-
1
-
-
0034923502
-
DNA topoisomerases: Structure, function, and mechanism
-
DOI 10.1146/annurev.biochem.70.1.369
-
Champoux, J. J. DNA topoisomerases: structure, function, and mechanism. Annu. Rev. Biochem. 70, 369-413 (2001). (Pubitemid 32662215)
-
(2001)
Annual Review of Biochemistry
, vol.70
, pp. 369-413
-
-
Champoux, J.J.1
-
2
-
-
34247496263
-
Origin and evolution of DNA topoisomerases
-
DOI 10.1016/j.biochi.2006.12.009, PII S0300908407000041, DNA Topology DNA, more than just a ladder: A tribute to Michel Duguet
-
Forterre, P. Origin and evolution of DNA topoisomerases. Biochimie 88, 427-446 (2007). (Pubitemid 46656307)
-
(2007)
Biochimie
, vol.89
, Issue.4
, pp. 427-446
-
-
Forterre, P.1
Gribaldo, S.2
Gadelle, D.3
Serre, M.-C.4
-
3
-
-
0036085460
-
Cellular roles of DNA topoisomerases: A molecular perspective
-
DOI 10.1038/nrm831
-
Wang, J. C. Cellular roles of DNA topoisomerases: a molecular perspective. Nature reviews. Mol. Cell Biol. 3, 430-440 (2002). (Pubitemid 34685700)
-
(2002)
Nature Reviews Molecular Cell Biology
, vol.3
, Issue.6
, pp. 430-440
-
-
Wang, J.C.1
-
4
-
-
2442599792
-
Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases
-
DOI 10.1146/annurev.biophys.33.110502.140357
-
Corbett, K. D. & Berger, J. M. Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases. Annu. Rev. Biophys. Biomol. Struct. 33, 95-118 (2004). (Pubitemid 38829953)
-
(2004)
Annual Review of Biophysics and Biomolecular Structure
, vol.33
, pp. 95-118
-
-
Corbett, K.D.1
Berger, J.M.2
-
5
-
-
64649105115
-
DNA topoisomerase II and its growing repertoire of biological functions
-
Nitiss, J. L. DNA topoisomerase II and its growing repertoire of biological functions. Nat. Rev. Cancer 9, 327-337 (2009).
-
(2009)
Nat. Rev. Cancer
, vol.9
, pp. 327-337
-
-
Nitiss, J.L.1
-
6
-
-
63349108302
-
Topoisomerase II: A fitted mechanism for the chromatin landscape
-
Roca, J. Topoisomerase II: a fitted mechanism for the chromatin landscape. Nucleic Acids Res. 37, 721-730 (2009).
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 721-730
-
-
Roca, J.1
-
7
-
-
0026441120
-
Isolation of cDNA clones encoding the beta isozyme of human DNA topoisomerase II and localisation of the gene to chromosome 3p24
-
Jenkins, J. R. et al. Isolation of cDNA clones encoding the beta isozyme of human DNA topoisomerase II and localisation of the gene to chromosome 3p24. Nucleic Acids Res. 20, 5587-5592 (1992).
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 5587-5592
-
-
Jenkins, J.R.1
-
8
-
-
9444229370
-
Construction, characterization, and complementation of a conditional-lethal DNA topoisomerase IIα mutant human cell line
-
DOI 10.1091/mbc.E04-08-0732
-
Carpenter, A. J. & Porter, A. C. Construction, characterization, and complementation of a conditional-lethal DNA topoisomerase IIalpha mutant human cell line. Mol. Biol. Cell 15, 5700-5711 (2004). (Pubitemid 39564760)
-
(2004)
Molecular Biology of the Cell
, vol.15
, Issue.12
, pp. 5700-5711
-
-
Carpenter, A.J.1
Porter, A.C.G.2
-
9
-
-
0027516123
-
Novel HeLa topoisomerase II is the IIβ isoform: Complete coding sequence and homology with other type II topoisomerases
-
DOI 10.1016/0167-4781(93)90215-Y
-
Austin, C. A., Sng, J. H., Patel, S. & Fisher, L. M. Novel HeLa topoisomerase II is the II beta isoform: complete coding sequence and homology with other type II topoisomerases. Biochim. Biophys. Acta. 1172, 283-291 (1993). (Pubitemid 23079954)
-
(1993)
Biochimica et Biophysica Acta - Gene Structure and Expression
, vol.1172
, Issue.3
, pp. 283-291
-
-
Austin, C.A.1
Sng, J.-H.2
Patel, S.3
Fisher, L.M.4
-
10
-
-
0032509551
-
Essential mitotic functions of DNA topoisomerase IIalpha are not adopted by topoisomerase IIbeta in human H69 cells
-
Grue, P. et al. Essential mitotic functions of DNA topoisomerase IIalpha are not adopted by topoisomerase IIbeta in human H69 cells. J. Biol. Chem. 273, 33660-33666 (1998).
