-
1
-
-
77649263292
-
Population genetic inference from genomic sequence variation
-
Pool JE, Hellmann I, Jensen JD, Nielsen R, (2010) Population genetic inference from genomic sequence variation. Genome Research 20: 291–300. doi: 10.1101/gr.079509.108 20067940
-
(2010)
Genome Research
, vol.20
, pp. 291-300
-
-
Pool, J.E.1
Hellmann, I.2
Jensen, J.D.3
Nielsen, R.4
-
2
-
-
84899633396
-
Defining functional DNA elements in the human genome
-
Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, et al. (2014) Defining functional DNA elements in the human genome. Proceedings of the National Academy of Sciences 111: 6131–6138. doi: 10.1073/pnas.1318948111 24753594
-
(2014)
Proceedings of the National Academy of Sciences
, vol.111
, pp. 6131-6138
-
-
Kellis, M.1
Wold, B.2
Snyder, M.P.3
Bernstein, B.E.4
Kundaje, A.5
-
3
-
-
29444452921
-
Molecular signatures of natural selection
-
Nielsen R, (2005) Molecular signatures of natural selection. Annu Rev Genet 39: 197–218. 16285858
-
(2005)
Annu Rev Genet
, vol.39
, pp. 197-218
-
-
Nielsen, R.1
-
4
-
-
42349112088
-
Genome-wide association studies for complex traits: consensus, uncertainty and challenges
-
McCarthy MI, Abecasis GR, Cardon LR, Goldstein DB, Little J, et al. (2008) Genome-wide association studies for complex traits: consensus, uncertainty and challenges. Nat Rev Genet 9: 356–369. doi: 10.1038/nrg2344 18398418
-
(2008)
Nat Rev Genet
, vol.9
, pp. 356-369
-
-
McCarthy, M.I.1
Abecasis, G.R.2
Cardon, L.R.3
Goldstein, D.B.4
Little, J.5
-
7
-
-
0034082076
-
Genetic Drift in an Infinite Population: The Pseudohitchhiking Model
-
Gillespie JH, (2000) Genetic Drift in an Infinite Population: The Pseudohitchhiking Model. Genetics 155: 909–919. 10835409
-
(2000)
Genetics
, vol.155
, pp. 909-919
-
-
Gillespie, J.H.1
-
8
-
-
84866690688
-
Revisiting an Old Riddle: What Determines Genetic Diversity Levels within Species?
-
Leffler EM, Bullaughey K, Matute DR, Meyer WK, Ségurel L, et al. (2012) Revisiting an Old Riddle: What Determines Genetic Diversity Levels within Species? PLoS Biol 10: e1001388. doi: 10.1371/journal.pbio.1001388 22984349
-
(2012)
PLoS Biol
, vol.10
, pp. 1001388
-
-
Leffler, E.M.1
Bullaughey, K.2
Matute, D.R.3
Meyer, W.K.4
Ségurel, L.5
-
9
-
-
0002426650
-
-
Nevo E, Beiles A, Ben-Shlomo R, Mani GS, (1984) The evolutionary significance of genetic diversity: ecological, demographic and life history correlates. In: Evolutionary Dynamics of Genetic Diversity. Berlin: Springer. pp. 13–213.
-
(1984)
Evolutionary Dynamics of Genetic Diversity
, pp. 13-213
-
-
Nevo, E.1
Beiles, A.2
Ben-Shlomo, R.3
Mani, G.S.4
-
10
-
-
58149333880
-
The Cellular, Developmental and Population-Genetic Determinants of Mutation-Rate Evolution
-
Lynch M, (2008) The Cellular, Developmental and Population-Genetic Determinants of Mutation-Rate Evolution. Genetics 180: 933–943. doi: 10.1534/genetics.108.090456 18757919
-
(2008)
Genetics
, vol.180
, pp. 933-943
-
-
Lynch, M.1
-
11
-
-
23244450550
-
Large variance in reproductive sucess and the Ne/N ratio
-
Hedrick P, (2005) Large variance in reproductive sucess and the Ne/N ratio. Evolution 59: 1596–1599. 16153045
-
(2005)
Evolution
, vol.59
, pp. 1596-1599
-
-
Hedrick, P.1
-
12
-
-
0031408602
-
Fluctuating population size and the ratio of effective to census population size
-
Vucetich JA, Waite TA, Nunney L, (1997) Fluctuating population size and the ratio of effective to census population size. Evolution 51: 2017.
