-
1
-
-
70349859881
-
DNA Damage, Aging, and Cancer
-
Hoeijmakers, J. H. J. DNA Damage, Aging, and Cancer New Engl. J. Med. 2009, 361, 1475-1485
-
(2009)
New Engl. J. Med.
, vol.361
, pp. 1475-1485
-
-
Hoeijmakers, J.H.J.1
-
2
-
-
70350504453
-
The DNA-Damage Response in Human Biology and Disease
-
Jackson, S. P.; Bartek, J. The DNA-Damage Response in Human Biology and Disease Nature (London, U. K.) 2009, 461, 1071-1078
-
(2009)
Nature (London, U. K.)
, vol.461
, pp. 1071-1078
-
-
Jackson, S.P.1
Bartek, J.2
-
3
-
-
44449112688
-
Base Excision DNA Repair
-
Zharkov, D. O. Base Excision DNA Repair Cell. Mol. Life Sci. 2008, 65, 1544-1565
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 1544-1565
-
-
Zharkov, D.O.1
-
4
-
-
84898861312
-
A Chemical and Kinetic Perspective on Base Excision Repair of DNA
-
Schermerhorn, K. M.; Delaney, S. A Chemical and Kinetic Perspective on Base Excision Repair of DNA Acc. Chem. Res. 2014, 47, 1238-1246
-
(2014)
Acc. Chem. Res.
, vol.47
, pp. 1238-1246
-
-
Schermerhorn, K.M.1
Delaney, S.2
-
5
-
-
0042342532
-
A Mechanistic Perspective on the Chemistry of DNA Repair Glycosylases
-
Stivers, J. T.; Jiang, Y. L. A Mechanistic Perspective on the Chemistry of DNA Repair Glycosylases Chem. Rev. 2003, 103, 2729-2759
-
(2003)
Chem. Rev.
, vol.103
, pp. 2729-2759
-
-
Stivers, J.T.1
Jiang, Y.L.2
-
6
-
-
33644635257
-
Toward a Detailed Understanding of Base Excision Repair Enzymes: Transition State and Mechanistic Analyses of N-Glycoside Hydrolysis and N-Glycoside Transfer
-
Berti, P. J.; McCann, J. A. B. Toward a Detailed Understanding of Base Excision Repair Enzymes: Transition State and Mechanistic Analyses of N-Glycoside Hydrolysis and N-Glycoside Transfer Chem. Rev. 2006, 106, 506-555
-
(2006)
Chem. Rev.
, vol.106
, pp. 506-555
-
-
Berti, P.J.1
McCann, J.A.B.2
-
7
-
-
84887383501
-
Repair of Oxidative DNA Damage and Cancer: Recent Progress in DNA Base Excision Repair
-
Scott, T. L.; Rangaswamy, S.; Wicker, C. A.; Izumi, T. Repair of Oxidative DNA Damage and Cancer: Recent Progress in DNA Base Excision Repair Antioxid. Redox Signaling 2014, 20, 708-726
-
(2014)
Antioxid. Redox Signaling
, vol.20
, pp. 708-726
-
-
Scott, T.L.1
Rangaswamy, S.2
Wicker, C.A.3
Izumi, T.4
-
8
-
-
0037440169
-
Mutagenic Potentials of Damaged Nucleic Acids Produced by Reactive Oxygen/Nitrogen Species: Approaches Using Synthetic Oligonucleotides and Nucleotides
-
Kamiya, H. Mutagenic Potentials of Damaged Nucleic Acids Produced by Reactive Oxygen/Nitrogen Species: Approaches Using Synthetic Oligonucleotides and Nucleotides Nucleic Acids Res. 2003, 31, 517-531
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 517-531
-
-
Kamiya, H.1
-
9
-
-
33745013111
-
Oxidative Stress and Neurodegeneration: Where Are We Now?
-
Halliwell, B. Oxidative Stress and Neurodegeneration: Where Are We Now? J. Neurochem. 2006, 97, 1634-1658
-
(2006)
J. Neurochem.
, vol.97
, pp. 1634-1658
-
-
Halliwell, B.1
-
10
-
-
77953021493
-
Oxidatively Generated Base Damage to Cellular DNA
-
Cadet, J.; Douki, T.; Ravanat, J.-L. Oxidatively Generated Base Damage to Cellular DNA Free Radicals Biol. Med. 2010, 49, 9-21
-
(2010)
Free Radicals Biol. Med.
