-
1
-
-
67749117934
-
Signal integration by JNK and p38 MAPK pathways in cancer development
-
Wagner, E.F. & Nebreda, A.R. Signal integration by JNK and p38 MAPK pathways in cancer development. Nat. Rev. Cancer 9, 537-549 (2009).
-
(2009)
Nat. Rev. Cancer
, vol.9
, pp. 537-549
-
-
Wagner, E.F.1
Nebreda, A.R.2
-
2
-
-
21344474327
-
From JNK to pay dirt: Jun kinases, their biochemistry, physiology and clinical importance
-
DOI 10.1080/15216540500097111
-
Karin, M. & Gallagher, E. From JNK to pay dirt: jun kinases, their biochemistry, physiology and clinical importance. IUBMB Life 57, 283-295 (2005). (Pubitemid 40904256)
-
(2005)
IUBMB Life
, vol.57
, Issue.4-5
, pp. 283-295
-
-
Karin, M.1
Gallagher, E.2
-
3
-
-
33847754623
-
The JNK signal transduction pathway
-
DOI 10.1016/j.ceb.2007.02.001, PII S0955067407000154
-
Weston, C.R. & Davis, R.J. The JNK signal transduction pathway. Curr. Opin. Cell Biol. 19, 142-149 (2007). (Pubitemid 46386399)
-
(2007)
Current Opinion in Cell Biology
, vol.19
, Issue.2
, pp. 142-149
-
-
Weston, C.R.1
Davis, R.J.2
-
4
-
-
33845653234
-
Uses for JNK: The many and varied substrates of the c-Jun N-terminal kinases
-
DOI 10.1128/MMBR.00025-06
-
Bogoyevitch, M.A. & Kobe, B. Uses for JNK: the many and varied substrates of the c-Jun N-terminal kinases. Microbiol. Mol. Biol. Rev. 70, 1061-1095 (2006). (Pubitemid 44958264)
-
(2006)
Microbiology and Molecular Biology Reviews
, vol.70
, Issue.4
, pp. 1061-1095
-
-
Bogoyevitch, M.A.1
Kobe, B.2
-
5
-
-
0034997845
-
Mitogen-activated protein (MAP) kinase pathways: Regulation and physiological functions
-
DOI 10.1210/er.22.2.153
-
Pearson, G. et al. Mitogen-activated protein (MAP) kinase pathways: regulation and physiological functions. Endocr. Rev. 22, 153-183 (2001). (Pubitemid 32458157)
-
(2001)
Endocrine Reviews
, vol.22
, Issue.2
, pp. 153-183
-
-
Pearson, G.1
Robinson, F.2
Gibson, T.B.3
Xu, B.-E.4
Karandikar, M.5
Berman, K.6
Cobb, M.H.7
-
6
-
-
77956919550
-
Polycomb group protein displacement and gene activation through MSK-dependent H3K27me3S28 phosphorylation
-
Gehani, S.S. et al. Polycomb group protein displacement and gene activation through MSK-dependent H3K27me3S28 phosphorylation. Mol. Cell 39, 886-900 (2010).
-
(2010)
Mol. Cell
, vol.39
, pp. 886-900
-
-
Gehani, S.S.1
-
7
-
-
41849088475
-
The roles of MAPKs in disease
-
DOI 10.1038/cr.2008.37, PII CR200837
-
Lawrence, M.C. et al. The roles of MAPKs in disease. Cell Res. 18, 436-442 (2008). (Pubitemid 351498850)
-
(2008)
Cell Research
, vol.18
, Issue.4
, pp. 436-442
-
-
Lawrence, M.C.1
Jivan, A.2
Shao, C.3
Duan, L.4
Goad, D.5
Zaganjor, E.6
Osborne, J.7
McGlynn, K.8
Stippec, S.9
Earnest, S.10
Chen, W.11
Cobb, M.H.12
-
8
-
-
33746611519
-
Activated signal transduction kinases frequently occupy target genes
-
DOI 10.1126/science.1127677
-
Pokholok, D.K., Zeitlinger, J., Hannett, N.M., Reynolds, D.B. & Young, R.A. Activated signal transduction kinases frequently occupy target genes. Science 313, 533-536 (2006). (Pubitemid 44148460)
-
(2006)
Science
, vol.313
, Issue.5786
, pp. 533-536
-
-
Pokholok, D.K.1
Zeitlinger, J.2
Hannett, N.M.3
Reynolds, D.B.4
Young, R.A.5
-
9
-
-
70350340058
-
Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling
-
Hu, S. et al. Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling. Cell 139, 610-622 (2009).
