-
1
-
-
33745463739
-
A comprehensive map of the toll-like receptor signaling network
-
K. Oda, H. Kitano, A comprehensive map of the toll-like receptor signaling network. Mol. Syst. Biol. 2, 2006.0015 (2006).
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 2006.0015
-
-
Oda, K.1
Kitano, H.2
-
2
-
-
0028237775
-
Macrophage differentiation marker MyD88 is a member of the Toll/IL-1 receptor family
-
D. Hultmark, Macrophage differentiation marker MyD88 is a member of the Toll/IL-1 receptor family. Biochem. Biophys. Res. Commun. 199, 144-146 (1994).
-
(1994)
Biochem. Biophys. Res. Commun.
, vol.199
, pp. 144-146
-
-
Hultmark, D.1
-
3
-
-
0031423761
-
MyD88: An adapter that recruits IRAK to the IL-1 receptor complex
-
H. Wesche, W. J. Henzel, W. Shillinglaw, S. Li, Z. Cao, MyD88: An adapter that recruits IRAK to the IL-1 receptor complex. Immunity 7, 837-847 (1997).
-
(1997)
Immunity
, vol.7
, pp. 837-847
-
-
Wesche, H.1
Henzel, W.J.2
Shillinglaw, W.3
Li, S.4
Cao, Z.5
-
4
-
-
0043176281
-
Role of adaptor TRIF in the MyD88-independent Toll-like receptor signaling pathway
-
M. Yamamoto, S. Sato, H. Hemmi, K. Hoshino, T. Kaisho, H. Sanjo, O. Takeuchi, M. Sugiyama, M. Okabe, K. Takeda, S. Akira, Role of adaptor TRIF in the MyD88-independent Toll-like receptor signaling pathway. Science 301, 640-643 (2003).
-
(2003)
Science
, vol.301
, pp. 640-643
-
-
Yamamoto, M.1
Sato, S.2
Hemmi, H.3
Hoshino, K.4
Kaisho, T.5
Sanjo, H.6
Takeuchi, O.7
Sugiyama, M.8
Okabe, M.9
Takeda, K.10
Akira, S.11
-
5
-
-
4344670936
-
Bow ties, metabolism and disease
-
M. Csete, J. Doyle, Bow ties, metabolism and disease. Trends Biotechnol. 22, 446-450 (2004).
-
(2004)
Trends Biotechnol.
, vol.22
, pp. 446-450
-
-
Csete, M.1
Doyle, J.2
-
6
-
-
0030831210
-
A human homologue of the Drosophila Toll protein signals activation of adaptive immunity
-
R. Medzhitov, P. Preston-Hurlburt, C. A. Janeway Jr., A human homologue of the Drosophila Toll protein signals activation of adaptive immunity. Nature 388, 394-397 (1997).
-
(1997)
Nature
, vol.388
, pp. 394-397
-
-
Medzhitov, R.1
Preston-Hurlburt, P.2
Janeway, C.A.3
-
7
-
-
77951260924
-
The role of pattern-recognition receptors in innate immunity: Update on Toll-like receptors
-
T. Kawai, S. Akira, The role of pattern-recognition receptors in innate immunity: Update on Toll-like receptors. Nat. Immunol. 11, 373-384 (2010).
-
(2010)
Nat. Immunol.
, vol.11
, pp. 373-384
-
-
Kawai, T.1
Akira, S.2
-
8
-
-
0033532629
-
MD-2, a molecule that confers lipopolysaccharide responsiveness on Toll-like receptor 4
-
R. Shimazu, S. Akashi, H. Ogata, Y. Nagai, K. Fukudome, K. Miyake, M. Kimoto, MD-2, a molecule that confers lipopolysaccharide responsiveness on Toll-like receptor 4. J. Exp. Med. 189, 1777-1782 (1999).
-
(1999)
J. Exp. Med.
, vol.189
, pp. 1777-1782
-
-
Shimazu, R.1
Akashi, S.2
Ogata, H.3
Nagai, Y.4
Fukudome, K.5
Miyake, K.6
Kimoto, M.7
-
9
-
-
40949134086
-
TRAM couples endocytosis of Toll-like receptor 4 to the induction of interferon-β
-
J. C. Kagan, T. Su, T. Horng, A. Chow, S. Akira, R. Medzhitov, TRAM couples endocytosis of Toll-like receptor 4 to the induction of interferon-β. Nat. Immunol. 9, 361-368 (2008).
-
(2008)
Nat. Immunol.
, vol.9
, pp. 361-368
-
-
Kagan, J.C.1
Su, T.2
Horng, T.3
Chow, A.4
Akira, S.5
Medzhitov, R.6
-
10
-
-
24944586285
-
Achieving stability of lipopolysaccharide-induced NF-κB activation
-
M. W. Covert, T. H. Leung, J. E. Gaston, D. Baltimore, Achieving stability of lipopolysaccharide-induced NF-κB activation. Science 309, 1854-1857 (2005).
-
(2005)
Science
, vol.309
, pp. 1854-1857
-
-
Covert, M.W.1
Leung, T.H.2
Gaston, J.E.3
Baltimore, D.4
-
11
-
-
80054930783
-
Imaging the coordination of multiple signalling activities in living cells
-
C. M. Welch, H. Elliott, G. Danuser, K. M. Hahn, Imaging the coordination of multiple signalling activities in living cells. Nat. Rev. Mol. Cell Biol. 12, 749-756 (2011).