-
(1998)
J. Biol. Chem
, vol.273
, pp. 33660-33666
-
-
Grue, P.1
-
11
-
-
0034614266
-
DNA topoisomerase IIβ and neural development
-
DOI 10.1126/science.287.5450.131
-
Yang, X., Li, W., Prescott, E. D., Burden, S. J. & Wang, J. C. DNA topoisomerase IIbeta and neural development. Science 287, 131-134 (2000). (Pubitemid 30033236)
-
(2000)
Science
, vol.287
, Issue.5450
, pp. 131-134
-
-
Yang, X.1
-
12
-
-
12444269092
-
Enforced cytokinesis without complete nuclear division in embryonic cells depleting the activity of DNA topoisomerase IIα
-
DOI 10.1046/j.1365-2443.2003.00643.x
-
Akimitsu, N. et al. Enforced cytokinesis without complete nuclear division in embryonic cells depleting the activity of DNA topoisomerase IIalpha. Genes Cells 8, 393-402 (2003). (Pubitemid 36504014)
-
(2003)
Genes to Cells
, vol.8
, Issue.4
, pp. 393-402
-
-
Akimitsu, N.1
Adachi, N.2
Hirai, H.3
Hossain, M.S.4
Hamamoto, H.5
Kobayashi, M.6
Aratani, Y.7
Koyama, H.8
Sekimizu, K.9
-
13
-
-
0026793298
-
Different patterns of gene expression of topoisomerase II isoforms in differentiated tissues during murine development
-
Capranico, G., Tinelli, S., Austin, C. A., Fisher, M. L. & Zunino, F. Different patterns of gene expression of topoisomerase II isoforms in differentiated tissues during murine development. Biochim. Biophys. Acta. 1132, 43-48 (1992).
-
(1992)
Biochim. Biophys. Acta
, vol.1132
, pp. 43-48
-
-
Capranico, G.1
Tinelli, S.2
Austin, C.A.3
Fisher, M.L.4
Zunino, F.5
-
14
-
-
0027160745
-
Molecular cloning of partial cDNAs for rat DNA topoisomerase II isoforms and their differential expression in brain development
-
Tsutsui, K. et al. Molecular cloning of partial cDNAs for rat DNA topoisomerase II isoforms and their differential expression in brain development. J. Biol. Chem. 268, 19076-19083 (1993). (Pubitemid 23273863)
-
(1993)
Journal of Biological Chemistry
, vol.268
, Issue.25
, pp. 19076-19083
-
-
Tsutsui, K.1
Tsutsui, K.2
Okada, S.3
Watanabe, M.4
Shohmori, T.5
Seki, S.6
Inoue, Y.7
-
15
-
-
0028329019
-
Differential expressions of the topoisomerase IIα and IIβ mRNAs in developing rat brain
-
DOI 10.1016/0168-0102(94)90007-8
-
Watanabe, M., Tsutsui, K., Tsutsui, K. & Inoue, Y. Differential expressions of the topoisomerase II alpha and II beta mRNAs in developing rat brain. Neurosci. Res. 19, 51-57 (1994). (Pubitemid 24087203)
-
(1994)
Neuroscience Research
, vol.19
, Issue.1
, pp. 51-57
-
-
Watanabe, M.1
Tsutsui, K.2
Tsutsui, K.3
Inoue, Y.4
-
16
-
-
84859987415
-
Target genes of Topoisomerase IIbeta regulate neuronal survival and are defined by their chromatin state
-
Tiwari, V. K. et al. Target genes of Topoisomerase IIbeta regulate neuronal survival and are defined by their chromatin state. Proc. Natl Acad. Sci. USA 109, E934-E943 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
