-
1
-
-
0033520969
-
Quality control by DNA repair
-
Lindahl, T. & Wood, R. D. Quality control by DNA repair. Science 286, 1897-1905 (1999).
-
(1999)
Science
, vol.286
, pp. 1897-1905
-
-
Lindahl, T.1
Wood, R.D.2
-
2
-
-
0030861915
-
DNA glycosylases in the base excision repair of DNA
-
Krokan, H.E., Standal, R. & Slupphaug, G. DNA glycosylases in the base excision repair of DNA. Biochem. J. 325, 1-16 (1997).
-
(1997)
Biochem. J.
, vol.325
, pp. 1-16
-
-
Krokan, H.E.1
Standal, R.2
Slupphaug, G.3
-
3
-
-
0035111895
-
Recent progress in the biology, chemistry and structural biology of DNA glycosylases
-
Schärer, O.D. & Jiricny, J. Recent progress in the biology, chemistry and structural biology of DNA glycosylases. Bioessays 23, 270-281 (2001).
-
(2001)
Bioessays
, vol.23
, pp. 270-281
-
-
Schärer, O.D.1
Jiricny, J.2
-
4
-
-
0028604549
-
Unified catalytic mechanism for DNA glycosylases
-
Dodson, M.L., Michaels, M.L. & Lloyd, R.S. Unified catalytic mechanism for DNA glycosylases. J. Biol. Chem. 269, 32709-32712 (1994).
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 32709-32712
-
-
Dodson, M.L.1
Michaels, M.L.2
Lloyd, R.S.3
-
6
-
-
0029132769
-
Studies on the catalytic mechanism of five DNA glycosylases. Probing for enzyme-DNA imino intermediates
-
Sun, B., Latham, K.A., Dodson, M.L. & Lloyd, R.S. Studies on the catalytic mechanism of five DNA glycosylases. Probing for enzyme-DNA imino intermediates. J. Biol. Chem. 270, 19501-19508 (1995).
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 19501-19508
-
-
Sun, B.1
Latham, K.A.2
Dodson, M.L.3
Lloyd, R.S.4
-
7
-
-
0030220956
-
Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily
-
Nash, H. M. et al. Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily. Curr. Biol. 6, 968-980 (1996).
-
(1996)
Curr. Biol.
, vol.6
, pp. 968-980
-
-
Nash, H.M.1
-
8
-
-
0032568337
-
Repair of oxidatively damaged guanine in Saccharomyces cerevisiae by an alternative pathway
-
Bruner, S.D., Nash, H.M., Lane, W.S. & Verdine, G.L. Repair of oxidatively damaged guanine in Saccharomyces cerevisiae by an alternative pathway. Curr. Biol. 8, 393-403 (1998).
-
(1998)
Curr. Biol.
, vol.8
, pp. 393-403
-
-
Bruner, S.D.1
Nash, H.M.2
Lane, W.S.3
Verdine, G.L.4
-
9
-
-
0028800939
-
Purification and cloning of Micrococcus luteus ultraviolet endonuclease, an N-glycosylase/abasic lyase that proceeds via an imino enzyme-DNA intermediate
-
Piersen, C.E., Prince, M.A., Augustine, M.L., Dodson, M.L. & Lloyd, R.S. Purification and cloning of Micrococcus luteus ultraviolet endonuclease, an N-glycosylase/abasic lyase that proceeds via an imino enzyme-DNA intermediate. J. Biol. Chem. 270, 23475-23484 (1995).
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 23475-23484
-
-
Piersen, C.E.1
Prince, M.A.2
Augustine, M.L.3
Dodson, M.L.4
Lloyd, R.S.5
-
10
-
-
0031239573
-
The critical active-site amine of the human 8-oxoguanine DNA glycosylase, hOgg1: Direct identification, ablation and chemical reconstitution
-
Nash, H.M., Lu, R., Lane, W.S. & Verdine, G.L. The critical active-site amine of the human 8-oxoguanine DNA glycosylase, hOgg1: direct identification, ablation and chemical reconstitution. Chem. Biol. 4, 693-702 (1997).
