메뉴 건너뛰기




Volumn 9789400759312, Issue , 2013, Pages 387-411

Antibiotic resistance gene pool and bacterial adaptation to xenobiotics in the environment

Author keywords

Adaptation; Antibiotics; Environmental stress; Mutation; Xenobiotics

Indexed keywords


EID: 84931475945     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-94-007-5931-2_15     Document Type: Chapter
Times cited : (1)

References (161)
  • 1
    • 33750738577 scopus 로고    scopus 로고
    • Antimicrobial resistance at farm level
    • Acar JF, Moulin G. (2006). Antimicrobial resistance at farm level. Rev Sci Technol 25: 775-792
    • (2006) Rev Sci Technol , vol.25 , pp. 775-792
    • Acar, J.F.1    Moulin, G.2
  • 2
    • 33947260230 scopus 로고    scopus 로고
    • Molecular mechanisms of antibacterial multidrug resistance
    • Alekshun MN, Levy SB. (2007). Molecular mechanisms of antibacterial multidrug resistance. Cell 128: 1037-1050
    • (2007) Cell , vol.128 , pp. 1037-1050
    • Alekshun, M.N.1    Levy, S.B.2
  • 3
    • 33751429178 scopus 로고    scopus 로고
    • The evolution of two-component systems in bacteria reveals different strategies for niche adaptation
    • Alm E, Huang K, Arkin A. (2006). The evolution of two-component systems in bacteria reveals different strategies for niche adaptation. PLoS Comput Biol 2 (11): e143
    • (2006) Plos Comput Biol , vol.2 , Issue.11 , pp. e143
    • Alm, E.1    Huang, K.2    Arkin, A.3
  • 6
    • 21144441817 scopus 로고    scopus 로고
    • Lateral gene transfer in eukaryotes
    • Andersson JO. (2005). Lateral gene transfer in eukaryotes. Cell Mol Life Sci 62: 1182-1197
    • (2005) Cell Mol Life Sci , vol.62 , pp. 1182-1197
    • Andersson, J.O.1
  • 7
    • 0037458124 scopus 로고    scopus 로고
    • Phylogenetic analysis of diplomonad genes reveals frequent lateral gene transfer affecting eukaryotes
    • Andersson JO, Sjogren AM, Davis LAM, Embley TM, Roger AJ. (2003). Phylogenetic analysis of diplomonad genes reveals frequent lateral gene transfer affecting eukaryotes. Curr Biol 13: 94-104
    • (2003) Curr Biol , vol.13 , pp. 94-104
    • Andersson, J.O.1    Sjogren, A.M.2    Davis, L.A.M.3    Embley, T.M.4    Roger, A.J.5
  • 8
    • 44249084193 scopus 로고    scopus 로고
    • Conjugative plasmids in multi-resistant bacterial isolates from Indian soil
    • Ansari MI, Grohmann E, Malik A. (2008). Conjugative plasmids in multi-resistant bacterial isolates from Indian soil. J Appl Microbiol 104: 1774-1781
    • (2008) J Appl Microbiol , vol.104 , pp. 1774-1781
    • Ansari, M.I.1    Grohmann, E.2    Malik, A.3
  • 9
    • 0024093037 scopus 로고
    • Comparison of the meta pathway operons on NAH plasmids pWW60-22 and TOL plasmid pWW53-4 and its evolutionary significance
    • Assinder SJ, Williams PA. (1988). Comparison of the meta pathway operons on NAH plasmids pWW60-22 and TOL plasmid pWW53-4 and its evolutionary significance. J Gen Microbiol 134: 2769-2778
    • (1988) J Gen Microbiol , vol.134 , pp. 2769-2778
    • Assinder, S.J.1    Williams, P.A.2
  • 10
    • 0025005226 scopus 로고
    • The TOL plasmids: Determinants of the catabolism of toluene and the xylenes
    • Assinder SJ, Williams PA. (1990). The TOL plasmids: determinants of the catabolism of toluene and the xylenes. Adv Microb Physiol 31: 1-69
    • (1990) Adv Microb Physiol , vol.31 , pp. 1-69
    • Assinder, S.J.1    Williams, P.A.2
  • 13
    • 70849111236 scopus 로고    scopus 로고
    • Microbial community structure in hexadecane- and naphthalene-enriched gas station soil
    • Baek KH, Kim HS. (2009). Microbial community structure in hexadecane- and naphthalene-enriched gas station soil. J Microbiol Biotechnol 19: 651-657
    • (2009) J Microbiol Biotechnol , vol.19 , pp. 651-657
    • Baek, K.H.1    Kim, H.S.2
  • 14
    • 67649379043 scopus 로고    scopus 로고
    • Monitoring bacterial population dynamics using real-time PCR during the bioremediation of crude-oil-contaminated soil
    • Baek KH, Yoon BD, Cho DH, Kim BH, Oh HM, Kim HS. (2009). Monitoring bacterial population dynamics using real-time PCR during the bioremediation of crude-oil-contaminated soil. J Microbiol Biotechnol 19: 339-345
    • (2009) J Microbiol Biotechnol , vol.19 , pp. 339-345
    • Baek, K.H.1    Yoon, B.D.2    Cho, D.H.3    Kim, B.H.4    Oh, H.M.5    Kim, H.S.6
  • 15
    • 38349128272 scopus 로고    scopus 로고
    • Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny
    • Bapteste E, Susko E, Leigh J, Ruiz-Trillo I, Bucknam J, Doolittle WF. (2008). Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny. Mol Biol Evol 25: 83-91
    • (2008) Mol Biol Evol , vol.25 , pp. 83-91
    • Bapteste, E.1    Susko, E.2    Leigh, J.3    Ruiz-Trillo, I.4    Bucknam, J.5    Doolittle, W.F.6
  • 16
    • 0039229975 scopus 로고    scopus 로고
    • Evolution of antibiotic resistance
    • Baquero F, Blazquez J. (1997). Evolution of antibiotic resistance. Tree 12 (12): 482-487
    • (1997) Tree , vol.12 , Issue.12 , pp. 482-487
    • Baquero, F.1    Blazquez, J.2
  • 18
    • 0024020723 scopus 로고
    • Adaptation of aquatic microbial communities to pollutant stress
    • Barkay T, Pritchard H. (1988). Adaptation of aquatic microbial communities to pollutant stress. Microbiol Sci 5: 165-169
    • (1988) Microbiol Sci , vol.5 , pp. 165-169
    • Barkay, T.1    Pritchard, H.2
  • 19
    • 33644859122 scopus 로고    scopus 로고
    • Effects of endogenous substrates on adaptation of anaerobic microbial communities to 3-chlorobenzoate
    • Becker JG, Berardesco G, Rittmann BE, Stahl DA. (2006). Effects of endogenous substrates on adaptation of anaerobic microbial communities to 3-chlorobenzoate. Appl Environ Microbiol 72 (1): 449-456
    • (2006) Appl Environ Microbiol , vol.72 , Issue.1 , pp. 449-456
    • Becker, J.G.1    Berardesco, G.2    Rittmann, B.E.3    Stahl, D.A.4
  • 20
    • 79953231153 scopus 로고    scopus 로고
    • High-throughput screening of microbial adaptation to environmental stress
    • Belanger PA, Beaudin J, Roy S. (2011). High-throughput screening of microbial adaptation to environmental stress. J Microbiol Methods 85: 92-97
    • (2011) J Microbiol Methods , vol.85 , pp. 92-97
    • Belanger, P.A.1    Beaudin, J.2    Roy, S.3
  • 22
    • 0242711908 scopus 로고
