메뉴 건너뛰기




Volumn 17, Issue 10, 2014, Pages 1330-1339

Genome-wide identification and characterization of functional neuronal activity-dependent enhancers

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN BINDING PROTEIN; HISTONE H3; PROTEIN FOS; 2 AMINO 5 PHOSPHONOVALERIC ACID; AMINO ACID RECEPTOR BLOCKING AGENT; CREBBP PROTEIN, MOUSE; HISTONE DEMETHYLASE; KDM6B PROTEIN, MOUSE; MYOCYTE ENHANCER FACTOR 2; POTASSIUM CHLORIDE; PROTEIN V FOS; SODIUM CHANNEL BLOCKING AGENT; TETRODOTOXIN;

EID: 84917732422     PISSN: 10976256     EISSN: 15461726     Source Type: Journal    
DOI: 10.1038/nn.3808     Document Type: Article
Times cited : (191)

References (44)
  • 1
    • 52049127039 scopus 로고    scopus 로고
    • From synapse to nucleus: Calcium-dependent gene transcription in the control of synapse development and function
    • Greer, P.L. & Greenberg, M.E. From synapse to nucleus: calcium-dependent gene transcription in the control of synapse development and function. Neuron 59, 846-860 (2008).
    • (2008) Neuron , vol.59 , pp. 846-860
    • Greer, P.L.1    Greenberg, M.E.2
  • 2
    • 79958770852 scopus 로고    scopus 로고
    • Activity-regulated genes as mediators of neural circuit plasticity
    • Leslie, J.H. & Nedivi, E. Activity-regulated genes as mediators of neural circuit plasticity. Prog. Neurobiol. 94, 223-237 (2011).
    • (2011) Prog. Neurobiol , vol.94 , pp. 223-237
    • Leslie, J.H.1    Nedivi, E.2
  • 3
    • 27644551416 scopus 로고    scopus 로고
    • Critical period plasticity in local cortical circuits
    • Hensch, T.K. Critical period plasticity in local cortical circuits. Nat. Rev. Neurosci. 6, 877-888 (2005).
    • (2005) Nat. Rev. Neurosci , vol.6 , pp. 877-888
    • Hensch, T.K.1
  • 4
    • 58249118862 scopus 로고    scopus 로고
    • Transcription factors in long-term memory and synaptic plasticity
    • Alberini, C.M. Transcription factors in long-term memory and synaptic plasticity. Physiol. Rev. 89, 121-145 (2009).
    • (2009) Physiol. Rev , vol.89 , pp. 121-145
    • Alberini, C.M.1
  • 5
    • 79958038559 scopus 로고    scopus 로고
    • Epigenetic mechanisms in cognition
    • Day, J.J. & Sweatt, J.D. Epigenetic mechanisms in cognition. Neuron 70, 813-829 (2011).
    • (2011) Neuron , vol.70 , pp. 813-829
    • Day, J.J.1    Sweatt, J.D.2
  • 6
    • 79958766042 scopus 로고    scopus 로고
    • Mechanisms of specificity in neuronal activity-regulated gene transcription
    • Lyons, M.R. & West, A.E. Mechanisms of specificity in neuronal activity-regulated gene transcription. Prog. Neurobiol. 94, 259-295 (2011).
    • (2011) Prog. Neurobiol , vol.94 , pp. 259-295
    • Lyons, M.R.1    West, A.E.2
  • 7
    • 0033153155 scopus 로고    scopus 로고
    • Synaptic clustering of AMPA receptors by the extracellular immediate-early gene product Narp
    • OBrien, R.J. et al. Synaptic clustering of AMPA receptors by the extracellular immediate-early gene product Narp. Neuron 23, 309-323 (1999).
    • (1999) Neuron , vol.23 , pp. 309-323
    • OBrien, R.J.1
  • 8
    • 52049117013 scopus 로고    scopus 로고
    • A biological function for the neuronal activity-dependent component of Bdnf transcription in the development of cortical inhibition
    • Hong, E.J., McCord, A.E. & Greenberg, M.E. A biological function for the neuronal activity-dependent component of Bdnf transcription in the development of cortical inhibition. Neuron 60, 610-624 (2008).
