of fitness effects of new mutations. Nat. Rev. Genet. 8: 610-618.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 610-618
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 16
    • 0037435421 scopus 로고    scopus 로고
    • Use of the rpoB gene to determine the specificity of base substitution mutations on the Escherichia coli chromosome
    • Amst.
    • GARIBYAN, L., T. HUANG, M. KIM, E. WOLFF, A. NGUYEN et al., 2003 Use of the rpoB gene to determine the specificity of base substitution mutations on the Escherichia coli chromosome. DNA Repair (Amst.) 2: 593-608.
    • (2003) DNA Repair , vol.2 , pp. 593-608
    • Garibyan, L.1    Huang, T.2    Kim, M.3    Wolff, E.4    Nguyen, A.5
  • 17
    • 0001824940 scopus 로고
    • Natural selection, kin selection and group selection
    • Ed. 2, edited by J. R. KREBS and N. B. DAVIES. Blackwell Scientific Publications, Oxford
    • GRAFEN, A., 1984 Natural selection, kin selection and group selection, pp. 62-84 in Behavioural Ecology, Ed. 2, edited by J. R. KREBS and N. B. DAVIES. Blackwell Scientific Publications, Oxford.
    • (1984) Behavioural Ecology , pp. 62-84
    • Grafen, A.1
  • 18
    • 84955349191 scopus 로고
    • A mathematical theory of natural and arti- ficial selection. V. Selection and mutation
    • HALDANE, J. B. S., 1927 A mathematical theory of natural and arti- ficial selection. V. Selection and mutation. Proc. Camb. Phil. Soc. 23: 838-844.
    • (1927) Proc. Camb. Phil. Soc. , vol.23 , pp. 838-844
    • Haldane, J.B.S.1
  • 19
    • 76249120209 scopus 로고    scopus 로고
    • Mutational neighbourhood and mutation supply rate constrain adaptation in Pseudomonas aeruginosa
    • HALL, A. R., V. F. GRIFFITHS, R. C. MACLEAN and N. COLEGRAVE, 2010 Mutational neighbourhood and mutation supply rate constrain adaptation in Pseudomonas aeruginosa. Proc. R. Soc. B Biol. Sci. 277: 643-650.
    • (2010) Proc. R. Soc. B Biol. Sci. , vol.277 , pp. 643-650
    • Hall, A.R.1    Griffiths, V.F.2    Maclean, R.C.3    Colegrave, N.4
  • 21
    • 33645076253 scopus 로고    scopus 로고
    • An equivalence principle for the incorporation of favorable mutations in asexual populations
    • HEGRENESS, M., N. SHORESH, D. HARTL and R. KISHONY, 2006 An equivalence principle for the incorporation of favorable mutations in asexual populations. Science 311: 1615-1617.
    • (2006) Science , vol.311 , pp. 1615-1617
    • Hegreness, M.1    Shoresh, N.2    Hartl, D.3    Kishony, R.4
  • 22
    • 0035970061 scopus 로고    scopus 로고
    • Fitness effects of advantageous mutations in evolving Escherichia coli populations
    • IMHOF, M., and C. SCHLOTTERER, 2001 Fitness effects of advantageous mutations in evolving Escherichia coli populations. Proc. Natl. Acad. Sci. USA 98: 1113-1117.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 1113-1117
    • Imhof, M.1    Schlotterer, C.2
  • 24
    • 0001498391 scopus 로고
    • Experimental studies of pleiotropy and epistasis in Escherichia coli. II. Compensation for maladaptive effects associated with resistance to virus T4
    • LENSKI, R. E., 1988 Experimental studies of pleiotropy and epistasis in Escherichia coli. II. Compensation for maladaptive effects associated with resistance to virus T4. Evolution 42: 433-440.
    • (1988) Evolution , vol.42 , pp. 433-440
    • Lenski, R.E.1
  • 25
    • 0028365256 scopus 로고
    • Dynamics of adaptation and diversification: A 10,000 generation experiment with bacterial populations
    • LENSKI, R. E., and M. TRAVISANO, 1994 Dynamics of adaptation and diversification: a 10,000 generation experiment with bacterial populations. Proc. Natl. Acad. Sci. USA 91: 6808-6814.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 6808-6814
    • Lenski, R.E.1    Travisano, M.2
  • 26
    • 62149084484 scopus 로고    scopus 로고
    • The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa
    • MACLEAN, R. C., and A. BUCKLING, 2009 The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa. PLoS Genet. 5: e1000406.