    • Aminoglycoside antibiotic-inactivating enzymes in actinomycetes similar to those present in clinical isolates of antibiotic-resistant bacteria
    • Benveniste R, Davies J. (1973). Aminoglycoside antibiotic-inactivating enzymes in actinomycetes similar to those present in clinical isolates of antibiotic-resistant bacteria. Proc Natl Acad Sci 70: 2276-2280
    • (1973) Proc Natl Acad Sci , vol.70 , pp. 2276-2280
    • Benveniste, R.1    Davies, J.2
  • 23
    • 85193184760 scopus 로고    scopus 로고
    • Bioremediation
    • Prentice Hall Publishers Upper Saddle River
    • Black JG. (1999). Bioremediation. In: Microbiology: principles and explorations. Prentice Hall Publishers, Upper Saddle River, pp 751-752
    • (1999) Microbiology: Principles and Explorations , pp. 751-752
    • Black, J.G.1
  • 24
    • 44449140116 scopus 로고    scopus 로고
    • Confusing kinships
    • Bohannon J. (2008). Confusing kinships. Science 320: 1031-1033
    • (2008) Science , vol.320 , pp. 1031-1033
    • Bohannon, J.1
  • 25
    • 77950195231 scopus 로고    scopus 로고
    • Horizontal gene transfer in evolution: Facts and challenges
    • Boto L. (2010). Horizontal gene transfer in evolution: facts and challenges. Proc R Soc B 277: 819-827
    • (2010) Proc R Soc B , vol.277 , pp. 819-827
    • Boto, L.1
  • 26
    • 56349169406 scopus 로고    scopus 로고
    • Accounting for horizontal gene transfers explains con fl icting hypotheses regarding the position of aqui fi cales in the phylogeny of bacteria
    • Boussau B, Gueguen L, Gouy M. (2008). Accounting for horizontal gene transfers explains con fl icting hypotheses regarding the position of aqui fi cales in the phylogeny of Bacteria. BMC Evol Biol 8: 272
    • (2008) BMC Evol Biol , vol.8 , pp. 272
    • Boussau, B.1    Gueguen, L.2    Gouy, M.3
  • 27
    • 0037306453 scopus 로고    scopus 로고
    • Ancient horizontal gene transfer
    • Brown J. (2003). Ancient horizontal gene transfer. Nat Rev Genet 4: 121-132
    • (2003) Nat Rev Genet , vol.4 , pp. 121-132
    • Brown, J.1
  • 29
    • 15244353368 scopus 로고    scopus 로고
    • Isolation and characterization of symbiotically effective rhizobium resistant to arsenic and heavy metals after the toxic spill at the aznalcollar pyrite mine
    • Carrasco JA, Armario P, Pajuelo E, Burgos A, Caviedes MA, Lopez R, Chamber MA, Palomares AJ. (2005). Isolation and characterization of symbiotically effective Rhizobium resistant to arsenic and heavy metals after the toxic spill at the Aznalcollar pyrite mine. Soil Biol Biochem 37: 1131-1140
    • (2005) Soil Biol Biochem , vol.37 , pp. 1131-1140
    • Carrasco, J.A.1    Armario, P.2    Pajuelo, E.3    Burgos, A.4    Caviedes, M.A.5    Lopez, R.6    Chamber, M.A.7    Palomares, A.J.8
  • 30
    • 46149104377 scopus 로고    scopus 로고
    • Evo-devo and expanding evolutionary synthesis A genetic theory of morphological evolution
    • Carroll SB. (2008). Evo-devo and expanding evolutionary synthesis A genetic theory of morphological evolution. Cell 134: 25-36
    • (2008) Cell , vol.134 , pp. 25-36
    • Carroll, S.B.1
  • 31
    • 0030840719 scopus 로고    scopus 로고
    • Effectiveness and genetic diversity of rhizobium leguminosarum bv trifolii isolates in portuguese soils polluted by industrial effluents
    • Castro IV, Ferreira EM, McGrath SP. (1997). Effectiveness and genetic diversity of Rhizobium leguminosarum bv trifolii isolates in Portuguese soils polluted by industrial effluents. Soil Biol Biochem 29: 1209-1213
    • (1997) Soil Biol Biochem , vol.29 , pp. 1209-1213
    • Castro, I.V.1    Ferreira, E.M.2    McGrath, S.P.3
  • 32
    • 0022974415 scopus 로고
    • Naturally occurring tol plasmids in pseudomonas strains carry either two homologous or two nonhomologous catechol 23-oxygenase genes
    • Chat field LK, Williams PA. (1986). Naturally occurring TOL plasmids in Pseudomonas strains carry either two homologous or two nonhomologous catechol 23-oxygenase genes. J Bacteriol 168: 878-885
    • (1986) J Bacteriol , vol.168 , pp. 878-885
    • Chatfield, L.K.1    Williams, P.A.2
  • 33
    • 0026035006 scopus 로고
    • Biodegradation of halogenated organic compounds
    • Chaudhry GR, Chapalamadugu S. (1991). Biodegradation of halogenated organic compounds. Microbiol Rev 55: 59-79
    • (1991) Microbiol Rev , vol.55 , pp. 59-79
    • Chaudhry, G.R.1    Chapalamadugu, S.2
  • 34
    • 34248396432 scopus 로고    scopus 로고
    • Global extent of horizontal gene transfer
    • Choi IG, Kim SH. (2007). Global extent of horizontal gene transfer. Proc Natl Acad Sci 104: 4489-4494
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 4489-4494
    • Choi, I.G.1    Kim, S.H.2
  • 35
    • 79952573281 scopus 로고
    • The evolution of degradative pathways
    • Gibson DT (ed) Marcel Dekker Inc, New York
    • Clarke PH. (1984). The evolution of degradative pathways. In: Gibson DT (ed) Microbial degradation of organic compounds. Marcel Dekker Inc, New York, pp 11-27
    • (1984) Microbial Degradation of Organic Compounds , pp. 11-27
    • Clarke, P.H.1
  • 36
    • 0034213801 scopus 로고    scopus 로고
    • Evolution of ametabolic pathway for degradation of a toxic xenobiotic: The patchwork approach
    • Copley SD. (2000). Evolution of ametabolic pathway for degradation of a toxic xenobiotic: the patchwork approach. Trends Biochem Sci 25: 261-265
    • (2000) Trends Biochem Sci , vol.25 , pp. 261-265
    • Copley, S.D.1
  • 38
    • 35748929920 scopus 로고    scopus 로고
    • Expanding the soil antibiotic resistome: Exploring environmental diversity
    • D'Costa VM, Grif fi ths E, Wright GD. (2007). Expanding the soil antibiotic resistome: exploring environmental diversity. Curr Opin Microbiol 10: 481-489
    • (2007) Curr Opin Microbiol , vol.10 , pp. 481-489
    • D'costa, V.M.1    Griffiths, E.2    Wright, G.D.3
  • 39
    • 48249151749 scopus 로고    scopus 로고
    • Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
    • Dagan T, Artzy-Randrup Y, Martin W. (2008). Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc Natl Acad Sci 105: 10039-10044
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 10039-10044
    • Dagan, T.1    Artzy-Randrup, Y.2    Martin, W.3
  • 41
    • 3042569657 scopus 로고    scopus 로고
    • Bacterial genomes as new gene homes: The genealogy of orfans in e coli
