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Volumn 25, Issue 9, 2015, Pages 1309-1324

Dynamics and function of distal regulatory elements during neurogenesis and neuroplasticity

Author keywords

[No Author keywords available]

Indexed keywords

N METHYL DEXTRO ASPARTIC ACID RECEPTOR; TRANSCRIPTION FACTOR; TRANSCRIPTOME; CHROMATIN; HISTONE;

EID: 84940973203     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.190926.115     Document Type: Article
Times cited : (40)

References (76)
  • 5
    • 0030908103 scopus 로고    scopus 로고
    • Modulation of levodopa-induced motor response complications by NMDA antagonists in Parkinson's disease
    • Blanchet PJ, Papa SM, Metman LV, Mouradian MM, Chase TN. 1997. Modulation of levodopa-induced motor response complications by NMDA antagonists in Parkinson's disease. Neurosci Biobehav Rev 21: 447-453.
    • (1997) Neurosci Biobehav Rev , vol.21 , pp. 447-453
    • Blanchet, P.J.1    Papa, S.M.2    Metman, L.V.3    Mouradian, M.M.4    Chase, T.N.5
  • 10
    • 84909982180 scopus 로고    scopus 로고
    • Regulation of neuronal gene expression and survival by basal NMDA receptor activity: A role for histone deacetylase 4
    • Chen Y, Wang Y, Modrusan Z, Sheng M, Kaminker JS. 2014. Regulation of neuronal gene expression and survival by basal NMDA receptor activity: A role for histone deacetylase 4. J Neurosci 34: 15327-15339.
    • (2014) J Neurosci , vol.34 , pp. 15327-15339
    • Chen, Y.1    Wang, Y.2    Modrusan, Z.3    Sheng, M.4    Kaminker, J.S.5
  • 11
    • 0024093449 scopus 로고
    • Glutamate neurotoxicity and diseases of the nervous system
    • Choi DW. 1988. Glutamate neurotoxicity and diseases of the nervous system. Neuron 1: 623-634.
    • (1988) Neuron , vol.1 , pp. 623-634
    • Choi, D.W.1
  • 12
    • 0026497926 scopus 로고
    • Excitotoxic cell death
    • Choi DW. 1992. Excitotoxic cell death. J Neurobiol 23: 1261-1276.
    • (1992) J Neurobiol , vol.23 , pp. 1261-1276
    • Choi, D.W.1
  • 13
    • 84978955316 scopus 로고    scopus 로고
    • A place at the table: LTD as a mediator of memory genesis
    • Connor SA, Wang YT. 2015. A place at the table: LTD as a mediator of memory genesis. Neuroscientist doi:10.1177/1073858415588498.
    • (2015) Neuroscientist
    • Connor, S.A.1    Wang, Y.T.2
  • 14
    • 2342582130 scopus 로고    scopus 로고
    • NMDA receptor function, neuroplasticity, and the pathophysiology of schizophrenia
    • Coyle JT, Tsai G. 2004. NMDA receptor function, neuroplasticity, and the pathophysiology of schizophrenia. Int Rev Neurobiol 59: 491-515.
    • (2004) Int Rev Neurobiol , vol.59 , pp. 491-515
    • Coyle, J.T.1    Tsai, G.2
  • 16
    • 0032510478 scopus 로고    scopus 로고
    • Translocation of calmodulin to the nucleus supports CREB phosphorylation in hippocampal neurons
    • Deisseroth K, Heist EK, Tsien RW. 1998. Translocation of calmodulin to the nucleus supports CREB phosphorylation in hippocampal neurons. Nature 392: 198-202.
    • (1998) Nature , vol.392 , pp. 198-202
    • Deisseroth, K.1    Heist, E.K.2    Tsien, R.W.3
  • 17
    • 84861839177 scopus 로고    scopus 로고
    • CTCF and cohesin help neurons raise their self-awareness
    • Dekker J. 2012. CTCF and cohesin help neurons raise their self-awareness. Proc Natl Acad Sci 109: 8799-8800.