, vol.49
, pp. 9-21
-
-
Cadet, J.1
Douki, T.2
Ravanat, J.-L.3
-
11
-
-
54049083863
-
DNA Damage and Radical Reactions: Mechanistic Aspects, Formation in Cells and Repair Studies
-
Cadet, J.; Carell, T.; Cellai, L.; Chatgilialoglu, C.; Gimisis, T.; Miranda, M.; ONeill, P.; Ravanat, J. L.; Robert, M. DNA Damage and Radical Reactions: Mechanistic Aspects, Formation in Cells and Repair Studies Chimia 2008, 62, 742-749
-
(2008)
Chimia
, vol.62
, pp. 742-749
-
-
Cadet, J.1
Carell, T.2
Cellai, L.3
Chatgilialoglu, C.4
Gimisis, T.5
Miranda, M.6
Oneill, P.7
Ravanat, J.L.8
Robert, M.9
-
12
-
-
53849091350
-
Biomarkers of Oxidative Damage to DNA and Repair
-
Loft, S.; Danielsen, P. H.; Mikkelsen, L.; Risom, L.; Forchhammer, L.; M?ller, P. Biomarkers of Oxidative Damage to DNA and Repair Biochem. Soc. Trans. 2008, 36, 1071-1076
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 1071-1076
-
-
Loft, S.1
Danielsen, P.H.2
Mikkelsen, L.3
Risom, L.4
Forchhammer, L.5
Mller, P.6
-
13
-
-
34147174320
-
Significance of Error-Avoiding Mechanisms for Oxidative DNA Damage in Carcinogenesis
-
Tsuzuki, T.; Nakatsu, Y.; Nakabeppu, Y. Significance of Error-Avoiding Mechanisms for Oxidative DNA Damage in Carcinogenesis Cancer Sci. 2007, 98, 465-470
-
(2007)
Cancer Sci.
, vol.98
, pp. 465-470
-
-
Tsuzuki, T.1
Nakatsu, Y.2
Nakabeppu, Y.3
-
14
-
-
44449161947
-
DNA Repair of Oxidative DNA Damage in Human Carcinogenesis: Potential Application for Cancer Risk Assessment and Prevention
-
Paz-Elizur, T.; Sevilya, Z.; Leitner-Dagan, Y.; Elinger, D.; Roisman, L. C.; Livneh, Z. DNA Repair of Oxidative DNA Damage in Human Carcinogenesis: Potential Application for Cancer Risk Assessment and Prevention Cancer Lett. 2008, 266, 60-72
-
(2008)
Cancer Lett.
, vol.266
, pp. 60-72
-
-
Paz-Elizur, T.1
Sevilya, Z.2
Leitner-Dagan, Y.3
Elinger, D.4
Roisman, L.C.5
Livneh, Z.6
-
15
-
-
79956191022
-
Role of Oxidative Stress and DNA Damage in Human Carcinogenesis
-
Kryston, T. B.; Georgiev, A. B.; Pissis, P.; Georgakilas, A. G. Role of Oxidative Stress and DNA Damage in Human Carcinogenesis Mutat. Res., Fundam. Mol. Mech. Mutagen. 2011, 711, 193-201
-
(2011)
Mutat. Res., Fundam. Mol. Mech. Mutagen.
, vol.711
, pp. 193-201
-
-
Kryston, T.B.1
Georgiev, A.B.2
Pissis, P.3
Georgakilas, A.G.4
-
16
-
-
79956196320
-
Reactive Oxygen Species (ROS) - Induced Genetic and Epigenetic Alterations in Human Carcinogenesis
-
Ziech, D.; Franco, R.; Pappa, A.; Panayiotidis, M. I. Reactive Oxygen Species (ROS)-Induced Genetic and Epigenetic Alterations in Human Carcinogenesis Mutat. Res., Fundam. Mol. Mech. Mutagen. 2011, 711, 167-173
-
(2011)
Mutat. Res., Fundam. Mol. Mech. Mutagen.
, vol.711
, pp. 167-173
-
-
Ziech, D.1
Franco, R.2
Pappa, A.3
Panayiotidis, M.I.4
-
17
-
-
4444339833
-
Oxidative DNA Damage and Disease: Induction, Repair and Significance
-
Evans, M. D.; Dizdaroglu, M.; Cooke, M. S. Oxidative DNA Damage and Disease: Induction, Repair and Significance Mutat. Res. 2004, 567, 1-61
-
(2004)
Mutat. Res.
, vol.567
, pp. 1-61
-
-
Evans, M.D.1
Dizdaroglu, M.2
Cooke, M.S.3
-
18
-
-
79953742842
-
The 8-Oxoguanine DNA N-Glycosylase 1 (hOgg1) Ser326Cys Variant Affects the Susceptibility to Graves Disease
-
Tanrikulu, S.; Dogru-Abbasoglu, S.; Ozderya, A.; Ademoglu, E.; Karadag, B.; Erbil, Y.; Uysal, M. The 8-Oxoguanine DNA N-Glycosylase 1 (hOgg1) Ser326Cys Variant Affects the Susceptibility to Graves Disease Cell Biochem. Funct. 2011, 29, 244-248
-
(2011)
Cell Biochem. Funct.
