-
1
-
-
33750738577
-
Antimicrobial resistance at farm level
-
Acar JF, Moulin G. (2006). Antimicrobial resistance at farm level. Rev Sci Technol 25: 775-792
-
(2006)
Rev Sci Technol
, vol.25
, pp. 775-792
-
-
Acar, J.F.1
Moulin, G.2
-
2
-
-
33947260230
-
Molecular mechanisms of antibacterial multidrug resistance
-
Alekshun MN, Levy SB. (2007). Molecular mechanisms of antibacterial multidrug resistance. Cell 128: 1037-1050
-
(2007)
Cell
, vol.128
, pp. 1037-1050
-
-
Alekshun, M.N.1
Levy, S.B.2
-
3
-
-
33751429178
-
The evolution of two-component systems in bacteria reveals different strategies for niche adaptation
-
Alm E, Huang K, Arkin A. (2006). The evolution of two-component systems in bacteria reveals different strategies for niche adaptation. PLoS Comput Biol 2 (11): e143
-
(2006)
Plos Comput Biol
, vol.2
, Issue.11
, pp. e143
-
-
Alm, E.1
Huang, K.2
Arkin, A.3
-
5
-
-
0031730033
-
Screening of heavy metal-tolerant actinomycetes isolated from the sali river
-
Amoroso MJ, Castro GR, Carlino FJ, Romero NC, Hill RT, Oliver G. (1998). Screening of heavy metal-tolerant actinomycetes isolated from the Sali River. J Gen Appl Microbiol 44: 129-132
-
(1998)
J Gen Appl Microbiol
, vol.44
, pp. 129-132
-
-
Amoroso, M.J.1
Castro, G.R.2
Carlino, F.J.3
Romero, N.C.4
Hill, R.T.5
Oliver, G.6
-
6
-
-
21144441817
-
Lateral gene transfer in eukaryotes
-
Andersson JO. (2005). Lateral gene transfer in eukaryotes. Cell Mol Life Sci 62: 1182-1197
-
(2005)
Cell Mol Life Sci
, vol.62
, pp. 1182-1197
-
-
Andersson, J.O.1
-
7
-
-
0037458124
-
Phylogenetic analysis of diplomonad genes reveals frequent lateral gene transfer affecting eukaryotes
-
Andersson JO, Sjogren AM, Davis LAM, Embley TM, Roger AJ. (2003). Phylogenetic analysis of diplomonad genes reveals frequent lateral gene transfer affecting eukaryotes. Curr Biol 13: 94-104
-
(2003)
Curr Biol
, vol.13
, pp. 94-104
-
-
Andersson, J.O.1
Sjogren, A.M.2
Davis, L.A.M.3
Embley, T.M.4
Roger, A.J.5
-
8
-
-
44249084193
-
Conjugative plasmids in multi-resistant bacterial isolates from Indian soil
-
Ansari MI, Grohmann E, Malik A. (2008). Conjugative plasmids in multi-resistant bacterial isolates from Indian soil. J Appl Microbiol 104: 1774-1781
-
(2008)
J Appl Microbiol
, vol.104
, pp. 1774-1781
-
-
Ansari, M.I.1
Grohmann, E.2
Malik, A.3
-
9
-
-
0024093037
-
Comparison of the meta pathway operons on NAH plasmids pWW60-22 and TOL plasmid pWW53-4 and its evolutionary significance
-
Assinder SJ, Williams PA. (1988). Comparison of the meta pathway operons on NAH plasmids pWW60-22 and TOL plasmid pWW53-4 and its evolutionary significance. J Gen Microbiol 134: 2769-2778
-
(1988)
J Gen Microbiol
, vol.134
, pp. 2769-2778
-
-
Assinder, S.J.1
Williams, P.A.2
-
10
-
-
0025005226
-
The TOL plasmids: Determinants of the catabolism of toluene and the xylenes
-
Assinder SJ, Williams PA. (1990). The TOL plasmids: determinants of the catabolism of toluene and the xylenes. Adv Microb Physiol 31: 1-69
-
(1990)
Adv Microb Physiol
, vol.31
, pp. 1-69
-
-
Assinder, S.J.1
Williams, P.A.2
-
12
-
-
40849098551
-
Direct visualization of horizontal gene transfer
-
Babic A, Lindner AB, Vulic M, Stewart EJ, Radman M. (2008). Direct visualization of horizontal gene transfer. Science 319: 1533-1536
-
(2008)
Science
, vol.319
, pp. 1533-1536
-
-
Babic, A.1
Lindner, A.B.2
Vulic, M.3
Stewart, E.J.4
Radman, M.5
-
13
-
-
70849111236
-
Microbial community structure in hexadecane- and naphthalene-enriched gas station soil
-
Baek KH, Kim HS. (2009). Microbial community structure in hexadecane- and naphthalene-enriched gas station soil. J Microbiol Biotechnol 19: 651-657
-
(2009)
J Microbiol Biotechnol
, vol.19
, pp. 651-657
-
-
Baek, K.H.1
Kim, H.S.2
-
14
-
-
67649379043
-
Monitoring bacterial population dynamics using real-time PCR during the bioremediation of crude-oil-contaminated soil
-
Baek KH, Yoon BD, Cho DH, Kim BH, Oh HM, Kim HS. (2009). Monitoring bacterial population dynamics using real-time PCR during the bioremediation of crude-oil-contaminated soil. J Microbiol Biotechnol 19: 339-345
-
(2009)
J Microbiol Biotechnol
, vol.19
, pp. 339-345
-
-
Baek, K.H.1
Yoon, B.D.2
Cho, D.H.3
Kim, B.H.4
Oh, H.M.5
Kim, H.S.6
-
15
-
-
38349128272
-
Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny
-
Bapteste E, Susko E, Leigh J, Ruiz-Trillo I, Bucknam J, Doolittle WF. (2008). Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny. Mol Biol Evol 25: 83-91
-
(2008)
Mol Biol Evol
, vol.25
, pp. 83-91
-
-
Bapteste, E.1
Susko, E.2
Leigh, J.3
Ruiz-Trillo, I.4
Bucknam, J.5
Doolittle, W.F.6
-
16
-
-
0039229975
-
Evolution of antibiotic resistance
-
Baquero F, Blazquez J. (1997). Evolution of antibiotic resistance. Tree 12 (12): 482-487
-
(1997)
Tree
, vol.12
, Issue.12
, pp. 482-487
-
-
Baquero, F.1
Blazquez, J.2
-
17
-
-
0031879280
-
Antibiotic-selective environments
-
Baquero F, Negri MC, Morosini MI, Blazquez J. (1998). Antibiotic-selective environments. Clin Infect Dis 27 (1): S5-S11
-
(1998)
Clin Infect Dis
, vol.27
, Issue.1
, pp. S5-S11
-
-
Baquero, F.1
Negri, M.C.2
Morosini, M.I.3
Blazquez, J.4
-
18
-
-
0024020723
-
Adaptation of aquatic microbial communities to pollutant stress
-
Barkay T, Pritchard H. (1988). Adaptation of aquatic microbial communities to pollutant stress. Microbiol Sci 5: 165-169
