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Volumn 9, Issue 6, 2013, Pages

Dual Delayed Feedback Provides Sensitivity and Robustness to the NF-κB Signaling Module

Author keywords

[No Author keywords available]

Indexed keywords

FEEDBACK CONTROL; LINEAR STABILITY ANALYSIS; ROBUST CONTROL; SIGNALING; STOCHASTIC SYSTEMS;

EID: 84879531246     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1003112     Document Type: Article
Times cited : (44)

References (39)
  • 1
    • 0037376655 scopus 로고    scopus 로고
    • Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell
    • Tyson JJ, Chen KC, Novak B, (2003) Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Current opinion in cell biology 15: 221-231.
    • (2003) Current Opinion in Cell Biology , vol.15 , pp. 221-231
    • Tyson, J.J.1    Chen, K.C.2    Novak, B.3
  • 2
    • 41549140462 scopus 로고    scopus 로고
    • Oscillations in notch signaling regulate maintenance of neural progenitors
    • Shimojo H, Ohtsuka T, Kageyama R, (2008) Oscillations in notch signaling regulate maintenance of neural progenitors. Neuron 58: 52-64.
    • (2008) Neuron , vol.58 , pp. 52-64
    • Shimojo, H.1    Ohtsuka, T.2    Kageyama, R.3
  • 4
    • 0037044575 scopus 로고    scopus 로고
    • The IκB-NF-κB signaling module: Temporal control and selective gene activation
    • Hoffmann A, Levchenko A, Scott ML, Baltimore D, (2002) The IκB-NF-κB signaling module: Temporal control and selective gene activation. Science 298: 1241-1245.
    • (2002) Science , vol.298 , pp. 1241-1245
    • Hoffmann, A.1    Levchenko, A.2    Scott, M.L.3    Baltimore, D.4
  • 5
    • 7444254365 scopus 로고    scopus 로고
    • Oscillations in NF-κB signaling control the dynamics of gene expression
    • Nelson DE, Ihekwaba AEC, Elliott M, Johnson JR, Gibney CA, et al. (2004) Oscillations in NF-κB signaling control the dynamics of gene expression. Science 306: 704-708.
    • (2004) Science , vol.306 , pp. 704-708
    • Nelson, D.E.1    Ihekwaba, A.E.C.2    Elliott, M.3    Johnson, J.R.4    Gibney, C.A.5
  • 8
    • 0016201107 scopus 로고
    • Optimal design of feedback control by inhibition
    • Savageau MA, (1974) Optimal design of feedback control by inhibition. Journal of Molecular Evolution 4: 139-156.
    • (1974) Journal of Molecular Evolution , vol.4 , pp. 139-156
    • Savageau, M.A.1
  • 9
    • 52949098296 scopus 로고    scopus 로고
    • Frequency-modulated nuclear localization bursts coordinate gene regulation
    • Cai L, Dalal CK, Elowitz MB, (2008) Frequency-modulated nuclear localization bursts coordinate gene regulation. Nature 455: 485-490.
    • (2008) Nature , vol.455 , pp. 485-490
    • Cai, L.1    Dalal, C.K.2    Elowitz, M.B.3
  • 11
    • 42949171936 scopus 로고    scopus 로고
    • Recurrent initiation: a mechanism for triggering p53 pulses in response to dna damage
    • Batchelor E, Mock C, Bhan I, Loewer A, Lahav G, (2008) Recurrent initiation: a mechanism for triggering p53 pulses in response to dna damage. Molecular cell 30: 277.
    • (2008) Molecular Cell , vol.30 , pp. 277
    • Batchelor, E.1    Mock, C.2    Bhan, I.3    Loewer, A.4    Lahav, G.5
  • 12
    • 15944426727 scopus 로고    scopus 로고
    • Comment on "oscillations in NF-κB signaling control the dynamics of gene expression"