, vol.29
, pp. 244-248
-
-
Tanrikulu, S.1
Dogru-Abbasoglu, S.2
Ozderya, A.3
Ademoglu, E.4
Karadag, B.5
Erbil, Y.6
Uysal, M.7
-
19
-
-
84858714192
-
Regulation of Oxidative DNA Damage Repair: The Adenine: 8-Oxo-Guanine Problem
-
Markkanen, E.; Hubscher, U.; van Loon, B. Regulation of Oxidative DNA Damage Repair: The Adenine: 8-Oxo-Guanine Problem Cell Cycle 2012, 11, 1070-1075
-
(2012)
Cell Cycle
, vol.11
, pp. 1070-1075
-
-
Markkanen, E.1
Hubscher, U.2
Van Loon, B.3
-
20
-
-
84862497076
-
8-Oxoguanine DNA Glycosylases: One Lesion, Three Subfamilies
-
Faucher, F.; Doublie, S.; Jia, Z. C. 8-Oxoguanine DNA Glycosylases: One Lesion, Three Subfamilies Int. J. Mol. Sci. 2012, 13, 6711-6729
-
(2012)
Int. J. Mol. Sci.
, vol.13
, pp. 6711-6729
-
-
Faucher, F.1
Doublie, S.2
Jia, Z.C.3
-
21
-
-
57749171384
-
Repair of 8-Oxoguanine in DNA. The Mechanisms of Enzymatic Catalysis
-
Rogacheva, M. V.; Kuznetsova, S. A. Repair of 8-Oxoguanine in DNA. The Mechanisms of Enzymatic Catalysis Russ. Chem. Rev. 2008, 77, 765-788
-
(2008)
Russ. Chem. Rev.
, vol.77
, pp. 765-788
-
-
Rogacheva, M.V.1
Kuznetsova, S.A.2
-
22
-
-
33750079253
-
A Nucleobase Lesion Remodels the Interaction of Its Normal Neighbor in a DNA Glycosylase Complex
-
Banerjee, A.; Verdine, G. L. A Nucleobase Lesion Remodels the Interaction of Its Normal Neighbor in a DNA Glycosylase Complex Proc. Natl. Acad. Sci. U. S. A. 2006, 103, 15020-15025
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 15020-15025
-
-
Banerjee, A.1
Verdine, G.L.2
-
23
-
-
0346319010
-
Product-Assisted Catalysis in Base-Excision DNA Repair
-
Fromme, J. C.; Bruner, S. D.; Yang, W.; Karplus, M.; Verdine, G. L. Product-Assisted Catalysis in Base-Excision DNA Repair Nat. Struct. Biol. 2003, 10, 204-211
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 204-211
-
-
Fromme, J.C.1
Bruner, S.D.2
Yang, W.3
Karplus, M.4
Verdine, G.L.5
-
24
-
-
0031239573
-
The Critical Active-Site Amine of the Human 8-Oxoguanine DNA Glycosylase, hOgg1: Direct Identification, Ablation and Chemical Reconstitution
-
Nash, H. M.; Lu, R. Z.; Lane, W. S.; Verdine, G. L. The Critical Active-Site Amine of the Human 8-Oxoguanine DNA Glycosylase, hOgg1: Direct Identification, Ablation and Chemical Reconstitution Chem. Biol. 1997, 4, 693-702
-
(1997)
Chem. Biol.
, vol.4
, pp. 693-702
-
-
Nash, H.M.1
Lu, R.Z.2
Lane, W.S.3
Verdine, G.L.4
-
25
-
-
1342285213
-
Catalytic and DNA-Binding Properties of the Human Ogg1 DNA N-Glycosylase/Ap Lyase: Biochemical Exploration of H270, Q315 and F319, Three Amino Acids of the 8-Oxoguanine-Binding Pocket
-
van der Kemp, P. A.; Charbonnier, J. B.; Audebert, M.; Boiteux, S. Catalytic and DNA-Binding Properties of the Human Ogg1 DNA N-Glycosylase/Ap Lyase: Biochemical Exploration of H270, Q315 and F319, Three Amino Acids of the 8-Oxoguanine-Binding Pocket Nucleic Acids Res. 2004, 32, 570-578
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 570-578
-
-
Van Der Kemp, P.A.1
Charbonnier, J.B.2
Audebert, M.3
Boiteux, S.4
-
26
-
-
78651243116
-
Separation-of-Function Mutants Unravel the Dual-Reaction Mode of Human 8-Oxoguanine DNA Glycosylase
-
Dalhus, B.; Forsbring, M.; Helle, I. H.; Vik, E. S.; Forstrøm, R. J.; Backe, P. H.; Alseth, I.; Bjøras, M. Separation-of-Function Mutants Unravel the Dual-Reaction Mode of Human 8-Oxoguanine DNA Glycosylase Structure (Cambridge, MA, U. S.) 2011, 19, 117-127
-
(2011)
Structure (Cambridge, MA, U. S.)
