-
1
-
-
52049127039
-
From synapse to nucleus: Calcium-dependent gene transcription in the control of synapse development and function
-
Greer, P.L. & Greenberg, M.E. From synapse to nucleus: calcium-dependent gene transcription in the control of synapse development and function. Neuron 59, 846-860 (2008).
-
(2008)
Neuron
, vol.59
, pp. 846-860
-
-
Greer, P.L.1
Greenberg, M.E.2
-
2
-
-
79958770852
-
Activity-regulated genes as mediators of neural circuit plasticity
-
Leslie, J.H. & Nedivi, E. Activity-regulated genes as mediators of neural circuit plasticity. Prog. Neurobiol. 94, 223-237 (2011).
-
(2011)
Prog. Neurobiol
, vol.94
, pp. 223-237
-
-
Leslie, J.H.1
Nedivi, E.2
-
3
-
-
27644551416
-
Critical period plasticity in local cortical circuits
-
Hensch, T.K. Critical period plasticity in local cortical circuits. Nat. Rev. Neurosci. 6, 877-888 (2005).
-
(2005)
Nat. Rev. Neurosci
, vol.6
, pp. 877-888
-
-
Hensch, T.K.1
-
4
-
-
58249118862
-
Transcription factors in long-term memory and synaptic plasticity
-
Alberini, C.M. Transcription factors in long-term memory and synaptic plasticity. Physiol. Rev. 89, 121-145 (2009).
-
(2009)
Physiol. Rev
, vol.89
, pp. 121-145
-
-
Alberini, C.M.1
-
5
-
-
79958038559
-
Epigenetic mechanisms in cognition
-
Day, J.J. & Sweatt, J.D. Epigenetic mechanisms in cognition. Neuron 70, 813-829 (2011).
-
(2011)
Neuron
, vol.70
, pp. 813-829
-
-
Day, J.J.1
Sweatt, J.D.2
-
6
-
-
79958766042
-
Mechanisms of specificity in neuronal activity-regulated gene transcription
-
Lyons, M.R. & West, A.E. Mechanisms of specificity in neuronal activity-regulated gene transcription. Prog. Neurobiol. 94, 259-295 (2011).
-
(2011)
Prog. Neurobiol
, vol.94
, pp. 259-295
-
-
Lyons, M.R.1
West, A.E.2
-
7
-
-
0033153155
-
Synaptic clustering of AMPA receptors by the extracellular immediate-early gene product Narp
-
OBrien, R.J. et al. Synaptic clustering of AMPA receptors by the extracellular immediate-early gene product Narp. Neuron 23, 309-323 (1999).
-
(1999)
Neuron
, vol.23
, pp. 309-323
-
-
OBrien, R.J.1
-
8
-
-
52049117013
-
A biological function for the neuronal activity-dependent component of Bdnf transcription in the development of cortical inhibition
-
Hong, E.J., McCord, A.E. & Greenberg, M.E. A biological function for the neuronal activity-dependent component of Bdnf transcription in the development of cortical inhibition. Neuron 60, 610-624 (2008).
-
(2008)
Neuron
, vol.60
, pp. 610-624
-
-
Hong, E.J.1
McCord, A.E.2
Greenberg, M.E.3
-
9
-
-
52049102989
-
Activity-dependent regulation of inhibitory synapse development by Npas4
-
Lin, Y. et al. Activity-dependent regulation of inhibitory synapse development by Npas4. Nature 455, 1198-1204 (2008).
-
(2008)
Nature
, vol.455
, pp. 1198-1204
-
-
Lin, Y.1
-
10
-
-
84872593582
-
Activity-dependent neuronal signalling and autism spectrum disorder
-
Ebert, D.H. & Greenberg, M.E. Activity-dependent neuronal signalling and autism spectrum disorder. Nature 493, 327-337 (2013).
-
(2013)
Nature
, vol.493
, pp. 327-337
-
-
Ebert, D.H.1
Greenberg, M.E.2
-
11
-
-
0021213870
-
Stimulation of 3T3 cells induces transcription of the c-fos proto-oncogene
-
Greenberg, M.E. & Ziff, E.B. Stimulation of 3T3 cells induces transcription of the c-fos proto-oncogene. Nature 311, 433-438 (1984).
-
(1984)
Nature
, vol.311
, pp. 433-438
-
-
Greenberg, M.E.1
Ziff, E.B.2
-
12
-
-
0023034795
-
Stimulation of neuronal acetylcholine receptors induces rapid gene transcription
-
Greenberg, M.E., Ziff, E.B. & Greene, L.A. Stimulation of neuronal acetylcholine receptors induces rapid gene transcription. Science 234, 80-83 (1986).
-
(1986)
Science
, vol.234
, pp. 80-83
-
-
Greenberg, M.E.1
Ziff, E.B.2
Greene, L.A.3
-
13
-
-
0242691046
-
AP-1: A double-edged sword in tumorigenesis
-
Eferl, R. & Wagner, E.F. AP-1: a double-edged sword in tumorigenesis. Nat. Rev. Cancer 3, 859-868 (2003).