-
(1988)
Microbiol Sci
, vol.5
, pp. 165-169
-
-
Barkay, T.1
Pritchard, H.2
-
19
-
-
33644859122
-
Effects of endogenous substrates on adaptation of anaerobic microbial communities to 3-chlorobenzoate
-
Becker JG, Berardesco G, Rittmann BE, Stahl DA. (2006). Effects of endogenous substrates on adaptation of anaerobic microbial communities to 3-chlorobenzoate. Appl Environ Microbiol 72 (1): 449-456
-
(2006)
Appl Environ Microbiol
, vol.72
, Issue.1
, pp. 449-456
-
-
Becker, J.G.1
Berardesco, G.2
Rittmann, B.E.3
Stahl, D.A.4
-
20
-
-
79953231153
-
High-throughput screening of microbial adaptation to environmental stress
-
Belanger PA, Beaudin J, Roy S. (2011). High-throughput screening of microbial adaptation to environmental stress. J Microbiol Methods 85: 92-97
-
(2011)
J Microbiol Methods
, vol.85
, pp. 92-97
-
-
Belanger, P.A.1
Beaudin, J.2
Roy, S.3
-
21
-
-
0033704264
-
Bacterial cooperative organization under antibiotic stress
-
Ben-Jacoba E, Cohen I, Golding I, Gutnick DL, Tcherpakov M, Helbing D, Ron IG. (2000). Bacterial cooperative organization under antibiotic stress. Phys A 282: 247-282
-
(2000)
Phys A
, vol.282
, pp. 247-282
-
-
Ben-Jacoba, E.1
Cohen, I.2
Golding, I.3
Gutnick, D.L.4
Tcherpakov, M.5
Helbing, D.6
Ron, I.G.7
-
22
-
-
0242711908
-
Aminoglycoside antibiotic-inactivating enzymes in actinomycetes similar to those present in clinical isolates of antibiotic-resistant bacteria
-
Benveniste R, Davies J. (1973). Aminoglycoside antibiotic-inactivating enzymes in actinomycetes similar to those present in clinical isolates of antibiotic-resistant bacteria. Proc Natl Acad Sci 70: 2276-2280
-
(1973)
Proc Natl Acad Sci
, vol.70
, pp. 2276-2280
-
-
Benveniste, R.1
Davies, J.2
-
23
-
-
85193184760
-
Bioremediation
-
Prentice Hall Publishers Upper Saddle River
-
Black JG. (1999). Bioremediation. In: Microbiology: principles and explorations. Prentice Hall Publishers, Upper Saddle River, pp 751-752
-
(1999)
Microbiology: Principles and Explorations
, pp. 751-752
-
-
Black, J.G.1
-
24
-
-
44449140116
-
Confusing kinships
-
Bohannon J. (2008). Confusing kinships. Science 320: 1031-1033
-
(2008)
Science
, vol.320
, pp. 1031-1033
-
-
Bohannon, J.1
-
25
-
-
77950195231
-
Horizontal gene transfer in evolution: Facts and challenges
-
Boto L. (2010). Horizontal gene transfer in evolution: facts and challenges. Proc R Soc B 277: 819-827
-
(2010)
Proc R Soc B
, vol.277
, pp. 819-827
-
-
Boto, L.1
-
26
-
-
56349169406
-
Accounting for horizontal gene transfers explains con fl icting hypotheses regarding the position of aqui fi cales in the phylogeny of bacteria
-
Boussau B, Gueguen L, Gouy M. (2008). Accounting for horizontal gene transfers explains con fl icting hypotheses regarding the position of aqui fi cales in the phylogeny of Bacteria. BMC Evol Biol 8: 272
-
(2008)
BMC Evol Biol
, vol.8
, pp. 272
-
-
Boussau, B.1
Gueguen, L.2
Gouy, M.3
-
27
-
-
0037306453
-
Ancient horizontal gene transfer
-
Brown J. (2003). Ancient horizontal gene transfer. Nat Rev Genet 4: 121-132
-
(2003)
Nat Rev Genet
, vol.4
, pp. 121-132
-
-
Brown, J.1
-
28
-
-
0037050279
-
Mobile elements in archaeal genomes
-
Brugger K, Redder P, She QX, Confalonieri F, Zivanovic Y, Garrett RA. (2002). Mobile elements in archaeal genomes. FEMS Microbiol Lett 206: 131-141
-
(2002)
Fems Microbiol Lett
, vol.206
, pp. 131-141
-
-
Brugger, K.1
Redder, P.2
She, Q.X.3
Confalonieri, F.4
Zivanovic, Y.5
Garrett, R.A.6
-
29
-
-
15244353368
-
Isolation and characterization of symbiotically effective rhizobium resistant to arsenic and heavy metals after the toxic spill at the aznalcollar pyrite mine
-
Carrasco JA, Armario P, Pajuelo E, Burgos A, Caviedes MA, Lopez R, Chamber MA, Palomares AJ. (2005). Isolation and characterization of symbiotically effective Rhizobium resistant to arsenic and heavy metals after the toxic spill at the Aznalcollar pyrite mine. Soil Biol Biochem 37: 1131-1140
-
(2005)
Soil Biol Biochem
, vol.37
, pp. 1131-1140
-
-
Carrasco, J.A.1
Armario, P.2
Pajuelo, E.3
Burgos, A.4
Caviedes, M.A.5
Lopez, R.6
Chamber, M.A.7
Palomares, A.J.8
-
30
-
-
46149104377
-
Evo-devo and expanding evolutionary synthesis A genetic theory of morphological evolution
-
Carroll SB. (2008). Evo-devo and expanding evolutionary synthesis A genetic theory of morphological evolution. Cell 134: 25-36
-
(2008)
Cell
, vol.134
, pp. 25-36
-
-
Carroll, S.B.1
-
31
-
-
0030840719
-
Effectiveness and genetic diversity of rhizobium leguminosarum bv trifolii isolates in portuguese soils polluted by industrial effluents
-
Castro IV, Ferreira EM, McGrath SP. (1997). Effectiveness and genetic diversity of Rhizobium leguminosarum bv trifolii isolates in Portuguese soils polluted by industrial effluents. Soil Biol Biochem 29: 1209-1213
-
(1997)
Soil Biol Biochem
, vol.29
, pp. 1209-1213
-
-
Castro, I.V.1
Ferreira, E.M.2
McGrath, S.P.3
-
32
-
-
0022974415
-
Naturally occurring tol plasmids in pseudomonas strains carry either two homologous or two nonhomologous catechol 23-oxygenase genes
-
Chat field LK, Williams PA. (1986). Naturally occurring TOL plasmids in Pseudomonas strains carry either two homologous or two nonhomologous catechol 23-oxygenase genes. J Bacteriol 168: 878-885