    • (2009) PLoS Genet. , vol.5
    • Maclean, R.C.1    Buckling, A.2
  • 27
    • 77952556349 scopus 로고    scopus 로고
    • The population genetics of antibiotic resistance: Integrating molecular mechanisms and treatment contexts
    • MACLEAN, R. C., A. R. HALL, G. G. PERRON and A. BUCKLING, 2010 The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts. Nat. Rev. Genet. 11: 405-414.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 405-414
    • Maclean, R.C.1    Hall, A.R.2    Perron, G.G.3    Buckling, A.4
  • 28
    • 49849084622 scopus 로고    scopus 로고
    • The distribution of beneficial and fixed mutation fitness effects close to an optimum
    • MARTIN, G., and T. LENORMAND, 2008 The distribution of beneficial and fixed mutation fitness effects close to an optimum. Genetics 179: 907-916.
    • (2008) Genetics , vol.179 , pp. 907-916
    • Martin, G.1    Lenormand, T.2
  • 29
    • 0029072721 scopus 로고
    • Exponential increases of RNA virus fitness during large population transmissions
    • NOVELLA, I. S., E. A. DUARTE, S. F. ELENA, A.MOYA, E.DOMINGO et al., 1995 Exponential increases of RNA virus fitness during large population transmissions. Proc. Natl. Acad. Sci. USA 92: 5841-5844.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 5841-5844
    • Novella, I.S.1    Duarte, E.A.2    Elena, S.F.3    Moya, A.4    Domingo, E.5
  • 30
    • 0031714655 scopus 로고    scopus 로고
    • The population genetics of adaptation: The distribution of factors fixed during adaptive evolution
    • ORR, H. A., 1998 The population genetics of adaptation: the distribution of factors fixed during adaptive evolution. Evolution 52: 935-949.
    • (1998) Evolution , vol.52 , pp. 935-949
    • Orr, H.A.1
  • 31
    • 0036340979 scopus 로고    scopus 로고
    • The population genetics of adaptation: The adaptation of DNA sequences
    • ORR, H. A., 2002 The population genetics of adaptation: the adaptation of DNA sequences. Evolution 56: 1317-1330. (Pubitemid 34881586)
    • (2002) Evolution , vol.56 , Issue.7 , pp. 1317-1330
    • Orr, H.A.1
  • 32
    • 13144257707 scopus 로고    scopus 로고
    • The genetic theory of adaptation: A brief history
    • ORR, H. A., 2005 The genetic theory of adaptation: a brief history. Nat. Rev. Genet. 6: 119-127.
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 119-127
    • Orr, H.A.1
  • 33
    • 34347332282 scopus 로고    scopus 로고
    • Variable epistatic effects between mutations at host recognition sites in phi x174 bacteriophage
    • PEPIN, K. M., and H. A. WICHMAN, 2007 Variable epistatic effects between mutations at host recognition sites in phi x174 bacteriophage. Evolution 61: 1710-1724.
    • (2007) Evolution , vol.61 , pp. 1710-1724
    • Pepin, K.M.1    Wichman, H.A.2
  • 34
    • 34547924819 scopus 로고    scopus 로고
    • Adaptive mutations in bacteria: High rate and small effects
    • PERFEITO, L., L. FERNANDES, C.MOTA and I. GORDO, 2007 Adaptive mutations in bacteria: high rate and small effects. Science 317: 813-815.
    • (2007) Science , vol.317 , pp. 813-815
    • Perfeito, L.1    Fernandes, L.2    Mota, C.3    Gordo, I.4
  • 35
    • 33846551980 scopus 로고    scopus 로고
    • Empirical fitness landscapes reveal accessible evolutionary paths
    • POELWIJK, F. J., D. J. KIVIET, D. M. WEINREICH and S. J. TANS, 2007 Empirical fitness landscapes reveal accessible evolutionary paths. Nature 445: 383-386.
    • (2007) Nature , vol.445 , pp. 383-386
    • Poelwijk, F.J.1    Kiviet, D.J.2    Weinreich, D.M.3    Tans, S.J.4
  • 36
    • 16844369125 scopus 로고    scopus 로고
    • An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus
    • ROKYTA, D. R., P. JOYCE, S. B. CAUDLE and H. A. WICHMAN, 2005 An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus. Nat. Genet. 37: 441-444.