-
(1997)
Chem. Biol.
, vol.4
, pp. 693-702
-
-
Nash, H.M.1
Lu, R.2
Lane, W.S.3
Verdine, G.L.4
-
11
-
-
0030614471
-
2-terminal proline acts as a nucleophile in the glycosylase/AP-lyase reaction catalyzed by Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg) protein
-
2-terminal proline acts as a nucleophile in the glycosylase/AP-lyase reaction catalyzed by Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg) protein. J. Biol. Chem. 272, 5335-5341 (1997).
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 5335-5341
-
-
Zharkov, D.O.1
Rieger, R.A.2
Iden, C.R.3
Grollman, A.P.4
-
12
-
-
0031172802
-
A mammalian DNA repair enzyme that excises oxidatively damaged guanines maps to a locus frequently lost in lung cancer
-
Lu, R., Nash, H.M. & Verdine, G.L. A mammalian DNA repair enzyme that excises oxidatively damaged guanines maps to a locus frequently lost in lung cancer. Curr. Biol. 7, 397-407 (1997).
-
(1997)
Curr. Biol.
, vol.7
, pp. 397-407
-
-
Lu, R.1
Nash, H.M.2
Verdine, G.L.3
-
13
-
-
0030760240
-
Cloning of a human homolog of the yeast OGG1 gene that is involved in the repair of oxidative DNA damage
-
Arai, K. et al. Cloning of a human homolog of the yeast OGG1 gene that is involved in the repair of oxidative DNA damage. Oncogene 14, 2857-2861 (1997).
-
(1997)
Oncogene
, vol.14
, pp. 2857-2861
-
-
Arai, K.1
-
14
-
-
0030759824
-
Molecular cloning and functional expression of a human cDNA encoding the antimutator enzyme 8-hydroxyguanine-DNA glycosylase
-
Roldan-Arjona, T. et al. Molecular cloning and functional expression of a human cDNA encoding the antimutator enzyme 8-hydroxyguanine-DNA glycosylase. Proc. Natl. Acad. Sci. USA 94, 8016-8020 (1997).
-
(1997)
Proc. Natl. Acad. Sci USA
, vol.94
, pp. 8016-8020
-
-
Roldan-Arjona, T.1
-
15
-
-
0030703177
-
Opposite base-dependent reactions of a human base excision repair enzyme on DNA containing 7,8-dihydro-8-oxoguanine and abasic sites
-
Bjoras, M. et al. Opposite base-dependent reactions of a human base excision repair enzyme on DNA containing 7,8-dihydro-8-oxoguanine and abasic sites. EMBO J. 16, 6314-6322 (1997).
-
(1997)
EMBO J.
, vol.16
, pp. 6314-6322
-
-
Bjoras, M.1
-
16
-
-
0030738194
-
Cloning and characterization of a mammalian 8-oxoguanine DNA glycosylase
-
Rosenquist, T.A., Zharkov, D.O. & Grollman, A.P. Cloning and characterization of a mammalian 8-oxoguanine DNA glycosylase. Proc. Natl. Acad. Sci. USA 94, 7429-7434 (1997).
-
(1997)
Proc. Natl. Acad. Sci USA
, vol.94
, pp. 7429-7434
-
-
Rosenquist, T.A.1
Zharkov, D.O.2
Grollman, A.P.3
-
17
-
-
0030816108
-
Cloning and characterization of hOGG1, a human homolog of the OGG1 gene of Saccharomyces cerevisiae
-
Radicella, J.P., Dherin, C., Desmaze, C., Fox, M.S. & Boiteux, S. Cloning and characterization of hOGG1, a human homolog of the OGG1 gene of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 94, 8010-8015 (1997).
-
(1997)
Proc. Natl. Acad. Sci USA
, vol.94
, pp. 8010-8015
-
-
Radicella, J.P.1
Dherin, C.2
Desmaze, C.3
Fox, M.S.4
Boiteux, S.5
-
18
-
-
0030698057
-
Augmented expression of a human gene for 8-oxoguanine DNA glycosylase (MutM) in B lymphocytes of the dark zone in lymph node germinal centers
-
Kuo, F.C. & Sklar, J. Augmented expression of a human gene for 8-oxoguanine DNA glycosylase (MutM) in B lymphocytes of the dark zone in lymph node germinal centers. J. Exp. Med. 186, 1547-1556 (1997).