-
-
Tiwari, V.K.1
-
17
-
-
0000266944
-
Differential expression of DNA topoisomerases I and II during the eukaryotic cell cycle
-
Heck, M. M., Hittelman, W. N. & Earnshaw, W. C. Differential expression of DNA topoisomerases I and II during the eukaryotic cell cycle. Proc. Natl Acad. Sci. USA 85, 1086-1090 (1988). (Pubitemid 18073961)
-
(1988)
Proceedings of the National Academy of Sciences of the United States of America
, vol.85
, Issue.4
, pp. 1086-1090
-
-
Heck, M.M.S.1
Hittelman, W.N.2
Earnshaw, W.C.3
-
18
-
-
0023927993
-
Proliferation-dependent regulation of DNA topoisomerase II in cultured human cells
-
Hsiang, Y. H., Wu, H. Y. & Liu, L. F. Proliferation-dependent regulation of DNA topoisomerase II in cultured human cells. Cancer Res. 48, 3230-3235 (1988).
-
(1988)
Cancer Res
, vol.48
, pp. 3230-3235
-
-
Hsiang, Y.H.1
Wu, H.Y.2
Liu, L.F.3
-
19
-
-
44649117905
-
Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
-
DOI 10.1016/j.cell.2008.04.043, PII S009286740800617X
-
Chen, X. et al. Integration of external signalling pathways with the core transcriptional network in embryonic stem cells. Cell 133, 1106-1117 (2008). (Pubitemid 351787745)
-
(2008)
Cell
, vol.133
, Issue.6
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
Vega, V.B.6
Wong, E.7
Orlov, Y.L.8
Zhang, W.9
Jiang, J.10
Loh, Y.-H.11
Yeo, H.C.12
Yeo, Z.X.13
Narang, V.14
Govindarajan, K.R.15
Leong, B.16
Shahab, A.17
Ruan, Y.18
Bourque, G.19
Sung, W.-K.20
Clarke, N.D.21
Wei, C.-L.22
Ng, H.-H.23
more..
-
20
-
-
70450160004
-
Systems-level dynamic analyses of fate change in murine embryonic stem cells
-
Lu, R. et al. Systems-level dynamic analyses of fate change in murine embryonic stem cells. Nature 462, 358-362 (2009).
-
(2009)
Nature
, vol.462
, pp. 358-362
-
-
Lu, R.1
-
21
-
-
48449084118
-
Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells
-
Marson, A. et al. Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 134, 521-533 (2008).
-
(2008)
Cell
, vol.134
, pp. 521-533
-
-
Marson, A.1
-
22
-
-
33751092246
-
A protein interaction network for pluripotency of embryonic stem cells
-
DOI 10.1038/nature05284, PII NATURE05284
-
Wang, J. et al. A protein interaction network for pluripotency of embryonic stem cells. Nature 444, 364-368 (2006). (Pubitemid 44764111)
-
(2006)
Nature
, vol.444
, Issue.7117
, pp. 364-368
-
-
Wang, J.1
Rao, S.2
Chu, J.3
Shen, X.4
Levasseur, D.N.5
Theunissen, T.W.6
Orkin, S.H.7
-
23
-
-
79958263080
-
Pluripotency factors in embryonic stem cells regulate differentiation into germ layers
-
Thomson, M. et al. Pluripotency factors in embryonic stem cells regulate differentiation into germ layers. Cell 145, 875-889 (2011).