    • (2012) Proc Natl Acad Sci , vol.109 , pp. 8799-8800
    • Dekker, J.1
  • 18
    • 84908333387 scopus 로고    scopus 로고
    • Chromatin loops as allosteric modulators of enhancer-promoter interactions
    • Doyle B, Fudenberg G, Imakaev M, Mirny LA. 2014. Chromatin loops as allosteric modulators of enhancer-promoter interactions. PLoS Comput Biol 10: E1003867.
    • (2014) PLoS Comput Biol , vol.10 , pp. e1003867
    • Doyle, B.1    Fudenberg, G.2    Imakaev, M.3    Mirny, L.A.4
  • 19
    • 34247469843 scopus 로고    scopus 로고
    • Epigenetic regulation of neural gene expression and neuronal function
    • Feng J, Fouse S, Fan G. 2007. Epigenetic regulation of neural gene expression and neuronal function. Pediatr Res 61(5 Pt 2): 58R-63R.
    • (2007) Pediatr Res , vol.61 , Issue.5 , pp. 58R-63R
    • Feng, J.1    Fouse, S.2    Fan, G.3
  • 20
    • 34250369627 scopus 로고    scopus 로고
    • FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
    • Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD. 2007. FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Genome Res 17: 877-885.
    • (2007) Genome Res , vol.17 , pp. 877-885
    • Giresi, P.G.1    Kim, J.2    McDaniell, R.M.3    Iyer, V.R.4    Lieb, J.D.5
  • 22
    • 0037301661 scopus 로고    scopus 로고
    • The Yin and Yang of NMDA receptor signalling
    • Hardingham GE, Bading H. 2003. The Yin and Yang of NMDA receptor signalling. Trends Neurosci 26: 81-89.
    • (2003) Trends Neurosci , vol.26 , pp. 81-89
    • Hardingham, G.E.1    Bading, H.2
  • 23
    • 84865724573 scopus 로고    scopus 로고
    • CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons
    • Hirayama T, Tarusawa E, Yoshimura Y, Galjart N, Yagi T. 2012. CTCF is required for neural development and stochastic expression of clustered Pcdh genes in neurons. Cell Rep 2: 345-357.
    • (2012) Cell Rep , vol.2 , pp. 345-357
    • Hirayama, T.1    Tarusawa, E.2    Yoshimura, Y.3    Galjart, N.4    Yagi, T.5
  • 25
    • 84862850415 scopus 로고    scopus 로고
    • Epigenetic control on cell fate choice in neural stem cells
    • Hu XL, Wang Y, Shen Q. 2012. Epigenetic control on cell fate choice in neural stem cells. Protein Cell 3: 278-290.
    • (2012) Protein Cell , vol.3 , pp. 278-290
    • Hu, X.L.1    Wang, Y.2    Shen, Q.3
  • 27
    • 13344261949 scopus 로고    scopus 로고
    • Motor neuron degeneration induced by excitotoxin agonists has features in common with those seen in the SOD-1 transgenic mouse model of amyotrophic lateral sclerosis
    • Ikonomidou C, Qin Qin Y, Labruyere J, Olney JW. 1996. Motor neuron degeneration induced by excitotoxin agonists has features in common with those seen in the SOD-1 transgenic mouse model of amyotrophic lateral sclerosis. J Neuropathol Exp Neurol 55: 211-224.
    • (1996) J Neuropathol Exp Neurol , vol.55 , pp. 211-224
    • Ikonomidou, C.1    Qin, Q.Y.2    Labruyere, J.3    Olney, J.W.4
  • 28
    • 46849097142 scopus 로고    scopus 로고
    • NMDA receptors in clinical neurology: Excitatory times ahead
    • Kalia LV, Kalia SK, Salter MW. 2008. NMDA receptors in clinical neurology: Excitatory times ahead. Lancet Neurol 7: 742-755.