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 749-756
-
-
Welch, C.M.1
Elliott, H.2
Danuser, G.3
Hahn, K.M.4
-
12
-
-
78349308548
-
Understanding the temporal codes of intra-cellular signals
-
M. Behar, A. Hoffmann, Understanding the temporal codes of intra-cellular signals. Curr. Opin. Genet. Dev. 20, 684-693 (2010).
-
(2010)
Curr. Opin. Genet. Dev.
, vol.20
, pp. 684-693
-
-
Behar, M.1
Hoffmann, A.2
-
13
-
-
24944489952
-
Stimulus specificity of gene expression programs determined by temporal control of IKK activity
-
S. L. Werner, D. Barken, A. Hoffmann, Stimulus specificity of gene expression programs determined by temporal control of IKK activity. Science 309, 1857-1861 (2005).
-
(2005)
Science
, vol.309
, pp. 1857-1861
-
-
Werner, S.L.1
Barken, D.2
Hoffmann, A.3
-
14
-
-
77951187551
-
A noisy paracrine signal determines the cellular NF-κB response to lipopolysaccharide
-
T. K. Lee, E. M. Denny, J. C. Sanghvi, J. E. Gaston, N. D. Maynard, J. J. Hughey, M. W. Covert, A noisy paracrine signal determines the cellular NF-κB response to lipopolysaccharide. Sci. Signal. 2, ra65 (2009).
-
(2009)
Sci. Signal.
, vol.2
, pp. ra65
-
-
Lee, T.K.1
Denny, E.M.2
Sanghvi, J.C.3
Gaston, J.E.4
Maynard, N.D.5
Hughey, J.J.6
Covert, M.W.7
-
15
-
-
36049033394
-
Signaling to NF-κB by Toll-like receptors
-
T. Kawai, S. Akira, Signaling to NF-κB by Toll-like receptors. Trends Mol. Med. 13, 460-469 (2007).
-
(2007)
Trends Mol. Med.
, vol.13
, pp. 460-469
-
-
Kawai, T.1
Akira, S.2
-
16
-
-
84907560483
-
Network dynamics determine the autocrine and paracrine signaling functions of TNF
-
A. B. Caldwell, Z. Cheng, J. D. Vargas, H. A. Birnbaum, A. Hoffmann, Network dynamics determine the autocrine and paracrine signaling functions of TNF. Genes Dev. 28, 2120-2133 (2014).
-
(2014)
Genes Dev.
, vol.28
, pp. 2120-2133
-
-
Caldwell, A.B.1
Cheng, Z.2
Vargas, J.D.3
Birnbaum, H.A.4
Hoffmann, A.5
-
17
-
-
0033166472
-
Unresponsiveness of MyD88-deficient mice to endotoxin
-
T. Kawai, O. Adachi, T. Ogawa, K. Takeda, S. Akira, Unresponsiveness of MyD88-deficient mice to endotoxin. Immunity 11, 115-122 (1999).
-
(1999)
Immunity
, vol.11
, pp. 115-122
-
-
Kawai, T.1
Adachi, O.2
Ogawa, T.3
Takeda, K.4
Akira, S.5
-
18
-
-
0035889228
-
Lipopolysaccharide stimulates the MyD88-independent pathway and results in activation of IFN-regulatory factor 3 and the expression of a subset of lipopolysaccharide-inducible genes
-
T. Kawai, O. Takeuchi, T. Fujita, J.-i. Inoue, P. F. Muhlradt, S. Sato, K. Hoshino, S. Akira, Lipopolysaccharide stimulates the MyD88-independent pathway and results in activation of IFN-regulatory factor 3 and the expression of a subset of lipopolysaccharide-inducible genes. J. Immunol. 167, 5887-5894 (2001).
-
(2001)
J. Immunol.
, vol.167
, pp. 5887-5894
-
-
Kawai, T.1
Takeuchi, O.2
Fujita, T.3
Inoue, J.-I.4
Muhlradt, P.F.5
Sato, S.6
Hoshino, K.7
Akira, S.8
-
19
-
-
77952474987
-
Cellular heterogeneity: Do differences make a difference?
-
S. J. Altschuler, L. F. Wu, Cellular heterogeneity: Do differences make a difference? Cell 141, 559-563 (2010).
-
(2010)
Cell
, vol.141
, pp. 559-563
-
-
Altschuler, S.J.1
Wu, L.F.2
-
20
-
-
78951470515
-
Origins of regulated cell-to-cell variability
-
B. Snijder, L. Pelkmans, Origins of regulated cell-to-cell variability. Nat. Rev. Mol. Cell Biol. 12, 119-125 (2011).
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 119-125
-
-
Snijder, B.1
Pelkmans, L.2
-
21
-
-
80054841161
-
Information transduction capacity of noisy biochemical signaling networks
-
R. Cheong, A. Rhee, C. J. Wang, I. Nemenman, A. Levchenko, Information transduction capacity of noisy biochemical signaling networks. Science 334, 354-358 (2011).