    • Daubin V, Ochman H. (2004). Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli. Genome Res 14: 1036-1042
    • (2004) Genome Res , vol.14 , pp. 1036-1042
    • Daubin, V.1    Ochman, H.2
  • 42
    • 0034443286 scopus 로고    scopus 로고
    • Microbial bio films: From ecology to molecular genetics
    • Davey ME, O'toole GA. (2000). Microbial bio films: from ecology to molecular genetics. Microbiol Mol Biol Rev 64 (4): 847-867
    • (2000) Microbiol Mol Biol Rev , vol.64 , Issue.4 , pp. 847-867
    • Davey, M.E.1    O'toole, G.A.2
  • 43
    • 0026672360 scopus 로고
    • Another look at antibiotic resistance
    • Davies J. (1992). Another look at antibiotic resistance. J Gen Microbiol 138: 1553-1559
    • (1992) J Gen Microbiol , vol.138 , pp. 1553-1559
    • Davies, J.1
  • 44
    • 77957980707 scopus 로고    scopus 로고
    • Origins and evolution of antibiotic resistance
    • Davies J, Davies D. (2010). Origins and evolution of antibiotic resistance. Microbiol Mol Biol Rev 74 (3): 417-433
    • (2010) Microbiol Mol Biol Rev , vol.74 , Issue.3 , pp. 417-433
    • Davies, J.1    Davies, D.2
  • 45
    • 33745468611 scopus 로고    scopus 로고
    • Metal and antibiotic-resistance in psychrotrophic bacteria from antarctic marine waters
    • De Souza MJ, Nair S, Loka Bharathi PA, Chandramohan D. (2006). Metal and antibiotic-resistance in psychrotrophic bacteria from Antarctic Marine waters. Ecotoxicology 15: 379-384
    • (2006) Ecotoxicology , vol.15 , pp. 379-384
    • De Souza, M.J.1    Nair, S.2    Loka Bharathi, P.A.3    Chandramohan, D.4
  • 46
    • 34548018528 scopus 로고    scopus 로고
    • Mechanistic approaches to the study of evolution: The functional synthesis
    • Dean AM, Thornton JW. (2007). Mechanistic approaches to the study of evolution: the functional synthesis. Nat Rev Genet 8: 1604-1607
    • (2007) Nat Rev Genet , vol.8 , pp. 1604-1607
    • Dean, A.M.1    Thornton, J.W.2
  • 47
    • 0019511050 scopus 로고
    • Properties of six pesticide degradation plasmids isolated from alcaligenes paradoxus and alcaligenes eutrophus
    • Don RH, Pemberton JM. (1981). Properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophus. J Bacteriol 145: 681-686
    • (1981) J Bacteriol , vol.145 , pp. 681-686
    • Don, R.H.1    Pemberton, J.M.2
  • 48
    • 0022003968 scopus 로고
    • Transposon mutagenesis and cloning analysis of the pathways for degradation of 24-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134 (pJP4
    • Don RH, Weightman AJ, Knackmuss HJ, Timmis KN. (1985). Transposon mutagenesis and cloning analysis of the pathways for degradation of 24-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134 (pJP4). J Bacteriol 161: 85-90
    • (1985) J Bacteriol , vol.161 , pp. 85-90
    • Don, R.H.1    Weightman, A.J.2    Knackmuss, H.J.3    Timmis, K.N.4
  • 49
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle WF. (1999). Phylogenetic classification and the universal tree. Science 284: 2124-2128
    • (1999) Science , vol.284 , pp. 2124-2128
    • Doolittle, W.F.1
  • 50
    • 33847790997 scopus 로고    scopus 로고
    • Pattern pluralism and the tree of life hypothesis
    • Doolittle WF, Bapteste E. (2007). Pattern pluralism and the tree of life hypothesis. Proc Natl Acad Sci 104: 2043-2049
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 2043-2049
    • Doolittle, W.F.1    Bapteste, E.2
  • 51
    • 0032510454 scopus 로고    scopus 로고
    • Do archaea have a mixed heritage?
    • Doolittle WF, Logsdon JM Jr. (1998). Do archaea have a mixed heritage?. Curr Biol 8: R209-R211
    • (1998) Curr Biol , vol.8 , pp. R209-R211
    • Doolittle, W.F.1    Logsdon, J.M.2
  • 52
    • 0034469149 scopus 로고    scopus 로고
    • Enrichment and molecular characterization of a bacterial culture that degrades methoxy-methyl urea herbicides and their aniline derivatives
    • El-Fantroussi S. (2000). Enrichment and molecular characterization of a bacterial culture that degrades methoxy-methyl urea herbicides and their aniline derivatives. Appl Environ Microbiol 66 (12): 5110-5115
    • (2000) Appl Environ Microbiol , vol.66 , Issue.12 , pp. 5110-5115
    • El-Fantroussi, S.1
  • 54
    • 0033517997 scopus 로고    scopus 로고
    • Lessons from the Aeropyrum pernix genome
    • Faguy DM, Doolittle WF. (1999). Lessons from the Aeropyrum pernix genome. Curr Biol 9: R883-R886
    • (1999) Curr Biol , vol.9 , pp. R883-R886
    • Faguy, D.M.1    Doolittle, W.F.2
  • 56
    • 0344856525 scopus 로고
    • Adaptive mutation
    • Baumberg S, Young JPW, Wellington EMH, Saunders JR (eds) Cambridge University Press, Cambridge
    • Foster P. (1995). Adaptive mutation. In: Baumberg S, Young JPW, Wellington EMH, Saunders JR (eds) Population genetics of bacteria. Cambridge University Press, Cambridge, pp 13-30
    • (1995) Population Genetics of Bacteria , pp. 13-30
    • Foster, P.1
  • 57
    • 0026501520 scopus 로고
    • Involvement of a chlorobenzoate catabolic transposon Tn5271 in community adaptation to chlorobiphenyl chloroaniline and 2, 4 dichlorophenoxyacetic acid in a freshwater ecosystem
    • Fulthorpe RR, Wyndham RC. (1992). Involvement of a chlorobenzoate catabolic transposon Tn5271 in community adaptation to chlorobiphenyl chloroaniline and 2, 4 dichlorophenoxyacetic acid in a freshwater ecosystem. Appl Environ Microbiol 58: 314-325
    • (1992) Appl Environ Microbiol , vol.58 , pp. 314-325
    • Fulthorpe, R.R.1    Wyndham, R.C.2
  • 59
    • 23944523895 scopus 로고    scopus 로고
    • A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ extroverts and introverts
    • Galperin MY. (2005). A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ extroverts and introverts. BMC Microbiol 5: 35
    • (2005) BMC Microbiol , vol.5 , pp. 35
    • Galperin, M.Y.1
  • 60
    • 26444580130 scopus 로고    scopus 로고
    • The cobweb of life revealed by genome scale estimates of horizontal gene transfer
    • Ge F, Wang LS, Kim J. (2005). The cobweb of life revealed by genome scale estimates of horizontal gene transfer. PLoS Biol 3: e316
    • (2005) Plos Biol , vol.3 , pp. e316
    • Ge, F.1    Wang, L.S.2    Kim, J.3
  • 62
    • 2042507722 scopus 로고    scopus 로고
    • Have archaeal genes contributed to bacterial virulence?