    • (2008) Lancet Neurol , vol.7 , pp. 742-755
    • Kalia, L.V.1    Kalia, S.K.2    Salter, M.W.3
  • 29
    • 0035798238 scopus 로고    scopus 로고
    • The molecular biology of memory storage: A dialogue between genes and synapses
    • Kandel ER. 2001. The molecular biology of memory storage: A dialogue between genes and synapses. Science 294: 1030-1038.
    • (2001) Science , vol.294 , pp. 1030-1038
    • Kandel, E.R.1
  • 31
    • 0028865368 scopus 로고
    • Perception and memory: Illustration of an approach of the study of visual mechanisms in cognitive neuroscience
    • Koenig O. 1995. [Perception and memory: illustration of an approach of the study of visual mechanisms in cognitive neuroscience]. Rev Neurol 151: 451-456.
    • (1995) Rev Neurol , vol.151 , pp. 451-456
    • Koenig, O.1
  • 32
    • 84880838145 scopus 로고    scopus 로고
    • Chromatin accessibility data sets show bias due to sequence specificity of the DNase I enzyme
    • Koohy H, Down TA, Hubbard TJ. 2013. Chromatin accessibility data sets show bias due to sequence specificity of the DNase I enzyme. PLoS One 8: E69853.
    • (2013) PLoS One , vol.8 , pp. e69853
    • Koohy, H.1    Down, T.A.2    Hubbard, T.J.3
  • 33
    • 84863275669 scopus 로고    scopus 로고
    • Fusion protein Isl1-Lhx3 specifies motor neuron fate by inducing motor neuron genes and concomitantly suppressing the interneuron programs
    • Lee S, Cuvillier JM, Lee B, Shen R, Lee JW, Lee SK. 2012. Fusion protein Isl1-Lhx3 specifies motor neuron fate by inducing motor neuron genes and concomitantly suppressing the interneuron programs. Proc Natl Acad Sci 109: 3383-3388.
    • (2012) Proc Natl Acad Sci , vol.109 , pp. 3383-3388
    • Lee, S.1    Cuvillier, J.M.2    Lee, B.3    Shen, R.4    Lee, J.W.5    Lee, S.K.6
  • 34
    • 84879972630 scopus 로고    scopus 로고
    • STAT3 promotes motor neuron differentiation by collaborating with motor neuron-specific LIM complex
    • Lee S, Shen R, Cho HH, Kwon RJ, Seo SY, Lee JW, Lee SK. 2013. STAT3 promotes motor neuron differentiation by collaborating with motor neuron-specific LIM complex. Proc Natl Acad Sci 110: 11445-11450.
    • (2013) Proc Natl Acad Sci , vol.110 , pp. 11445-11450
    • Lee, S.1    Shen, R.2    Cho, H.H.3    Kwon, R.J.4    Seo, S.Y.5    Lee, J.W.6    Lee, S.K.7
  • 35
    • 79959853781 scopus 로고    scopus 로고
    • Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells
    • Lienert F, Mohn F, Tiwari VK, Baubec T, Roloff TC, Gaidatzis D, Stadler MB, Schübeler D. 2011. Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells. PLoS Genet 7: E1002090.
    • (2011) PLoS Genet , vol.7 , pp. e1002090
    • Lienert, F.1    Mohn, F.2    Tiwari, V.K.3    Baubec, T.4    Roloff, T.C.5    Gaidatzis, D.6    Stadler, M.B.7    Schübeler, D.8
  • 36
    • 0028762647 scopus 로고
    • Excitatory amino acids as a final common pathway for neurologic disorders
    • Lipton SA, Rosenberg PA. 1994. Excitatory amino acids as a final common pathway for neurologic disorders. N Engl J Med 330: 613-622.
    • (1994) N Engl J Med , vol.330 , pp. 613-622
    • Lipton, S.A.1    Rosenberg, P.A.2
  • 38
    • 84916237122 scopus 로고    scopus 로고
    • Can changes in histone acetylation contribute to memory formation?