-
(2011)
Science
, vol.334
, pp. 354-358
-
-
Cheong, R.1
Rhee, A.2
Wang, C.J.3
Nemenman, I.4
Levchenko, A.5
-
22
-
-
84918571678
-
Accurate information transmission through dynamic biochemical signaling networks
-
J. Selimkhanov, B. Taylor, J. Yao, A. Pilko, J. Albeck, A. Hoffmann, L. S. Tsimring, R. Wollman, Accurate information transmission through dynamic biochemical signaling networks. Science 346, 1370-1373 (2014).
-
(2014)
Science
, vol.346
, pp. 1370-1373
-
-
Selimkhanov, J.1
Taylor, B.2
Yao, J.3
Pilko, A.4
Albeck, J.5
Hoffmann, A.6
Tsimring, L.S.7
Wollman, R.8
-
23
-
-
84874771424
-
Characterizing the relationship between steady state and response using analytical expressions for the steady states of mass action models
-
P. M. Loriaux, G. Tesler, A. Hoffmann, Characterizing the relationship between steady state and response using analytical expressions for the steady states of mass action models. PLOS Comput. Biol. 9 (2013).
-
(2013)
PLOS Comput. Biol.
, vol.9
-
-
Loriaux, P.M.1
Tesler, G.2
Hoffmann, A.3
-
24
-
-
38849139572
-
Single TNFα trimers mediating NF-κB activation: Stochastic robustness of NF-κB signaling
-
T. Lipniacki, K. Puszynski, P. Paszek, A. R. Brasier, M. Kimmel, Single TNFα trimers mediating NF-κB activation: Stochastic robustness of NF-κB signaling. BMC Bioinformatics 8, 376 (2007).
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 376
-
-
Lipniacki, T.1
Puszynski, K.2
Paszek, P.3
Brasier, A.R.4
Kimmel, M.5
-
25
-
-
77954920254
-
Population robustness arising from cellular heterogeneity
-
P. Paszek, S. Ryan, L. Ashall, K. Sillitoe, C. V. Harper, D. G. Spiller, D. A. Rand, M. R. White, Population robustness arising from cellular heterogeneity. Proc. Natl. Acad. Sci. U.S.A. 107, 11644-11649 (2010).
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 11644-11649
-
-
Paszek, P.1
Ryan, S.2
Ashall, L.3
Sillitoe, K.4
Harper, C.V.5
Spiller, D.G.6
Rand, D.A.7
White, M.R.8
-
26
-
-
80054829921
-
Sources of cell-to-cell variability in canonical nuclear factor-κB (NF-κB) signaling pathway inferred from single cell dynamic images
-
M. K. Kalita, K. Sargsyan, B. Tian, A. Paulucci-Holthauzen, H. N. Najm, B. J. Debusschere, A. R. Brasier, Sources of cell-to-cell variability in canonical nuclear factor-κB (NF-κB) signaling pathway inferred from single cell dynamic images. J. Biol. Chem. 286, 37741-37757 (2011).
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 37741-37757
-
-
Kalita, M.K.1
Sargsyan, K.2
Tian, B.3
Paulucci-Holthauzen, A.4
Najm, H.N.5
Debusschere, B.J.6
Brasier, A.R.7
-
27
-
-
84858728161
-
Lessons from mathematically modeling the NF-κB pathway
-
S. Basak, M. Behar, A. Hoffmann, Lessons from mathematically modeling the NF-κB pathway. Immunol. Rev. 246, 221-238 (2012).
-
(2012)
Immunol. Rev.
, vol.246
, pp. 221-238
-
-
Basak, S.1
Behar, M.2
Hoffmann, A.3
-
28
-
-
0037119587
-
Stochastic gene expression in a single cell
-
M. B. Elowitz, A. J. Levine, E. D. Siggia, P. S. Swain, Stochastic gene expression in a single cell. Science 297, 1183-1186 (2002).
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
29
-
-
84921842476
-
Single-cell variation leads to population invariance in NF-κB signaling dynamics
-
J. J. Hughey, M. V. Gutschow, B. T. Bajar, M. W. Covert, Single-cell variation leads to population invariance in NF-κB signaling dynamics. Mol. Biol. Cell 26, 583-590 (2015).
-
(2015)
Mol. Biol. Cell
, vol.26
, pp. 583-590
-
-
Hughey, J.J.1
Gutschow, M.V.2
Bajar, B.T.3
Covert, M.W.4
-
30
-
-
77958487596
-
The Rab11a GTPase controls Toll-like receptor 4-induced activation of interferon regulatory factor-3 on phagosomes
-
H. Husebye, M. H. Aune, J. Stenvik, E. Samstad, F. Skjeldal, O. Halaas, N. J. Nilsen, H. Stenmark, E. Latz, E. Lien, T. E. Mollnes, O. Bakke, T. Espevik, The Rab11a GTPase controls Toll-like receptor 4-induced activation of interferon regulatory factor-3 on phagosomes. Immunity 33, 583-596 (2010).