-
(2009)
Cell
, vol.139
, pp. 610-622
-
-
Hu, S.1
-
10
-
-
77956294919
-
Signaling kinase AMPK activates stress-promoted transcription via histone H2B phosphorylation
-
Bungard, D. et al. Signaling kinase AMPK activates stress-promoted transcription via histone H2B phosphorylation. Science 329, 1201-1205 (2010).
-
(2010)
Science
, vol.329
, pp. 1201-1205
-
-
Bungard, D.1
-
11
-
-
3042763342
-
P38 pathway targets SWI-SNF chromatin-remodeling complex to muscle-specific loci
-
DOI 10.1038/ng1378
-
Simone, C. et al. p38 pathway targets SWI-SNF chromatin-remodeling complex to muscle-specific loci. Nat. Genet. 36, 738-743 (2004). (Pubitemid 38886636)
-
(2004)
Nature Genetics
, vol.36
, Issue.7
, pp. 738-743
-
-
Simone, C.1
Forcales, S.V.2
Hill, D.A.3
Imbalzano, A.N.4
Latella, L.5
Puri, P.L.6
-
12
-
-
34247618721
-
Concise review: Regulation of embryonic stem cell lineage commitment by mitogen-activated protein kinases
-
DOI 10.1634/stemcells.2006-0612
-
Binétruy, B., Heasley, L., Bost, F., Caron, L. & Aouadi, M. Concise review: regulation of embryonic stem cell lineage commitment by mitogen-activated protein kinases. Stem Cells 25, 1090-1095 (2007). (Pubitemid 46684867)
-
(2007)
Stem Cells
, vol.25
, Issue.5
, pp. 1090-1095
-
-
Binetruy, B.1
Heasley, L.2
Bost, F.3
Caron, L.4
Aouadi, M.5
-
13
-
-
28544435630
-
Inhibited neurogenesis in JNK1-deficient embryonic stem cells
-
DOI 10.1128/MCB.25.24.10791-10802.2005
-
Amura, C.R., Marek, L., Winn, R.A. & Heasley, L.E. Inhibited neurogenesis in JNK1-deficient embryonic stem cells. Mol. Cell. Biol. 25, 10791-10802 (2005). (Pubitemid 41747124)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.24
, pp. 10791-10802
-
-
Amura, C.R.1
Marek, L.2
Winn, R.A.3
Heasley, L.E.4
-
14
-
-
0347481278
-
In Vitro Development of Mouse Embryonic Stem Cells Lacking JNK/Stress-activated Protein Kinase-associated Protein 1 (JSAP1) Scaffold Protein Revealed Its Requirement during Early Embryonic Neurogenesis
-
DOI 10.1074/jbc.M307888200
-
Xu, P. et al. In vitro development of mouse embryonic stem cells lacking JNK/stressactivated protein kinase-associated protein 1 (JSAP1) scaffold protein revealed its requirement during early embryonic neurogenesis. J. Biol. Chem. 278, 48422-48433 (2003). (Pubitemid 37523298)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.48
, pp. 48422-48433
-
-
Xu, P.1
Yoshioka, K.2
Yoshimura, D.3
Tominaga, Y.4
Nishioka, T.5
Ito, M.6
Nakabeppu, Y.7
-
15
-
-
9444264775
-
Developmental potential of defined neural progenitors derived from mouse embryonic stem cells
-
DOI 10.1242/dev.01420
-
Plachta, N., Bibel, M., Tucker, K.L. & Barde, Y.A. Developmental potential of defined neural progenitors derived from mouse embryonic stem cells. Development 131, 5449-5456 (2004). (Pubitemid 39562187)
-
(2004)
Development
, vol.131
, Issue.21
, pp. 5449-5456
-
-
Plachta, N.1
Bibel, M.2
Tucker, K.L.3
Barde, Y.-A.4
-
16
-
-
34250192881
-
Generation of a defined and uniform population of CNS progenitors and neurons from mouse embryonic stem cells
-
DOI 10.1038/nprot.2007.147, PII NPROT.2007.147
-
Bibel, M., Richter, J., Lacroix, E. & Barde, Y.A. Generation of a defined and uniform population of CNS progenitors and neurons from mouse embryonic stem cells. Nat. Protoc. 2, 1034-1043 (2007). (Pubitemid 46901284)
-
(2007)