    • Gophna U, Charlebois RL, Doolittle WF. (2004). Have archaeal genes contributed to bacterial virulence?. Trends Microbiol 12: 213-219
    • (2004) Trends Microbiol , vol.12 , pp. 213-219
    • Gophna, U.1    Charlebois, R.L.2    Doolittle, W.F.3
  • 63
    • 0017109047 scopus 로고
    • The production and role of antibiotics in soil
    • Gottlieb D. (1976). The production and role of antibiotics in soil. J Antibiot (Tokyo) 29: 987-1000
    • (1976) J Antibiot (Tokyo , vol.29 , pp. 987-1000
    • Gottlieb, D.1
  • 65
    • 10344227692 scopus 로고    scopus 로고
    • Metagenomics: Application of genomics to uncultured microorganisms
    • Handelsman J. (2004). Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68: 669-685
    • (2004) Microbiol Mol Biol Rev , vol.68 , pp. 669-685
    • Handelsman, J.1
  • 66
    • 84866919992 scopus 로고    scopus 로고
    • Plasmids foster diversi fication and adaptation of bacterial populations in soil
    • Heuer H, Smalla K. (2012). Plasmids foster diversi fication and adaptation of bacterial populations in soil. FEMS Microbiol Rev. doi: 10.1111/j.1574-6976.2012.00337.x
    • (2012) Fems Microbiol Rev
    • Heuer, H.1    Smalla, K.2
  • 67
    • 36549029848 scopus 로고    scopus 로고
    • Characterization and modeling of the Haemophilus in fl uenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains
    • Hogg JS, Hu FZ, Janto B, Boissy R, Hayes J, Keefe R, Post JC, Ehrlich GD. (2007). Characterization and modeling of the Haemophilus in fl uenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains. Genome Biol 8: R103
    • (2007) Genome Biol , vol.8 , pp. R103
    • Hogg, J.S.1    Hu, F.Z.2    Janto, B.3    Boissy, R.4    Hayes, J.5    Keefe, R.6    Post, J.C.7    Ehrlich, G.D.8
  • 68
    • 0023866522 scopus 로고
    • DNA probe method for the detection of specific microorganisms in the soil bacterial community
    • Holben WE, Jansson JK, Chelm BK, Tiedje JM. (1988). DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl Environ Microbiol 54: 703-711
    • (1988) Appl Environ Microbiol , vol.54 , pp. 703-711
    • Holben, W.E.1    Jansson, J.K.2    Chelm, B.K.3    Tiedje, J.M.4
  • 69
    • 33847095513 scopus 로고    scopus 로고
    • Characterization of integrons and tetracycline resistance determinants in aeromonas spp isolated from south african aquaculture systems
    • Jacobs L, Chenia HY. (2007). Characterization of integrons and tetracycline resistance determinants in Aeromonas spp. isolated from South African aquaculture systems. Int J Food Microbiol 114: 295-306
    • (2007) Int J Food Microbiol , vol.114 , pp. 295-306
    • Jacobs, L.1    Chenia, H.Y.2
  • 70
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Jain R, Rivera MC, Lake JA. (1999). Horizontal gene transfer among genomes: the complexity hypothesis. Proc Natl Acad Sci 96: 3801-3806
    • (1999) Proc Natl Acad Sci , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 71
    • 61849087789 scopus 로고    scopus 로고
    • Horizontal gene transfer in prokaryotes shows differential preferences for metabolic and translational genes
    • Kanhere A, Vingron M. (2009). Horizontal gene transfer in prokaryotes shows differential preferences for metabolic and translational genes. BMC Evol Biol 9: 9
    • (2009) BMC Evol Biol , vol.9 , pp. 9
    • Kanhere, A.1    Vingron, M.2
  • 72
    • 0035432965 scopus 로고    scopus 로고
    • Molecular cloning nucleotide sequence and expression of genes encoding a polycyclic ring dioxygenase from mycobacterium sp strain pyr-1
    • Khan AA, Wang RF, Cao WW, Doerge DR, Wennerstrom D, Cerniglia CE. (2001). Molecular cloning nucleotide sequence and expression of genes encoding a polycyclic ring dioxygenase from Mycobacterium sp. strain PYR-1. Appl Environ Microbiol 67: 3577-3585
    • (2001) Appl Environ Microbiol , vol.67 , pp. 3577-3585
    • Khan, A.A.1    Wang, R.F.2    Cao, W.W.3    Doerge, D.R.4    Wennerstrom, D.5    Cerniglia, C.E.6
  • 73
    • 62549132572 scopus 로고    scopus 로고
    • Darwinian evolution in the light of genomics
    • Koonin EV. (2009). Darwinian evolution in the light of genomics. Nucleic Acids Res 37: 1011-1034
    • (2009) Nucleic Acids Res , vol.37 , pp. 1011-1034
    • Koonin, E.V.1
  • 74
    • 57549115252 scopus 로고    scopus 로고
    • The fate of new bacterial genes
    • Kuo CH, Ochman H. (2009). The fate of new bacterial genes. FEMS Microbiol Rev 33: 38-43
    • (2009) Fems Microbiol Rev , vol.33 , pp. 38-43
    • Kuo, C.H.1    Ochman, H.2
  • 75
    • 23044437168 scopus 로고    scopus 로고
    • What tangled web: Barriers to rampant horizontal gene transfer
    • Kurland CG. (2005). What tangled web: barriers to rampant horizontal gene transfer. Bioessays 27: 741-747
    • (2005) Bioessays , vol.27 , pp. 741-747
    • Kurland, C.G.1
  • 77
    • 61349194462 scopus 로고    scopus 로고
    • Estimating the size of the bacterial pan-genome
    • Lapierre P, Gogarten JP. (2009). Estimating the size of the bacterial pan-genome. Trends Genet 25: 107-110
    • (2009) Trends Genet , vol.25 , pp. 107-110
    • Lapierre, P.1    Gogarten, J.P.2
  • 78
    • 20444371027 scopus 로고    scopus 로고
    • Biodegradation and Rhodococcus masters of catabolic versatility
    • Larkin MJ, Kulakov La Allen CCR. (2005). Biodegradation and Rhodococcus masters of catabolic versatility. Curr Opin Biotechnol 16: 282-290
    • (2005) Curr Opin Biotechnol , vol.16 , pp. 282-290
    • Larkin, M.J.1    Kulakov La Allen, C.C.R.2
  • 79
    • 0036145420 scopus 로고    scopus 로고
    • Reconciling the many faces of lateral gene transfer
    • Lawrence JG, Ochman H. (2002). Reconciling the many faces of lateral gene transfer. Trends Microbiol 10: 1-4
    • (2002) Trends Microbiol , vol.10 , pp. 1-4
    • Lawrence, J.G.1    Ochman, H.2
  • 80
    • 0025180428 scopus 로고
    • Microbial degradation of hydrocarbons in the environment
    • Leahy JG, Colwell RR. (1990). Microbial degradation of hydrocarbons in the environment. Microbiol Rev 54 (3): 305-315
    • (1990) Microbiol Rev , vol.54 , Issue.3 , pp. 305-315
    • Leahy, J.G.1    Colwell, R.R.2
  • 81
    • 21844434913 scopus 로고    scopus 로고
    • Evolutionary origins of genomic repertoires in bacteria
    • Lerat E, Daubin V, Ochman H, Moran NA. (2005). Evolutionary origins of genomic repertoires in bacteria. PLoS Biol 3: e130
    • (2005) Plos Biol , vol.3 , pp. e130
    • Lerat, E.1    Daubin, V.2    Ochman, H.3    Moran, N.A.4
  • 82
    • 39749192558 scopus 로고    scopus 로고
    • Integration of horizontally transferred genes into regulatory interaction networks takes many million years
    • Lercher MJ, Pal C. (2008). Integration of horizontally transferred genes into regulatory interaction networks takes many million years. Mol Biol Evol 25: 559-567
    • (2008) Mol Biol Evol , vol.25 , pp. 559-567
    • Lercher, M.J.1    Pal, C.2
  • 83
    • 0039898575 scopus 로고
    • Transposable gene-activating elements in Pseudomonas cepacia
    • Silver S, Chakrabarty AM, Iglewski B, Kaplan S (eds) American Society for Microbiology, Washington DC