-
(2010)
Immunity
, vol.33
, pp. 583-596
-
-
Husebye, H.1
Aune, M.H.2
Stenvik, J.3
Samstad, E.4
Skjeldal, F.5
Halaas, O.6
Nilsen, N.J.7
Stenmark, H.8
Latz, E.9
Lien, E.10
Mollnes, T.E.11
Bakke, O.12
Espevik, T.13
-
31
-
-
39149137198
-
Roles for LPS-dependent interaction and relocation of TLR4 and TRAM in TRIF-signaling
-
N. Tanimura, S. Saitoh, F. Matsumoto, S. Akashi-Takamura, K. Miyake, Roles for LPS-dependent interaction and relocation of TLR4 and TRAM in TRIF-signaling. Biochem. Biophys. Res. Commun. 368, 94-99 (2008).
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.368
, pp. 94-99
-
-
Tanimura, N.1
Saitoh, S.2
Matsumoto, F.3
Akashi-Takamura, S.4
Miyake, K.5
-
32
-
-
77953714711
-
Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signaling
-
S.-C. Lin, Y.-C. Lo, H. Wu, Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signaling. Nature 465, 885-890 (2010).
-
(2010)
Nature
, vol.465
, pp. 885-890
-
-
Lin, S.-C.1
Lo, Y.-C.2
Wu, H.3
-
33
-
-
33747388013
-
IκBε provides negative feedback to control NF-κB oscillations, signaling dynamics, and inflammatory gene expression
-
J. D. Kearns, S. Basak, S. L. Werner, C. S. Huang, A. Hoffmann, IκBε provides negative feedback to control NF-κB oscillations, signaling dynamics, and inflammatory gene expression. J. Cell Biol. 173, 659-664 (2006).
-
(2006)
J. Cell Biol.
, vol.173
, pp. 659-664
-
-
Kearns, J.D.1
Basak, S.2
Werner, S.L.3
Huang, C.S.4
Hoffmann, A.5
-
34
-
-
48749085156
-
Encoding NF-κB temporal control in response to TNF: Distinct roles for the negative regulators IκBα and A20
-
S. L. Werner, J. D. Kearns, V. Zadorozhnaya, C. Lynch, E. O'Dea, M. P. Boldin, A. Ma, D. Baltimore, A. Hoffmann, Encoding NF-κB temporal control in response to TNF: Distinct roles for the negative regulators IκBα and A20. Genes Dev. 22, 2093-2101 (2008).
-
(2008)
Genes Dev.
, vol.22
, pp. 2093-2101
-
-
Werner, S.L.1
Kearns, J.D.2
Zadorozhnaya, V.3
Lynch, C.4
O'Dea, E.5
Boldin, M.P.6
Ma, A.7
Baltimore, D.8
Hoffmann, A.9
-
35
-
-
0037044575
-
The IκB-NF-κB signaling module: Temporal control and selective gene activation
-
A. Hoffmann, A. Levchenko, M. L. Scott, D. Baltimore, The IκB-NF-κB signaling module: Temporal control and selective gene activation. Science 298, 1241-1245 (2002).
-
(2002)
Science
, vol.298
, pp. 1241-1245
-
-
Hoffmann, A.1
Levchenko, A.2
Scott, M.L.3
Baltimore, D.4
-
36
-
-
77954541844
-
Single-cell NF-κB dynamics reveal digital activation and analogue information processing
-
S. Tay, J. J. Hughey, T. K. Lee, T. Lipniacki, S. R. Quake, M. W. Covert, Single-cell NF-κB dynamics reveal digital activation and analogue information processing. Nature 466, 267-271 (2010).
-
(2010)
Nature
, vol.466
, pp. 267-271
-
-
Tay, S.1
Hughey, J.J.2
Lee, T.K.3
Lipniacki, T.4
Quake, S.R.5
Covert, M.W.6
-
37
-
-
84861732291
-
Structural insights into the assembly of large oligomeric signalosomes in the Toll-like receptor-interleukin-1 receptor superfamily
-
R. Ferrao, J. X. Li, E. Bergamin, H. Wu, Structural insights into the assembly of large oligomeric signalosomes in the Toll-like receptor-interleukin-1 receptor superfamily. Sci. Signal. 5 (2012).
-
(2012)
Sci. Signal.
, vol.5
-
-
Ferrao, R.1
Li, J.X.2
Bergamin, E.3
Wu, H.4
-
38
-
-
33644508366
-
Endocytic pathways regulate Toll-like receptor 4 signaling and link innate and adaptive immunity
-
H. Husebye, Ø. Halaas, H. Stenmark, G. Tunheim, Ø. Sandanger, B. Bogen, A. Brech, E. Latz, T. Espevik, Endocytic pathways regulate Toll-like receptor 4 signaling and link innate and adaptive immunity. EMBO J. 25, 683-692 (2006).
-
(2006)
EMBO J.
, vol.25
, pp. 683-692
-
-
Husebye, H.1
Halaas, Ø.2
Stenmark, H.3
Tunheim, G.4
Sandanger, Ø.5
Bogen, B.6
Brech, A.7
Latz, E.8
Espevik, T.9
-
39
-
-
77249160271
-
Localisation and trafficking of Toll-like receptors: An important mode of regulation
-
A. F. McGettrick, L. A. O'Neill, Localisation and trafficking of Toll-like receptors: An important mode of regulation. Curr. Opin. Immunol. 22, 20-27 (2010).
-
(2010)
Curr. Opin. Immunol.