Nature Protocols
, vol.2
, Issue.5
, pp. 1034-1043
-
-
Bibel, M.1
Richter, J.2
Lacroix, E.3
Barde, Y.-A.4
-
17
-
-
4344601961
-
Differentiation of mouse embryonic stem cells into a defined neuronal lineage
-
DOI 10.1038/nn1301
-
Bibel, M. et al. Differentiation of mouse embryonic stem cells into a defined neuronal lineage. Nat. Neurosci. 7, 1003-1009 (2004). (Pubitemid 39129511)
-
(2004)
Nature Neuroscience
, vol.7
, Issue.9
, pp. 1003-1009
-
-
Bibel, M.1
Richter, J.2
Schrenk, K.3
Tucker, K.L.4
Staiger, V.5
Korte, M.6
Goetz, M.7
Barde, Y.-A.8
-
18
-
-
34248597065
-
Differential regulation and properties of MAPKs
-
DOI 10.1038/sj.onc.1210392, PII 1210392
-
Raman, M., Chen, W. & Cobb, M.H. Differential regulation and properties of MAPKs. Oncogene 26, 3100-3112 (2007). (Pubitemid 46763006)
-
(2007)
Oncogene
, vol.26
, Issue.22
, pp. 3100-3112
-
-
Raman, M.1
Chen, W.2
Cobb, M.H.3
-
19
-
-
0036629349
-
Cell adhesion differentially regulates the nucleocytoplasmic distribution of active MAP kinases
-
Aplin, A.E., Hogan, B.P., Tomeu, J. & Juliano, R.L. Cell adhesion differentially regulates the nucleocytoplasmic distribution of active MAP kinases. J. Cell Sci. 115, 2781-2790 (2002). (Pubitemid 34846518)
-
(2002)
Journal of Cell Science
, vol.115
, Issue.13
, pp. 2781-2790
-
-
Aplin, A.E.1
Hogan, B.P.2
Tomeu, J.3
Juliano, R.L.4
-
21
-
-
33747823564
-
MEME: Discovering and analyzing DNA and protein sequence motifs
-
DOI 10.1093/nar/gkl198
-
Bailey, T.L., Williams, N., Misleh, C. & Li, W.W. MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 34, W369-W373 (2006). (Pubitemid 44529795)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS.
-
-
Bailey, T.L.1
Williams, N.2
Misleh, C.3
Li, W.W.4
-
22
-
-
77949916262
-
AP-1-The Jun proteins: Oncogenes or tumor suppressors in disguise?
-
Shaulian, E. AP-1-the Jun proteins: oncogenes or tumor suppressors in disguise? Cell. Signal. 22, 894-899 (2010).
-
(2010)
Cell. Signal.
, vol.22
, pp. 894-899
-
-
Shaulian, E.1
-
23
-
-
74849135205
-
A perspective of promoter architecture from the CCAAT box
-
Dolfini, D., Zambelli, F., Pavesi, G. & Mantovani, R. A perspective of promoter architecture from the CCAAT box. Cell Cycle 8, 4127-4137 (2009).
-
(2009)
Cell Cycle
, vol.8
, pp. 4127-4137
-
-
Dolfini, D.1
Zambelli, F.2
Pavesi, G.3
Mantovani, R.4
-
24
-
-
0027941626
-
Dominant-negative analogs of NF-YA
-
Mantovani, R. et al. Dominant-negative analogs of NF-YA. J. Biol. Chem. 269, 20340-20346 (1994).
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 20340-20346
-
-
Mantovani, R.1
-
25
-
-
0035923665
-
SP600125, an anthrapyrazolone inhibitor of Jun N-terminal kinase
-
DOI 10.1073/pnas.251194298
-
Bennett, B.L. et al. SP600125, an anthrapyrazolone inhibitor of Jun N-terminal kinase. Proc. Natl. Acad. Sci. USA 98, 13681-13686 (2001). (Pubitemid 33115958)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.24
, pp. 13681-13686
-
-
Bennett, B.L.1
Sasaki, D.T.2
Murray, B.W.3
O'Leary, E.C.4
Sakata, S.T.5
Xu, W.6
Leisten, J.C.7
Motiwala, A.8
Pierce, S.9
Satoh, Y.10
Bhagwat, S.S.11
Manning, A.M.12
Anderson, D.W.13
-
26
-
-
79955505888
-
When signaling kinases meet histones and histone modifiers in the nucleus
-
Baek, S.H. When signaling kinases meet histones and histone modifiers in the nucleus. Mol. Cell 42, 274-284 (2011).