-
(1997)
Evolution
, vol.51
, pp. 2017
-
-
Vucetich, J.A.1
Waite, T.A.2
Nunney, L.3
-
13
-
-
84922016356
-
Comparative population genomics in animals uncovers the determinants of genetic diversity
-
Romiguier J, Gayral P, Ballenghien M, Bernard A, Cahais V, et al. (2014) Comparative population genomics in animals uncovers the determinants of genetic diversity. Nature 515: 261–263. doi: 10.1038/nature13685 25141177
-
(2014)
Nature
, vol.515
, pp. 261-263
-
-
Romiguier, J.1
Gayral, P.2
Ballenghien, M.3
Bernard, A.4
Cahais, V.5
-
14
-
-
0035678847
-
Is the population size of a species relevant to evolution?
-
Gillespie JH, (2001) Is the population size of a species relevant to evolution? Evolution 55: 2161–2169. 11794777
-
(2001)
Evolution
, vol.55
, pp. 2161-2169
-
-
Gillespie, J.H.1
-
15
-
-
0016220238
-
The hitch-hiking effect of a favourable gene
-
Smith JM, Haigh J, (1974) The hitch-hiking effect of a favourable gene. Genetical research 23: 23–35. 4407212
-
(1974)
Genetical research
, vol.23
, pp. 23-35
-
-
Smith, J.M.1
Haigh, J.2
-
17
-
-
0027305597
-
The effect of deleterious mutations on neutral molecular variation
-
Charlesworth B, Morgan MT, Charlesworth D, (1993) The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289–1303. 8375663
-
(1993)
Genetics
, vol.134
, pp. 1289-1303
-
-
Charlesworth, B.1
Morgan, M.T.2
Charlesworth, D.3
-
18
-
-
0028846610
-
Deleterious background selection with recombination
-
Hudson RR, Kaplan NL, (1995) Deleterious background selection with recombination. Genetics 141: 1605–1617. 8601498
-
(1995)
Genetics
, vol.141
, pp. 1605-1617
-
-
Hudson, R.R.1
Kaplan, N.L.2
-
19
-
-
84884612597
-
Coalescence and genetic diversity in sexual populations under selection
-
Neher RA, Kessinger TA, (2013) Coalescence and genetic diversity in sexual populations under selection. Proc Natl Acad Sci U S A. 110:15836-41. 24019480
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 15836-15841
-
-
Neher, R.A.1
Kessinger, T.A.2
-
20
-
-
67651050074
-
Pervasive Natural Selection in the Drosophila Genome?
-
Sella G, Petrov DA, Przeworski M, Andolfatto P, (2009) Pervasive Natural Selection in the Drosophila Genome? PLoS Genetics 5: e1000495. doi: 10.1371/journal.pgen.1000495 19503600
-
(2009)
PLoS Genetics
, vol.5
, pp. 1000495
-
-
Sella, G.1
Petrov, D.A.2
Przeworski, M.3
Andolfatto, P.4
-
21
-
-
0026529344
-
Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
-
Begun DJ, Aquadro CF, (1992) Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519–520. 1560824
-
(1992)
Nature
, vol.356
, pp. 519-520
-
-
Begun, D.J.1
Aquadro, C.F.2
-
22
-
-
59249100200
-
Pervasive Hitchhiking at Coding and Regulatory Sites in Humans
-
Cai JJ, Macpherson JM, Sella G, Petrov DA, (2009) Pervasive Hitchhiking at Coding and Regulatory Sites in Humans. PLoS Genetics 5: e1000336. doi: 10.1371/journal.pgen.1000336 19148272
-
(2009)
PLoS Genetics
, vol.5
, pp. 1000336
-
-
Cai, J.J.1
Macpherson, J.M.2
Sella, G.3
Petrov, D.A.4
-
23
-
-
37249036929
-
Genomewide Spatial Correspondence Between Nonsynonymous Divergence and Neutral Polymorphism Reveals Extensive Adaptation in Drosophila
-
Macpherson JM, Sella G, Davis JC, Petrov DA, (2007) Genomewide Spatial Correspondence Between Nonsynonymous Divergence and Neutral Polymorphism Reveals Extensive Adaptation in Drosophila. Genetics 177: 2083–2099. 18073425
-
(2007)
Genetics
, vol.177