, vol.22
, pp. 20-27
-
-
McGettrick, A.F.1
O'Neill, L.A.2
-
40
-
-
26644447615
-
Phagosome maturation proceeds independently of stimulation of Toll-like receptors 2 and 4
-
R. M. Yates, D. G. Russell, Phagosome maturation proceeds independently of stimulation of Toll-like receptors 2 and 4. Immunity 23, 409-417 (2005).
-
(2005)
Immunity
, vol.23
, pp. 409-417
-
-
Yates, R.M.1
Russell, D.G.2
-
41
-
-
84903185013
-
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation
-
A. K. Shalek, R. Satija, J. Shuga, J. J. Trombetta, D. Gennert, D. Lu, P. Chen, R. S. Gertner, J. T. Gaublomme, N. Yosef, S. Schwartz, B. Fowler, S. Weaver, J. Wang, X. Wang, R. Ding, R. Raychowdhury, N. Friedman, N. Hacohen, H. Park, A. P. May, A. Regev, Single-cell RNA-seq reveals dynamic paracrine control of cellular variation. Nature 510, 363-369 (2014).
-
(2014)
Nature
, vol.510
, pp. 363-369
-
-
Shalek, A.K.1
Satija, R.2
Shuga, J.3
Trombetta, J.J.4
Gennert, D.5
Lu, D.6
Chen, P.7
Gertner, R.S.8
Gaublomme, J.T.9
Yosef, N.10
Schwartz, S.11
Fowler, B.12
Weaver, S.13
Wang, J.14
Wang, X.15
Ding, R.16
Raychowdhury, R.17
Friedman, N.18
Hacohen, N.19
Park, H.20
May, A.P.21
Regev, A.22
more..
-
42
-
-
84937566091
-
Computational models of the NF-KB signalling pathway
-
R. A. Williams, J. Timmis, E. E. Qwarnstrom, Computational models of the NF-KB signalling pathway. Computation 2, 131-158 (2014).
-
(2014)
Computation
, vol.2
, pp. 131-158
-
-
Williams, R.A.1
Timmis, J.2
Qwarnstrom, E.E.3
-
43
-
-
66249136447
-
Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis
-
S. L. Spencer, S. Gaudet, J. G. Albeck, J. M. Burke, P. K. Sorger, Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis. Nature 459, 428-432 (2009).
-
(2009)
Nature
, vol.459
, pp. 428-432
-
-
Spencer, S.L.1
Gaudet, S.2
Albeck, J.G.3
Burke, J.M.4
Sorger, P.K.5
-
44
-
-
58549110252
-
Stochastic modelling for quantitative description of heterogeneous biological systems
-
D. J. Wilkinson, Stochastic modelling for quantitative description of heterogeneous biological systems. Nat. Rev. Genet. 10, 122-133 (2009).
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 122-133
-
-
Wilkinson, D.J.1
-
45
-
-
77955102352
-
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Y. Taniguchi, P. J. Choi, G. W. Li, H. Chen, M. Babu, J. Hearn, A. Emili, X. S. Xie, Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329, 533-538 (2010).
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
Hearn, J.6
Emili, A.7
Xie, X.S.8
-
46
-
-
84896404575
-
Fold change of nuclear NF-κB determines TNF-induced transcription in single cells
-
R. E. Lee, S. R. Walker, K. Savery, D. A. Frank, S. Gaudet, Fold change of nuclear NF-κB determines TNF-induced transcription in single cells. Mol. Cell 53, 867-879 (2014).
-
(2014)
Mol. Cell
, vol.53
, pp. 867-879
-
-
Lee, R.E.1
Walker, S.R.2
Savery, K.3
Frank, D.A.4
Gaudet, S.5
-
47
-
-
84879531246
-
Dual delayed feedback provides sensitivity and robustness to the NF-κB signaling module
-
D. M. Longo, J. Selimkhanov, J. D. Kearns, J. Hasty, A. Hoffmann, L. S. Tsimring, Dual delayed feedback provides sensitivity and robustness to the NF-κB signaling module. PLOS Comput. Biol. 9, e1003112 (2013).
-
(2013)
PLOS Comput. Biol.
, vol.9
-
-
Longo, D.M.1
Selimkhanov, J.2
Kearns, J.D.3
Hasty, J.4
Hoffmann, A.5
Tsimring, L.S.6
-
48
-
-
84861219631
-
Allostery and the Monod-Wyman-Changeux model after 50 years
-
J. P. Changeux, Allostery and the Monod-Wyman-Changeux model after 50 years. Annu. Rev. Biophys. 41, 103-133 (2012).
-
(2012)
Annu. Rev. Biophys.
, vol.41
, pp. 103-133
-
-
Changeux, J.P.1
-
49
-
-
79952100792
-
What the Myddosome structure tells us about the initiation of innate immunity
-
N. J. Gay, M. Gangloff, L. A. J. O'Neill, What the Myddosome structure tells us about the initiation of innate immunity. Trends Immunol. 32, 104-109 (2011).
-
(2011)
Trends Immunol.
, vol.32
, pp. 104-109
-
-
Gay, N.J.1
Gangloff, M.2
O'Neill, L.A.J.3
-
50
-
-
78349284384
-
Bistability in apoptosis by receptor clustering
-
K. L. Ho, H. A. Harrington, Bistability in apoptosis by receptor clustering. PLOS Comput. Biol. 6, e1000956 (2010).
-
(2010)
PLOS Comput. Biol.