-
(2011)
Mol. Cell
, vol.42
, pp. 274-284
-
-
Baek, S.H.1
-
27
-
-
38849133722
-
Transcription factor NF-Y is involved in regulation of the JNK pathway during Drosophila thorax development
-
DOI 10.1111/j.1365-2443.2007.01155.x
-
Yoshioka, Y., Suyari, O. & Yamaguchi, M. Transcription factor NF-Y is involved in regulation of the JNK pathway during Drosophila thorax development. Genes Cells 13, 117-130 (2008). (Pubitemid 351188983)
-
(2008)
Genes to Cells
, vol.13
, Issue.2
, pp. 117-130
-
-
Yoshioka, Y.1
Suyari, O.2
Yamaguchi, M.3
-
28
-
-
0035877663
-
Autoregulation of cell-specific MAP kinase control of the tryptophan hydroxylase promoter
-
Wood, J.L. & Russo, A.F. Autoregulation of cell-specific MAP kinase control of the tryptophan hydroxylase promoter. J. Biol. Chem. 276, 21262-21271 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 21262-21271
-
-
Wood, J.L.1
Russo, A.F.2
-
29
-
-
33745047111
-
Cell type-dependent control of NF-Y activity by TGF-β
-
DOI 10.1038/sj.onc.1209385, PII 1209385
-
Alabert, C. et al. Cell type-dependent control of NF-Y activity by TGF-β. Oncogene 25, 3387-3396 (2006). (Pubitemid 43877042)
-
(2006)
Oncogene
, vol.25
, Issue.24
, pp. 3387-3396
-
-
Alabert, C.1
Rogers, L.2
Kahn, L.3
Niellez, S.4
Fafet, P.5
Cerulis, S.6
Blanchard, J.M.7
Hipskind, R.A.8
Vignais, M.-L.9
-
30
-
-
47949131755
-
Upregulation of annexin A1 expression by butyrate in human colon adenocarcinoma cells: Role of p53, NF-Y, and p38 mitogen-activated protein kinase
-
Lecona, E. et al. Upregulation of annexin A1 expression by butyrate in human colon adenocarcinoma cells: role of p53, NF-Y, and p38 mitogen-activated protein kinase. Mol. Cell. Biol. 28, 4665-4674 (2008).
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 4665-4674
-
-
Lecona, E.1
-
31
-
-
16644381829
-
Wnt signaling through Dishevelled, Rac and JNK regulates dendritic development
-
DOI 10.1038/nn1374
-
Rosso, S.B., Sussman, D., Wynshaw-Boris, A. & Salinas, P.C. Wnt signaling through Dishevelled, Rac and JNK regulates dendritic development. Nat. Neurosci. 8, 34-42 (2005). (Pubitemid 41236729)
-
(2005)
Nature Neuroscience
, vol.8
, Issue.1
, pp. 34-42
-
-
Rosso, S.B.1
Sussman, D.2
Wynshaw-Boris, A.3
Salinas, P.C.4
-
32
-
-
33748689930
-
Activated c-Jun N-terminal kinase is required for axon formation
-
DOI 10.1523/JNEUROSCI.2625-06.2006
-
Oliva, A.A. Jr. Atkins, C.M., Copenagle, L. & Banker, G.A. Activated c-Jun N-terminal kinase is required for axon formation. J. Neurosci. 26, 9462-9470 (2006). (Pubitemid 44396859)
-
(2006)
Journal of Neuroscience
, vol.26
, Issue.37
, pp. 9462-9470
-
-
Oliva Jr., A.A.1
Atkins, C.M.2
Copenagle, L.3
Banker, G.A.4
-
33
-
-
70349975711
-
JAK2 phosphorylates histone H3Y41 and excludes HP1α from chromatin
-
Dawson, M.A. et al. JAK2 phosphorylates histone H3Y41 and excludes HP1α from chromatin. Nature 461, 819-822 (2009).