    • (2008) Neuron , vol.60 , pp. 610-624
    • Hong, E.J.1    McCord, A.E.2    Greenberg, M.E.3
  • 9
    • 52049102989 scopus 로고    scopus 로고
    • Activity-dependent regulation of inhibitory synapse development by Npas4
    • Lin, Y. et al. Activity-dependent regulation of inhibitory synapse development by Npas4. Nature 455, 1198-1204 (2008).
    • (2008) Nature , vol.455 , pp. 1198-1204
    • Lin, Y.1
  • 10
    • 84872593582 scopus 로고    scopus 로고
    • Activity-dependent neuronal signalling and autism spectrum disorder
    • Ebert, D.H. & Greenberg, M.E. Activity-dependent neuronal signalling and autism spectrum disorder. Nature 493, 327-337 (2013).
    • (2013) Nature , vol.493 , pp. 327-337
    • Ebert, D.H.1    Greenberg, M.E.2
  • 11
    • 0021213870 scopus 로고
    • Stimulation of 3T3 cells induces transcription of the c-fos proto-oncogene
    • Greenberg, M.E. & Ziff, E.B. Stimulation of 3T3 cells induces transcription of the c-fos proto-oncogene. Nature 311, 433-438 (1984).
    • (1984) Nature , vol.311 , pp. 433-438
    • Greenberg, M.E.1    Ziff, E.B.2
  • 12
    • 0023034795 scopus 로고
    • Stimulation of neuronal acetylcholine receptors induces rapid gene transcription
    • Greenberg, M.E., Ziff, E.B. & Greene, L.A. Stimulation of neuronal acetylcholine receptors induces rapid gene transcription. Science 234, 80-83 (1986).
    • (1986) Science , vol.234 , pp. 80-83
    • Greenberg, M.E.1    Ziff, E.B.2    Greene, L.A.3
  • 13
    • 0242691046 scopus 로고    scopus 로고
    • AP-1: A double-edged sword in tumorigenesis
    • Eferl, R. & Wagner, E.F. AP-1: a double-edged sword in tumorigenesis. Nat. Rev. Cancer 3, 859-868 (2003).
    • (2003) Nat. Rev. Cancer , vol.3 , pp. 859-868
    • Eferl, R.1    Wagner, E.F.2
  • 14
    • 0019811465 scopus 로고
    • Expression of a β-globin gene is enhanced by remote SV40 DNA sequences
    • Banerji, J., Rusconi, S. & Schaffner, W. Expression of a β-globin gene is enhanced by remote SV40 DNA sequences. Cell 27, 299-308 (1981).
    • (1981) Cell , vol.27 , pp. 299-308
    • Banerji, J.1    Rusconi, S.2    Schaffner, W.3
  • 15
    • 77956495708 scopus 로고    scopus 로고
    • Transcriptional enhancers in animal development and evolution
    • Levine, M. Transcriptional enhancers in animal development and evolution. Curr. Biol. 20, R754-R763 (2010).
    • (2011) Curr. Biol , vol.20 , pp. R754-R763
    • Levine, M.1
  • 16
    • 33847334699 scopus 로고    scopus 로고
    • Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
    • Heintzman, N.D. et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 39, 311-318 (2007).
    • (2007) Nat. Genet , vol.39 , pp. 311-318
    • Heintzman, N.D.1
  • 17
    • 60149091656 scopus 로고    scopus 로고
    • ChIP-seq accurately predicts tissue-specific activity of enhancers
    • Visel, A. et al. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457, 854-858 (2009).
    • (2009) Nature , vol.457 , pp. 854-858
    • Visel, A.1
  • 18
    • 77952367798 scopus 로고    scopus 로고
    • Widespread transcription at neuronal activity-regulated enhancers
    • Kim, T.K. et al. Widespread transcription at neuronal activity-regulated enhancers. Nature 465, 182-187 (2010).
    • (2011) Nature , vol.465 , pp. 182-187
    • Kim, T.K.1
  • 19
    • 84865822182 scopus 로고    scopus 로고
    • Systematic localization of common disease-Associated variation in regulatory DNA
    • Maurano, M.T. et al. Systematic localization of common disease-Associated variation in regulatory DNA. Science 337, 1190-1195 (2012).
    • (2012) Science , vol.337 , pp. 1190-1195
    • Maurano, M.T.1
  • 20
    • 84874118170 scopus 로고    scopus 로고
    • A high-resolution enhancer atlas of the developing telencephalon
    • Visel, A. et al. A high-resolution enhancer atlas of the developing telencephalon. Cell 152, 895-908 (2013).