-
(2011)
Cell
, vol.145
, pp. 875-889
-
-
Thomson, M.1
-
24
-
-
0034028901
-
Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells
-
DOI 10.1038/74199
-
Niwa, H., Miyazaki, J. & Smith, A. G. Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat. Genet. 24, 372-376 (2000). (Pubitemid 30187435)
-
(2000)
Nature Genetics
, vol.24
, Issue.4
, pp. 372-376
-
-
Niwa, H.1
Miyazaki, J.-I.2
Smith, A.G.3
-
25
-
-
34250192881
-
Generation of a defined and uniform population of CNS progenitors and neurons from mouse embryonic stem cells
-
DOI 10.1038/nprot.2007.147, PII NPROT.2007.147
-
Bibel, M., Richter, J., Lacroix, E. & Barde, Y. A. Generation of a defined and uniform population of CNS progenitors and neurons from mouse embryonic stem cells. Nat. Protoc. 2, 1034-1043 (2007). (Pubitemid 46901284)
-
(2007)
Nature Protocols
, vol.2
, Issue.5
, pp. 1034-1043
-
-
Bibel, M.1
Richter, J.2
Lacroix, E.3
Barde, Y.-A.4
-
26
-
-
4344601961
-
Differentiation of mouse embryonic stem cells into a defined neuronal lineage
-
DOI 10.1038/nn1301
-
Bibel, M. et al. Differentiation of mouse embryonic stem cells into a defined neuronal lineage. Nat. Neurosci. 7, 1003-1009 (2004). (Pubitemid 39129511)
-
(2004)
Nature Neuroscience
, vol.7
, Issue.9
, pp. 1003-1009
-
-
Bibel, M.1
Richter, J.2
Schrenk, K.3
Tucker, K.L.4
Staiger, V.5
Korte, M.6
Goetz, M.7
Barde, Y.-A.8
-
27
-
-
9444264775
-
Developmental potential of defined neural progenitors derived from mouse embryonic stem cells
-
DOI 10.1242/dev.01420
-
Plachta, N., Bibel, M., Tucker, K. L. & Barde, Y. A. Developmental potential of defined neural progenitors derived from mouse embryonic stem cells. Development 131, 5449-5456 (2004). (Pubitemid 39562187)
-
(2004)
Development
, vol.131
, Issue.21
, pp. 5449-5456
-
-
Plachta, N.1
Bibel, M.2
Tucker, K.L.3
Barde, Y.-A.4
-
28
-
-
84863946985
-
Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal
-
Fietz, S. A. et al. Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal. Proc. Natl Acad. Sci. USA 109, 11836-11841 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 11836-11841
-
-
Fietz, S.A.1
-
29
-
-
74549116659
-
KAP1 controls endogenous retroviruses in embryonic stem cells
-
Rowe, H. M. et al. KAP1 controls endogenous retroviruses in embryonic stem cells. Nature 463, 237-240 (2010).
-
(2010)
Nature
, vol.463
, pp. 237-240
-
-
Rowe, H.M.1
-
30
-
-
84869089058
-
Genome-wide nucleosome positioning during embryonic stem cell development
-
Teif, V. B. et al. Genome-wide nucleosome positioning during embryonic stem cell development. Nat. Struct. Mol. Biol. 19, 1185-1192 (2012).
-
(2012)
Nat. Struct. Mol. Biol
, vol.19
, pp. 1185-1192
-
-
Teif, V.B.1
-
31
-
-
33645462044
-
Cytokine signalling in embryonic stem cells
-
DOI 10.1111/j.1600-0463.2005.apm-391.x
-
Kristensen, D. M., Kalisz, M. & Nielsen, J. H. Cytokine signalling in embryonic stem cells. APMIS 113, 756-772 (2005). (Pubitemid 43934219)
-
(2005)
APMIS
, vol.113
, Issue.11-12
, pp. 756-772
-
-
Kristensen, D.M.1
Kalisz, M.2
Nielsen, J.H.3
-
32
-
-
0026425654
-
Inhibition of intracellular topoisomerase II by antitumor bis(2,6-dioxopiperazine) derivatives: Mode of cell growth inhibition distinct from that of cleavable complex-forming type inhibitors
-
Ishida, R. et al. Inhibition of intracellular topoisomerase II by antitumor bis(2,6-dioxopiperazine) derivatives: mode of cell growth inhibition distinct from that of cleavable complex-forming type inhibitors. Cancer Res. 51, 4909-4916 (1991).