    • Lopez-Atalaya JP, Barco A. 2014. Can changes in histone acetylation contribute to memory formation? Trends Genet 30: 529-539.
    • (2014) Trends Genet , vol.30 , pp. 529-539
    • Lopez-Atalaya, J.P.1    Barco, A.2
  • 39
    • 16844379257 scopus 로고    scopus 로고
    • Cadherin switching: Essential for behavioral but not morphological changes during an epitheliumto-mesenchyme transition
    • Maeda M, Johnson KR, Wheelock MJ. 2005. Cadherin switching: Essential for behavioral but not morphological changes during an epitheliumto-mesenchyme transition. J Cell Sci 118(Pt 5): 873-887.
    • (2005) J Cell Sci , vol.118 , pp. 873-887
    • Maeda, M.1    Johnson, K.R.2    Wheelock, M.J.3
  • 41
    • 84867609333 scopus 로고    scopus 로고
    • Molecular control of neurogenesis: A view from the mammalian cerebral cortex
    • Martynoga B, Drechsel D, Guillemot F. 2012. Molecular control of neurogenesis: A view from the mammalian cerebral cortex. Cold Spring Harb Perspect Biol 4: A008359.
    • (2012) Cold Spring Harb Perspect Biol , vol.4 , pp. a008359
    • Martynoga, B.1    Drechsel, D.2    Guillemot, F.3
  • 42
    • 33947611555 scopus 로고    scopus 로고
    • Long-term depression: Multiple forms and implications for brain function
    • Massey PV, Bashir ZI. 2007. Long-term depression: multiple forms and implications for brain function. Trends Neurosci 30: 176-184.
    • (2007) Trends Neurosci , vol.30 , pp. 176-184
    • Massey, P.V.1    Bashir, Z.I.2
  • 43
  • 44
    • 0032032006 scopus 로고    scopus 로고
    • Cognitive neuroscience and the study of memory
    • Milner B, Squire LR, Kandel ER. 1998. Cognitive neuroscience and the study of memory. Neuron 20: 445-468.
    • (1998) Neuron , vol.20 , pp. 445-468
    • Milner, B.1    Squire, L.R.2    Kandel, E.R.3
  • 45
    • 51649129596 scopus 로고    scopus 로고
    • Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors
    • Mohn F, Weber M, Rebhan M, Roloff TC, Richter J, Stadler MB, Bibel M, Schübeler D. 2008. Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors. Mol Cell 30: 755-766.
    • (2008) Mol Cell , vol.30 , pp. 755-766
    • Mohn, F.1    Weber, M.2    Rebhan, M.3    Roloff, T.C.4    Richter, J.5    Stadler, M.B.6    Bibel, M.7    Schübeler, D.8
  • 46
    • 0035865093 scopus 로고    scopus 로고
    • Learning about addiction from the genome
    • Nestler EJ, Landsman D. 2001. Learning about addiction from the genome. Nature 409: 834-835.
    • (2001) Nature , vol.409 , pp. 834-835
    • Nestler, E.J.1    Landsman, D.2
  • 48
    • 0037316810 scopus 로고    scopus 로고
    • Synaptic activity induces signalling to CREB without increasing global levels of cAMP in hippocampal neurons
    • Pokorska A, Vanhoutte P, Arnold FJ, Silvagno F, Hardingham GE, Bading H. 2003. Synaptic activity induces signalling to CREB without increasing global levels of cAMP in hippocampal neurons. J Neurochem 84: 447-452.
    • (2003) J Neurochem , vol.84 , pp. 447-452
    • Pokorska, A.1    Vanhoutte, P.2    Arnold, F.J.3    Silvagno, F.4    Hardingham, G.E.5    Bading, H.6
  • 49
    • 84925283769 scopus 로고    scopus 로고
    • What are super-enhancers?
    • Pott S, Lieb JD. 2014. What are super-enhancers? Nat Genet 47: 8-12.