    • Lessie TG, Wood MS, Byrne A, Ferrante A. (1990). Transposable gene-activating elements in Pseudomonas cepacia. In: Silver S, Chakrabarty AM, Iglewski B, Kaplan S (eds) Pseudomonas: biotransformations pathogenesis and evolving biotechnology. American Society for Microbiology, Washington, DC, pp 279-292
    • (1990) Pseudomonas: Biotransformations Pathogenesis and Evolving Biotechnology , pp. 279-292
    • Lessie, T.G.1    Wood, M.S.2    Byrne, A.3    Ferrante, A.4
  • 84
    • 33947354590 scopus 로고    scopus 로고
    • Comparison of antimicrobial resistance of campylobacter jejuni isolated from humans chickens raw milk and environmental water in quebec
    • Levesque S, Frost E, Michaud S. (2007). Comparison of antimicrobial resistance of Campylobacter jejuni isolated from humans chickens raw milk and environmental water in Quebec. J Food Prot 70: 729-735
    • (2007) J Food Prot , vol.70 , pp. 729-735
    • Levesque, S.1    Frost, E.2    Michaud, S.3
  • 85
    • 77953635299 scopus 로고    scopus 로고
    • Biochemical principles of small RNA pathways
    • Liu Q, Paroo Z. (2010). Biochemical principles of small RNA pathways. Annu Rev Biochem 79: 295-319
    • (2010) Annu Rev Biochem , vol.79 , pp. 295-319
    • Liu, Q.1    Paroo, Z.2
  • 86
    • 0032925832 scopus 로고    scopus 로고
    • Analysis of catabolic genes for naphthalene and phenanthrene degradation in contaminated New Zealand soils
    • Lloyd-Jones G, Laurie AD, Hunter DWF, Fraser R. (1999). Analysis of catabolic genes for naphthalene and phenanthrene degradation in contaminated New Zealand soils. FEMS Microbiol Ecol 29: 69-79
    • (1999) Fems Microbiol Ecol , vol.29 , pp. 69-79
    • Lloyd-Jones, G.1    Laurie, A.D.2    Hunter, D.W.F.3    Fraser, R.4
  • 87
    • 77957826921 scopus 로고    scopus 로고
    • The complete multipartite genome sequence of cupriavidus necator jmp134, a versatile pollutant degrader
    • Lykidis A, Pérez-Pantoja D, Ledger T, Mavromatis K, Anderson IJ et al. (2010). The complete multipartite genome sequence of cupriavidus necator jmp134, a versatile pollutant degrader. PLoS One 5 (3): e9729
    • (2010) Plos One , vol.5 , Issue.3 , pp. e9729
    • Lykidis, A.1    Pérez-Pantoja, D.2    Ledger, T.3    Mavromatis, K.4    Anderson, I.J.5
  • 88
    • 58149146987 scopus 로고    scopus 로고
    • Evolution and dissemination of betalactamases accelerated by generation of beta lactum antibiotics
    • Madeinos AA. (1997). Evolution and dissemination of betalactamases accelerated by generation of beta lactum antibiotics. Clin Infect Dis 29: 1419-1422
    • (1997) Clin Infect Dis , vol.29 , pp. 1419-1422
    • Madeinos, A.A.1
  • 89
    • 38349101832 scopus 로고    scopus 로고
    • Molecular detection of conjugative plasmids and antibiotic resistance genes in anthropogenic soils from Germany and India
    • Malik A, Celik E-K Bohn C, Boeckelmann U, Knobel K, Grohmann E. (2008). Molecular detection of conjugative plasmids and antibiotic resistance genes in anthropogenic soils from Germany and India. FEMS Microbiol Lett 279: 207-216
    • (2008) Fems Microbiol Lett , vol.279 , pp. 207-216
    • Malik, A.1    Celik, E.-K.2    Bohn, C.3    Boeckelmann, U.4    Knobel, K.5    Grohmann, E.6
  • 90
    • 40749101805 scopus 로고    scopus 로고
    • Gene amelioration demonstrated: The journey of nascent genes in bacteria
    • Marri PR, Golding GB. (2008). Gene amelioration demonstrated: the journey of nascent genes in bacteria. Genome 5: 164-168
    • (2008) Genome , vol.5 , pp. 164-168
    • Marri, P.R.1    Golding, G.B.2
  • 91
    • 67649199638 scopus 로고    scopus 로고
    • Commensals: Unappreciated reservoir of antibiotic resistance
    • Marshall BM, Ochieng DJ, Levy SB. (2009). Commensals: unappreciated reservoir of antibiotic resistance. Microbe 4: 231-238
    • (2009) Microbe , vol.4 , pp. 231-238
    • Marshall, B.M.1    Ochieng, D.J.2    Levy, S.B.3
  • 92
    • 0033082247 scopus 로고    scopus 로고
    • Mosaic bacterial chromosomes: A challenge en route to a tree of genomes
    • Martin W. (1999). Mosaic bacterial chromosomes: a challenge en route to a tree of genomes. Bioessays 21: 99-104
    • (1999) Bioessays , vol.21 , pp. 99-104
    • Martin, W.1
  • 93
    • 0032515790 scopus 로고    scopus 로고
    • Quinolone resistance from a transferable plasmid
    • Martinez-Martinez L, Pascnal A, Jacoby GA. (1998). Quinolone resistance from a transferable plasmid. Lancet 351: 797-799
    • (1998) Lancet , vol.351 , pp. 797-799
    • Martinez-Martinez, L.1    Pascnal, A.2    Jacoby, G.A.3
  • 94
    • 33750877119 scopus 로고    scopus 로고
    • Antibiotic resistance of enterococcus spp Isolated from wastewater and sludge of poultry slaughterhouses
    • Martins da Costa PM, Vaz-Pires PM, Bernardo FM. (2006). Antibiotic resistance of Enterococcus spp. isolated from wastewater and sludge of poultry slaughterhouses. J Environ Sci Health B 41: 1393-1403
    • (2006) J Environ Sci Health B , vol.41 , pp. 1393-1403
    • Martins Da Costa, P.M.1    Vaz-Pires, P.M.2    Bernardo, F.M.3
  • 95
    • 0019774547 scopus 로고
    • Excision of the 40 kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats
    • Meulien P, Downing RG, Broda P. (1981). Excision of the 40 kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats. Mol Gen Genet 184: 97-101
    • (1981) Mol Gen Genet , vol.184 , pp. 97-101
    • Meulien, P.1    Downing, R.G.2    Broda, P.3
  • 96
    • 0034963502 scopus 로고    scopus 로고
    • Enzymes and operons mediating xenobiotic degradation in bacteria
    • Mishra V, Lal R, Srinivasan. (2001). Enzymes and operons mediating xenobiotic degradation in bacteria. Crit Rev Microbiol 27: 133-166
    • (2001) Crit Rev Microbiol , vol.27 , pp. 133-166
    • Mishra, V.1    Lal, R.2    Srinivasan3
  • 97
    • 0025159432 scopus 로고
    • Three isozymes of catechol 12-dioxygenase (pyrocatechase) aa a1 and B3 from Pseudononas arvilla C-1
    • Nakai C, Horiike K, Kuramitsu S, Kagamilyama H, Nozaki M. (1990). Three isozymes of catechol 12-dioxygenase (pyrocatechase) aa a1 and B3 from Pseudononas arvilla C-1. J Biol Chem 265: 660-665
    • (1990) J Biol Chem , vol.265 , pp. 660-665
    • Nakai, C.1    Horiike, K.2    Kuramitsu, S.3    Kagamilyama, H.4    Nozaki, M.5
  • 98
    • 3042849253 scopus 로고    scopus 로고
    • Biased biological functions of horizontally transferred genes in prokaryotic genomes
    • Nakamura Y, Itoh T, Matsuda H, Gojobori T. (2004). Biased biological functions of horizontally transferred genes in prokaryotic genomes. Nat Genet 36: 760-766
    • (2004) Nat Genet , vol.36 , pp. 760-766
    • Nakamura, Y.1    Itoh, T.2    Matsuda, H.3    Gojobori, T.4
  • 99
    • 54049133380 scopus 로고    scopus 로고
    • Adaptative eukaryote-to-eukaryote lateral gene transfer: Stress-related genes of algal origin in the closest unicellular relatives of animals
    • Nedelcu AM, Miles IH, Fagir AM, Karol K. (2008). Adaptative eukaryote-to-eukaryote lateral gene transfer: stress-related genes of algal origin in the closest unicellular relatives of animals. J Evol Biol 21: 1852-1860
    • (2008) J Evol Biol , vol.21 , pp. 1852-1860
    • Nedelcu, A.M.1    Miles, I.H.2    Fagir, A.M.3    Karol, K.4
  • 100