-
(2009)
Nature
, vol.461
, pp. 819-822
-
-
Dawson, M.A.1
-
34
-
-
4444320809
-
MAP kinases as structural adaptors and enzymatic activators in transcription complexes
-
DOI 10.1242/jcs.01346
-
Edmunds, J.W. & Mahadevan, L.C. MAP kinases as structural adaptors and enzymatic activators in transcription complexes. J. Cell Sci. 117, 3715-3723 (2004). (Pubitemid 39207311)
-
(2004)
Journal of Cell Science
, vol.117
, Issue.17
, pp. 3715-3723
-
-
Edmunds, J.W.1
Mahadevan, L.C.2
-
35
-
-
32244431871
-
The JIL-1 histone H3S10 kinase regulates dimethyl H3K9 modifications and heterochromatic spreading in Drosophila
-
DOI 10.1242/dev.02199
-
Zhang, W. et al. The JIL-1 histone H3S10 kinase regulates dimethyl H3K9 modifications and heterochromatic spreading in Drosophila. Development 133, 229-235 (2006). (Pubitemid 43210712)
-
(2006)
Development
, vol.133
, Issue.2
, pp. 229-235
-
-
Zhang, W.1
Deng, H.2
Bao, X.3
Lerach, S.4
Girton, J.5
Johansen, J.6
Johansen, K.M.7
-
36
-
-
0141613756
-
Phosphorylation of serine 10 in histone H3, what for?
-
DOI 10.1242/jcs.00735
-
Prigent, C. & Dimitrov, S. Phosphorylation of serine 10 in histone H3, what for? J. Cell Sci. 116, 3677-3685 (2003). (Pubitemid 37185297)
-
(2003)
Journal of Cell Science
, vol.116
, Issue.18
, pp. 3677-3685
-
-
Prigent, C.1
Dimitrov, S.2
-
37
-
-
1642326716
-
Phosphorylation of histone H3: A balancing act between chromosome condensation and transcriptional activation
-
DOI 10.1016/j.tig.2004.02.007, PII S0168952504000459
-
Nowak, S.J. & Corces, V.G. Phosphorylation of histone H3: a balancing act between chromosome condensation and transcriptional activation. Trends Genet. 20, 214-220 (2004). (Pubitemid 38369193)
-
(2004)
Trends in Genetics
, vol.20
, Issue.4
, pp. 214-220
-
-
Nowak, S.J.1
Corces, V.G.2
-
38
-
-
28844477653
-
Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation
-
DOI 10.1038/nature04219
-
Fischle, W. et al. Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation. Nature 438, 1116-1122 (2005). (Pubitemid 41831675)
-
(2005)
Nature
, vol.438
, Issue.7071
, pp. 1116-1122
-
-
Fischle, W.1
Boo, S.T.2
Dormann, H.L.3
Ueberheide, B.M.4
Garcia, B.A.5
Shabanowitz, J.6
Hunt, D.F.7
Funabiki, H.8
Allis, C.D.9
-
39
-
-
0037497184
-
A nucleosomal function for iκb kinase-α in nf-κb-dependent gene expression
-
DOI 10.1038/nature01648
-
Anest, V. et al. A nucleosomal function for IκB kinase-α in NF-κB-dependent gene expression. Nature 423, 659-663 (2003). (Pubitemid 36713228)
-
(2003)
Nature
, vol.423
, Issue.6940
, pp. 659-663
-
-
Anest, V.1
Hanson, J.L.2
Cogswell, P.C.3
Steinbrecher, K.A.4
Strahl, B.D.5
Baldwin, A.S.6
-
40
-
-
66449106900
-
Histone H3 phosphorylation: Universal code or lineage specific dialects?
-
Cerutti, H. & Casas-Mollano, J.A. Histone H3 phosphorylation: universal code or lineage specific dialects? Epigenetics 4, 71-75 (2009).
-
(2009)
Epigenetics
, vol.4
, pp. 71-75
-
-
Cerutti, H.1
Casas-Mollano, J.A.2
-
41
-
-
21044450362
-
MAP kinase-mediated phosphorylation of distinct pools of histone H3 at S10 or S28 via mitogen- and stress-activated kinase 1/2
-
DOI 10.1242/jcs.02373
-
Dyson, M.H. et al. MAP kinase-mediated phosphorylation of distinct pools of histone H3 at S10 or S28 via mitogen- and stress-activated kinase 1/2. J. Cell Sci. 118, 2247-2259 (2005). (Pubitemid 40872846)
-
(2005)
Journal of Cell Science
, vol.118
, Issue.10
, pp. 2247-2259
-
-
Dyson, M.H.1
Thomson, S.2
Inagaki, M.3
Goto, H.4
Arthur, S.J.5
Nightingale, K.6
Iborra, F.J.7
Mahadevan, L.C.8
-
42
-
-
70349694389
-
H3 phosphorylation: Dual role in mitosis and interphase
-
Pérez-Cadahía, B., Drobic, B. & Davie, J.R. H3 phosphorylation: dual role in mitosis and interphase. Biochem. Cell Biol. 87, 695-709 (2009).
