Information transduction capacity of noisy biochemical signaling networks

Science

Volumn 334, Issue 6054, 2011, Pages 354-358

  Cheong, Raymond ^a   Rhee, Alex ^a   Wang, Chiaochun Joanne ^a   Nemenman, Ilya ^b   Levchenko, Andre ^a  

^a Johns Hopkins University   (United States)

^b EMORY UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; TUMOR NECROSIS FACTOR;

BIOCHEMISTRY; FEEDBACK MECHANISM; GENE EXPRESSION; NETWORK ANALYSIS; NOISE; SIGNAL; TUMOR;

ANIMAL CELL; ARTICLE; CONCEPTUAL FRAMEWORK; CONTROLLED STUDY; COPY NUMBER VARIATION; FIBROBLAST; MOUSE; NEGATIVE FEEDBACK; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; SIGNAL TRANSDUCTION;

EID: 80054841161     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1204553     Document Type: Article

References (41)

1. J. G. Albeck, J. M. Burke, S. L. Spencer, D. A. Lauffenburger, P. K. Sorger, PLoS Biol. 6, e299 (2008).
2. N. Rosenfeld, J. W. Young, U. Alon, P. S. Swain, M. B. Elowitz, Science 307, 1962 (2005).
3. T. J. Perkins, P. S. Swain, Mol. Syst. Biol. 5, 326 (2009).
4. W. J. Blake, M. Kaern, C. R. Cantor, J. J. Collins, Nature 422, 633 (2003).
5. M. B. Elowitz, A. J. Levine, E. D. Siggia, P. S. Swain, Science 297, 1183 (2002).
6. J. Paulsson, Nature 427, 415 (2004).
7. J. M. Pedraza, A. van Oudenaarden, Science 307, 1965 (2005).
8. J. M. Raser, E. K. O'Shea, Science 304, 1811 (2004).
9. T. M. Cover, J. A. Thomas, Elements of Information Theory (Wiley, New York, 1991).
10. R. R. de Ruyter van Steveninck, G. D. Lewen, S. P. Strong, R. Koberle, W. Bialek, Science 275, 1805 (1997).
11. D. Fuller et al., Proc. Natl. Acad. Sci. U.S.A. 107, 9656 (2010).
12. E. Ziv, I. Nemenman, C. H. Wiggins, PLoS ONE 2, e1077 (2007).
13. G. Tkacik, C. G. Callan Jr., W. Bialek, Proc. Natl. Acad. Sci. U.S.A. 105, 12265 (2008).
14. P. Mehta, S. Goyal, T. Long, B. L. Bassler, N. S. Wingreen, Mol. Syst. Biol. 5, 325 (2009).
15. R. Cheong, A. Hoffmann, A. Levchenko, Mol. Syst. Biol. 4, 192 (2008).
16. R. Cheong, C. J. Wang, A. Levchenko, Mol. Cell. Proteomics 8, 433 (2009).
17. S. L. Werner et al., Genes Dev. 22, 2093 (2008).
18. S. Tay et al., Nature 466, 267 (2010).
19. L. Ashall et al., Science 324, 242 (2009).
20. D. E. Nelson et al., Science 306, 704 (2004).
21. R. Cheong et al., J. Biol. Chem. 281, 2945 (2006).
22. A. Hoffmann, A. Levchenko, M. L. Scott, D. Baltimore, Science 298, 1241 (2002).
23. C. Cohen-Saidon, A. A. Cohen, A. Sigal, Y. Liron, U. Alon, Mol. Cell 36, 885 (2009).
24. X. R. Bao, I. D. Fraser, E. A. Wall, S. R. Quake, M. I. Simon, Biophys. J. 99, 2414 (2010).
25. M. Coppey, A. N. Boettiger, A. M. Berezhkovskii, S. Y. Shvartsman, Curr. Biol. 18, 915 (2008).
26. B. B. Averbeck, P. E. Latham, A. Pouget, Nat. Rev. Neurosci. 7, 358 (2006).
27. J. W. Pillow et al., Nature 454, 995 (2008).
28. E. Schneidman, W. Bialek, M. J. Berry II, J. Neurosci. 23, 11539 (2003).
29. H. Wajant, K. Pfizenmaier, P. Scheurich, Cell Death Differ. 10, 45 (2003).
30. A. Becskei, L. Serrano, Nature 405, 590 (2000).
31. I. Lestas, G. Vinnicombe, J. Paulsson, Nature 467, 174 (2010).
32. R. C. Yu et al., Nature 456, 755 (2008).
33. I. E. Wertz et al., Nature 430, 694 (2004).
34. E. G. Lee et al., Science 289, 2350 (2000).
35. V. Shahrezaei, P. S. Swain, Proc. Natl. Acad. Sci. U.S.A. 105, 17256 (2008).
36. S. Krishna, M. H. Jensen, K. Sneppen, Proc. Natl. Acad. Sci. U.S.A. 103, 10840 (2006).
37. S. Thierfelder, K. Ostermann, A. Göbel, G. Rödel, Appl. Biochem. Biotechnol. 163, 954 (2011).
38. K. Francis, B. O. Palsson, Proc. Natl. Acad. Sci. U.S.A. 94, 12258 (1997).
39. J. Parkin, B. Cohen, Lancet 357, 1777 (2001).
40. I. Nemenman, G. D. Lewen, W. Bialek, R. R. de Ruyter van Steveninck, PLOS Comput. Biol. 4, e1000025 (2008).
41. S. P. Strong, R. Koberle, R. R. de Ruyter van Steveninck, W. Bialek, Phys. Rev. Lett. 80, 197 (1998).