-
(1986)
J Bacteriol
, vol.168
, pp. 878-885
-
-
Chatfield, L.K.1
Williams, P.A.2
-
33
-
-
0026035006
-
Biodegradation of halogenated organic compounds
-
Chaudhry GR, Chapalamadugu S. (1991). Biodegradation of halogenated organic compounds. Microbiol Rev 55: 59-79
-
(1991)
Microbiol Rev
, vol.55
, pp. 59-79
-
-
Chaudhry, G.R.1
Chapalamadugu, S.2
-
34
-
-
34248396432
-
Global extent of horizontal gene transfer
-
Choi IG, Kim SH. (2007). Global extent of horizontal gene transfer. Proc Natl Acad Sci 104: 4489-4494
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 4489-4494
-
-
Choi, I.G.1
Kim, S.H.2
-
35
-
-
79952573281
-
The evolution of degradative pathways
-
Gibson DT (ed) Marcel Dekker Inc, New York
-
Clarke PH. (1984). The evolution of degradative pathways. In: Gibson DT (ed) Microbial degradation of organic compounds. Marcel Dekker Inc, New York, pp 11-27
-
(1984)
Microbial Degradation of Organic Compounds
, pp. 11-27
-
-
Clarke, P.H.1
-
36
-
-
0034213801
-
Evolution of ametabolic pathway for degradation of a toxic xenobiotic: The patchwork approach
-
Copley SD. (2000). Evolution of ametabolic pathway for degradation of a toxic xenobiotic: the patchwork approach. Trends Biochem Sci 25: 261-265
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 261-265
-
-
Copley, S.D.1
-
38
-
-
35748929920
-
Expanding the soil antibiotic resistome: Exploring environmental diversity
-
D'Costa VM, Grif fi ths E, Wright GD. (2007). Expanding the soil antibiotic resistome: exploring environmental diversity. Curr Opin Microbiol 10: 481-489
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 481-489
-
-
D'costa, V.M.1
Griffiths, E.2
Wright, G.D.3
-
39
-
-
48249151749
-
Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
-
Dagan T, Artzy-Randrup Y, Martin W. (2008). Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc Natl Acad Sci 105: 10039-10044
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 10039-10044
-
-
Dagan, T.1
Artzy-Randrup, Y.2
Martin, W.3
-
41
-
-
3042569657
-
Bacterial genomes as new gene homes: The genealogy of orfans in e coli
-
Daubin V, Ochman H. (2004). Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli. Genome Res 14: 1036-1042
-
(2004)
Genome Res
, vol.14
, pp. 1036-1042
-
-
Daubin, V.1
Ochman, H.2
-
42
-
-
0034443286
-
Microbial bio films: From ecology to molecular genetics
-
Davey ME, O'toole GA. (2000). Microbial bio films: from ecology to molecular genetics. Microbiol Mol Biol Rev 64 (4): 847-867
-
(2000)
Microbiol Mol Biol Rev
, vol.64
, Issue.4
, pp. 847-867
-
-
Davey, M.E.1
O'toole, G.A.2
-
43
-
-
0026672360
-
Another look at antibiotic resistance
-
Davies J. (1992). Another look at antibiotic resistance. J Gen Microbiol 138: 1553-1559
-
(1992)
J Gen Microbiol
, vol.138
, pp. 1553-1559
-
-
Davies, J.1
-
44
-
-
77957980707
-
Origins and evolution of antibiotic resistance
-
Davies J, Davies D. (2010). Origins and evolution of antibiotic resistance. Microbiol Mol Biol Rev 74 (3): 417-433
-
(2010)
Microbiol Mol Biol Rev
, vol.74
, Issue.3
, pp. 417-433
-
-
Davies, J.1
Davies, D.2
-
45
-
-
33745468611
-
Metal and antibiotic-resistance in psychrotrophic bacteria from antarctic marine waters
-
De Souza MJ, Nair S, Loka Bharathi PA, Chandramohan D. (2006). Metal and antibiotic-resistance in psychrotrophic bacteria from Antarctic Marine waters. Ecotoxicology 15: 379-384
-
(2006)
Ecotoxicology
, vol.15
, pp. 379-384
-
-
De Souza, M.J.1
Nair, S.2
Loka Bharathi, P.A.3
Chandramohan, D.4
-
46
-
-
34548018528
-
Mechanistic approaches to the study of evolution: The functional synthesis
-
Dean AM, Thornton JW. (2007). Mechanistic approaches to the study of evolution: the functional synthesis. Nat Rev Genet 8: 1604-1607
-
(2007)
Nat Rev Genet
, vol.8
, pp. 1604-1607
-
-
Dean, A.M.1
Thornton, J.W.2
-
47
-
-
0019511050
-
Properties of six pesticide degradation plasmids isolated from alcaligenes paradoxus and alcaligenes eutrophus
-
Don RH, Pemberton JM. (1981). Properties of six pesticide degradation plasmids isolated from Alcaligenes paradoxus and Alcaligenes eutrophus. J Bacteriol 145: 681-686
-
(1981)
J Bacteriol
, vol.145
, pp. 681-686
-
-
Don, R.H.1
Pemberton, J.M.2
-
48
-
-
0022003968
-
Transposon mutagenesis and cloning analysis of the pathways for degradation of 24-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134 (pJP4
-
Don RH, Weightman AJ, Knackmuss HJ, Timmis KN. (1985). Transposon mutagenesis and cloning analysis of the pathways for degradation of 24-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMP134 (pJP4). J Bacteriol 161: 85-90
-
(1985)
J Bacteriol
, vol.161
, pp. 85-90
-
-
Don, R.H.1
Weightman, A.J.2
Knackmuss, H.J.3
Timmis, K.N.4
-
49
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
Doolittle WF. (1999). Phylogenetic classification and the universal tree. Science 284: 2124-2128
-
(1999)
Science
, vol.284
, pp. 2124-2128
-
-
Doolittle, W.F.1
-
50
-
-
33847790997
-
Pattern pluralism and the tree of life hypothesis
-
Doolittle WF, Bapteste E. (2007). Pattern pluralism and the tree of life hypothesis. Proc Natl Acad Sci 104: 2043-2049
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 2043-2049
-
-
Doolittle, W.F.1
Bapteste, E.2
-
51
-
-
0032510454
-
Do archaea have a mixed heritage?