-
(2009)
Biochem. Cell Biol.
, vol.87
, pp. 695-709
-
-
Pérez-Cadahía, B.1
Drobic, B.2
Davie, J.R.3
-
43
-
-
0033529706
-
Requirement of Rsk-2 for epidermal growth factor-activated phosphorylation of histone H3
-
DOI 10.1126/science.285.5429.886
-
Sassone-Corsi, P. et al. Requirement of Rsk-2 for epidermal growth factor-activated phosphorylation of histone H3. Science 285, 886-891 (1999). (Pubitemid 29381988)
-
(1999)
Science
, vol.285
, Issue.5429
, pp. 886-891
-
-
Sassone-Corsi, P.1
Mizzen, C.A.2
Cheung, P.3
Crosio, C.4
Monaco, L.5
Jacquot, S.6
Hanauer, A.7
Allis, C.D.8
-
44
-
-
0038511129
-
Histone H3 phosphorylation by ikk-α is critical for cytokine-induced gene expression
-
DOI 10.1038/nature01576
-
Yamamoto, Y., Verma, U.N., Prajapati, S., Kwak, Y.T. & Gaynor, R.B. Histone H3 phosphorylation by IKK-α is critical for cytokine-induced gene expression. Nature 423, 655-659 (2003). (Pubitemid 36713227)
-
(2003)
Nature
, vol.423
, Issue.6940
, pp. 655-659
-
-
Yumi, Y.1
Verma, U.N.2
Prajapati, S.3
Youn-Tae, K.4
Gaynor, R.B.5
-
45
-
-
34547599505
-
PIM1-dependent phosphorylation of histone H3 at serine 10 is required for MYC-dependent transcriptional activation and oncogenic transformation
-
DOI 10.1038/ncb1618, PII NCB1618
-
Zippo, A., De Robertis, A., Serafini, R. & Oliviero, S. PIM1-dependent phosphorylation of histone H3 at serine 10 is required for MYC-dependent transcriptional activation and oncogenic transformation. Nat. Cell Biol. 9, 932-944 (2007). (Pubitemid 47190448)
-
(2007)
Nature Cell Biology
, vol.9
, Issue.8
, pp. 932-944
-
-
Zippo, A.1
De Robertis, A.2
Serafini, R.3
Oliviero, S.4
-
46
-
-
51649129596
-
Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors
-
Mohn, F. et al. Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors. Mol. Cell 30, 755-766 (2008).
-
(2008)
Mol. Cell
, vol.30
, pp. 755-766
-
-
Mohn, F.1
-
47
-
-
58549085778
-
An integrated workflow for charting the human interaction proteome: Insights into the PP2A system
-
Glatter, T., Wepf, A., Aebersold, R. & Gstaiger, M. An integrated workflow for charting the human interaction proteome: insights into the PP2A system. Mol. Syst. Biol. 5, 237 (2009).
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 237
-
-
Glatter, T.1
Wepf, A.2
Aebersold, R.3
Gstaiger, M.4
-
48
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
49
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008).
-
(2008)
Genome Biol.
, vol.9
-
-
Zhang, Y.1
-
50
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey, T.L. & Elkan, C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2, 28-36 (1994).
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
51
-
-
38549096565
-
JASPAR, the open access database of transcription factor-binding profiles: New content and tools in the 2008 update
-
DOI 10.1093/nar/gkm955
-
Bryne, J.C. et al. JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Res. 36, D102-D106 (2008). (Pubitemid 351149704)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Bryne, J.C.1
Valen, E.2
Tang, M.-H.E.3
Marstrand, T.4
Winther, O.5
Da Piedade, I.6
Krogh, A.7
Lenhard, B.8
Sandelin, A.9
-
52
-
-
0031877016
-
Combining evidence using p-values: Application to sequence homology searches
-
Bailey, T.L. & Gribskov, M. Combining evidence using p-values: application to sequence homology searches. Bioinformatics 14, 48-54 (1998). (Pubitemid 28395676)
-
(1998)
Bioinformatics
, vol.14
, Issue.1
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
53
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman, R.C. et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80 (2004).
-
(2004)
Genome Biol.
, vol.5
-
-
Gentleman, R.C.1
-
54
-
-
77957230671
-
A framework for oligonucleotide microarray preprocessing
-
Carvalho, B.S. & Irizarry, R.A. A framework for oligonucleotide microarray preprocessing. Bioinformatics 26, 2363-2367 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2363-2367
-
-
Carvalho, B.S.1
Irizarry, R.A.2
|