    • 33947122820 scopus 로고    scopus 로고
    • The diversity of multi-drug resistance profiles in tetracycline- resistant Vibrio species isolated from coastal sediments and seawater
    • Neela FA, Nonaka L, Suzuki S. (2007). The diversity of multi-drug resistance profiles in tetracycline- resistant Vibrio species isolated from coastal sediments and seawater. J Microbiol 45: 64-68
    • (2007) J Microbiol , vol.45 , pp. 64-68
    • Neela, F.A.1    Nonaka, L.2    Suzuki, S.3
  • 101
    • 0024094638 scopus 로고
    • DNA sequence of Acinetobacter calcoaceticus catechol 12-dioxygenase-I structural gene cat A: Evidence for evolutionary divergence of intradiol dioxygenases by acquisition of DNA sequence repetitions
    • Niedle EL, Harnett C, Bonitz S, Ornston LN. (1988). DNA sequence of Acinetobacter calcoaceticus catechol 12-dioxygenase-I structural gene cat A: evidence for evolutionary divergence of intradiol dioxygenases by acquisition of DNA sequence repetitions. J Bacteriol 170: 4874-4880
    • (1988) J Bacteriol , vol.170 , pp. 4874-4880
    • Niedle, E.L.1    Harnett, C.2    Bonitz, S.3    Ornston, L.N.4
  • 102
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman H, Lawrence JG, Grolsman EA. (2000). Lateral gene transfer and the nature of bacterial innovation. Nature 405: 299-304
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Grolsman, E.A.3
  • 103
    • 12744281935 scopus 로고
    • The extraction and Purification of microbial DNA from sediments
    • Ogram A, Sayler GS, Barkay T. (1987). The extraction and Purification of microbial DNA from sediments. J Microbiol Methods 7: 57-66
    • (1987) J Microbiol Methods , vol.7 , pp. 57-66
    • Ogram, A.1    Sayler, G.S.2    Barkay, T.3
  • 104
    • 77958003576 scopus 로고    scopus 로고
    • Molecular strategies of microbial adaptation to xenobiotics in natural environment
    • Ojo OA. (2007). Molecular strategies of microbial adaptation to xenobiotics in natural environment. Biotechnol Mol Biol Rev 2 (1): 001-013
    • (2007) Biotechnol Mol Biol Rev , vol.2 , Issue.1 , pp. 001-013
    • Ojo, O.A.1
  • 105
    • 0021024812 scopus 로고
    • Evolutionary adaptation of plasmid-encoded enzymes for degrading nylon oligomers
    • Okada H, Negoro S, Kimura H, Nakamura S. (1983). Evolutionary adaptation of plasmid-encoded enzymes for degrading nylon oligomers. Nature (London) 306: 203-206
    • (1983) Nature (London , vol.306 , pp. 203-206
    • Okada, H.1    Negoro, S.2    Kimura, H.3    Nakamura, S.4
  • 107
    • 27544449355 scopus 로고    scopus 로고
    • Horizontal gene transfer depends on gene content of the host
    • Pal C, Papp B, Lercher MJ. (2005). Horizontal gene transfer depends on gene content of the host. Bioinformatics 21 (S2): 222-223
    • (2005) Bioinformatics , vol.21 , Issue.S2 , pp. 222-223
    • Pal, C.1    Papp, B.2    Lercher, M.J.3
  • 108
    • 0025357079 scopus 로고
    • Organization and sequence analysis of the 24-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4
    • Perkins EJ, Gordon MP, Caceres O, Lurquin PF. (1990). Organization and sequence analysis of the 24-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4. J Bacteriol 172: 2351-2359
    • (1990) J Bacteriol , vol.172 , pp. 2351-2359
    • Perkins, E.J.1    Gordon, M.P.2    Caceres, O.3    Lurquin, P.F.4
  • 109
    • 0000227066 scopus 로고    scopus 로고
    • Endogenous antimicrobial molecules: An ecological perspective
    • Sussman M (ed) Academic, New York
    • Piepersberg W. (2001). Endogenous antimicrobial molecules: an ecological perspective. In: Sussman M (ed) Molecular medical microbiology, vol 1. Academic, New York, pp 561-585
    • (2001) Molecular Medical Microbiology , vol.1 , pp. 561-585
    • Piepersberg, W.1
  • 110
    • 36549087172 scopus 로고    scopus 로고
    • Do we need an extended evolutionary synthesis?
    • Pigliucci M. (2007). Do we need an extended evolutionary synthesis?. Evolution 61: 2743-2749
    • (2007) Evolution , vol.61 , pp. 2743-2749
    • Pigliucci, M.1
  • 111
    • 22444441190 scopus 로고    scopus 로고
    • Operon formation is driven by co-regulation and not by horizontal gene transfer
    • Price MN et al. (2005). Operon formation is driven by co-regulation and not by horizontal gene transfer. Genome Res 15: 809-819
    • (2005) Genome Res , vol.15 , pp. 809-819
    • Price, M.N.1
  • 112
    • 40149098889 scopus 로고    scopus 로고
    • Horizontal gene transfer and the evolution of transcriptional regulation in escherichia coli
    • Price MN, Dehal PS, Arkin AP. (2008). Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli. Genome Biol 9: R4
    • (2008) Genome Biol , vol.9 , pp. R4
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 113
    • 0035989433 scopus 로고    scopus 로고
    • Distributional profiles of homologous open reading frames among bacterial phyla: Implications for vertical and lateral transmission
    • Ragan MA, Charlebois RL. (2002). Distributional profiles of homologous open reading frames among bacterial phyla: implications for vertical and lateral transmission. Int J Syst Evol Microbiol 52: 777-787
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 777-787
    • Ragan, M.A.1    Charlebois, R.L.2
  • 114
    • 58149168869 scopus 로고    scopus 로고
    • Emerging antibiotic resistance in bacteria with special reference to India
    • Raghunath D. (2008). Emerging antibiotic resistance in bacteria with special reference to India. J Biosci 33: 593-603
    • (2008) J Biosci , vol.33 , pp. 593-603
    • Raghunath, D.1
  • 115
    • 77953922892 scopus 로고    scopus 로고
    • Strategies to insulate lentiviral vector-expressed transgenes
    • Ramezani A, Hawley RG. (2010). Strategies to insulate lentiviral vector-expressed transgenes. Methods Mol Biol 614: 77-100
    • (2010) Methods Mol Biol , vol.614 , pp. 77-100
    • Ramezani, A.1    Hawley, R.G.2
  • 116
    • 44649127567 scopus 로고    scopus 로고
    • The dynamics of soil bacterial community structure in response to yearly repeated agricultural copper treatments
    • Raniard L, Nowak V, Echairi A, Faloya V, Chaussod R. (2008). The dynamics of soil bacterial community structure in response to yearly repeated agricultural copper treatments. Res Microbiol 159: 251-254
    • (2008) Res Microbiol , vol.159 , pp. 251-254
    • Raniard, L.1    Nowak, V.2    Echairi, A.3    Faloya, V.4    Chaussod, R.5
  • 117
    • 0020003601 scopus 로고
    • TOL plasmid in constructed halo benzoate-degrading Pseudomonas strains: Prevention of meta pathway
    • Reineke W, Jeenes DJ, Williams PA, Knackmuss HA. (1982). TOL plasmid in constructed halo benzoate-degrading Pseudomonas strains: prevention of meta pathway. J Bacteriol 150: 195-201
    • (1982) J Bacteriol , vol.150 , pp. 195-201
    • Reineke, W.1    Jeenes, D.J.2    Williams, P.A.3    Knackmuss, H.A.4
  • 118
    • 0037743892 scopus 로고    scopus 로고
    • Retroids in archaea: Phylogeny and lateral origin
    • Rest JS, Mindell DP. (2003). Retroids in archaea: phylogeny and lateral origin. Mol Biol Evol 20: 1134-1142
    • (2003) Mol Biol Evol , vol.20 , pp. 1134-1142
    • Rest, J.S.1    Mindell, D.P.2
  • 119