, pp. 2083-2099
-
-
Macpherson, J.M.1
Sella, G.2
Davis, J.C.3
Petrov, D.A.4
-
24
-
-
0031770039
-
DNA Variability and Recombination Rates at X-Linked Loci in Humans
-
Nachman MW, Bauer VL, Crowell SL, Aquadro CF, (1998) DNA Variability and Recombination Rates at X-Linked Loci in Humans. Genetics 150: 1133–1141. 9799265
-
(1998)
Genetics
, vol.150
, pp. 1133-1141
-
-
Nachman, M.W.1
Bauer, V.L.2
Crowell, S.L.3
Aquadro, C.F.4
-
25
-
-
84870266437
-
Recombination Modulates How Selection Affects Linked Sites in Drosophila
-
McGaugh SE, Heil CSS, Manzano-Winkler B, Loewe L, Goldstein S, et al. (2012) Recombination Modulates How Selection Affects Linked Sites in Drosophila. PLoS Biol 10: e1001422. doi: 10.1371/journal.pbio.1001422 23152720
-
(2012)
PLoS Biol
, vol.10
, pp. 1001422
-
-
McGaugh, S.E.1
Heil, C.S.S.2
Manzano-Winkler, B.3
Loewe, L.4
Goldstein, S.5
-
26
-
-
84855455949
-
Natural Selection in Gene-Dense Regions Shapes the Genomic Pattern of Polymorphism in Wild and Domesticated Rice
-
Flowers JM, Molina J, Rubinstein S, Huang P, Schaal BA, et al. (2012) Natural Selection in Gene-Dense Regions Shapes the Genomic Pattern of Polymorphism in Wild and Domesticated Rice. Molecular Biology and Evolution 29: 675–687. doi: 10.1093/molbev/msr225 21917724
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 675-687
-
-
Flowers, J.M.1
Molina, J.2
Rubinstein, S.3
Huang, P.4
Schaal, B.A.5
-
27
-
-
84875230189
-
Genomic signatures of selection at linked sites: unifying the disparity among species
-
Cutter AD, Payseur BA, (2013) Genomic signatures of selection at linked sites: unifying the disparity among species. Nat Rev Genet 14: 262–274. 23478346
-
(2013)
Nat Rev Genet
, vol.14
, pp. 262-274
-
-
Cutter, A.D.1
Payseur, B.A.2
-
28
-
-
80055095261
-
Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome
-
Lohmueller KE, Albrechtsen A, Li Y, Kim SY, Korneliussen T, et al. (2011) Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome. PLoS Genetics 7: e1002326. doi: 10.1371/journal.pgen.1002326 22022285
-
(2011)
PLoS Genetics
, vol.7
, pp. 1002326
-
-
Lohmueller, K.E.1
Albrechtsen, A.2
Li, Y.3
Kim, S.Y.4
Korneliussen, T.5
-
29
-
-
44949129000
-
Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome
-
Boyko AR, Williamson SH, Indap AR, Degenhardt JD, Hernandez RD, et al. (2008) Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome. PLoS Genetics 4: e1000083. doi: 10.1371/journal.pgen.1000083 18516229
-
(2008)
PLoS Genetics
, vol.4
, pp. 1000083
-
-
Boyko, A.R.1
Williamson, S.H.2
Indap, A.R.3
Degenhardt, J.D.4
Hernandez, R.D.5
-
30
-
-
78649310938
-
Shifts in the intensity of purifying selection: An analysis of genome-wide polymorphism data from two closely related yeast species
-
Elyashiv E, Bullaughey K, Sattath S, Rinott Y, Przeworski M, et al. (2010) Shifts in the intensity of purifying selection: An analysis of genome-wide polymorphism data from two closely related yeast species. Genome Research 20: 1558–1573. doi: 10.1101/gr.108993.110 20817943
-
(2010)
Genome Research
, vol.20
, pp. 1558-1573
-
-
Elyashiv, E.1
Bullaughey, K.2
Sattath, S.3
Rinott, Y.4
Przeworski, M.5
-
31
-
-
77954969511
-
Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species
-
Gossmann TI, Song BH, Windsor AJ, Mitchell-Olds T, Dixon CJ, et al. (2010) Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species. Molecular Biology and Evolution 27: 1822–1832. doi: 10.1093/molbev/msq079 20299543