    • Barken D, Wang CJ, Kearns J, Cheong R, Hoffmann A, et al. (2005) Comment on "oscillations in NF-κB signaling control the dynamics of gene expression". Science 308: 52.
    • (2005) Science , vol.308 , pp. 52
    • Barken, D.1    Wang, C.J.2    Kearns, J.3    Cheong, R.4    Hoffmann, A.5
  • 13
    • 64849104716 scopus 로고    scopus 로고
    • Pulsatile stimulation deter-mines timing and specificity of NF-κB-dependent transcription
    • Ashall L, Horton CA, Nelson DE, Paszek P, Harper CV, et al. (2009) Pulsatile stimulation deter-mines timing and specificity of NF-κB-dependent transcription. Science 324: 242-246.
    • (2009) Science , vol.324 , pp. 242-246
    • Ashall, L.1    Horton, C.A.2    Nelson, D.E.3    Paszek, P.4    Harper, C.V.5
  • 14
    • 0036080430 scopus 로고    scopus 로고
    • Do morphogen gradients arise by diffusion?
    • Lander AD, Nie Q, Wan FY, (2002) Do morphogen gradients arise by diffusion? Developmental Cell 2: 785-796.
    • (2002) Developmental Cell , vol.2 , pp. 785-796
    • Lander, A.D.1    Nie, Q.2    Wan, F.Y.3
  • 15
    • 7244245636 scopus 로고    scopus 로고
    • Dpp gradient formation by dynamin-dependent endocytosis: receptor trafficking and the diffusion model
    • Kruse K, Pantazis P, Bollenbach T, Jlicher F, Gonzlez-Gaitn M, (2004) Dpp gradient formation by dynamin-dependent endocytosis: receptor trafficking and the diffusion model. Development 131: 4843-4856.
    • (2004) Development , vol.131 , pp. 4843-4856
    • Kruse, K.1    Pantazis, P.2    Bollenbach, T.3    Jlicher, F.4    Gonzlez-Gaitn, M.5
  • 16
    • 0031879114 scopus 로고    scopus 로고
    • Stochastic kinetic analysis of developmental pathway bi-furcation in phage λ-infected escherichia coli cells
    • Arkin A, Ross J, McAdams HH, (1998) Stochastic kinetic analysis of developmental pathway bi-furcation in phage λ-infected escherichia coli cells. Genetics 149: 1633-1648.
    • (1998) Genetics , vol.149 , pp. 1633-1648
    • Arkin, A.1    Ross, J.2    McAdams, H.H.3
  • 18
    • 15544372633 scopus 로고    scopus 로고
    • Modeling of negative autoregulated genetic networks in single cells
    • Lipshtat A, Perets HB, Balaban NQ, Biham O, (2005) Modeling of negative autoregulated genetic networks in single cells. Gene 347: 265-271.
    • (2005) Gene , vol.347 , pp. 265-271
    • Lipshtat, A.1    Perets, H.B.2    Balaban, N.Q.3    Biham, O.4
  • 19
    • 33748311990 scopus 로고    scopus 로고
    • Dual feedback loops in the gal regulon suppress cellular heterogeneity in yeast
    • Ramsey SA, Smith JJ, Orrell D, Marelli M, Petersen TW, et al. (2006) Dual feedback loops in the gal regulon suppress cellular heterogeneity in yeast. Nature genetics 38: 1082-1087.
    • (2006) Nature Genetics , vol.38 , pp. 1082-1087
    • Ramsey, S.A.1    Smith, J.J.2    Orrell, D.3    Marelli, M.4    Petersen, T.W.5
  • 20
    • 38349013623 scopus 로고    scopus 로고
    • Coupled feedback loops form dynamic motifs of cellular networks
    • Kim JR, Yoon Y, Cho KH, (2008) Coupled feedback loops form dynamic motifs of cellular networks. Biophysical Journal 94: 359-365.
    • (2008) Biophysical Journal , vol.94 , pp. 359-365
    • Kim, J.R.1    Yoon, Y.2    Cho, K.H.3
  • 21
    • 33747388013 scopus 로고    scopus 로고