, vol.6
-
-
Ho, K.L.1
Harrington, H.A.2
-
51
-
-
84863840549
-
NEMO ensures signaling specificity of the pleiotropic IKKβ by directing its kinase activity toward IκBα
-
B. Schröfelbauer, S. Polley, M. Behar, G. Ghosh, A. Hoffmann, NEMO ensures signaling specificity of the pleiotropic IKKβ by directing its kinase activity toward IκBα. Mol. Cell 47, 111-121 (2012).
-
(2012)
Mol. Cell
, vol.47
, pp. 111-121
-
-
Schröfelbauer, B.1
Polley, S.2
Behar, M.3
Ghosh, G.4
Hoffmann, A.5
-
52
-
-
70849112486
-
Cell signaling in space and time: Where proteins come together and when they're apart
-
J. D. Scott, T. Pawson, Cell signaling in space and time: Where proteins come together and when they're apart. Science 326, 1220-1224 (2009).
-
(2009)
Science
, vol.326
, pp. 1220-1224
-
-
Scott, J.D.1
Pawson, T.2
-
53
-
-
77955986202
-
Physiological levels of TNFα stimulation induce stochastic dynamics of NF-κB responses in single living cells
-
D. A. Turner, P. Paszek, D. J. Woodcock, D. E. Nelson, C. A. Horton, Y. Wang, D. G. Spiller, D. A. Rand, M. R. White, C. V. Harper, Physiological levels of TNFα stimulation induce stochastic dynamics of NF-κB responses in single living cells. J. Cell Sci. 123, 2834-2843 (2010).
-
(2010)
J. Cell Sci.
, vol.123
, pp. 2834-2843
-
-
Turner, D.A.1
Paszek, P.2
Woodcock, D.J.3
Nelson, D.E.4
Horton, C.A.5
Wang, Y.6
Spiller, D.G.7
Rand, D.A.8
White, M.R.9
Harper, C.V.10
-
54
-
-
84900406601
-
Positive feedback within a kinase signaling complex functions as a switch mechanism for NF-κB activation
-
H. Shinohara, M. Behar, K. Inoue, M. Hiroshima, T. Yasuda, T. Nagashima, S. Kimura, H. Sanjo, S. Maeda, N. Yumoto, S. Ki, S. Akira, Y. Sako, A. Hoffmann, T. Kurosaki, M. Okada-Hatakeyama, Positive feedback within a kinase signaling complex functions as a switch mechanism for NF-κB activation. Science 344, 760-764 (2014).
-
(2014)
Science
, vol.344
, pp. 760-764
-
-
Shinohara, H.1
Behar, M.2
Inoue, K.3
Hiroshima, M.4
Yasuda, T.5
Nagashima, T.6
Kimura, S.7
Sanjo, H.8
Maeda, S.9
Yumoto, N.10
Ki, S.11
Akira, S.12
Sako, Y.13
Hoffmann, A.14
Kurosaki, T.15
Okada-Hatakeyama, M.16
-
55
-
-
84896575295
-
Recognition of lipopolysaccharide pattern by TLR4 complexes
-
B. S. Park, J. O. Lee, Recognition of lipopolysaccharide pattern by TLR4 complexes. Exp. Mol. Med. 45, e66 (2013).
-
(2013)
Exp. Mol. Med.
, vol.45
, pp. e66
-
-
Park, B.S.1
Lee, J.O.2
-
56
-
-
0142105387
-
Genetic analysis of NF-κB/Rel transcription factors defines functional specificities
-
A. Hoffmann, T. H. Leung, D. Baltimore, Genetic analysis of NF-κB/Rel transcription factors defines functional specificities. EMBO J. 22, 5530-5539 (2003).
-
(2003)
EMBO J.
, vol.22
, pp. 5530-5539
-
-
Hoffmann, A.1
Leung, T.H.2
Baltimore, D.3
-
57
-
-
60749124122
-
The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules
-
S. Hao, D. Baltimore, The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules. Nat. Immunol. 10, 281-288 (2009).
-
(2009)
Nat. Immunol.
, vol.10
, pp. 281-288
-
-
Hao, S.1
Baltimore, D.2
-
58
-
-
33646484899
-
Transcriptional network dynamics in macrophage activation
-
R. Nilsson, V. B. Bajic, H. Suzuki, D. di Bernardo, J. Bjorkegren, S. Katayama, J. F. Reid, M. J. Sweet, M. Gariboldi, P. Carninci, Y. Hayashizaki, D. A. Hume, J. Tegner, T. Ravasi, Transcriptional network dynamics in macrophage activation. Genomics 88, 133-142 (2006).