-
(1997)
J. Exp. Med.
, vol.186
, pp. 1547-1556
-
-
Kuo, F.C.1
Sklar, J.2
-
19
-
-
0030912695
-
Cloning and characterization of mammalian 8-hydroxyguanine-specific DNA glycosylase/apurinic, apyrimidinic lyase, a functional mutM homologue
-
Aburatani, H. et al. Cloning and characterization of mammalian 8-hydroxyguanine-specific DNA glycosylase/apurinic, apyrimidinic lyase, a functional mutM homologue. Cancer Res. 57, 2151-2156 (1997).
-
(1997)
Cancer Res.
, vol.57
, pp. 2151-2156
-
-
Aburatani, H.1
-
20
-
-
0034011261
-
Oxyradicals and DNA damage
-
Marnett, L.J. Oxyradicals and DNA damage. Carcinogenesis 21, 361-370 (2000).
-
(2000)
Carcinogenesis
, vol.21
, pp. 361-370
-
-
Marnett, L.J.1
-
21
-
-
0034708226
-
Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA
-
Bruner, S.D., Norman, D.P. & Verdine, G.L. Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA. Nature 403, 859-866 (2000).
-
(2000)
Nature
, vol.403
, pp. 859-866
-
-
Bruner, S.D.1
Norman, D.P.2
Verdine, G.L.3
-
22
-
-
0035900960
-
Coupling of substrate recognition and catalysis by a human base-excision DNA repair protein
-
Norman, D.P.G., Bruner, S.D. & Verdine, G.L. Coupling of substrate recognition and catalysis by a human base-excision DNA repair protein. J. Am. Chem. Soc. 123, 359-360 (2001).
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 359-360
-
-
Norman, D.P.G.1
Bruner, S.D.2
Verdine, G.L.3
-
23
-
-
0030602838
-
Structural basis for the excision repair of alkylation-damaged DNA
-
Labahn, J. et al. Structural basis for the excision repair of alkylation-damaged DNA. Cell 86, 321-329 (1996).
-
(1996)
Cell
, vol.86
, pp. 321-329
-
-
Labahn, J.1
-
24
-
-
0029119097
-
Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure
-
Thayer, M.M., Ahern, H., Xing, D., Cunningham, R.P. & Tainer, J.A. Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure. EMBO J. 14, 4108-4120 (1995).
-
(1995)
EMBO J.
, vol.14
, pp. 4108-4120
-
-
Thayer, M.M.1
Ahern, H.2
Xing, D.3
Cunningham, R.P.4
Tainer, J.A.5
-
25
-
-
0032877155
-
The active site of the Escherichia coli MutY DNA adenine glycosylase
-
Wright, P.M., Yu, J., Cillo, J. & Lu, A.L. The active site of the Escherichia coli MutY DNA adenine glycosylase. J. Biol. Chem. 274, 29011-29018 (1999).
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 29011-29018
-
-
Wright, P.M.1
Yu, J.2
Cillo, J.3
Lu, A.L.4
-
26
-
-
0037452513
-
Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase
-
advance online publication, 24 January (DOI 10.1021/bi 026823d)
-
Norman, D.P.G., Chung, S.J. & Verdine, G.L. Structural and biochemical exploration of a critical amino acid in human 8-oxoguanine glycosylase. Biochemistry, advance online publication, 24 January 2003 (DOI 10.1021/bi026823d).
-
(2003)
Biochemistry
-
-
Norman, D.P.G.1
Chung, S.J.2
Verdine, G.L.3
-
27
-
-
0034651873
-
DNA bending and a flip-out mechanism for base excision by the helix-hairpin-helix DNA glycosylase, Escherichia coli AlkA
-
Hollis, T., Ichikawa, Y. & Ellenberger, T. DNA bending and a flip-out mechanism for base excision by the helix-hairpin-helix DNA glycosylase, Escherichia coli AlkA. EMBO J. 19, 758-766 (2000).