, vol.19
, pp. 117-127
-
-
Dalhus, B.1
Forsbring, M.2
Helle, I.H.3
Vik, E.S.4
Forstrøm, R.J.5
Backe, P.H.6
Alseth, I.7
Bjøras, M.8
-
27
-
-
84885541289
-
Step-by-Step Mechanism of DNA Damage Recognition by Human 8-Oxoguanine DNA Glycosylase
-
Kuznetsova, A. A.; Kuznetsov, N. A.; Ishchenko, A. A.; Saparbaev, M. K.; Fedorova, O. S. Step-by-Step Mechanism of DNA Damage Recognition by Human 8-Oxoguanine DNA Glycosylase Biochim. Biophys. Acta 2014, 1840, 387-395
-
(2014)
Biochim. Biophys. Acta
, vol.1840
, pp. 387-395
-
-
Kuznetsova, A.A.1
Kuznetsov, N.A.2
Ishchenko, A.A.3
Saparbaev, M.K.4
Fedorova, O.S.5
-
28
-
-
84908450138
-
Structural Features of the Interaction between Human 8-Oxoguanine DNA Glycosylase Hogg1 and DNA
-
Koval, V.; Knorre, D.; Fedorova, O. Structural Features of the Interaction between Human 8-Oxoguanine DNA Glycosylase Hogg1 and DNA Acta Naturae 2014, 6, 52
-
(2014)
Acta Naturae
, vol.6
, pp. 52
-
-
Koval, V.1
Knorre, D.2
Fedorova, O.3
-
29
-
-
0037452513
-
Structural and Biochemical Exploration of a Critical Amino Acid in Human 8-Oxoguanine Glycosylase
-
Norman, D. P. G.; Chung, S. J.; Verdine, G. L. Structural and Biochemical Exploration of a Critical Amino Acid in Human 8-Oxoguanine Glycosylase Biochemistry 2003, 42, 1564-1572
-
(2003)
Biochemistry
, vol.42
, pp. 1564-1572
-
-
Norman, D.P.G.1
Chung, S.J.2
Verdine, G.L.3
-
30
-
-
0030861915
-
DNA Glycosylases in the Base Excision Repair of DNA
-
Krokan, H. E.; Standal, R.; Slupphaug, G. DNA Glycosylases in the Base Excision Repair of DNA Biochem. J. 1997, 325, 1-16
-
(1997)
Biochem. J.
, vol.325
, pp. 1-16
-
-
Krokan, H.E.1
Standal, R.2
Slupphaug, G.3
-
31
-
-
0030738194
-
Cloning and Characterization of a Mammalian 8-Oxoguanine DNA Glycosylase
-
Rosenquist, T. A.; Zharkov, D. O.; Grollman, A. P. Cloning and Characterization of a Mammalian 8-Oxoguanine DNA Glycosylase Proc. Natl. Acad. Sci. U. S. A. 1997, 94, 7429-7434
-
(1997)
Proc. Natl. Acad. Sci. U. S. A.
, vol.94
, pp. 7429-7434
-
-
Rosenquist, T.A.1
Zharkov, D.O.2
Grollman, A.P.3
-
32
-
-
0034666313
-
Substrate Specificity and Reaction Mechanism of Murine 8-Oxoguanine-DNA Glycosylase
-
Zharkov, D. O.; Rosenquist, T. A.; Gerchman, S. E.; Grollman, A. P. Substrate Specificity and Reaction Mechanism of Murine 8-Oxoguanine-DNA Glycosylase J. Biol. Chem. 2000, 275, 28607-28617
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 28607-28617
-
-
Zharkov, D.O.1
Rosenquist, T.A.2
Gerchman, S.E.3
Grollman, A.P.4
-
33
-
-
0035863739
-
Stimulation of Human 8-Oxoguanine-DNA Glycosylase by AP-Endonuclease: Potential Coordination of the Initial Steps in Base Excision Repair
-
Hill, J. W.; Hazra, T. K.; Izumi, T.; Mitra, S. Stimulation of Human 8-Oxoguanine-DNA Glycosylase by AP-Endonuclease: Potential Coordination of the Initial Steps in Base Excision Repair Nucleic Acids Res. 2001, 29, 430-438
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 430-438
-
-
Hill, J.W.1
Hazra, T.K.2
Izumi, T.3
Mitra, S.4
-
34
-
-
22444442634
-
Kinetics of Substrate Recognition and Cleavage by Human 8-Oxoguanine-DNA Glycosylase
-
Kuznetsov, N. A.; Koval, V. V.; Zharkov, D. O.; Nevinsky, G. A.; Douglas, K. T.; Fedorova, O. S. Kinetics of Substrate Recognition and Cleavage by Human 8-Oxoguanine-DNA Glycosylase Nucleic Acids Res. 2005, 33, 3919-3931
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 3919-3931
-
-
Kuznetsov, N.A.1
Koval, V.V.2
Zharkov, D.O.3
Nevinsky, G.A.4
Douglas, K.T.5
Fedorova, O.S.6
-
35
-
-
38349130992
-
Efficient Removal of Formamidopyrimidines by 8-Oxoguanine Glycosylases
-
Krishnamurthy, N.; Haraguchi, K.; Greenberg, M. M.; David, S. S. Efficient Removal of Formamidopyrimidines by 8-Oxoguanine Glycosylases Biochemistry 2008, 47, 1043-1050
-
(2008)
Biochemistry
, vol.47
, pp. 1043-1050
-
-