-
(2003)
Nat. Rev. Cancer
, vol.3
, pp. 859-868
-
-
Eferl, R.1
Wagner, E.F.2
-
14
-
-
0019811465
-
Expression of a β-globin gene is enhanced by remote SV40 DNA sequences
-
Banerji, J., Rusconi, S. & Schaffner, W. Expression of a β-globin gene is enhanced by remote SV40 DNA sequences. Cell 27, 299-308 (1981).
-
(1981)
Cell
, vol.27
, pp. 299-308
-
-
Banerji, J.1
Rusconi, S.2
Schaffner, W.3
-
15
-
-
77956495708
-
Transcriptional enhancers in animal development and evolution
-
Levine, M. Transcriptional enhancers in animal development and evolution. Curr. Biol. 20, R754-R763 (2010).
-
(2011)
Curr. Biol
, vol.20
, pp. R754-R763
-
-
Levine, M.1
-
16
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman, N.D. et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 39, 311-318 (2007).
-
(2007)
Nat. Genet
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
-
17
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
Visel, A. et al. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457, 854-858 (2009).
-
(2009)
Nature
, vol.457
, pp. 854-858
-
-
Visel, A.1
-
18
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim, T.K. et al. Widespread transcription at neuronal activity-regulated enhancers. Nature 465, 182-187 (2010).
-
(2011)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
-
19
-
-
84865822182
-
Systematic localization of common disease-Associated variation in regulatory DNA
-
Maurano, M.T. et al. Systematic localization of common disease-Associated variation in regulatory DNA. Science 337, 1190-1195 (2012).
-
(2012)
Science
, vol.337
, pp. 1190-1195
-
-
Maurano, M.T.1
-
20
-
-
84874118170
-
A high-resolution enhancer atlas of the developing telencephalon
-
Visel, A. et al. A high-resolution enhancer atlas of the developing telencephalon. Cell 152, 895-908 (2013).
-
(2013)
Cell
, vol.152
, pp. 895-908
-
-
Visel, A.1
-
21
-
-
84874264911
-
Seq-ing" insights into the epigenetics of neuronal gene regulation
-
Telese, F., Gamliel, A., Skowronska-Krawczyk, D., Garcia-Bassets, I. & Rosenfeld, M.G. "Seq-ing" insights into the epigenetics of neuronal gene regulation. Neuron 77, 606-623 (2013).
-
(2013)
Neuron
, vol.77
, pp. 606-623
-
-
Telese, F.1
Gamliel, A.2
Skowronska-Krawczyk, D.3
Garcia-Bassets, I.4
Rosenfeld, M.G.5
-
22
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton, M.P. et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl. Acad. Sci. USA 107, 21931-21936 (2010).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
-
23
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias, A. et al. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470, 279-283 (2011).
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
-
24
-
-
84876836223
-
Modification of enhancer chromatin: What, how, and why?
-
Calo, E. & Wysocka, J. Modification of enhancer chromatin: what, how, and why? Mol. Cell 49, 825-837 (2013).
-
(2013)
Mol. Cell
, vol.49
, pp. 825-837
-
-
Calo, E.1
Wysocka, J.2
-
25
-
-
0029156234
-
Human neuronal pentraxin II (NPTX2): Conservation, genomic structure, and chromosomal localization
-
Hsu, Y.C. & Perin, M.S. Human neuronal pentraxin II (NPTX2): conservation, genomic structure, and chromosomal localization. Genomics 28, 220-227 (1995).
-
(1995)
Genomics
, vol.28
, pp. 220-227
-
-
Hsu, Y.C.1
Perin, M.S.2
-
26
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen, Y. et al. A map of the cis-regulatory sequences in the mouse genome. Nature 488, 116-120 (2012).
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
-
27
-
-
84865121188
-
An encyclopedia of mouse DNA elements (Mouse ENCODE
-
Mouse ENCODE Consortium.et al
-
Mouse ENCODE Consortium. et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol. 13, 418 (2012).
-
(2012)
Genome Biol
, vol.13
, pp. 418
-
-
-
28
-
-
30044449116
-
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS
-
Crawford, G.E. et al. Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS). Genome Res. 16, 123-131 (2006).
-
(2006)
Genome Res
, vol.16
, pp. 123-131
-
-
Crawford, G.E.1
-
29
-
-
84894598129
-
Rapid and pervasive changes in genome-wide enhancer usage during mammalian development
-
Nord, A.S. et al. Rapid and pervasive changes in genome-wide enhancer usage during mammalian development. Cell 155, 1521-1531 (2013).
-
(2013)
Cell
, vol.155
, pp. 1521-1531
-
-
Nord, A.S.1
-
30
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
Bailey, T.L. et al. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37, W202-W208 (2009).
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W202-W208
-
-
Bailey, T.L.1
-
31
-
-
84865739425
-
Architecture of the human regulatory network derived from ENCODE data
-
Gerstein, M.B. et al. Architecture of the human regulatory network derived from ENCODE data. Nature 489, 91-100 (2012).