-
(2000)
EMBO J.
, vol.19
, pp. 758-766
-
-
Hollis, T.1
Ichikawa, Y.2
Ellenberger, T.3
-
28
-
-
0034666313
-
Substrate specificity and reaction mechanism of murine 8-oxoguanine-DNA glycosylase
-
Zharkov, D.O., Rosenquist, T.A., Gerchman, S.E. & Grollman, A.P. Substrate specificity and reaction mechanism of murine 8-oxoguanine-DNA glycosylase. J. Biol. Chem. 275, 28607-28617 (2000).
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 28607-28617
-
-
Zharkov, D.O.1
Rosenquist, T.A.2
Gerchman, S.E.3
Grollman, A.P.4
-
29
-
-
0026101901
-
Stereochemical studies of the β-elimination reactions at aldehydic abasic sites in DNA: Endonuclease III from Escherichia coli, sodium hydroxide, and Lys-Trp-Lys
-
Mazumder, A. et al. Stereochemical studies of the β-elimination reactions at aldehydic abasic sites in DNA: endonuclease III from Escherichia coli, sodium hydroxide, and Lys-Trp-Lys. Biochemistry 30, 1119-1126 (1991).
-
(1991)
Biochemistry
, vol.30
, pp. 1119-1126
-
-
Mazumder, A.1
-
31
-
-
0034090941
-
NMR evidence for an unusually low N1 pKa for uracil bound to uracil DNA glycosylase: Implications for catalysis
-
Drohat, A.C. & Stivers, J.T. NMR evidence for an unusually low N1 pKa for uracil bound to uracil DNA glycosylase: implications for catalysis. J. Am. Chem. Soc. 122, 1840-1841 (2000).
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 1840-1841
-
-
Drohat, A.C.1
Stivers, J.T.2
-
32
-
-
0033957143
-
Substrate-assisted catalysis: Molecular basis and biological significance
-
Dall'Acqua, W. & Carter, P. Substrate-assisted catalysis: molecular basis and biological significance. Protein Sci. 9, 1-9 (2000).
-
(2000)
Protein Sci.
, vol.9
, pp. 1-9
-
-
Dall'Acqua, W.1
Carter, P.2
-
33
-
-
0024517021
-
Dehydroquinate synthase: A sheep in wolf's clothing?
-
Widlanski, T.S., Bender, S.L. & Knowles, J.R. Dehydroquinate synthase: a sheep in wolf's clothing? J. Am. Chem. Soc. 111, 2299-2300 (1989).
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 2299-2300
-
-
Widlanski, T.S.1
Bender, S.L.2
Knowles, J.R.3
-
34
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. & Minor, W.M. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1997).
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.M.2
-
35
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A.T. et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D 54, 905-921 (1998).
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
-
36
-
-
0034605562
-
Recombinant Lactobacillus leichmannii ribonucleosidetriphosphate reductase as a biocatalyst in the preparative synthesis of 2′-deoxyribonudeoside-5′-triphosphates
-
Brunella, A. & Ghisalba, O. Recombinant Lactobacillus leichmannii ribonucleosidetriphosphate reductase as a biocatalyst in the preparative synthesis of 2′-deoxyribonudeoside-5′-triphosphates. J. Mol. Cat. B Enzym. 10, 215-222 (2000).
-
(2000)
J. Mol. Cat. B Enzym.
, vol.10
, pp. 215-222
-
-
Brunella, A.1
Ghisalba, O.2
-
37
-
-
0024250301
-
Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison
-
Brunger, A.T. & Karplus, M. Polar hydrogen positions in proteins: empirical energy placement and neutron diffraction comparison. Proteins 4, 14B1-1456 (1988).
-
(1988)
Proteins
, vol.4
-
-
Brunger, A.T.1
Karplus, M.2
-
38
-
-
0031076776
-
pH-dependence of protein stability: Absolute electrostatic free energy differences between conformations
-
Schaefer, M., Sommer, M. & Karplus, M. pH-dependence of protein stability: absolute electrostatic free energy differences between conformations. J. Phys. Chem. B 101, 1663-1683 (1997).