Krishnamurthy, N.1
Haraguchi, K.2
Greenberg, M.M.3
David, S.S.4
-
36
-
-
0035869114
-
Mechanism of Stimulation of the DNA Glycosylase Activity of Hogg1 by the Major Human AP Endonuclease: Bypass of the AP Lyase Activity Step
-
Vidal, A. E.; Hickson, I. D.; Boiteux, S.; Radicella, J. P. Mechanism of Stimulation of the DNA Glycosylase Activity of Hogg1 by the Major Human AP Endonuclease: Bypass of the AP Lyase Activity Step Nucleic Acids Res. 2001, 29, 1285-1292
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1285-1292
-
-
Vidal, A.E.1
Hickson, I.D.2
Boiteux, S.3
Radicella, J.P.4
-
37
-
-
12344307152
-
Product Inhibition and Magnesium Modulate the Dual Reaction Mode of Hogg1
-
Morland, I.; Luna, L.; Gustad, E.; Seeberg, E.; Bjøras, M. Product Inhibition and Magnesium Modulate the Dual Reaction Mode of Hogg1 DNA Repair 2005, 4, 381-387
-
(2005)
DNA Repair
, vol.4
, pp. 381-387
-
-
Morland, I.1
Luna, L.2
Gustad, E.3
Seeberg, E.4
Bjøras, M.5
-
38
-
-
84865973920
-
Mechanistic and Conformational Flexibility of the Covalent Linkage Formed during β-Lyase Activity on an AP-Site: Application to Hogg1
-
Kellie, J. L.; Wetmore, S. D. Mechanistic and Conformational Flexibility of the Covalent Linkage Formed During β-Lyase Activity on an AP-Site: Application to Hogg1 J. Phys. Chem. B 2012, 116, 10786-10797
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 10786-10797
-
-
Kellie, J.L.1
Wetmore, S.D.2
-
39
-
-
42649085059
-
Transition-State Analysis of the DNA Repair Enzyme MutY
-
McCann, J. A. B.; Berti, P. J. Transition-State Analysis of the DNA Repair Enzyme MutY J. Am. Chem. Soc. 2008, 130, 5789-5797
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 5789-5797
-
-
McCann, J.A.B.1
Berti, P.J.2
-
40
-
-
0034700259
-
Kinetic Isotope Effect Studies of the Reaction Catalyzed by Uracil DNA Glycosylase: Evidence for an Oxocarbenium Ion-Uracil Anion Intermediate
-
Werner, R. M.; Stivers, J. T. Kinetic Isotope Effect Studies of the Reaction Catalyzed by Uracil DNA Glycosylase: Evidence for an Oxocarbenium Ion-Uracil Anion Intermediate Biochemistry 2000, 39, 14054-14064
-
(2000)
Biochemistry
, vol.39
, pp. 14054-14064
-
-
Werner, R.M.1
Stivers, J.T.2
-
41
-
-
80053510209
-
Modeling the Chemical Step Utilized by Human Alkyladenine DNA Glycosylase: A Concerted Mechanism Aids in Selectively Excising Damaged Purines
-
Rutledge, L. R.; Wetmore, S. D. Modeling the Chemical Step Utilized by Human Alkyladenine DNA Glycosylase: A Concerted Mechanism Aids in Selectively Excising Damaged Purines J. Am. Chem. Soc. 2011, 133, 16258-16269
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 16258-16269
-
-
Rutledge, L.R.1
Wetmore, S.D.2
-
42
-
-
84861398910
-
Role of Environment for Catalysis of the DNA Repair Enzyme MutY
-
Brunk, E.; Arey, J. S.; Rothlisberger, U. Role of Environment for Catalysis of the DNA Repair Enzyme MutY J. Am. Chem. Soc. 2012, 134, 8608-8616
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 8608-8616
-
-
Brunk, E.1
Arey, J.S.2
Rothlisberger, U.3
-
43
-
-
84889241044
-
Standard Role for a Conserved Aspartate or More Direct Involvement in Deglycosylation? An ONIOM and MD Investigation of Adenine-DNA Glycosylase
-
Kellie, J. L.; Wilson, K. A.; Wetmore, S. D. Standard Role for a Conserved Aspartate or More Direct Involvement in Deglycosylation? An ONIOM and MD Investigation of Adenine-DNA Glycosylase Biochemistry 2013, 52, 8753-8765
-
(2013)
Biochemistry
, vol.52
, pp. 8753-8765
-
-
Kellie, J.L.1
Wilson, K.A.2
Wetmore, S.D.3
-
44
-
-
78149279933
-
Promiscuous DNA Alkyladenine Glycosylase Dramatically Favors a Bound Lesion over Undamaged Adenine
-
Alexandrova, A. N. Promiscuous DNA Alkyladenine Glycosylase Dramatically Favors a Bound Lesion over Undamaged Adenine Biophys. Chem. 2010, 152, 118-127
-
(2010)
Biophys. Chem.