-
(1991)
Cancer Res
, vol.51
, pp. 4909-4916
-
-
Ishida, R.1
-
33
-
-
84861733509
-
Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA
-
Simon, J. M., Giresi, P. G., Davis, I. J. & Lieb, J. D. Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA. Nat. Protoc. 7, 256-267 (2012).
-
(2012)
Nat. Protoc
, vol.7
, pp. 256-267
-
-
Simon, J.M.1
Giresi, P.G.2
Davis, I.J.3
Lieb, J.D.4
-
34
-
-
80053539409
-
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
-
Song, L. et al. Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Genome Res. 21, 1757-1767 (2011).
-
(2011)
Genome Res
, vol.21
, pp. 1757-1767
-
-
Song, L.1
-
35
-
-
0038100185
-
Role of ERas in promoting tumour-like properties in mouse embryonic stem cells
-
DOI 10.1038/nature01646
-
Takahashi, K., Mitsui, K. & Yamanaka, S. Role of ERas in promoting tumourlike properties in mouse embryonic stem cells. Nature 423, 541-545 (2003). (Pubitemid 36648578)
-
(2003)
Nature
, vol.423
, Issue.6939
, pp. 541-545
-
-
Takahashi, K.1
Mitsui, K.2
Yamanaka, S.3
-
36
-
-
59649105074
-
Pleiotropic function of FGF-4: Its role in development and stem cells
-
Kosaka, N., Sakamoto, H., Terada, M. & Ochiya, T. Pleiotropic function of FGF-4: its role in development and stem cells. Dev. Dynamics 238, 265-276 (2009).
-
(2009)
Dev. Dynamics
, vol.238
, pp. 265-276
-
-
Kosaka, N.1
Sakamoto, H.2
Terada, M.3
Ochiya, T.4
-
37
-
-
0036841466
-
Misguided axonal projections, neural cell adhesion molecule 180 mRNA upregulation, and altered behavior in mice deficient for the close homolog of L1
-
DOI 10.1128/MCB.22.22.7967-7981.2002
-
Montag-Sallaz, M., Schachner, M. & Montag, D. Misguided axonal projections, neural cell adhesion molecule 180 mRNA upregulation, and altered behavior in mice deficient for the close homolog of L1. Mol. Cell Biol. 22, 7967-7981 (2002). (Pubitemid 35217305)
-
(2002)
Molecular and Cellular Biology
, vol.22
, Issue.22
, pp. 7967-7981
-
-
Montag-Sallaz, M.1
Schachner, M.2
Montag, D.3
-
38
-
-
0036154584
-
Depletion of Mab21l1 and Mab21l2 messages in mouse embryo arrests axial turning, and impairs notochord and neural tube differentiation
-
DOI 10.1002/tera.10018
-
Wong, R. L. & Chow, K. L. Depletion of Mab21l1 and Mab21l2 messages in mouse embryo arrests axial turning, and impairs notochord and neural tube differentiation. Teratology 65, 70-77 (2002). (Pubitemid 34113205)
-
(2002)
Teratology
, vol.65
, Issue.2
, pp. 70-77
-
-
Wong, R.L.Y.1
Chow, K.L.2
-
39
-
-
80051964025
-
Learning biomarkers of pluripotent stem cells in mouse
-
Scheubert, L., Schmidt, R., Repsilber, D., Lustrek, M. & Fuellen, G. Learning biomarkers of pluripotent stem cells in mouse. DNA Res. 18, 233-251 (2011).
-
(2011)
DNA Res
, vol.18
, pp. 233-251
-
-
Scheubert, L.1
Schmidt, R.2
Repsilber, D.3
Lustrek, M.4
Fuellen, G.5
-
40
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B. E. et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125, 315-326 (2006).