-
(2006)
Genomics
, vol.88
, pp. 133-142
-
-
Nilsson, R.1
Bajic, V.B.2
Suzuki, H.3
Di Bernardo, D.4
Bjorkegren, J.5
Katayama, S.6
Reid, J.F.7
Sweet, M.J.8
Gariboldi, M.9
Carninci, P.10
Hayashizaki, Y.11
Hume, D.A.12
Tegner, J.13
Ravasi, T.14
-
59
-
-
66449092314
-
Kinetic control of negative feedback regulators of NF-κB/RelA determines their pathogen- and cytokine-receptor signaling specificity
-
V. F. Shih, J. D. Kearns, S. Basak, O. V. Savinova, G. Ghosh, A. Hoffmann, Kinetic control of negative feedback regulators of NF-κB/RelA determines their pathogen- and cytokine-receptor signaling specificity. Proc. Natl. Acad. Sci. U.S.A. 106, 9619-9624 (2009).
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 9619-9624
-
-
Shih, V.F.1
Kearns, J.D.2
Basak, S.3
Savinova, O.V.4
Ghosh, G.5
Hoffmann, A.6
-
60
-
-
84869411578
-
Control of RelB during dendritic cell activation integrates canonical and noncanonical NF-κB pathways
-
V. F. Shih, J. Davis-Turak, M. Macal, J. Q. Huang, J. Ponomarenko, J. D. Kearns, T. Yu, R. Fagerlund, M. Asagiri, E. I. Zuniga, A. Hoffmann, Control of RelB during dendritic cell activation integrates canonical and noncanonical NF-κB pathways. Nat. Immunol. 13, 1162-1170 (2012).
-
(2012)
Nat. Immunol.
, vol.13
, pp. 1162-1170
-
-
Shih, V.F.1
Davis-Turak, J.2
Macal, M.3
Huang, J.Q.4
Ponomarenko, J.5
Kearns, J.D.6
Yu, T.7
Fagerlund, R.8
Asagiri, M.9
Zuniga, E.I.10
Hoffmann, A.11
-
61
-
-
0003519552
-
-
Oxford Univ. Press, New York
-
D. A. Lauffenburger, J. J. Linderman, Receptors: Models for Binding, Trafficking, and Signaling (Oxford Univ. Press, New York, 1993), vol. 365.
-
(1993)
Receptors: Models for Binding, Trafficking, and Signaling
, vol.365
-
-
Lauffenburger, D.A.1
Linderman, J.J.2
-
62
-
-
35048817885
-
Kinetics of binding of LPS to recombinant CD14, TLR4, and MD-2 proteins
-
H. J. Shin, H. Lee, J. D. Park, H. C. Hyun, H. O. Sohn, D. W. Lee, Y. S. Kim, Kinetics of binding of LPS to recombinant CD14, TLR4, and MD-2 proteins. Mol. Cells 24, 119-124 (2007).
-
(2007)
Mol. Cells
, vol.24
, pp. 119-124
-
-
Shin, H.J.1
Lee, H.2
Park, J.D.3
Hyun, H.C.4
Sohn, H.O.5
Lee, D.W.6
Kim, Y.S.7
-
63
-
-
0028924539
-
Lipopolysaccharide binding protein-mediated complexation of lipopolysaccharide with soluble CD14
-
P. S. Tobias, K. Soldau, J. A. Gegner, D. Mintz, R. J. Ulevitch, Lipopolysaccharide binding protein-mediated complexation of lipopolysaccharide with soluble CD14. J. Biol. Chem. 270, 10482-10488 (1995).
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 10482-10488
-
-
Tobias, P.S.1
Soldau, K.2
Gegner, J.A.3
Mintz, D.4
Ulevitch, R.J.5
-
64
-
-
81055129630
-
CD14 controls the LPS-induced endocytosis of Toll-like receptor 4
-
I. Zanoni, R. Ostuni, L. R. Marek, S. Barresi, R. Barbalat, G. M. Barton, F. Granucci, J. C. Kagan, CD14 controls the LPS-induced endocytosis of Toll-like receptor 4. Cell 147, 868-880 (2011).
-
(2011)
Cell
, vol.147
, pp. 868-880
-
-
Zanoni, I.1
Ostuni, R.2
Marek, L.R.3
Barresi, S.4
Barbalat, R.5
Barton, G.M.6
Granucci, F.7
Kagan, J.C.8
-
65
-
-
0032899374
-
The internalization time course of a given lipopolysaccharide chemotype does not correspond to its activation kinetics in monocytes
-
A. Lentschat, V. T. El-Samalouti, J. Schletter, S. Kusumoto, L. Brade, E. T. Rietschel, J. Gerdes, M. Ernst, H.-D. Flad, A. J. Ulmer, The internalization time course of a given lipopolysaccharide chemotype does not correspond to its activation kinetics in monocytes. Infect. Immun. 67, 2515-2521 (1999).
-
(1999)
Infect. Immun.
, vol.67
, pp. 2515-2521
-
-
Lentschat, A.1
El-Samalouti, V.T.2
Schletter, J.3
Kusumoto, S.4
Brade, L.5
Rietschel, E.T.6
Gerdes, J.7
Ernst, M.8
Flad, H.-D.9
Ulmer, A.J.10
-
66
-
-
34547953017
-
Lysosome-associated small Rab GTPase Rab7b negatively regulates TLR4 signaling in macrophages by promoting lysosomal degradation of TLR4
-
Y. Wang, T. Chen, C. Han, D. He, H. Liu, H. An, Z. Cai, X. Cao, Lysosome-associated small Rab GTPase Rab7b negatively regulates TLR4 signaling in macrophages by promoting lysosomal degradation of TLR4. Blood 110, 962-971 (2007).