    • 4344587758 scopus 로고    scopus 로고
    • Uncultured soil bacteria are a reservoir of new antibiotic resistance genes
    • Riesenfeld CS, Goodman RM, Handelsman J. (2004). Uncultured soil bacteria are a reservoir of new antibiotic resistance genes. Environ Microbiol 6: 981-989
    • (2004) Environ Microbiol , vol.6 , pp. 981-989
    • Riesenfeld, C.S.1    Goodman, R.M.2    Handelsman, J.3
  • 120
    • 55049138544 scopus 로고    scopus 로고
    • Evolutionary patterns in prokaryotic genomes
    • Rocha EPC. (2008). Evolutionary patterns in prokaryotic genomes. Curr Opin Microbiol 11: 454-460
    • (2008) Curr Opin Microbiol , vol.11 , pp. 454-460
    • Rocha, E.P.C.1
  • 122
    • 0023629714 scopus 로고
    • Survival strategies of bacteria in the natural environment
    • Roszak DB, Colwell RR. (1987). Survival strategies of bacteria in the natural environment. Microbiol Rev 51: 365-379
    • (1987) Microbiol Rev , vol.51 , pp. 365-379
    • Roszak, D.B.1    Colwell, R.R.2
  • 123
    • 0033545659 scopus 로고    scopus 로고
    • Bacterial evolution: Bacteria play pass the gene
    • Saunders NJ, Hood DW, Moxon ER. (1999). Bacterial evolution: bacteria play pass the gene. Curr Biol 9: R180-R183
    • (1999) Curr Biol , vol.9 , pp. R180-R183
    • Saunders, N.J.1    Hood, D.W.2    Moxon, E.R.3
  • 124
    • 0025073102 scopus 로고
    • Transduction of linked chromosomal genes between pseudomonas aeruginosa strains during incubation in situ in a fresh water habitat
    • Saye DJ, Ogunseitan OA, Sayler GS, Miller RV. (1990). Transduction of linked chromosomal genes between Pseudomonas aeruginosa strains during incubation in situ in a fresh water habitat. Appl Environ Microbiol 56: 140-145
    • (1990) Appl Environ Microbiol , vol.56 , pp. 140-145
    • Saye, D.J.1    Ogunseitan, O.A.2    Sayler, G.S.3    Miller, R.V.4
  • 126
  • 127
    • 33745076815 scopus 로고    scopus 로고
    • Tetracyclines and tetracycline resistance in agricultural soils: Microcosm and field studies
    • Schmitt H, Stoob K, Hamscher G, Smit E, Seinen W. (2006). Tetracyclines and tetracycline resistance in agricultural soils: microcosm and field studies. Microb Ecol 51: 267-276
    • (2006) Microb Ecol , vol.51 , pp. 267-276
    • Schmitt, H.1    Stoob, K.2    Hamscher, G.3    Smit, E.4    Seinen, W.5
  • 128
    • 0025896125 scopus 로고
    • Degradation of 2-methylaniline in Rhodococcus rhodochrous: Cloning and expression of two clustered catechol 2,3-dioxygenase genes from strain CTM
    • Schreiner A, Fuchs K, Lottspeich F, Poth H, Lingens F. (1991). Degradation of 2-methylaniline in Rhodococcus rhodochrous: cloning and expression of two clustered catechol 2,3-dioxygenase genes from strain CTM. J Gen Microbiol 137: 2041-2048
    • (1991) J Gen Microbiol , vol.137 , pp. 2041-2048
    • Schreiner, A.1    Fuchs, K.2    Lottspeich, F.3    Poth, H.4    Lingens, F.5
  • 129
    • 75549087004 scopus 로고    scopus 로고
    • Comparative genomics of pAKD4, the prototype IncP-1 δ plasmid with a complete backbone
    • Sen D, Yano H, Suzuki H, Krsl JE, Rogers L, Brown CJ, Top EM. (2010). Comparative genomics of pAKD4, the prototype IncP-1 δ plasmid with a complete backbone. Plasmid 63 (2): 98
    • (2010) Plasmid , vol.63 , Issue.2 , pp. 98
    • Sen, D.1    Yano, H.2    Suzuki, H.3    Król, J.E.4    Rogers, L.5    Brown, C.J.6    Top, E.M.7
  • 130
    • 0035350114 scopus 로고    scopus 로고
    • Characterization of the 450-kb linear plasmid in a polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1
    • Shimizu S, Kobayashi H, Masai E, Fuduka M. (2001). Characterization of the 450-kb linear plasmid in a polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1. Appl Environ Microbiol 67: 2021-2022
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2021-2022
    • Shimizu, S.1    Kobayashi, H.2    Masai, E.3    Fuduka, M.4
  • 132
    • 36249021315 scopus 로고    scopus 로고
    • Genome-wide experimental determination of barriers to horizontal gene transfer
    • Sorek R, Zhu Y, Creevey CJ, Francino MP, Bork P, Rubin EM. (2007). Genome-wide experimental determination of barriers to horizontal gene transfer. Science 318: 1449-1452
    • (2007) Science , vol.318 , pp. 1449-1452
    • Sorek, R.1    Zhu, Y.2    Creevey, C.J.3    Francino, M.P.4    Bork, P.5    Rubin, E.M.6
  • 134
    • 0020660931 scopus 로고
    • Adaptation of natural microbial communities to degradation of xenobiotic compounds: Effects of concentration exposure time inoculum and chemical structure
    • Spain JC, Van Veld PA. (1983). Adaptation of natural microbial communities to degradation of xenobiotic compounds: effects of concentration exposure time inoculum and chemical structure. Appl Environ Microbiol 45: 428-435
    • (1983) Appl Environ Microbiol , vol.45 , pp. 428-435
    • Spain, J.C.1    Van Veld, P.A.2
  • 135
    • 0842303297 scopus 로고    scopus 로고
    • Horizontal gene transfer and microbial adaptation to xenobiotics: New types of mobile genetic elements and lessons from ecological studies
    • Springael D, Top EM. (2004). Horizontal gene transfer and microbial adaptation to xenobiotics: new types of mobile genetic elements and lessons from ecological studies. Trends Microbiol 12 (2): 53-58
    • (2004) Trends Microbiol , vol.12 , Issue.2 , pp. 53-58
    • Springael, D.1    Top, E.M.2
  • 138
    • 25444524604 scopus 로고    scopus 로고
    • Genome analysis of multiple pathogenic isolates of Streptococus agalactiae: Implications for the microbial 'pan-genome
    • Tettelin H et al. (2005). Genome analysis of multiple pathogenic isolates of Streptococus agalactiae: implications for the microbial 'pan-genome'. Proc Natl Acad Sci 102: 13950-13955
    • (2005) Proc Natl Acad Sci , vol.102 , pp. 13950-13955
    • Tettelin, H.1
  • 140
    • 0038820052 scopus 로고    scopus 로고
    • The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds
    • Top EM, Springael D. (2003). The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds. Curr Opin Biotechnol 14 (3): 262-269
    • (2003) Curr Opin Biotechnol , vol.14 , Issue.3 , pp. 262-269
    • Top, E.M.1    Springael, D.2
  • 141
    • 0036848574 scopus 로고    scopus 로고
    • Catabolic mobile genetic elements and their possible use in bioaugmentation of polluted soils and waters
    • Top EM et al. (2002). Catabolic mobile genetic elements and their possible use in bioaugmentation of polluted soils and waters. FEMS Microbiol Ecol 42: 199-208
    • (2002) Fems Microbiol Ecol , vol.42 , pp. 199-208
    • Top, E.M.1
  • 142
    • 0022384660 scopus 로고
    • DNA probes for the detection of specific genes in bacteria isolated from the environment
    • Trevors JT. (1985). DNA probes for the detection of specific genes in bacteria isolated from the environment. Trends Biotechnol 3: 291-293
    • (1985) Trends Biotechnol , vol.3 , pp. 291-293
    • Trevors, J.T.1
  • 143
    • 0023504678 scopus 로고
    • Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWWO
    • Tsuda M, Iino T. (1987). Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWWO. Mol Gen Genet 210: 270-276
    • (1987) Mol Gen Genet , vol.210 , pp. 270-276