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 1822-1832
-
-
Gossmann, T.I.1
Song, B.H.2
Windsor, A.J.3
Mitchell-Olds, T.4
Dixon, C.J.5
-
32
-
-
35948940895
-
Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans
-
Begun DJ, Holloway AK, Stevens K, Hillier LW, Poh Y-P, et al. (2007) Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans. PLoS Biol 5: e310. 17988176
-
(2007)
PLoS Biol
, vol.5
, pp. 310
-
-
Begun, D.J.1
Holloway, A.K.2
Stevens, K.3
Hillier, L.W.4
Poh, Y.-P.5
-
33
-
-
38849194141
-
Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
-
Andolfatto P, (2007) Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome. Genome Research 17: 1755–1762. 17989248
-
(2007)
Genome Research
, vol.17
, pp. 1755-1762
-
-
Andolfatto, P.1
-
34
-
-
84892714881
-
Contributions of Protein-Coding and Regulatory Change to Adaptive Molecular Evolution in Murid Rodents
-
Halligan DL, Kousathanas A, Ness RW, Harr B, Eöry L, et al. (2013) Contributions of Protein-Coding and Regulatory Change to Adaptive Molecular Evolution in Murid Rodents. PLoS Genetics 9: e1003995. doi: 10.1371/journal.pgen.1003995 24339797
-
(2013)
PLoS Genetics
, vol.9
, pp. 1003995
-
-
Halligan, D.L.1
Kousathanas, A.2
Ness, R.W.3
Harr, B.4
Eöry, L.5
-
35
-
-
77954966377
-
Genome-Wide Evidence for Efficient Positive and Purifying Selection in Capsella grandiflora, a Plant Species with a Large Effective Population Size
-
Slotte T, Foxe JP, Hazzouri KM, Wright SI, (2010) Genome-Wide Evidence for Efficient Positive and Purifying Selection in Capsella grandiflora, a Plant Species with a Large Effective Population Size. Molecular Biology and Evolution 27: 1813–1821. doi: 10.1093/molbev/msq062 20194429
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 1813-1821
-
-
Slotte, T.1
Foxe, J.P.2
Hazzouri, K.M.3
Wright, S.I.4
-
36
-
-
84866081815
-
Genomic Variation in Natural Populations of Drosophila melanogaster
-
Langley CH, Stevens K, Cardeno C, Lee YCG, Schrider DR, et al. (2012) Genomic Variation in Natural Populations of Drosophila melanogaster. Genetics 192: 533–598. doi: 10.1534/genetics.112.142018 22673804
-
(2012)
Genetics
, vol.192
, pp. 533-598
-
-
Langley, C.H.1
Stevens, K.2
Cardeno, C.3
Lee, Y.C.G.4
Schrider, D.R.5
-
37
-
-
33646253454
-
Population Size Does Not Influence Mitochondrial Genetic Diversity in Animals
-
Bazin E, (2006) Population Size Does Not Influence Mitochondrial Genetic Diversity in Animals. Science 312: 570–572. 16645093
-
(2006)
Science
, vol.312
, pp. 570-572
-
-
Bazin, E.1
-
38
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
1000 Genomes Project Consortium, et al. (2012) An integrated map of genetic variation from 1,092 human genomes. Nature 491: 56–65. 23128226
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
-
39
-
-
0033927343
-
Joint Effects of Genetic Hitchhiking and Background Selection on Neutral Variation
-
Kim Y, Stephan W, (2000) Joint Effects of Genetic Hitchhiking and Background Selection on Neutral Variation. Genetics 155: 1415–1427. 10880499
-
(2000)
Genetics
, vol.155
, pp. 1415-1427
-
-
Kim, Y.1
Stephan, W.2
-
40
-
-
77957942349
-
Selection at linked sites shapes heritable phenotypic variation in C. elegans
-
Rockman MV, Skrovanek SS, Kruglyak L, (2010) Selection at linked sites shapes heritable phenotypic variation in C. elegans. Science. 330: 372-6. 20947766.