    • (2005) Nat. Genet. , vol.37 , pp. 441-444
    • Rokyta, D.R.1    Joyce, P.2    Caudle, S.B.3    Wichman, H.A.4
  • 37
    • 0037172667 scopus 로고    scopus 로고
    • Fitness effects of fixed beneficial mutations in microbial populations
    • ROZEN, D. E., J. A. DE VISSER and P. J. GERRISH, 2002 Fitness effects of fixed beneficial mutations in microbial populations. Curr. Biol. 12: 1040-1045.
    • (2002) Curr. Biol. , vol.12 , pp. 1040-1045
    • Rozen, D.E.1    De Visser, J.A.2    Gerrish, P.J.3
  • 38
    • 67651204792 scopus 로고    scopus 로고
    • Bacterial gene amplifi- Cation: Implications for the evolution of antibiotic resistance
    • SANDEGREN, L., and D. I. ANDERSSON, 2009 Bacterial gene amplifi- cation: implications for the evolution of antibiotic resistance. Nat. Rev. Microbiol. 7: 578-588.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 578-588
    • Sandegren, L.1    Andersson, D.I.2
  • 39
    • 72949085559 scopus 로고    scopus 로고
    • The properties of adaptive walks in evolving populations of fungus
    • SCHOUSTRA, S. E., T. BATAILLON, D. R. GIFFORD and R. KASSEN, 2009 The properties of adaptive walks in evolving populations of fungus. PLoS Biol. 7: e1000250.
    • (2009) PLoS Biol. , vol.7
    • Schoustra, S.E.1    Bataillon, T.2    Gifford, D.R.3    Kassen, R.4
  • 40
    • 70350173307 scopus 로고    scopus 로고
    • Contribution of gene amplification to evolution of increased antibiotic resistance in Salmonella typhimurium
    • SUN, S., O. G. BERG, J. R. ROTH and D. I. ANDERSSON, 2009 Contribution of gene amplification to evolution of increased antibiotic resistance in Salmonella typhimurium. Genetics 182: 1183-1195.
    • (2009) Genetics , vol.182 , pp. 1183-1195
    • Sun, S.1    Berg, O.G.2    Roth, J.R.3    Andersson, D.I.4
  • 42
    • 33645119890 scopus 로고    scopus 로고
    • Structural perspective on mutations affecting the function of multisubunit RNA polymerases. Microbiol
    • TRINH, V., M. F. LANGELIER, J. ARCHAMBAULT and B. COULOMBE, 2006 Structural perspective on mutations affecting the function of multisubunit RNA polymerases. Microbiol. Mol. Biol. Rev. 70: 12-36.
    • (2006) Mol. Biol. Rev. , vol.70 , pp. 12-36
    • Trinh, V.1    Langelier, M.F.2    Archambault, J.3    Coulombe, B.4
  • 43
    • 65249103440 scopus 로고    scopus 로고
    • The fitness cost of multiple drug resistance in Pseudomonas aeruginosa
    • WARD, H., G. PERRON and R. C. MACLEAN, 2009 The fitness cost of multiple drug resistance in Pseudomonas aeruginosa. J. Evol. Biol. 22: 997-1003.
    • (2009) J. Evol. Biol. , vol.22 , pp. 997-1003
    • Ward, H.1    Perron, G.2    Maclean, R.C.3
  • 44
    • 21044435697 scopus 로고    scopus 로고
    • Perspective: Sign epistasis and genetic constraint on evolutionary trajectories
    • WEINREICH, D. M., R. A. WATSON and L. CHAO, 2005 Perspective: sign epistasis and genetic constraint on evolutionary trajectories. Evolution 59: 1165-1174.
    • (2005) Evolution , vol.59 , pp. 1165-1174
    • Weinreich, D.M.1    Watson, R.A.2    Chao, L.3
  • 45
    • 33645666942 scopus 로고    scopus 로고
    • Darwinian evolution can follow only very fesw mutational paths to fitter proteins
    • WEINREICH, D. M., N. F. DELANEY, M. A. DEPRISTO and D. L. HARTL, 2006 Darwinian evolution can follow only very fesw mutational paths to fitter proteins. Science 312: 111-114.
    • (2006) Science , vol.312 , pp. 111-114
    • Weinreich, D.M.1    Delaney, N.F.2    Depristo, M.A.3    Hartl, D.L.4


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