    • (2014) Nat Genet , vol.47 , pp. 8-12
    • Pott, S.1    Lieb, J.D.2
  • 51
    • 0026671333 scopus 로고
    • The NMDA receptor, NMDA antagonists and epilepsy therapy
    • Rogawski MA. 1992. The NMDA receptor, NMDA antagonists and epilepsy therapy. A status report. Drugs 44: 279-292.
    • (1992) A Status Report. Drugs , vol.44 , pp. 279-292
    • Rogawski, M.A.1
  • 52
    • 84897466420 scopus 로고    scopus 로고
    • Quantitative modeling of a gene's expression from its intergenic sequence
    • Samee MA, Sinha S. 2014. Quantitative modeling of a gene's expression from its intergenic sequence. PLoS Comput Biol 10: E1003467.
    • (2014) PLoS Comput Biol , vol.10 , pp. e1003467
    • Samee, M.A.1    Sinha, S.2
  • 53
    • 25144473954 scopus 로고    scopus 로고
    • Modulation ofNMDA receptors in the cerebellum. II. Signaling pathways and physiological modulators regulatingNMDAreceptor function
    • Sanchez-Perez A, Llansola M, Cauli O, Felipo V. 2005. Modulation ofNMDA receptors in the cerebellum. II. Signaling pathways and physiological modulators regulatingNMDAreceptor function. Cerebellum 4: 162-170.
    • (2005) Cerebellum , vol.4 , pp. 162-170
    • Sanchez-Perez, A.1    Llansola, M.2    Cauli, O.3    Felipo, V.4
  • 54
    • 82955189290 scopus 로고    scopus 로고
    • Glutamatergic mechanisms in the dyskinesias induced by pharmacological dopamine replacement and deep brain stimulation for the treatment of Parkinson's disease
    • Sgambato-Faure V, Cenci MA. 2012. Glutamatergic mechanisms in the dyskinesias induced by pharmacological dopamine replacement and deep brain stimulation for the treatment of Parkinson's disease. Prog Neurobiol 96: 69-86.
    • (2012) Prog Neurobiol , vol.96 , pp. 69-86
    • Sgambato-Faure, V.1    Cenci, M.A.2
  • 56
    • 0032852479 scopus 로고    scopus 로고
    • CREB: A stimulus-induced transcription factor activated by a diverse array of extracellular signals
    • Shaywitz AJ, Greenberg ME. 1999. CREB: A stimulus-induced transcription factor activated by a diverse array of extracellular signals. Annu Rev Biochem 68: 821-861.
    • (1999) Annu Rev Biochem , vol.68 , pp. 821-861
    • Shaywitz, A.J.1    Greenberg, M.E.2
  • 57
    • 84861733509 scopus 로고    scopus 로고
    • Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA
    • Simon JM, Giresi PG, Davis IJ, Lieb JD. 2012. Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA. Nat Protoc 7: 256-267.
    • (2012) Nat Protoc , vol.7 , pp. 256-267
    • Simon, J.M.1    Giresi, P.G.2    Davis, I.J.3    Lieb, J.D.4
  • 61
    • 78650317283 scopus 로고    scopus 로고
    • Islet1 selectively promotes peripheral axon outgrowth in Rohon-Beard primary sensory neurons
    • Tanaka H, Nojima Y, Shoji W, Sato M, Nakayama R, Ohshima T, Okamoto H. 2011. Islet1 selectively promotes peripheral axon outgrowth in Rohon-Beard primary sensory neurons. Dev Dyn 240: 9-22.
    • (2011) Dev Dyn , vol.240 , pp. 9-22
    • Tanaka, H.1    Nojima, Y.2    Shoji, W.3    Sato, M.4    Nakayama, R.5    Ohshima, T.6    Okamoto, H.7
  • 62
    • 0037204070 scopus 로고    scopus 로고
    • A calcium-responsive transcription factor, CaRF, that regulates neuronal activity-dependent expression of BDNF
    • Tao X, West AE, Chen WG, Corfas G, Greenberg ME. 2002. A calcium-responsive transcription factor, CaRF, that regulates neuronal activity-dependent expression of BDNF. Neuron 33: 383-395.