-
(2010)
Science
, vol.330
, pp. 372-376
-
-
Rockman, M.V.1
Skrovanek, S.S.2
Kruglyak, L.3
-
41
-
-
84866077853
-
Patterns of Neutral Diversity Under General Models of Selective Sweeps
-
Coop G, Ralph P, (2012) Patterns of Neutral Diversity Under General Models of Selective Sweeps. Genetics 192: 205–224. doi: 10.1534/genetics.112.141861 22714413
-
(2012)
Genetics
, vol.192
, pp. 205-224
-
-
Coop, G.1
Ralph, P.2
-
42
-
-
0034284603
-
Relation Between Population Density and Body Size in Stream Communities
-
Schmid PE, Tokeshi M, Schmid-Araya JM, (2000) Relation Between Population Density and Body Size in Stream Communities. Science 289: 1557–1560. 10968792
-
(2000)
Science
, vol.289
, pp. 1557-1560
-
-
Schmid, P.E.1
Tokeshi, M.2
Schmid-Araya, J.M.3
-
43
-
-
0019446386
-
Population density and body size in mammals
-
Damuth J, (1981) Population density and body size in mammals. Nature 290: 699–700. doi: 10.1038/290699a0
-
(1981)
Nature
, vol.290
, pp. 699-700
-
-
Damuth, J.1
-
44
-
-
0032505115
-
Allometric scaling of plant energetics and population density
-
Enquist BJ, Brown JH, West GB, (1998) Allometric scaling of plant energetics and population density. Nature 395: 163–165. doi: 10.1038/25977
-
(1998)
Nature
, vol.395
, pp. 163-165
-
-
Enquist, B.J.1
Brown, J.H.2
West, G.B.3
-
45
-
-
0036640951
-
Human SNP variability and mutation rate are higher in regions of high recombination
-
Lercher MJ, Hurst LD, (2002) Human SNP variability and mutation rate are higher in regions of high recombination. Trends in genetics 18: 337–340. 12127766
-
(2002)
Trends in genetics
, vol.18
, pp. 337-340
-
-
Lercher, M.J.1
Hurst, L.D.2
-
46
-
-
0038015586
-
A neutral explanation for the correlation of diversity with recombination rates in humans
-
Hellmann I, Ebersberger I, Ptak SE, Pääbo S, (2003) A neutral explanation for the correlation of diversity with recombination rates in humans. Am J Hum Genet 72: 1527–1535. 12740762
-
(2003)
Am J Hum Genet
, vol.72
, pp. 1527-1535
-
-
Hellmann, I.1
Ebersberger, I.2
Ptak, S.E.3
Pääbo, S.4
-
47
-
-
77955146078
-
Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae
-
Cutter AD, Choi JY, (2010) Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae. Genome Research 20: 1103–1111. doi: 10.1101/gr.104331.109 20508143
-
(2010)
Genome Research
, vol.20
, pp. 1103-1111
-
-
Cutter, A.D.1
Choi, J.Y.2
-
48
-
-
67149096366
-
Widespread Genomic Signatures of Natural Selection in Hominid Evolution
-
McVicker G, Gordon D, Davis C, Green P, (2009) Widespread Genomic Signatures of Natural Selection in Hominid Evolution. PLoS Genetics 5: e1000471. doi: 10.1371/journal.pgen.1000471 19424416
-
(2009)
PLoS Genetics
, vol.5
, pp. 1000471
-
-
McVicker, G.1
Gordon, D.2
Davis, C.3
Green, P.4
-
50
-
-
84903452150
-
Background Selection as Baseline for Nucleotide Variation across the Drosophila Genome
-
Comeron JM, (2014) Background Selection as Baseline for Nucleotide Variation across the Drosophila Genome. PLoS Genetics 10: e1004434. doi: 10.1371/journal.pgen.1004434 24968283
-
(2014)
PLoS Genetics
, vol.10
, pp. 1004434
-
-
Comeron, J.M.1
-
51
-
-
0014421064
-
Evolutionary rate at the molecular level
-
Kimura M, (1968) Evolutionary rate at the molecular level. Nature. 217.5129: 624–626. 5637732
-
(1968)
Nature
, vol.217
, Issue.5129
, pp. 624-626
-
-
Kimura, M.1
-
52
-
-
84929475863
-
-
Kimura M, (1984) The neutral theory of molecular evolution. Cambridge University Press.
-
(1984)
-
-
Kimura, M.1
-
53
-
-
0027020232
-
The nearly neutral theory of molecular evolution
-
Ohta T (1992) The nearly neutral theory of molecular evolution. Annual Review of Ecology and Systematics. 263–286
-
(1992)
Annual Review of Ecology and Systematics
, pp. 263-286
-
-
Ohta, T.1
-
54
-
-
72449123784
-
Species' range: adaptation in space and time
-
Polechová J, Barton N, Marion G, (2009) Species' range: adaptation in space and time. The American Naturalist 174: E186–E204. doi: 10.1086/605958 19788353
-
(2009)
The American Naturalist
, vol.174
, pp. 186-204
-
-
Polechová, J.1
Barton, N.2
Marion, G.3
-
55
-
-
78951480118
-
Parallel Adaptation: One or Many Waves of Advance of an Advantageous Allele?