, vol.152
, pp. 118-127
-
-
Alexandrova, A.N.1
-
45
-
-
79955826385
-
A Qm/Qm Investigation of the hUNG2 Reaction Surface: The Untold Tale of a Catalytic Residue
-
Przybylski, J. L.; Wetmore, S. D. A Qm/Qm Investigation of the hUNG2 Reaction Surface: The Untold Tale of a Catalytic Residue Biochemistry 2011, 50, 4218-4227
-
(2011)
Biochemistry
, vol.50
, pp. 4218-4227
-
-
Przybylski, J.L.1
Wetmore, S.D.2
-
46
-
-
14844345843
-
Theoretical Study of the Human DNA Repair Protein hOgg1 Activity
-
Schyman, P.; Danielsson, J.; Pinak, M.; Laaksonen, A. Theoretical Study of the Human DNA Repair Protein hOgg1 Activity J. Phys. Chem. A 2005, 109, 1713-1719
-
(2005)
J. Phys. Chem. A
, vol.109
, pp. 1713-1719
-
-
Schyman, P.1
Danielsson, J.2
Pinak, M.3
Laaksonen, A.4
-
47
-
-
34347331176
-
Computational Clues for a New Mechanism in the Glycosylase Activity of the Human DNA Repair Protein hOgg1. A Generalized Paradigm for Purine-Repairing Systems?
-
Calvaresi, M.; Bottoni, A.; Garavelli, M. Computational Clues for a New Mechanism in the Glycosylase Activity of the Human DNA Repair Protein hOgg1. A Generalized Paradigm for Purine-Repairing Systems? J. Phys. Chem. B 2007, 111, 6557-6570
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 6557-6570
-
-
Calvaresi, M.1
Bottoni, A.2
Garavelli, M.3
-
48
-
-
44649165675
-
The Effects of Oxidation and Protonation on the N-Glycosidic Bond Stability of 8-Oxo-2′-Deoxyguanosine: Dft Study
-
Zheng, Y.; Xue, Y.; Yan, S. G. The Effects of Oxidation and Protonation on the N-Glycosidic Bond Stability of 8-Oxo-2′-Deoxyguanosine: Dft Study THEOCHEM 2008, 860, 52-57
-
(2008)
THEOCHEM
, vol.860
, pp. 52-57
-
-
Zheng, Y.1
Xue, Y.2
Yan, S.G.3
-
49
-
-
84867632541
-
Pyramidalization of the Glycosidic Nitrogen Provides the Way for Efficient Cleavage of the N-Glycosidic Bond of 8-Oxog with the hOgg1 DNA Repair Protein
-
Šebera, J.; Trantírek, L.; Tanaka, Y.; Sychrovský, V. Pyramidalization of the Glycosidic Nitrogen Provides the Way for Efficient Cleavage of the N-Glycosidic Bond of 8-Oxog with the hOgg1 DNA Repair Protein J. Phys. Chem. B 2012, 116, 12535-12544
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 12535-12544
-
-
Šebera, J.1
Trantírek, L.2
Tanaka, Y.3
Sychrovský, V.4
-
50
-
-
77649096674
-
Effects of Nucleophile, Oxidative Damage, and Nucleobase Orientation on the Glycosidic Bond Cleavage in Deoxyguanosine
-
Shim, E. J.; Przybylski, J. L.; Wetmore, S. D. Effects of Nucleophile, Oxidative Damage, and Nucleobase Orientation on the Glycosidic Bond Cleavage in Deoxyguanosine J. Phys. Chem. B 2010, 114, 2319-2326
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 2319-2326
-
-
Shim, E.J.1
Przybylski, J.L.2
Wetmore, S.D.3
-
51
-
-
84907611568
-
The Activation of N-Glycosidic Bond Cleavage Performed by Base-Excision Repair Enzyme Hogg1; Theoretical Study of the Role of Lys 249 Residue in Activation of G, Oxog and Fapyg
-
Šebera, J.; Trantírek, L.; Tanaka, Y.; Nencka, R.; Fukal, J.; Sychrovský, V. The Activation of N-Glycosidic Bond Cleavage Performed by Base-Excision Repair Enzyme Hogg1; Theoretical Study of the Role of Lys 249 Residue in Activation of G, Oxog and Fapyg RSC Adv. 2014, 4, 44043-44051
-
(2014)
RSC Adv.
, vol.4
, pp. 44043-44051
-
-
Šebera, J.1
Trantírek, L.2
Tanaka, Y.3
Nencka, R.4
Fukal, J.5
Sychrovský, V.6
-
52
-
-
18244376096
-
Quantum Chemical Study on Base Excision Mechanism of 8-Oxoguanine DNA Glycosylase: Substrate-Assisted Catalysis of the N-Glycosidic Linkage Cleavage Reaction
-
Osakabe, T.; Fujii, Y.; Hata, M.; Tsuda, M.; Neya, S.; Hoshino, T. Quantum Chemical Study on Base Excision Mechanism of 8-Oxoguanine DNA Glycosylase: Substrate-Assisted Catalysis of the N-Glycosidic Linkage Cleavage Reaction Chem-Bio Inf. J. 2004, 4, 73-92
-
(2004)
Chem-Bio Inf. J.