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
-
41
-
-
23844519339
-
A high-resolution map of active promoters in the human genome
-
DOI 10.1038/nature03877
-
Kim, T. H. et al. A high-resolution map of active promoters in the human genome. Nature 436, 876-880 (2005). (Pubitemid 41160649)
-
(2005)
Nature
, vol.436
, Issue.7052
, pp. 876-880
-
-
Kim, T.H.1
Barrera, L.O.2
Zheng, M.3
Qu, C.4
Singer, M.A.5
Richmond, T.A.6
Wu, Y.7
Green, R.D.8
Ren, B.9
-
42
-
-
24144475284
-
Reversing histone methylation
-
DOI 10.1038/nature04048
-
Bannister, A. J. & Kouzarides, T. Reversing histone methylation. Nature 436, 1103-1106 (2005). (Pubitemid 41232281)
-
(2005)
Nature
, vol.436
, Issue.7054
, pp. 1103-1106
-
-
Bannister, A.J.1
Kouzarides, T.2
-
43
-
-
33745839365
-
A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling
-
DOI 10.1038/nature04815, PII NATURE04815
-
Wysocka, J. et al. A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling. Nature 442, 86-90 (2006). (Pubitemid 44064214)
-
(2006)
Nature
, vol.442
, Issue.7098
, pp. 86-90
-
-
Wysocka, J.1
Swigut, T.2
Xiao, H.3
Milne, T.A.4
Kwon, S.Y.5
Landry, J.6
Kauer, M.7
Tackett, A.J.8
Chait, B.T.9
Badenhorst, P.10
Wu, C.11
Allis, C.D.12
-
44
-
-
33751116960
-
Histone H3 Lys 4 methylation: Caught in a bind?
-
DOI 10.1101/gad.1468206
-
Sims, 3rd R. J. & Reinberg, D. Histone H3 Lys 4 methylation: caught in a bind? Genes Dev. 20, 2779-2786 (2006). (Pubitemid 44771740)
-
(2006)
Genes and Development
, vol.20
, Issue.20
, pp. 2779-2786
-
-
Sims III, R.J.1
Reinberg, D.2
-
45
-
-
33846019277
-
Methylation of Lysine 4 on Histone H3: Intricacy of Writing and Reading a Single Epigenetic Mark
-
DOI 10.1016/j.molcel.2006.12.014, PII S1097276506008720
-
Ruthenburg, A. J., Allis, C. D. & Wysocka, J. Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Mol. Cell 25, 15-30 (2007). (Pubitemid 46049068)
-
(2007)
Molecular Cell
, vol.25
, Issue.1
, pp. 15-30
-
-
Ruthenburg, A.J.1
Allis, C.D.2
Wysocka, J.3
-
46
-
-
39649111114
-
Intracellular signalling pathways regulating pluripotency of embryonic stem cells
-
Okita, K. & Yamanaka, S. Intracellular signalling pathways regulating pluripotency of embryonic stem cells. Curr. Stem. Cell Res. Ther. 1, 103-111 (2006).
-
(2006)
Curr. Stem. Cell Res. Ther
, vol.1
, pp. 103-111
-
-
Okita, K.1
Yamanaka, S.2
-
47
-
-
69649084228
-
The transcriptional foundation of pluripotency
-
Chambers, I. & Tomlinson, S. R. The transcriptional foundation of pluripotency. Development 136, 2311-2322 (2009).
-
(2009)
Development
, vol.136
, pp. 2311-2322
-
-
Chambers, I.1
Tomlinson, S.R.2
-
48
-
-
0032582513
-
Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4
-
DOI 10.1016/S0092-8674(00)81769-9
-
Nichols, J. et al. Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4. Cell 95, 379-391 (1998). (Pubitemid 28507326)
-
(1998)
Cell
, vol.95
, Issue.3
, pp. 379-391
-
-
Nichols, J.1
Zevnik, B.2
Anastassiadis, K.3
Niwa, H.4
Klewe-Nebenius, D.5
Chambers, I.6
Scholer, H.7
Smith, A.8
-
49
-
-
68749110887
-
Nanog is the gateway to the pluripotent ground state
-
Silva, J. et al. Nanog is the gateway to the pluripotent ground state. Cell 138, 722-737 (2009).