-
Ralph P, Coop G, (2010) Parallel Adaptation: One or Many Waves of Advance of an Advantageous Allele? Genetics 186: 647–668. doi: 10.1534/genetics.110.119594 20660645
-
(2010)
Genetics
, vol.186
, pp. 647-668
-
-
Ralph, P.1
Coop, G.2
-
56
-
-
0023159436
-
Gene flow and the geographic structure of natural populations
-
Slatkin M, (1987) Gene flow and the geographic structure of natural populations. Science 236: 787–792. 3576198
-
(1987)
Science
, vol.236
, pp. 787-792
-
-
Slatkin, M.1
-
57
-
-
3042538066
-
Bias in species range estimates from minimum convex polygons: implications for conservation and options for improved planning
-
Burgman MA, Fox JC, (2003) Bias in species range estimates from minimum convex polygons: implications for conservation and options for improved planning. Animal Conservation 6: 19–28.
-
(2003)
Animal Conservation
, vol.6
, pp. 19-28
-
-
Burgman, M.A.1
Fox, J.C.2
-
58
-
-
84859264899
-
A review of designs for capture–mark–recapture studies in discrete time
-
Lindberg MS, (2012) A review of designs for capture–mark–recapture studies in discrete time. Journal of Ornithology 152: 355–370.
-
(2012)
Journal of Ornithology
, vol.152
, pp. 355-370
-
-
Lindberg, M.S.1
-
59
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754–1760. doi: 10.1093/bioinformatics/btp324 19451168
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
60
-
-
84876996918
-
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, et al. (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biology 14: R36. doi: 10.1186/gb-2013-14-4-r36 23618408
-
(2013)
Genome Biology
, vol.14
, pp. 36
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
-
61
-
-
79956307251
-
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter G, Goodson M, (2011) Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Research 21: 936–939. doi: 10.1101/gr.111120.110 20980556
-
(2011)
Genome Research
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
62
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43: 491–498. doi: 10.1038/ng.806 21478889
-
(2011)
Nat Genet
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
-
63
-
-
0024116811
-
“Silent” sites in Drosophila genes are not neutral: evidence of selection among synonymous codons
-
Shields DC, Sharp PM, Higgins DG, Wright F, (1988) “Silent” sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. Molecular Biology and Evolution 5: 704–716. 3146682
-
(1988)
Molecular Biology and Evolution
, vol.5
, pp. 704-716
-
-
Shields, D.C.1
Sharp, P.M.2
Higgins, D.G.3
Wright, F.4
-
64
-
-
84878486976
-
Strong Purifying Selection at Synonymous Sites in D. melanogaster
-
Lawrie DS, Messer PW, Hershberg R, Petrov DA, (2013) Strong Purifying Selection at Synonymous Sites in D. melanogaster. PLoS Genetics 9: e1003527. doi: 10.1371/journal.pgen.1003527 23737754
-
(2013)
PLoS Genetics
, vol.9
, pp. 1003527
-
-
Lawrie, D.S.1
Messer, P.W.2
Hershberg, R.3
Petrov, D.A.4
-
65
-
-
0021066244
-
Evolutionary relationship of DNA sequences in finite populations
-
Tajima F, (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437–460. 6628982
-
(1983)
Genetics
, vol.105
, pp. 437-460
-
-
Tajima, F.1
-
66
-
-
0030920610
-
Sequence Mapping by Electronic PCR
-
Schuler GD, (1997) Sequence Mapping by Electronic PCR. Genome Research 7: 541–550. 9149949
-
(1997)
Genome Research
, vol.7
, pp. 541-550
-
-
Schuler, G.D.1
-
67
-
-
34447564992
-
Mutation rate variation in multicellular eukaryotes: causes and consequences
-
Baer CF, Miyamoto MM, Denver DR, (2007) Mutation rate variation in multicellular eukaryotes: causes and consequences. Nat Rev Genet 8: 619–631. 17637734
-
(2007)
Nat Rev Genet
, vol.8
, pp. 619-631
-
-
Baer, C.F.1
Miyamoto, M.M.2
Denver, D.R.3
-
68
-
-
33846047594
-
Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila
-
Haag-Liautard C, Dorris M, Maside X, Macaskill S, Halligan DL, et al. (2007) Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. Nature 445: 82–85. 17203060
-
(2007)
Nature
, vol.445
, pp. 82-85
-
-
Haag-Liautard, C.1
Dorris, M.2
Maside, X.3
Macaskill, S.4
Halligan, D.L.5
|