    • Tsuda, M.1    Iino, T.2
  • 144
    • 0024046404 scopus 로고
    • Identification and characterization of Tn4653 a transposon covering the toluene transposon Tn4651 on TOL plasmid pWWO
    • Tsuda M, Iino T. (1988). Identification and characterization of Tn4653 a transposon covering the toluene transposon Tn4651 on TOL plasmid pWWO. Mol Gen Genet 213: 72-77
    • (1988) Mol Gen Genet , vol.213 , pp. 72-77
    • Tsuda, M.1    Iino, T.2
  • 145
    • 0025073507 scopus 로고
    • Naphthalene degrading genes on plasmid NAH7 are on a defective transposon
    • Tsuda M, Iino T. (1990). Naphthalene degrading genes on plasmid NAH7 are on a defective transposon. Mol Gen Genet 223: 33-39
    • (1990) Mol Gen Genet , vol.223 , pp. 33-39
    • Tsuda, M.1    Iino, T.2
  • 146
    • 0024574036 scopus 로고
    • Toluene transposons Tn4651 and Tn4653 are class II transposons
    • Tsuda M, Minegishi KI, Iino T. (1989). Toluene transposons Tn4651 and Tn4653 are class II transposons. J Bacteriol 171: 1386-1393
    • (1989) J Bacteriol , vol.171 , pp. 1386-1393
    • Tsuda, M.1    Minegishi, K.I.2    Iino, T.3
  • 147
    • 0032936104 scopus 로고    scopus 로고
    • Mobile catabolic genes in bacteria
    • Tsuda M et al. (1999). Mobile catabolic genes in bacteria. J Biosci Bioeng 87: 401-410
    • (1999) J Biosci Bioeng , vol.87 , pp. 401-410
    • Tsuda, M.1
  • 148
    • 12944325784 scopus 로고    scopus 로고
    • One-component systems dominate signal transduction in prokaryotes
    • Ulrich LE, Koonin EV, Zhulin IB. (2005). One-component systems dominate signal transduction in prokaryotes. Trends Microbiol 13: 52-56
    • (2005) Trends Microbiol , vol.13 , pp. 52-56
    • Ulrich, L.E.1    Koonin, E.V.2    Zhulin, I.B.3
  • 149
    • 0025806414 scopus 로고
    • Sequence analysis of pseudomonas sp strain p51 tcb gene cluster which encodes metabolism of chlorinated catecols: Evidence for specialization of catecol 1 2-dioxygenases for chlorinated substrates
    • Van Der Meer JR, Eggen RIL, Zehnder AJB, De Vos WM. (1991). Sequence analysis of Pseudomonas sp. Strain P51 tcb gene cluster which encodes metabolism of chlorinated catecols: evidence for specialization of catecol 1 2-dioxygenases for chlorinated substrates. J Bacteriol 173: 2425-2434
    • (1991) J Bacteriol , vol.173 , pp. 2425-2434
    • Van Der Meer, J.R.1    Eggen, R.I.L.2    Zehnder, A.J.B.3    De Vos, W.M.4
  • 150
    • 6044272942 scopus 로고    scopus 로고
    • The completely sequenced plasmid pest4011 contains a novel incp1 backbone and a catabolic transposon harboring tfd genes for 2, 4-dichlorophenoxyacetic acid degradation
    • Vedler E, Vahter M, Heinaru A. (2004). The completely sequenced plasmid pest4011 contains a novel incp1 backbone and a catabolic transposon harboring tfd genes for 2, 4-dichlorophenoxyacetic acid degradation. J Bacteriol 186 (21): 7161-7174
    • (2004) J Bacteriol , vol.186 , Issue.21 , pp. 7161-7174
    • Vedler, E.1    Vahter, M.2    Heinaru, A.3
  • 151
    • 54349125857 scopus 로고    scopus 로고
    • Distant horizontal gene transfer is rare for multiple families of prokaryotic insertion sequences
    • Wagner A, De La Chaux N. (2008). Distant horizontal gene transfer is rare for multiple families of prokaryotic insertion sequences. Mol Genet Genomics 280: 397-408
    • (2008) Mol Genet Genomics , vol.280 , pp. 397-408
    • Wagner, A.1    De La Chaux, N.2
  • 153
    • 33845371571 scopus 로고    scopus 로고
    • The frequency of eubacterium-to-eukaryote lateral gene transfer shows signi fi cant cross-taxa variation within amoebozoa
    • Watkins RF, Gray MW. (2006). The frequency of eubacterium-to-eukaryote lateral gene transfer shows signi fi cant cross-taxa variation within amoebozoa. J Mol Evol 63: 801-814
    • (2006) J Mol Evol , vol.63 , pp. 801-814
    • Watkins, R.F.1    Gray, M.W.2
  • 154
    • 0242669334 scopus 로고    scopus 로고
    • Gene cloning and characterization of multiple alkanehydroxylase systems in Rhodococcus strains Q15 and NRRLB-16531
    • Whyte LG, Smits THM, Labbe D, Witholt B, Greer CW, Van Beilen JB. (2002). Gene cloning and characterization of multiple alkanehydroxylase systems in Rhodococcus strains Q15 and NRRLB-16531. Appl Environ Microbiol 68: 5933-5942
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5933-5942
    • Whyte, L.G.1    Smits, T.H.M.2    Labbe, D.3    Witholt, B.4    Greer, C.W.5    Van Beilen, J.B.6
  • 155
    • 0025079999 scopus 로고
    • Construction of hybrid xylE genes between the two duplicate homologous genes from TOL plasmid pWW53: Comparison of the kinetic properties of the gene products
    • Williams PA, Assinder SJ, Shaw LE. (1990). Construction of hybrid xylE genes between the two duplicate homologous genes from TOL plasmid pWW53: comparison of the kinetic properties of the gene products. J Gen Microbiol 136: 1583-1589
    • (1990) J Gen Microbiol , vol.136 , pp. 1583-1589
    • Williams, P.A.1    Assinder, S.J.2    Shaw, L.E.3
  • 156
    • 0036400593 scopus 로고    scopus 로고
    • Histidine protein kinases: Key signal transducers outside the animal kingdom
    • Wolanin PM, Thomason PA, Stock JB. (2002). Histidine protein kinases: key signal transducers outside the animal kingdom. Genome Biol 3: R3013
    • (2002) Genome Biol , vol.3 , pp. R3013
    • Wolanin, P.M.1    Thomason, P.A.2    Stock, J.B.3
  • 158
    • 33847151750 scopus 로고    scopus 로고
    • The antibiotic resistome: The nexus of chemical and genetic diversity
    • Wright GD. (2007). The antibiotic resistome: the nexus of chemical and genetic diversity. Nat Rev Microbiol 5: 175-186
    • (2007) Nat Rev Microbiol , vol.5 , pp. 175-186
    • Wright, G.D.1
  • 159
    • 77956548642 scopus 로고    scopus 로고
    • Complete nucleotide sequence of tol plasmid pdk1 provides evidence for evolutionary history of incp-7 catabolic plasmids
    • Yano H, Miyakoshi M, Ohshima K, Tabata M, Nagata Y, Hattori M, Tsuda M. (2010). Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids. J Bacteriol 192 (17): 4337-4347
    • (2010) J Bacteriol , vol.192 , Issue.17 , pp. 4337-4347
    • Yano, H.1    Miyakoshi, M.2    Ohshima, K.3    Tabata, M.4    Nagata, Y.5    Hattori, M.6    Tsuda, M.7
  • 160
    • 33748277982 scopus 로고    scopus 로고
    • Phylogenetic analyses of cyanobacterial genomes: Quanti fication of horizontal gene transfer events
    • Zhaxybayeva O, Gogarten JP, Charlebois RL, Doolittle WF, Papke RT. (2006). Phylogenetic analyses of cyanobacterial genomes: quanti fication of horizontal gene transfer events. Genome Res 16: 1099-1108
    • (2006) Genome Res , vol.16 , pp. 1099-1108
    • Zhaxybayeva, O.1    Gogarten, J.P.2    Charlebois, R.L.3    Doolittle, W.F.4    Papke, R.T.5
  • 161
    • 65249126970 scopus 로고    scopus 로고
    • On the chimeric nature thermophilic origin and phylogenetic placement of the thermotogales
    • Zhaxybayeva O et al. (2009). On the chimeric nature thermophilic origin and phylogenetic placement of the Thermotogales. Proc Natl Acad Sci 106: 5865-5870
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 5865-5870
    • Zhaxybayeva, O.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.