    • (2013) Cell , vol.152 , pp. 895-908
    • Visel, A.1
  • 22
    • 78650758676 scopus 로고    scopus 로고
    • Histone H3K27ac separates active from poised enhancers and predicts developmental state
    • Creyghton, M.P. et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl. Acad. Sci. USA 107, 21931-21936 (2010).
    • (2011) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 21931-21936
    • Creyghton, M.P.1
  • 23
    • 79951516056 scopus 로고    scopus 로고
    • A unique chromatin signature uncovers early developmental enhancers in humans
    • Rada-Iglesias, A. et al. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470, 279-283 (2011).
    • (2011) Nature , vol.470 , pp. 279-283
    • Rada-Iglesias, A.1
  • 24
    • 84876836223 scopus 로고    scopus 로고
    • Modification of enhancer chromatin: What, how, and why?
    • Calo, E. & Wysocka, J. Modification of enhancer chromatin: what, how, and why? Mol. Cell 49, 825-837 (2013).
    • (2013) Mol. Cell , vol.49 , pp. 825-837
    • Calo, E.1    Wysocka, J.2
  • 25
    • 0029156234 scopus 로고
    • Human neuronal pentraxin II (NPTX2): Conservation, genomic structure, and chromosomal localization
    • Hsu, Y.C. & Perin, M.S. Human neuronal pentraxin II (NPTX2): conservation, genomic structure, and chromosomal localization. Genomics 28, 220-227 (1995).
    • (1995) Genomics , vol.28 , pp. 220-227
    • Hsu, Y.C.1    Perin, M.S.2
  • 26
    • 84864462544 scopus 로고    scopus 로고
    • A map of the cis-regulatory sequences in the mouse genome
    • Shen, Y. et al. A map of the cis-regulatory sequences in the mouse genome. Nature 488, 116-120 (2012).
    • (2012) Nature , vol.488 , pp. 116-120
    • Shen, Y.1
  • 27
    • 84865121188 scopus 로고    scopus 로고
    • An encyclopedia of mouse DNA elements (Mouse ENCODE
    • Mouse ENCODE Consortium.et al
    • Mouse ENCODE Consortium. et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol. 13, 418 (2012).
    • (2012) Genome Biol , vol.13 , pp. 418
  • 28
    • 30044449116 scopus 로고    scopus 로고
    • Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS
    • Crawford, G.E. et al. Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS). Genome Res. 16, 123-131 (2006).
    • (2006) Genome Res , vol.16 , pp. 123-131
    • Crawford, G.E.1
  • 29
    • 84894598129 scopus 로고    scopus 로고
    • Rapid and pervasive changes in genome-wide enhancer usage during mammalian development
    • Nord, A.S. et al. Rapid and pervasive changes in genome-wide enhancer usage during mammalian development. Cell 155, 1521-1531 (2013).
    • (2013) Cell , vol.155 , pp. 1521-1531
    • Nord, A.S.1
  • 30
    • 67849122320 scopus 로고    scopus 로고
    • MEME SUITE: Tools for motif discovery and searching
    • Bailey, T.L. et al. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37, W202-W208 (2009).
    • (2009) Nucleic Acids Res , vol.37 , pp. W202-W208
    • Bailey, T.L.1
  • 31
    • 84865739425 scopus 로고    scopus 로고
    • Architecture of the human regulatory network derived from ENCODE data
    • Gerstein, M.B. et al. Architecture of the human regulatory network derived from ENCODE data. Nature 489, 91-100 (2012).
    • (2012) Nature , vol.489 , pp. 91-100
    • Gerstein, M.B.1
  • 32
    • 0034312317 scopus 로고    scopus 로고
    • Fra-1 replaces c-Fos-dependent functions in mice
    • Fleischmann, A. et al. Fra-1 replaces c-Fos-dependent functions in mice. Genes Dev. 14, 2695-2700 (2000).
    • (2000) Genes Dev , vol.14 , pp. 2695-2700
    • Fleischmann, A.1
  • 33
    • 0037083370 scopus 로고    scopus 로고
    • Tamalin, a PDZ domain-containing protein, links a protein complex formation of group 1 metabotropic glutamate receptors and the guanine nucleotide exchange factor cytohesins
    • Kitano, J. et al. Tamalin, a PDZ domain-containing protein, links a protein complex formation of group 1 metabotropic glutamate receptors and the guanine nucleotide exchange factor cytohesins. J. Neurosci. 22, 1280-1289 (2002).