-
(2012)
Nature
, vol.489
, pp. 91-100
-
-
Gerstein, M.B.1
-
32
-
-
0034312317
-
Fra-1 replaces c-Fos-dependent functions in mice
-
Fleischmann, A. et al. Fra-1 replaces c-Fos-dependent functions in mice. Genes Dev. 14, 2695-2700 (2000).
-
(2000)
Genes Dev
, vol.14
, pp. 2695-2700
-
-
Fleischmann, A.1
-
33
-
-
0037083370
-
Tamalin, a PDZ domain-containing protein, links a protein complex formation of group 1 metabotropic glutamate receptors and the guanine nucleotide exchange factor cytohesins
-
Kitano, J. et al. Tamalin, a PDZ domain-containing protein, links a protein complex formation of group 1 metabotropic glutamate receptors and the guanine nucleotide exchange factor cytohesins. J. Neurosci. 22, 1280-1289 (2002).
-
(2002)
J. Neurosci
, vol.22
, pp. 1280-1289
-
-
Kitano, J.1
-
34
-
-
84880688018
-
Obligatory role for the immediate early gene NARP in critical period plasticity
-
Gu, Y. et al. Obligatory role for the immediate early gene NARP in critical period plasticity. Neuron 79, 335-346 (2013).
-
(2013)
Neuron
, vol.79
, pp. 335-346
-
-
Gu, Y.1
-
35
-
-
77956185019
-
Narp regulates homeostatic scaling of excitatory synapses on parvalbumin-expressing interneurons
-
Chang, M.C. et al. Narp regulates homeostatic scaling of excitatory synapses on parvalbumin-expressing interneurons. Nat. Neurosci. 13, 1090-1097 (2010).
-
(2011)
Nat. Neurosci
, vol.13
, pp. 1090-1097
-
-
Chang, M.C.1
-
36
-
-
0028941681
-
Igf1 gene disruption results in reduced brain size, CNS hypomyelination, and loss of hippocampal granule and striatal parvalbumin-containing neurons
-
Beck, K.D., Powell-Braxton, L., Widmer, H.R., Valverde, J. & Hefti, F. Igf1 gene disruption results in reduced brain size, CNS hypomyelination, and loss of hippocampal granule and striatal parvalbumin-containing neurons. Neuron 14, 717-730 (1995).
-
(1995)
Neuron
, vol.14
, pp. 717-730
-
-
Beck, K.D.1
Powell-Braxton, L.2
Widmer, H.R.3
Valverde, J.4
Hefti, F.5
-
37
-
-
77951863880
-
Nucleocytoplasmic translocation of HDAC9 regulates gene expression and dendritic growth in developing cortical neurons
-
Sugo, N. et al. Nucleocytoplasmic translocation of HDAC9 regulates gene expression and dendritic growth in developing cortical neurons. Eur. J. Neurosci. 31, 1521-1532 (2010).
-
(2011)
Eur. J. Neurosci
, vol.31
, pp. 1521-1532
-
-
Sugo, N.1
-
38
-
-
84876686460
-
From neural development to cognition: Unexpected roles for chromat
-
Ronan, J.L., Wu, W. & Crabtree, G.R. From neural development to cognition: unexpected roles for chromatin. Nat. Rev. Genet. 14, 347-359 (2013).
-
(2013)
Nat. Rev. Genet
, vol.14
, pp. 347-359
-
-
Ronan, J.L.1
Wu, W.2
Crabtree, G.R.3
-
39
-
-
33749590330
-
Brain-specific phosphorylation of MeCP2 regulates activity-dependent Bdnf transcription, dendritic growth, and spine maturation
-
Zhou, Z. et al. Brain-specific phosphorylation of MeCP2 regulates activity-dependent Bdnf transcription, dendritic growth, and spine maturation. Neuron 52, 255-269 (2006).
-
(2006)
Neuron
, vol.52
, pp. 255-269
-
-
Zhou, Z.1
-
40
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
41
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS
-
Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008).
-
(2008)
Genome Biol
, vol.9
, pp. R137
-
-
Zhang, Y.1
-
42
-
-
0028352113
-
Xenopus embryos regulate the nuclear localization of XMyoD
-
Rupp, R.A., Snider, L. & Weintraub, H. Xenopus embryos regulate the nuclear localization of XMyoD. Genes Dev. 8, 1311-1323 (1994).
-
(1994)
Genes Dev
, vol.8
, pp. 1311-1323
-
-
Rupp, R.A.1
Snider, L.2
Weintraub, H.3
-
43
-
-
34248559599
-
Gene splicing and mutagenesis by PCR-driven overlap extension
-
Heckman, K.L. & Pease, L.R. Gene splicing and mutagenesis by PCR-driven overlap extension. Nat. Protoc. 2, 924-932 (2007).
-
(2007)
Nat. Protoc
, vol.2
, pp. 924-932
-
-
Heckman, K.L.1
Pease, L.R.2
-
44
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
-
(2011)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
|