    • (2002) Neuron , vol.33 , pp. 383-395
    • Tao, X.1    West, A.E.2    Chen, W.G.3    Corfas, G.4    Greenberg, M.E.5
  • 67
    • 0028029855 scopus 로고
    • Selective increase of NMDA-sensitive glutamate binding in the striatum of Parkinson's disease, Alzheimer's disease, and mixed Parkinson's disease/Alzheimer's disease patients: An autoradiographic study
    • Ulas J, Weihmuller FB, Brunner LC, Joyce JN, Marshall JF, Cotman CW. 1994. Selective increase of NMDA-sensitive glutamate binding in the striatum of Parkinson's disease, Alzheimer's disease, and mixed Parkinson's disease/Alzheimer's disease patients: An autoradiographic study. J Neurosci 14(11 Pt 1): 6317-6324.
    • (1994) J Neurosci , vol.14 , Issue.11 , pp. 6317-6324
    • Ulas, J.1    Weihmuller, F.B.2    Brunner, L.C.3    Joyce, J.N.4    Marshall, J.F.5    Cotman, C.W.6
  • 68
    • 0028909220 scopus 로고
    • Embryonic expression of the chicken Sox2, Sox3 and Sox11 genes suggests an interactive role in neuronal development
    • Uwanogho D, Rex M, Cartwright EJ, Pearl G, Healy C, Scotting PJ, Sharpe PT. 1995. Embryonic expression of the chicken Sox2, Sox3 and Sox11 genes suggests an interactive role in neuronal development. Mech Dev 49: 23-36.
    • (1995) Mech Dev , vol.49 , pp. 23-36
    • Uwanogho, D.1    Rex, M.2    Cartwright, E.J.3    Pearl, G.4    Healy, C.5    Scotting, P.J.6    Sharpe, P.T.7
  • 70
    • 0036884163 scopus 로고    scopus 로고
    • Regulation of transcription factors by neuronal activity
    • West AE, Griffith EC, Greenberg ME. 2002. Regulation of transcription factors by neuronal activity. Nat Rev Neurosci 3: 921-931.
    • (2002) Nat Rev Neurosci , vol.3 , pp. 921-931
    • West, A.E.1    Griffith, E.C.2    Greenberg, M.E.3
  • 72
    • 0033526651 scopus 로고    scopus 로고
    • Neuropathic pain: Aetiology, symptoms, mechanisms, and management
    • Woolf CJ, Mannion RJ. 1999. Neuropathic pain: Aetiology, symptoms, mechanisms, and management. Lancet 353: 1959-1964.
    • (1999) Lancet , vol.353 , pp. 1959-1964
    • Woolf, C.J.1    Mannion, R.J.2
  • 73
    • 84902477907 scopus 로고    scopus 로고
    • Unlocking epigenetic codes in neurogenesis
    • Yao B, Jin P. 2014. Unlocking epigenetic codes in neurogenesis. Genes Dev 28: 1253-1271.
    • (2014) Genes Dev , vol.28 , pp. 1253-1271
    • Yao, B.1    Jin, P.2
  • 75
    • 33846847943 scopus 로고    scopus 로고
    • Decoding NMDA receptor signaling: Identification of genomic programs specifying neuronal survival and death
    • Zhang SJ, Steijaert MN, Lau D, Schütz G, Delucinge-Vivier C, Descombes P, Bading H. 2007. Decoding NMDA receptor signaling: identification of genomic programs specifying neuronal survival and death. Neuron 53: 549-562.
    • (2007) Neuron , vol.53 , pp. 549-562
    • Zhang, S.J.1    Steijaert, M.N.2    Lau, D.3    Schütz, G.4    Delucinge-Vivier, C.5    Descombes, P.6    Bading, H.7


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