, vol.4
, pp. 73-92
-
-
Osakabe, T.1
Fujii, Y.2
Hata, M.3
Tsuda, M.4
Neya, S.5
Hoshino, T.6
-
53
-
-
57349090665
-
Very Fast Prediction and Rationalization of pK(a) Values for Protein-Ligand Complexes
-
Bas, D. C.; Rogers, D. M.; Jensen, J. H. Very Fast Prediction and Rationalization of pK(a) Values for Protein-Ligand Complexes Proteins: Struct., Funct., Bioinf. 2008, 73, 765-783
-
(2008)
Proteins: Struct., Funct., Bioinf.
, vol.73
, pp. 765-783
-
-
Bas, D.C.1
Rogers, D.M.2
Jensen, J.H.3
-
54
-
-
28644432877
-
Very Fast Empirical Prediction and Rationalization of Protein pK(a) Values
-
Li, H.; Robertson, A. D.; Jensen, J. H. Very Fast Empirical Prediction and Rationalization of Protein pK(a) Values Proteins: Struct., Funct., Bioinf. 2005, 61, 7040-721
-
(2005)
Proteins: Struct., Funct., Bioinf.
, vol.61
, pp. 7040-7721
-
-
Li, H.1
Robertson, A.D.2
Jensen, J.H.3
-
55
-
-
79951476387
-
Propka3: Consistent Treatment of Internal and Surface Residues in Empirical pK(a) Predictions
-
Olsson, M. H. M.; Sondergaard, C. R.; Rostkowski, M.; Jensen, J. H. Propka3: Consistent Treatment of Internal and Surface Residues in Empirical pK(a) Predictions J. Chem. Theory Comput. 2011, 7, 525-537
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 525-537
-
-
Olsson, M.H.M.1
Sondergaard, C.R.2
Rostkowski, M.3
Jensen, J.H.4
-
56
-
-
79960258119
-
Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pK(a) Values
-
Sondergaard, C. R.; Olsson, M. H. M.; Rostkowski, M.; Jensen, J. H. Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pK(a) Values J. Chem. Theory Comput. 2011, 7, 2284-2295
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 2284-2295
-
-
Sondergaard, C.R.1
Olsson, M.H.M.2
Rostkowski, M.3
Jensen, J.H.4
-
57
-
-
84933051816
-
Impact of Radiation Damage on DNA Determined by Computational Simulation
-
Pinak, M. Impact of Radiation Damage on DNA Determined by Computational Simulation Jpn. J. Health Phys. 2004, 39, 35-41
-
(2004)
Jpn. J. Health Phys.
, vol.39
, pp. 35-41
-
-
Pinak, M.1
-
58
-
-
67650468432
-
The R46Q, R131Q and R154H Polymorphs of Human DNA Glycosylase/β-Lyase hOgg1 Severely Distort the Active Site and DNA Recognition Site but Do Not Cause Unfolding
-
Anderson, P. C.; Daggett, V. The R46Q, R131Q and R154H Polymorphs of Human DNA Glycosylase/β-Lyase hOgg1 Severely Distort the Active Site and DNA Recognition Site but Do Not Cause Unfolding J. Am. Chem. Soc. 2009, 131, 9506-9515
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 9506-9515
-
-
Anderson, P.C.1
Daggett, V.2
-
59
-
-
33748518255
-
Comparison of Multiple Amber Force Fields and Development of Improved Protein Backbone Parameters
-
Hornak, V.; Abel, R.; Okur, A.; Strockbine, B.; Roitberg, A.; Simmerling, C. Comparison of Multiple Amber Force Fields and Development of Improved Protein Backbone Parameters Proteins: Struct., Funct., Bioinf. 2006, 65, 712-725
-
(2006)
Proteins: Struct., Funct., Bioinf.
, vol.65
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
60
-
-
78049265751
-
-
University of California: San Francisco, CA
-
Case, D. A.; Darden, T. A.; Cheatham, T. E., III; Simmerling, C. L.; Wang, J.; Duke, R. E.; Luo, R.; Crowley, M.; Walker, R. C.; Zhang, W.; Amber 11; University of California: San Francisco, CA, 2010.
-
(2010)
Amber 11
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Crowley, M.8
Walker, R.C.9
Zhang, W.10
-
61
-
-
84862614975
-
-
University of California: San Francisco, CA
-
Case, D. A.; Darden, T. A.; Cheatham, T. E., III; Simmerling, C. L.; Wang, J.; Duke, R. E.; Luo, R.; Walker, R. C.; Zhang, W.; Merz, K. M.; Amber 12; University of California: San Francisco, CA, 2012.
-
(2012)
Amber 12
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Walker, R.C.8
Zhang, W.9
Merz, K.M.10
-
62
-
-
84879386271
-
Selecting DFT Methods for Use in Optimizations of Enzyme Active Sites: Applications to Oniom Treatments of DNA Glycosylases
-
Kellie, J. L.; Wetmore, S. D. Selecting DFT Methods for Use in Optimizations of Enzyme Active Sites: Applications to Oniom Treatments of DNA Glycosylases Can. J. Chem. 2013, 91, 559-572
-
(2013)
Can. J. Chem.