-
Doolittle WF, Logsdon JM Jr. (1998). Do archaea have a mixed heritage?. Curr Biol 8: R209-R211
-
(1998)
Curr Biol
, vol.8
, pp. R209-R211
-
-
Doolittle, W.F.1
Logsdon, J.M.2
-
52
-
-
0034469149
-
Enrichment and molecular characterization of a bacterial culture that degrades methoxy-methyl urea herbicides and their aniline derivatives
-
El-Fantroussi S. (2000). Enrichment and molecular characterization of a bacterial culture that degrades methoxy-methyl urea herbicides and their aniline derivatives. Appl Environ Microbiol 66 (12): 5110-5115
-
(2000)
Appl Environ Microbiol
, vol.66
, Issue.12
, pp. 5110-5115
-
-
El-Fantroussi, S.1
-
54
-
-
0033517997
-
Lessons from the Aeropyrum pernix genome
-
Faguy DM, Doolittle WF. (1999). Lessons from the Aeropyrum pernix genome. Curr Biol 9: R883-R886
-
(1999)
Curr Biol
, vol.9
, pp. R883-R886
-
-
Faguy, D.M.1
Doolittle, W.F.2
-
55
-
-
33947194371
-
Antimicrobial resistance patterns in Enterobacteriaceae isolated from an urban wastewater treatment plant
-
Ferreira da Silva M, Vaz-Moreira I, Gonzalez-Pajuelo M, Nunes OC, Manaia CM. (2007). Antimicrobial resistance patterns in Enterobacteriaceae isolated from an urban wastewater treatment plant. FEMS Microbiol Ecol 60: 166-176
-
(2007)
Fems Microbiol Ecol
, vol.60
, pp. 166-176
-
-
Ferreira Da Silva, M.1
Vaz-Moreira, I.2
Gonzalez-Pajuelo, M.3
Nunes, O.C.4
Manaia, C.M.5
-
56
-
-
0344856525
-
Adaptive mutation
-
Baumberg S, Young JPW, Wellington EMH, Saunders JR (eds) Cambridge University Press, Cambridge
-
Foster P. (1995). Adaptive mutation. In: Baumberg S, Young JPW, Wellington EMH, Saunders JR (eds) Population genetics of bacteria. Cambridge University Press, Cambridge, pp 13-30
-
(1995)
Population Genetics of Bacteria
, pp. 13-30
-
-
Foster, P.1
-
57
-
-
0026501520
-
Involvement of a chlorobenzoate catabolic transposon Tn5271 in community adaptation to chlorobiphenyl chloroaniline and 2, 4 dichlorophenoxyacetic acid in a freshwater ecosystem
-
Fulthorpe RR, Wyndham RC. (1992). Involvement of a chlorobenzoate catabolic transposon Tn5271 in community adaptation to chlorobiphenyl chloroaniline and 2, 4 dichlorophenoxyacetic acid in a freshwater ecosystem. Appl Environ Microbiol 58: 314-325
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 314-325
-
-
Fulthorpe, R.R.1
Wyndham, R.C.2
-
58
-
-
0003963058
-
-
2nd edn. Wiley, Chichester
-
Gale EF, Cundliffe E, Reynolds PE, Richmond M, Waring MJ (eds). (1981). The molecular basis of antibiotic action, 2nd edn. Wiley, Chichester
-
(1981)
The Molecular Basis of Antibiotic Action
-
-
Gale, E.F.1
Cundliffe, E.2
Reynolds, P.E.3
Richmond, M.4
Waring, M.J.5
-
59
-
-
23944523895
-
A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ extroverts and introverts
-
Galperin MY. (2005). A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ extroverts and introverts. BMC Microbiol 5: 35
-
(2005)
BMC Microbiol
, vol.5
, pp. 35
-
-
Galperin, M.Y.1
-
60
-
-
26444580130
-
The cobweb of life revealed by genome scale estimates of horizontal gene transfer
-
Ge F, Wang LS, Kim J. (2005). The cobweb of life revealed by genome scale estimates of horizontal gene transfer. PLoS Biol 3: e316
-
(2005)
Plos Biol
, vol.3
, pp. e316
-
-
Ge, F.1
Wang, L.S.2
Kim, J.3
-
63
-
-
0017109047
-
The production and role of antibiotics in soil
-
Gottlieb D. (1976). The production and role of antibiotics in soil. J Antibiot (Tokyo) 29: 987-1000
-
(1976)
J Antibiot (Tokyo
, vol.29
, pp. 987-1000
-
-
Gottlieb, D.1
-
64
-
-
34548242612
-
Horizontal gene transfer of two cytoskeletal elements from a eukaryote to a cyanobacterium
-
Guljamow A, Jenke-Kodama H, Saumweber H, Quillardet P, Frangeul L, Castets AM, Bouchier A, Tandeau M, De Marsac N, Dittmann E. (2007). Horizontal gene transfer of two cytoskeletal elements from a eukaryote to a cyanobacterium. Curr Biol 17: R757-R759
-
(2007)
Curr Biol
, vol.17
, pp. R757-R759
-
-
Guljamow, A.1
Jenke-Kodama, H.2
Saumweber, H.3
Quillardet, P.4
Frangeul, L.5
Castets, A.M.6
Bouchier, A.7
Tandeau, M.8
De Marsac, N.9
Dittmann, E.10
-
65
-
-
10344227692
-
Metagenomics: Application of genomics to uncultured microorganisms
-
Handelsman J. (2004). Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68: 669-685
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
66
-
-
84866919992
-
Plasmids foster diversi fication and adaptation of bacterial populations in soil
-
Heuer H, Smalla K. (2012). Plasmids foster diversi fication and adaptation of bacterial populations in soil. FEMS Microbiol Rev. doi: 10.1111/j.1574-6976.2012.00337.x
-
(2012)
Fems Microbiol Rev
-
-
Heuer, H.1
Smalla, K.2
-
67
-
-
36549029848
-
Characterization and modeling of the Haemophilus in fl uenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains
-
Hogg JS, Hu FZ, Janto B, Boissy R, Hayes J, Keefe R, Post JC, Ehrlich GD. (2007). Characterization and modeling of the Haemophilus in fl uenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains. Genome Biol 8: R103
-
(2007)
Genome Biol
, vol.8
, pp. R103
-
-
Hogg, J.S.1
Hu, F.Z.2
Janto, B.3
Boissy, R.4
Hayes, J.5
Keefe, R.6
Post, J.C.7