-
(2009)
Cell
, vol.138
, pp. 722-737
-
-
Silva, J.1
-
50
-
-
0037227099
-
Multipotent cell lineages in early mouse development depend on SOX2 function
-
DOI 10.1101/gad.224503
-
Avilion, A. A. et al. Multipotent cell lineages in early mouse development depend on SOX2 function. Genes Dev. 17, 126-140 (2003). (Pubitemid 36062514)
-
(2003)
Genes and Development
, vol.17
, Issue.1
, pp. 126-140
-
-
Avilion, A.A.1
Nicolis, S.K.2
Pevny, L.H.3
Perez, L.4
Vivian, N.5
Lovell-Badge, R.6
-
51
-
-
0032489520
-
DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139
-
DOI 10.1074/jbc.273.10.5858
-
Rogakou, E. P., Pilch, D. R., Orr, A. H., Ivanova, V. S. & Bonner, W. M. DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139. J. Biol. Chem. 273, 5858-5868 (1998). (Pubitemid 28124064)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.10
, pp. 5858-5868
-
-
Rogakou, E.P.1
Pilch, D.R.2
Orr, A.H.3
Ivanova, V.S.4
Bonner, W.M.5
-
52
-
-
84859265962
-
Active DNA demethylation by Gadd45 and DNA repair
-
Niehrs, C. & Schafer, A. Active DNA demethylation by Gadd45 and DNA repair. Trends Cell Biol. 22, 220-227 (2012).
-
(2012)
Trends Cell Biol
, vol.22
, pp. 220-227
-
-
Niehrs, C.1
Schafer, A.2
-
53
-
-
50849104569
-
Double strand breaks can initiate gene silencing and SIRT1-dependent onset of DNA methylation in an exogenous promoter CpG island
-
O'Hagan, H. M., Mohammad, H. P. & Baylin, S. B. Double strand breaks can initiate gene silencing and SIRT1-dependent onset of DNA methylation in an exogenous promoter CpG island. PLoS Genet. 4, e1000155 (2008).
-
(2008)
PLoS Genet
, vol.4
-
-
O'Hagan, H.M.1
Mohammad, H.P.2
Baylin, S.B.3
-
54
-
-
79961225321
-
Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoi somerase i to enhance recruitment of RNA Pol II in budding yeast
-
Sperling, A. S., Jeong, K. S., Kitada, T. & Grunstein, M. Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase I to enhance recruitment of RNA Pol II in budding yeast. Proc. Natl Acad. Sci. USA 108, 12693-12698 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 12693-12698
-
-
Sperling, A.S.1
Jeong, K.S.2
Kitada, T.3
Grunstein, M.4
-
55
-
-
0344875486
-
Elongation by RNA polymerase II on chromatin templates requires topoisomerase activity
-
DOI 10.1093/nar/gkg705
-
Mondal, N. et al. Elongation by RNA polymerase II on chromatin templates requires topoisomerase activity. Nucleic Acids Res. 31, 5016-5024 (2003). (Pubitemid 37441868)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.17
, pp. 5016-5024
-
-
Mondal, N.1
Zhang, Y.2
Jonsson, Z.3
Dhar, S.K.4
Kannapiran, M.5
Parvin, J.D.6
-
56
-
-
34447277157
-
Ringo-an R/bioconductor package for analyzing ChIP-chip readouts
-
Toedling, J. et al. Ringo-an R/bioconductor package for analyzing ChIP-chip readouts. BMC Bioinform. 8, 221 (2007).
-
(2007)
BMC Bioinform
, vol.8
, pp. 221
-
-
Toedling, J.1
-
58
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
59
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106 (2010).
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
60
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
61
-
-
54949147307
-
F-Seq: A feature density estimator for high-throughput sequence tags
-
Boyle, A. P., Guinney, J., Crawford, G. E. & Furey, T. S. F-Seq: a feature density estimator for high-throughput sequence tags. Bioinformatics 24, 2537-2538 (2008).
-
(2008)
Bioinformatics
, vol.24
, pp. 2537-2538
-
-
Boyle, A.P.1
Guinney, J.2
Crawford, G.E.3
Furey, T.S.4
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