    • IκBε provides negative feedback to control NF-κB oscillations, signaling dynamics, and inflammatory gene expression
    • Kearns JD, Basak S, Werner SL, Huang CS, Hoffmann A, (2006) IκBε provides negative feedback to control NF-κB oscillations, signaling dynamics, and inflammatory gene expression. The Journal of Cell Biology 173: 659-664.
    • (2006) The Journal of Cell Biology , vol.173 , pp. 659-664
    • Kearns, J.D.1    Basak, S.2    Werner, S.L.3    Huang, C.S.4    Hoffmann, A.5
  • 26
    • 32844454497 scopus 로고    scopus 로고
    • Origins of extrinsic variability in eukaryotic gene expression
    • Volfson D, Marciniak J, Blake WJ, Ostroff N, Tsimring LS, et al. (2005) Origins of extrinsic variability in eukaryotic gene expression. Nature 439: 861-864.
    • (2005) Nature , vol.439 , pp. 861-864
    • Volfson, D.1    Marciniak, J.2    Blake, W.J.3    Ostroff, N.4    Tsimring, L.S.5
  • 28
    • 0347506766 scopus 로고    scopus 로고
    • Signalling networks, inflammation and innate immunity
    • Dower S, Qwarnstrom E, (2003) Signalling networks, inflammation and innate immunity. Biochemical Society Transactions 31: 1462-1471.
    • (2003) Biochemical Society Transactions , vol.31 , pp. 1462-1471
    • Dower, S.1    Qwarnstrom, E.2
  • 29
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie DT, (1977) Exact stochastic simulation of coupled chemical reactions. Journal of Physical Chemistry 81: 2340-2361.
    • (1977) Journal of Physical Chemistry , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 33
    • 33644530060 scopus 로고    scopus 로고
    • A hyper-dynamic equilibrium between promoter-bound and nucleoplasmic dimers controls nf-[kappa]b-dependent gene activity
    • Bosisio D, Marazzi I, Agresti A, Shimizu N, Bianchi ME, et al. (2006) A hyper-dynamic equilibrium between promoter-bound and nucleoplasmic dimers controls nf-[kappa]b-dependent gene activity. EMBO J 25: 798-810.
    • (2006) EMBO J , vol.25 , pp. 798-810
    • Bosisio, D.1    Marazzi, I.2    Agresti, A.3    Shimizu, N.4    Bianchi, M.E.5
  • 34
    • 48749085156 scopus 로고    scopus 로고
    • Encoding NF-κB temporal control in response to TNF: distinct roles for the negative regulators IκBα and a20
    • Werner SL, Kearns JD, Zadorozhnaya V, Lynch C, O'Dea E, et al. (2008) Encoding NF-κB temporal control in response to TNF: distinct roles for the negative regulators IκBα and a20. Genes & Development 22: 2093-2101.
    • (2008) Genes & Development , vol.22 , pp. 2093-2101
    • Werner, S.L.1    Kearns, J.D.2    Zadorozhnaya, V.3    Lynch, C.4    O'Dea, E.5
  • 36
    • 34248995257 scopus 로고    scopus 로고
    • The action potential in mammalian central neurons
    • Bean BP, (2007) The action potential in mammalian central neurons. Nature Reviews Neuroscience 8: 451-465.
    • (2007) Nature Reviews Neuroscience , vol.8 , pp. 451-465
    • Bean, B.P.1
  • 37
    • 0032580202 scopus 로고    scopus 로고
    • Calcium oscillations increase the efficiency and specificity of gene expression
    • Dolmetsch RE, Xu K, Lewis RS, et al. (1998) Calcium oscillations increase the efficiency and specificity of gene expression. Nature 392: 933-935.
    • (1998) Nature , vol.392 , pp. 933-935
    • Dolmetsch, R.E.1    Xu, K.2    Lewis, R.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.