Ehrlich, G.D.8
-
68
-
-
0023866522
-
DNA probe method for the detection of specific microorganisms in the soil bacterial community
-
Holben WE, Jansson JK, Chelm BK, Tiedje JM. (1988). DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl Environ Microbiol 54: 703-711
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 703-711
-
-
Holben, W.E.1
Jansson, J.K.2
Chelm, B.K.3
Tiedje, J.M.4
-
69
-
-
33847095513
-
Characterization of integrons and tetracycline resistance determinants in aeromonas spp isolated from south african aquaculture systems
-
Jacobs L, Chenia HY. (2007). Characterization of integrons and tetracycline resistance determinants in Aeromonas spp. isolated from South African aquaculture systems. Int J Food Microbiol 114: 295-306
-
(2007)
Int J Food Microbiol
, vol.114
, pp. 295-306
-
-
Jacobs, L.1
Chenia, H.Y.2
-
70
-
-
0033616714
-
Horizontal gene transfer among genomes: The complexity hypothesis
-
Jain R, Rivera MC, Lake JA. (1999). Horizontal gene transfer among genomes: the complexity hypothesis. Proc Natl Acad Sci 96: 3801-3806
-
(1999)
Proc Natl Acad Sci
, vol.96
, pp. 3801-3806
-
-
Jain, R.1
Rivera, M.C.2
Lake, J.A.3
-
71
-
-
61849087789
-
Horizontal gene transfer in prokaryotes shows differential preferences for metabolic and translational genes
-
Kanhere A, Vingron M. (2009). Horizontal gene transfer in prokaryotes shows differential preferences for metabolic and translational genes. BMC Evol Biol 9: 9
-
(2009)
BMC Evol Biol
, vol.9
, pp. 9
-
-
Kanhere, A.1
Vingron, M.2
-
72
-
-
0035432965
-
Molecular cloning nucleotide sequence and expression of genes encoding a polycyclic ring dioxygenase from mycobacterium sp strain pyr-1
-
Khan AA, Wang RF, Cao WW, Doerge DR, Wennerstrom D, Cerniglia CE. (2001). Molecular cloning nucleotide sequence and expression of genes encoding a polycyclic ring dioxygenase from Mycobacterium sp. strain PYR-1. Appl Environ Microbiol 67: 3577-3585
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 3577-3585
-
-
Khan, A.A.1
Wang, R.F.2
Cao, W.W.3
Doerge, D.R.4
Wennerstrom, D.5
Cerniglia, C.E.6
-
73
-
-
62549132572
-
Darwinian evolution in the light of genomics
-
Koonin EV. (2009). Darwinian evolution in the light of genomics. Nucleic Acids Res 37: 1011-1034
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1011-1034
-
-
Koonin, E.V.1
-
74
-
-
57549115252
-
The fate of new bacterial genes
-
Kuo CH, Ochman H. (2009). The fate of new bacterial genes. FEMS Microbiol Rev 33: 38-43
-
(2009)
Fems Microbiol Rev
, vol.33
, pp. 38-43
-
-
Kuo, C.H.1
Ochman, H.2
-
75
-
-
23044437168
-
What tangled web: Barriers to rampant horizontal gene transfer
-
Kurland CG. (2005). What tangled web: barriers to rampant horizontal gene transfer. Bioessays 27: 741-747
-
(2005)
Bioessays
, vol.27
, pp. 741-747
-
-
Kurland, C.G.1
-
77
-
-
61349194462
-
Estimating the size of the bacterial pan-genome
-
Lapierre P, Gogarten JP. (2009). Estimating the size of the bacterial pan-genome. Trends Genet 25: 107-110
-
(2009)
Trends Genet
, vol.25
, pp. 107-110
-
-
Lapierre, P.1
Gogarten, J.P.2
-
78
-
-
20444371027
-
Biodegradation and Rhodococcus masters of catabolic versatility
-
Larkin MJ, Kulakov La Allen CCR. (2005). Biodegradation and Rhodococcus masters of catabolic versatility. Curr Opin Biotechnol 16: 282-290
-
(2005)
Curr Opin Biotechnol
, vol.16
, pp. 282-290
-
-
Larkin, M.J.1
Kulakov La Allen, C.C.R.2
-
79
-
-
0036145420
-
Reconciling the many faces of lateral gene transfer
-
Lawrence JG, Ochman H. (2002). Reconciling the many faces of lateral gene transfer. Trends Microbiol 10: 1-4
-
(2002)
Trends Microbiol
, vol.10
, pp. 1-4
-
-
Lawrence, J.G.1
Ochman, H.2
-
80
-
-
0025180428
-
Microbial degradation of hydrocarbons in the environment
-
Leahy JG, Colwell RR. (1990). Microbial degradation of hydrocarbons in the environment. Microbiol Rev 54 (3): 305-315
-
(1990)
Microbiol Rev
, vol.54
, Issue.3
, pp. 305-315
-
-
Leahy, J.G.1
Colwell, R.R.2
-
81
-
-
21844434913
-
Evolutionary origins of genomic repertoires in bacteria
-
Lerat E, Daubin V, Ochman H, Moran NA. (2005). Evolutionary origins of genomic repertoires in bacteria. PLoS Biol 3: e130
-
(2005)
Plos Biol
, vol.3
, pp. e130
-
-
Lerat, E.1
Daubin, V.2
Ochman, H.3
Moran, N.A.4
-
82
-
-
39749192558
-
Integration of horizontally transferred genes into regulatory interaction networks takes many million years
-
Lercher MJ, Pal C. (2008). Integration of horizontally transferred genes into regulatory interaction networks takes many million years. Mol Biol Evol 25: 559-567
-
(2008)
Mol Biol Evol
, vol.25
, pp. 559-567
-
-
Lercher, M.J.1
Pal, C.2
-
83
-
-
0039898575
-
Transposable gene-activating elements in Pseudomonas cepacia
-
Silver S, Chakrabarty AM, Iglewski B, Kaplan S (eds) American Society for Microbiology, Washington DC
-
Lessie TG, Wood MS, Byrne A, Ferrante A. (1990). Transposable gene-activating elements in Pseudomonas cepacia. In: Silver S, Chakrabarty AM, Iglewski B, Kaplan S (eds) Pseudomonas: biotransformations pathogenesis and evolving biotechnology. American Society for Microbiology, Washington, DC, pp 279-292