    • (2002) J. Neurosci , vol.22 , pp. 1280-1289
    • Kitano, J.1
  • 34
    • 84880688018 scopus 로고    scopus 로고
    • Obligatory role for the immediate early gene NARP in critical period plasticity
    • Gu, Y. et al. Obligatory role for the immediate early gene NARP in critical period plasticity. Neuron 79, 335-346 (2013).
    • (2013) Neuron , vol.79 , pp. 335-346
    • Gu, Y.1
  • 35
    • 77956185019 scopus 로고    scopus 로고
    • Narp regulates homeostatic scaling of excitatory synapses on parvalbumin-expressing interneurons
    • Chang, M.C. et al. Narp regulates homeostatic scaling of excitatory synapses on parvalbumin-expressing interneurons. Nat. Neurosci. 13, 1090-1097 (2010).
    • (2011) Nat. Neurosci , vol.13 , pp. 1090-1097
    • Chang, M.C.1
  • 36
    • 0028941681 scopus 로고
    • Igf1 gene disruption results in reduced brain size, CNS hypomyelination, and loss of hippocampal granule and striatal parvalbumin-containing neurons
    • Beck, K.D., Powell-Braxton, L., Widmer, H.R., Valverde, J. & Hefti, F. Igf1 gene disruption results in reduced brain size, CNS hypomyelination, and loss of hippocampal granule and striatal parvalbumin-containing neurons. Neuron 14, 717-730 (1995).
    • (1995) Neuron , vol.14 , pp. 717-730
    • Beck, K.D.1    Powell-Braxton, L.2    Widmer, H.R.3    Valverde, J.4    Hefti, F.5
  • 37
    • 77951863880 scopus 로고    scopus 로고
    • Nucleocytoplasmic translocation of HDAC9 regulates gene expression and dendritic growth in developing cortical neurons
    • Sugo, N. et al. Nucleocytoplasmic translocation of HDAC9 regulates gene expression and dendritic growth in developing cortical neurons. Eur. J. Neurosci. 31, 1521-1532 (2010).
    • (2011) Eur. J. Neurosci , vol.31 , pp. 1521-1532
    • Sugo, N.1
  • 38
    • 84876686460 scopus 로고    scopus 로고
    • From neural development to cognition: Unexpected roles for chromat
    • Ronan, J.L., Wu, W. & Crabtree, G.R. From neural development to cognition: unexpected roles for chromatin. Nat. Rev. Genet. 14, 347-359 (2013).
    • (2013) Nat. Rev. Genet , vol.14 , pp. 347-359
    • Ronan, J.L.1    Wu, W.2    Crabtree, G.R.3
  • 39
    • 33749590330 scopus 로고    scopus 로고
    • Brain-specific phosphorylation of MeCP2 regulates activity-dependent Bdnf transcription, dendritic growth, and spine maturation
    • Zhou, Z. et al. Brain-specific phosphorylation of MeCP2 regulates activity-dependent Bdnf transcription, dendritic growth, and spine maturation. Neuron 52, 255-269 (2006).
    • (2006) Neuron , vol.52 , pp. 255-269
    • Zhou, Z.1
  • 40
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 41
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq (MACS
    • Zhang, Y. et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9, R137 (2008).
    • (2008) Genome Biol , vol.9 , pp. R137
    • Zhang, Y.1
  • 42
    • 0028352113 scopus 로고
    • Xenopus embryos regulate the nuclear localization of XMyoD
    • Rupp, R.A., Snider, L. & Weintraub, H. Xenopus embryos regulate the nuclear localization of XMyoD. Genes Dev. 8, 1311-1323 (1994).
    • (1994) Genes Dev , vol.8 , pp. 1311-1323
    • Rupp, R.A.1    Snider, L.2    Weintraub, H.3
  • 43
    • 34248559599 scopus 로고    scopus 로고
    • Gene splicing and mutagenesis by PCR-driven overlap extension
    • Heckman, K.L. & Pease, L.R. Gene splicing and mutagenesis by PCR-driven overlap extension. Nat. Protoc. 2, 924-932 (2007).
    • (2007) Nat. Protoc , vol.2 , pp. 924-932
    • Heckman, K.L.1    Pease, L.R.2
  • 44
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
    • (2011) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.