-
(2007)
Blood
, vol.110
, pp. 962-971
-
-
Wang, Y.1
Chen, T.2
Han, C.3
He, D.4
Liu, H.5
An, H.6
Cai, Z.7
Cao, X.8
-
67
-
-
0028899305
-
Lipopolysaccharide (LPS) signal transduction and clearance. Dual roles for LPS binding protein and membrane CD14
-
J. A. Gegner, R. J. Ulevitch, P. S. Tobias, Lipopolysaccharide (LPS) signal transduction and clearance. Dual roles for LPS binding protein and membrane CD14. J. Biol. Chem. 270, 5320-5325 (1995).
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 5320-5325
-
-
Gegner, J.A.1
Ulevitch, R.J.2
Tobias, P.S.3
-
68
-
-
0141890200
-
Lipopolysaccharide interaction with cell surface Toll-like receptor 4-MD-2: Higher affinity than that with MD-2 or CD14
-
S. Akashi, S. Saitoh, Y. Wakabayashi, T. Kikuchi, N. Takamura, Y. Nagai, Y. Kusumoto, K. Fukase, S. Kusumoto, Y. Adachi, A. Kosugi, K. Miyake, Lipopolysaccharide interaction with cell surface Toll-like receptor 4-MD-2: Higher affinity than that with MD-2 or CD14. J. Exp. Med. 198, 1035-1042 (2003).
-
(2003)
J. Exp. Med.
, vol.198
, pp. 1035-1042
-
-
Akashi, S.1
Saitoh, S.2
Wakabayashi, Y.3
Kikuchi, T.4
Takamura, N.5
Nagai, Y.6
Kusumoto, Y.7
Fukase, K.8
Kusumoto, S.9
Adachi, Y.10
Kosugi, A.11
Miyake, K.12
-
69
-
-
0020674618
-
Endocytosis and the recycling of plasma membrane
-
R. M. Steinman, I. S. Mellman, W. A. Muller, Z. A. Cohn, Endocytosis and the recycling of plasma membrane. J. Cell Biol. 96, 1-27 (1983).
-
(1983)
J. Cell Biol.
, vol.96
, pp. 1-27
-
-
Steinman, R.M.1
Mellman, I.S.2
Muller, W.A.3
Cohn, Z.A.4
-
70
-
-
0033525930
-
The receptor recycling pathway contains two distinct populations of early endosomes with different sorting functions
-
D. R. Sheff, E. A. Daro, M. Hull, I. Mellman, The receptor recycling pathway contains two distinct populations of early endosomes with different sorting functions. J. Cell Biol. 145, 123-139 (1999).
-
(1999)
J. Cell Biol.
, vol.145
, pp. 123-139
-
-
Sheff, D.R.1
Daro, E.A.2
Hull, M.3
Mellman, I.4
-
71
-
-
0242446165
-
Distinct membrane domains on endosomes in the recycling pathway visualized by multicolor imaging of Rab4, Rab5, and Rab11
-
B. Sönnichsen, S. De Renzis, E. Nielsen, J. Rietdorf, M. Zerial, Distinct membrane domains on endosomes in the recycling pathway visualized by multicolor imaging of Rab4, Rab5, and Rab11. J. Cell Biol. 149, 901-914 (2000).
-
(2000)
J. Cell Biol.
, vol.149
, pp. 901-914
-
-
Sönnichsen, B.1
De Renzis, S.2
Nielsen, E.3
Rietdorf, J.4
Zerial, M.5
-
72
-
-
84878560028
-
Emerging roles of recycling endosomes
-
T. Taguchi, Emerging roles of recycling endosomes. J. Biochem. 153, 505-510 (2013).
-
(2013)
J. Biochem.
, vol.153
, pp. 505-510
-
-
Taguchi, T.1
-
73
-
-
84937625867
-
Illuminating endocytosis with targeted pH-sensitive fluorescent compounds
-
poster presented at the Poster B 1994
-
C. Langsdorf, D. Beacham, J. Berlier, D. Cash, T. Huang, K. Kihn, W. Zhou, Illuminating endocytosis with targeted pH-sensitive fluorescent compounds, poster presented at the American Society for Cell Biology (ASCB) annual meeting, Poster B 1994 (2013).
-
(2013)
American Society for Cell Biology (ASCB) Annual Meeting
-
-
Langsdorf, C.1
Beacham, D.2
Berlier, J.3
Cash, D.4
Huang, T.5
Kihn, K.6
Zhou, W.7
-
74
-
-
84892634483
-
Switching of the Relative Dominance Between Feedback Mechanisms in Lipopolysaccharide-Induced NF-kappa B Signaling
-
M. H. Sung, N. Li, Q. Z. Lao, R. A. Gottschalk, G. L. Hager, I. D. C. Fraser, Switching of the Relative Dominance Between Feedback Mechanisms in Lipopolysaccharide-Induced NF-kappa B Signaling. Sci. Signal. 7, ra6 (2014).
-
(2014)
Sci. Signal.
, vol.7
, pp. ra6
-
-
Sung, M.H.1
Li, N.2
Lao, Q.Z.3
Gottschalk, R.A.4
Hager, G.L.5
Fraser, I.D.C.6
|