-
(1990)
Pseudomonas: Biotransformations Pathogenesis and Evolving Biotechnology
, pp. 279-292
-
-
Lessie, T.G.1
Wood, M.S.2
Byrne, A.3
Ferrante, A.4
-
84
-
-
33947354590
-
Comparison of antimicrobial resistance of campylobacter jejuni isolated from humans chickens raw milk and environmental water in quebec
-
Levesque S, Frost E, Michaud S. (2007). Comparison of antimicrobial resistance of Campylobacter jejuni isolated from humans chickens raw milk and environmental water in Quebec. J Food Prot 70: 729-735
-
(2007)
J Food Prot
, vol.70
, pp. 729-735
-
-
Levesque, S.1
Frost, E.2
Michaud, S.3
-
85
-
-
77953635299
-
Biochemical principles of small RNA pathways
-
Liu Q, Paroo Z. (2010). Biochemical principles of small RNA pathways. Annu Rev Biochem 79: 295-319
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 295-319
-
-
Liu, Q.1
Paroo, Z.2
-
86
-
-
0032925832
-
Analysis of catabolic genes for naphthalene and phenanthrene degradation in contaminated New Zealand soils
-
Lloyd-Jones G, Laurie AD, Hunter DWF, Fraser R. (1999). Analysis of catabolic genes for naphthalene and phenanthrene degradation in contaminated New Zealand soils. FEMS Microbiol Ecol 29: 69-79
-
(1999)
Fems Microbiol Ecol
, vol.29
, pp. 69-79
-
-
Lloyd-Jones, G.1
Laurie, A.D.2
Hunter, D.W.F.3
Fraser, R.4
-
87
-
-
77957826921
-
The complete multipartite genome sequence of cupriavidus necator jmp134, a versatile pollutant degrader
-
Lykidis A, Pérez-Pantoja D, Ledger T, Mavromatis K, Anderson IJ et al. (2010). The complete multipartite genome sequence of cupriavidus necator jmp134, a versatile pollutant degrader. PLoS One 5 (3): e9729
-
(2010)
Plos One
, vol.5
, Issue.3
, pp. e9729
-
-
Lykidis, A.1
Pérez-Pantoja, D.2
Ledger, T.3
Mavromatis, K.4
Anderson, I.J.5
-
88
-
-
58149146987
-
Evolution and dissemination of betalactamases accelerated by generation of beta lactum antibiotics
-
Madeinos AA. (1997). Evolution and dissemination of betalactamases accelerated by generation of beta lactum antibiotics. Clin Infect Dis 29: 1419-1422
-
(1997)
Clin Infect Dis
, vol.29
, pp. 1419-1422
-
-
Madeinos, A.A.1
-
89
-
-
38349101832
-
Molecular detection of conjugative plasmids and antibiotic resistance genes in anthropogenic soils from Germany and India
-
Malik A, Celik E-K Bohn C, Boeckelmann U, Knobel K, Grohmann E. (2008). Molecular detection of conjugative plasmids and antibiotic resistance genes in anthropogenic soils from Germany and India. FEMS Microbiol Lett 279: 207-216
-
(2008)
Fems Microbiol Lett
, vol.279
, pp. 207-216
-
-
Malik, A.1
Celik, E.-K.2
Bohn, C.3
Boeckelmann, U.4
Knobel, K.5
Grohmann, E.6
-
90
-
-
40749101805
-
Gene amelioration demonstrated: The journey of nascent genes in bacteria
-
Marri PR, Golding GB. (2008). Gene amelioration demonstrated: the journey of nascent genes in bacteria. Genome 5: 164-168
-
(2008)
Genome
, vol.5
, pp. 164-168
-
-
Marri, P.R.1
Golding, G.B.2
-
91
-
-
67649199638
-
Commensals: Unappreciated reservoir of antibiotic resistance
-
Marshall BM, Ochieng DJ, Levy SB. (2009). Commensals: unappreciated reservoir of antibiotic resistance. Microbe 4: 231-238
-
(2009)
Microbe
, vol.4
, pp. 231-238
-
-
Marshall, B.M.1
Ochieng, D.J.2
Levy, S.B.3
-
92
-
-
0033082247
-
Mosaic bacterial chromosomes: A challenge en route to a tree of genomes
-
Martin W. (1999). Mosaic bacterial chromosomes: a challenge en route to a tree of genomes. Bioessays 21: 99-104
-
(1999)
Bioessays
, vol.21
, pp. 99-104
-
-
Martin, W.1
-
93
-
-
0032515790
-
Quinolone resistance from a transferable plasmid
-
Martinez-Martinez L, Pascnal A, Jacoby GA. (1998). Quinolone resistance from a transferable plasmid. Lancet 351: 797-799
-
(1998)
Lancet
, vol.351
, pp. 797-799
-
-
Martinez-Martinez, L.1
Pascnal, A.2
Jacoby, G.A.3
-
94
-
-
33750877119
-
Antibiotic resistance of enterococcus spp Isolated from wastewater and sludge of poultry slaughterhouses
-
Martins da Costa PM, Vaz-Pires PM, Bernardo FM. (2006). Antibiotic resistance of Enterococcus spp. isolated from wastewater and sludge of poultry slaughterhouses. J Environ Sci Health B 41: 1393-1403
-
(2006)
J Environ Sci Health B
, vol.41
, pp. 1393-1403
-
-
Martins Da Costa, P.M.1
Vaz-Pires, P.M.2
Bernardo, F.M.3
-
95
-
-
0019774547
-
Excision of the 40 kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats
-
Meulien P, Downing RG, Broda P. (1981). Excision of the 40 kb segment of the TOL plasmid from Pseudomonas putida mt-2 involves direct repeats. Mol Gen Genet 184: 97-101
-
(1981)
Mol Gen Genet
, vol.184
, pp. 97-101
-
-
Meulien, P.1
Downing, R.G.2
Broda, P.3
-
96
-
-
0034963502
-
Enzymes and operons mediating xenobiotic degradation in bacteria
-
Mishra V, Lal R, Srinivasan. (2001). Enzymes and operons mediating xenobiotic degradation in bacteria. Crit Rev Microbiol 27: 133-166
-
(2001)
Crit Rev Microbiol
, vol.27
, pp. 133-166
-
-
Mishra, V.1
Lal, R.2
Srinivasan3
-
97
-
-
0025159432
-
Three isozymes of catechol 12-dioxygenase (pyrocatechase) aa a1 and B3 from Pseudononas arvilla C-1
-