, vol.91
, pp. 559-572
-
-
Kellie, J.L.1
Wetmore, S.D.2
-
63
-
-
84861227544
-
Characteristic Vibration Patterns of Odor Compounds from Bread-Baking Volatiles Upon Protein Binding: Density Functional and Oniom Study and Principal Component Analysis
-
Treesuwan, W.; Hirao, H.; Morokuma, K.; Hannongbua, S. Characteristic Vibration Patterns of Odor Compounds from Bread-Baking Volatiles Upon Protein Binding: Density Functional and Oniom Study and Principal Component Analysis J. Mol. Model. 2012, 18, 2227-2240
-
(2012)
J. Mol. Model.
, vol.18
, pp. 2227-2240
-
-
Treesuwan, W.1
Hirao, H.2
Morokuma, K.3
Hannongbua, S.4
-
64
-
-
84866518595
-
Catalytic Mechanism in Artificial Metalloenzyme: Qm/Mm Study of Phenylacetylene Polymerization by Rhodium Complex Encapsulated in Apo-Ferritin
-
Ke, Z.; Abe, S.; Ueno, T.; Morokuma, K. Catalytic Mechanism in Artificial Metalloenzyme: Qm/Mm Study of Phenylacetylene Polymerization by Rhodium Complex Encapsulated in Apo-Ferritin J. Am. Chem. Soc. 2012, 134, 15418-15429
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 15418-15429
-
-
Ke, Z.1
Abe, S.2
Ueno, T.3
Morokuma, K.4
-
65
-
-
84933063828
-
The ONIOM Method and Its Applications
-
Chung, L. W.; Sameera, W. M. C.; Ramozzi, R.; Page, A. J.; Hatanaka, M.; Petrova, G. P.; Harris, T. V.; Li, X.; Ke, Z.; Liu, F. The ONIOM Method and Its Applications Chem. Rev. 2015, 10.1021/cr5004419
-
(2015)
Chem. Rev.
-
-
Chung, L.W.1
Sameera, W.M.C.2
Ramozzi, R.3
Page, A.J.4
Hatanaka, M.5
Petrova, G.P.6
Harris, T.V.7
Li, X.8
Ke, Z.9
Liu, F.10
-
66
-
-
70450206724
-
-
revision A.02; Gaussian, Inc. Wallingford, CT
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Scalmani, G.; Barone, V.; Mennucci, B.; Petersson, G. A.; Gaussian 09, revision A.02; Gaussian, Inc.: Wallingford, CT, 2009.
-
(2009)
Gaussian 09
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Scalmani, G.7
Barone, V.8
Mennucci, B.9
Petersson, G.A.10
-
67
-
-
70450206724
-
-
revision C.01; Gaussian, Inc. Wallingford, CT
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Scalmani, G.; Barone, V.; Mennucci, B.; Petersson, G. A.; Gaussian 09, revision C.01; Gaussian, Inc.: Wallingford, CT, 2010.
-
(2010)
Gaussian 09
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Scalmani, G.7
Barone, V.8
Mennucci, B.9
Petersson, G.A.10
-
68
-
-
0004053611
-
-
3 rd ed. John Wiley & Sons: New Jersey
-
Voet, D.; Voet, J. G. Biochemistry, 3 rd ed.; John Wiley & Sons: New Jersey, 2004.
-
(2004)
Biochemistry
-
-
Voet, D.1
Voet, J.G.2
-
69
-
-
15844379169
-
Structure of a Repair Enzyme Interrogating Undamaged DNA Elucidates Recognition of Damaged DNA
-
Banerjee, A.; Yang, W.; Karplus, M.; Verdine, G. L. Structure of a Repair Enzyme Interrogating Undamaged DNA Elucidates Recognition of Damaged DNA Nature (London, U. K.) 2005, 434, 612-618
-
(2005)
Nature (London, U. K.)
, vol.434
, pp. 612-618
-
-
Banerjee, A.1
Yang, W.2
Karplus, M.3
Verdine, G.L.4
-
70
-
-
33748592810
-
Degrees of Difficulty of Water-Consuming Reactions in the Absence of Enzymes
-
Wolfenden, R. Degrees of Difficulty of Water-Consuming Reactions in the Absence of Enzymes Chem. Rev. 2006, 106, 3379-3396
-
(2006)
Chem. Rev.
, vol.106
, pp. 3379-3396
-
-
Wolfenden, R.1
-
71
-
-
0028934537
-
Crystal Structure and Mutational Analysis of Human Uracil-DNA Glycosylase: Structural Basis of Specificity and Catalysis
-
Mol, C. D.; Arvai, A. S.; Slupphaug, G.; Kavli, B.; Alseth, I.; Krokan, H. E.; Tainer, J. A. Crystal Structure and Mutational Analysis of Human Uracil-DNA Glycosylase: Structural Basis of Specificity and Catalysis Cell (Cambridge, MA, U. S.) 1995, 80, 869-878
-
(1995)
Cell (Cambridge, MA, U. S.)
, vol.80
, pp. 869-878
-
-
Mol, C.D.1
Arvai, A.S.2
Slupphaug, G.3
Kavli, B.4
Alseth, I.5
Krokan, H.E.6
Tainer, J.A.7
|