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 1663-1683
-
-
Schaefer, M.1
Sommer, M.2
Karplus, M.3
-
39
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell, A.D. Jr. et al. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B 102, 3586-3616 (1998).
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell A.D., Jr.1
-
40
-
-
3042524904
-
A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: The RESP model
-
Bayly, C.I., Cieplak, P., Cornell, W. & Kollman, P.A. A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model. J. Phys. Chem. 97, 10269-10280 (1993).
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 10269-10280
-
-
Bayly, C.I.1
Cieplak, P.2
Cornell, W.3
Kollman, P.A.4
-
41
-
-
0022068152
-
Active site dynamics in protein molecules: A stochastic boundary molecular-dynamics approach
-
Brooks, C.L. III, Brunger, A.T. & Karplus, M. Active site dynamics in protein molecules: a stochastic boundary molecular-dynamics approach. Biopolymers 24, 843-865 (1985).
-
(1985)
Biopolymers
, vol.24
, pp. 843-865
-
-
Brooks C.L. III1
Brunger, A.T.2
Karplus, M.3
-
42
-
-
0031561292
-
Continuum treatment of long-range interactions in free energy calculations. Application to protein-ligand binding
-
Simonson, T., Archontis, G. & Karplus, M. Continuum treatment of long-range interactions in free energy calculations. Application to protein-ligand binding. J. Phys. Chem. B 101, 8347-8360 (1997).
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 8347-8360
-
-
Simonson, T.1
Archontis, G.2
Karplus, M.3
-
43
-
-
36749119973
-
Deformable stochastic boundaries in molecular dynamics
-
Brooks, C. L. III & Karplus, M. Deformable stochastic boundaries in molecular dynamics. J. Chem. Phys. 79, 6312-6325 (1983).
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 6312-6325
-
-
Brooks C.L. III1
Karplus, M.2
-
44
-
-
0000012952
-
On the treatment of electrostatic interactions in biomolecular simulation
-
Stote, R.H., States, D.J. & Karplus, M. On the treatment of electrostatic interactions in biomolecular simulation. J. Chim. Phys. Phys.-Chim. Biol. 88, 2419-2433 (1991).
-
(1991)
J. Chim. Phys. Phys.-Chim. Biol.
, vol.88
, pp. 2419-2433
-
-
Stote, R.H.1
States, D.J.2
Karplus, M.3
-
45
-
-
84986534166
-
New spherical-cutoff methods for long-range forces in macromolecular simulation
-
Steinbach, P.J. & Brooks, B.R. New spherical-cutoff methods for long-range forces in macromolecular simulation. J. Comput. Chem. 15, 667-683 (1994).
-
(1994)
J. Comput. Chem.
, vol.15
, pp. 667-683
-
-
Steinbach, P.J.1
Brooks, B.R.2
-
46
-
-
84986519238
-
The weighted histogram analysis method for free-energy calculations on biomolecules. I. The method
-
Kumar, S., Bouzida, D., Swendsen, R.H., Kollman, P.A. & Rosenberg, J.M. The weighted histogram analysis method for free-energy calculations on biomolecules. I. The method. J. Comput. Chem. 13, 1011-1021 (1992).
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 1011-1021
-
-
Kumar, S.1
Bouzida, D.2
Swendsen, R.H.3
Kollman, P.A.4
Rosenberg, J.M.5
-
47
-
-
0000387235
-
A rapidly convergent descent method for minimization
-
Fletcher, R. & Powell, M.J.D. A rapidly convergent descent method for minimization. Comput. J. 6, 163 (1963).
-
(1963)
Comput. J.
, vol.6
, pp. 163
-
-
Fletcher, R.1
Powell, M.J.D.2
-
48
-
-
84944812409
-
Improved Fourier coefficients for maps using phases from partial structures with errors
-
Read, R.J. Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Crystallogr. A 42, 104-149 (1986).
-
(1986)
Acta Crystallogr. A
, vol.42
, pp. 104-149
-
-
Read, R.J.1
|