Nakai C, Horiike K, Kuramitsu S, Kagamilyama H, Nozaki M. (1990). Three isozymes of catechol 12-dioxygenase (pyrocatechase) aa a1 and B3 from Pseudononas arvilla C-1. J Biol Chem 265: 660-665
-
(1990)
J Biol Chem
, vol.265
, pp. 660-665
-
-
Nakai, C.1
Horiike, K.2
Kuramitsu, S.3
Kagamilyama, H.4
Nozaki, M.5
-
98
-
-
3042849253
-
Biased biological functions of horizontally transferred genes in prokaryotic genomes
-
Nakamura Y, Itoh T, Matsuda H, Gojobori T. (2004). Biased biological functions of horizontally transferred genes in prokaryotic genomes. Nat Genet 36: 760-766
-
(2004)
Nat Genet
, vol.36
, pp. 760-766
-
-
Nakamura, Y.1
Itoh, T.2
Matsuda, H.3
Gojobori, T.4
-
99
-
-
54049133380
-
Adaptative eukaryote-to-eukaryote lateral gene transfer: Stress-related genes of algal origin in the closest unicellular relatives of animals
-
Nedelcu AM, Miles IH, Fagir AM, Karol K. (2008). Adaptative eukaryote-to-eukaryote lateral gene transfer: stress-related genes of algal origin in the closest unicellular relatives of animals. J Evol Biol 21: 1852-1860
-
(2008)
J Evol Biol
, vol.21
, pp. 1852-1860
-
-
Nedelcu, A.M.1
Miles, I.H.2
Fagir, A.M.3
Karol, K.4
-
100
-
-
33947122820
-
The diversity of multi-drug resistance profiles in tetracycline- resistant Vibrio species isolated from coastal sediments and seawater
-
Neela FA, Nonaka L, Suzuki S. (2007). The diversity of multi-drug resistance profiles in tetracycline- resistant Vibrio species isolated from coastal sediments and seawater. J Microbiol 45: 64-68
-
(2007)
J Microbiol
, vol.45
, pp. 64-68
-
-
Neela, F.A.1
Nonaka, L.2
Suzuki, S.3
-
101
-
-
0024094638
-
DNA sequence of Acinetobacter calcoaceticus catechol 12-dioxygenase-I structural gene cat A: Evidence for evolutionary divergence of intradiol dioxygenases by acquisition of DNA sequence repetitions
-
Niedle EL, Harnett C, Bonitz S, Ornston LN. (1988). DNA sequence of Acinetobacter calcoaceticus catechol 12-dioxygenase-I structural gene cat A: evidence for evolutionary divergence of intradiol dioxygenases by acquisition of DNA sequence repetitions. J Bacteriol 170: 4874-4880
-
(1988)
J Bacteriol
, vol.170
, pp. 4874-4880
-
-
Niedle, E.L.1
Harnett, C.2
Bonitz, S.3
Ornston, L.N.4
-
102
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman H, Lawrence JG, Grolsman EA. (2000). Lateral gene transfer and the nature of bacterial innovation. Nature 405: 299-304
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Grolsman, E.A.3
-
103
-
-
12744281935
-
The extraction and Purification of microbial DNA from sediments
-
Ogram A, Sayler GS, Barkay T. (1987). The extraction and Purification of microbial DNA from sediments. J Microbiol Methods 7: 57-66
-
(1987)
J Microbiol Methods
, vol.7
, pp. 57-66
-
-
Ogram, A.1
Sayler, G.S.2
Barkay, T.3
-
104
-
-
77958003576
-
Molecular strategies of microbial adaptation to xenobiotics in natural environment
-
Ojo OA. (2007). Molecular strategies of microbial adaptation to xenobiotics in natural environment. Biotechnol Mol Biol Rev 2 (1): 001-013
-
(2007)
Biotechnol Mol Biol Rev
, vol.2
, Issue.1
, pp. 001-013
-
-
Ojo, O.A.1
-
105
-
-
0021024812
-
Evolutionary adaptation of plasmid-encoded enzymes for degrading nylon oligomers
-
Okada H, Negoro S, Kimura H, Nakamura S. (1983). Evolutionary adaptation of plasmid-encoded enzymes for degrading nylon oligomers. Nature (London) 306: 203-206
-
(1983)
Nature (London
, vol.306
, pp. 203-206
-
-
Okada, H.1
Negoro, S.2
Kimura, H.3
Nakamura, S.4
-
106
-
-
34147183821
-
Complete genome sequence of the erythromycin-producing bacterium saccharopolyspora erythraea nrrl23338
-
Oliynyk M, Samborskyy M, Lester JB, Mironenko T, Scott N, Dickens S, Haydock SF, Leadlay PF. (2007). Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338. Nat Biotechnol 25: 447-453
-
(2007)
Nat Biotechnol
, vol.25
, pp. 447-453
-
-
Oliynyk, M.1
Samborskyy, M.2
Lester, J.B.3
Mironenko, T.4
Scott, N.5
Dickens, S.6
Haydock, S.F.7
Leadlay, P.F.8
-
107
-
-
27544449355
-
Horizontal gene transfer depends on gene content of the host
-
Pal C, Papp B, Lercher MJ. (2005). Horizontal gene transfer depends on gene content of the host. Bioinformatics 21 (S2): 222-223
-
(2005)
Bioinformatics
, vol.21
, Issue.S2
, pp. 222-223
-
-
Pal, C.1
Papp, B.2
Lercher, M.J.3
-
108
-
-
0025357079
-
Organization and sequence analysis of the 24-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4
-
Perkins EJ, Gordon MP, Caceres O, Lurquin PF. (1990). Organization and sequence analysis of the 24-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4. J Bacteriol 172: 2351-2359
-
(1990)
J Bacteriol
, vol.172
, pp. 2351-2359
-
-
Perkins, E.J.1
Gordon, M.P.2
Caceres, O.3
Lurquin, P.F.4
-
109
-
-
0000227066
-
Endogenous antimicrobial molecules: An ecological perspective
-
Sussman M (ed) Academic, New York
-
Piepersberg W. (2001). Endogenous antimicrobial molecules: an ecological perspective. In: Sussman M (ed) Molecular medical microbiology, vol 1. Academic, New York, pp 561-585
-
(2001)
Molecular Medical Microbiology
, vol.1
, pp. 561-585
-
-
Piepersberg, W.1
-
110
-
-
36549087172
-
Do we need an extended evolutionary synthesis?
-
Pigliucci M. (2007). Do we need an extended evolutionary synthesis?. Evolution 61: 2743-2749
-
(2007)
Evolution
, vol.61
, pp. 2743-2749
-
-
Pigliucci, M.1
-
111
-
-
22444441190
-
Operon formation is driven by co-regulation and not by horizontal gene transfer
-
Price MN et al. (2005). Operon formation is driven by co-regulation and not by horizontal gene transfer. Genome Res 15: 809-819
-
(2005)
Genome Res
, vol.15
, pp. 809-819
-
-
Price, M.N.1
-
112
-
-
40149098889
-
Horizontal gene transfer and the evolution of transcriptional regulation in escherichia coli
-
Price MN, Dehal PS, Arkin AP. (2008). Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli. Genome Biol 9: R4
-
(2008)
Genome Biol
, vol.9
, pp. R4
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
113
-
-
0035989433
-
Distributional profiles of homologous open reading frames among bacterial phyla: Implications for vertical and lateral transmission
-
Ragan MA, Charlebois RL. (2002). Distributional profiles of homologous open reading frames among bacterial phyla: implications for vertical and lateral transmission. Int J Syst Evol Microbiol 52: 777-787
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 777-787
-
-
Ragan, M.A.1
Charlebois, R.L.2
-
114
-
-
58149168869
-
Emerging antibiotic resistance in bacteria with special reference to India
-
Raghunath D. (2008). Emerging antibiotic resistance in bacteria with special reference to India. J Biosci 33: 593-603
-
(2008)
J Biosci
, vol.33
, pp. 593-603
-
-
Raghunath, D.1
-
115
-
-
77953922892
-
Strategies to insulate lentiviral vector-expressed transgenes
-
Ramezani A, Hawley RG. (2010). Strategies to insulate lentiviral vector-expressed transgenes. Methods Mol Biol 614: 77-100
-
(2010)
Methods Mol Biol
, vol.614
, pp. 77-100
-
-
Ramezani, A.1
Hawley, R.G.2
-
116
-
-
44649127567
-
The dynamics of soil bacterial community structure in response to yearly repeated agricultural copper treatments
-
Raniard L, Nowak V, Echairi A, Faloya V, Chaussod R. (2008). The dynamics of soil bacterial community structure in response to yearly repeated agricultural copper treatments. Res Microbiol 159: 251-254
-
(2008)
Res Microbiol
, vol.159
, pp. 251-254
-
-
Raniard, L.1
Nowak, V.2
Echairi, A.3
Faloya, V.4
Chaussod, R.5
-
117
-
-
0020003601
-
TOL plasmid in constructed halo benzoate-degrading Pseudomonas strains: Prevention of meta pathway
-
Reineke W, Jeenes DJ, Williams PA, Knackmuss HA. (1982). TOL plasmid in constructed halo benzoate-degrading Pseudomonas strains: prevention of meta pathway. J Bacteriol 150: 195-201
-
(1982)
J Bacteriol
, vol.150
, pp. 195-201
-
-
Reineke, W.1
Jeenes, D.J.2
Williams, P.A.3
Knackmuss, H.A.4
-
118
-
-
0037743892
-
Retroids in archaea: Phylogeny and lateral origin
-
Rest JS, Mindell DP. (2003). Retroids in archaea: phylogeny and lateral origin. Mol Biol Evol 20: 1134-1142
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1134-1142
-
-
Rest, J.S.1
Mindell, D.P.2
-
119
-
-
4344587758
-
Uncultured soil bacteria are a reservoir of new antibiotic resistance genes
-
Riesenfeld CS, Goodman RM, Handelsman J. (2004). Uncultured soil bacteria are a reservoir of new antibiotic resistance genes. Environ Microbiol 6: 981-989
-
(2004)
Environ Microbiol
, vol.6
, pp. 981-989
-
-
Riesenfeld, C.S.1
Goodman, R.M.2
Handelsman, J.3
-
120
-
-
55049138544
-
Evolutionary patterns in prokaryotic genomes
-
Rocha EPC. (2008). Evolutionary patterns in prokaryotic genomes. Curr Opin Microbiol 11: 454-460
-
(2008)
Curr Opin Microbiol
, vol.11
, pp. 454-460
-
-
Rocha, E.P.C.1
-
121
-
-
0034329572
-
Two component systems in Pseudomonas aeruginosa: Why so many?
-
Rodrigue A, Quentin Y, Lazdunski A, Mejean V, Foglino M. (2000). Two component systems in Pseudomonas aeruginosa: why so many?. Trends Microbiol 8: 498-504
-
(2000)
Trends Microbiol
, vol.8
, pp. 498-504
-
-
Rodrigue, A.1
Quentin, Y.2
Lazdunski, A.3
Mejean, V.4
Foglino, M.5
-
122
-
-
0023629714
-
Survival strategies of bacteria in the natural environment
-
Roszak DB, Colwell RR. (1987). Survival strategies of bacteria in the natural environment. Microbiol Rev 51: 365-379
-
(1987)
Microbiol Rev
, vol.51
, pp. 365-379
-
-
Roszak, D.B.1
Colwell, R.R.2
-
123
-
-
0033545659
-
Bacterial evolution: Bacteria play pass the gene
-
Saunders NJ, Hood DW, Moxon ER. (1999). Bacterial evolution: bacteria play pass the gene. Curr Biol 9: R180-R183
-
(1999)
Curr Biol
, vol.9
, pp. R180-R183
-
-
Saunders, N.J.1
Hood, D.W.2
Moxon, E.R.3
-
124
-
-
0025073102
-
Transduction of linked chromosomal genes between pseudomonas aeruginosa strains during incubation in situ in a fresh water habitat
-
Saye DJ, Ogunseitan OA, Sayler GS, Miller RV. (1990). Transduction of linked chromosomal genes between Pseudomonas aeruginosa strains during incubation in situ in a fresh water habitat. Appl Environ Microbiol 56: 140-145
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 140-145
-
-
Saye, D.J.1
Ogunseitan, O.A.2
Sayler, G.S.3
Miller, R.V.4
-
125
-
-
0021848481
-
Application of DNA-DNA colony hybridization to the detection of catabolic genotypes in environmental samples
-
Sayler GS, Shields MS, Tedford ET, Breen A, Hooper SW, Sirotkin KM, Davis JW. (1985). Application of DNA-DNA colony hybridization to the detection of catabolic genotypes in environmental samples. Appl Environ Microbiol 49: 1295-1303
-
(1985)
Appl Environ Microbiol
, vol.49
, pp. 1295-1303
-
-
Sayler, G.S.1
Shields, M.S.2
Tedford, E.T.3
Breen, A.4
Hooper, S.W.5
Sirotkin, K.M.6
Davis, J.W.7
-
126
-
-
85193167019
-
-
6th edn. Cambridge University Press New York
-
Schlegel HG. (1986). Xenobiotics. In: General microbiology, 6th edn. Cambridge University Press, New York, p 433
-
(1986)
Xenobiotics General Microbiology
, pp. 433
-
-
Schlegel, H.G.1
-
127
-
-
33745076815
-
Tetracyclines and tetracycline resistance in agricultural soils: Microcosm and field studies
-
Schmitt H, Stoob K, Hamscher G, Smit E, Seinen W. (2006). Tetracyclines and tetracycline resistance in agricultural soils: microcosm and field studies. Microb Ecol 51: 267-276
-
(2006)
Microb Ecol
, vol.51
, pp. 267-276
-
-
Schmitt, H.1
Stoob, K.2
Hamscher, G.3
Smit, E.4
Seinen, W.5
-
128
-
-
0025896125
-
Degradation of 2-methylaniline in Rhodococcus rhodochrous: Cloning and expression of two clustered catechol 2,3-dioxygenase genes from strain CTM
-
Schreiner A, Fuchs K, Lottspeich F, Poth H, Lingens F. (1991). Degradation of 2-methylaniline in Rhodococcus rhodochrous: cloning and expression of two clustered catechol 2,3-dioxygenase genes from strain CTM. J Gen Microbiol 137: 2041-2048
-
(1991)
J Gen Microbiol
, vol.137
, pp. 2041-2048
-
-
Schreiner, A.1
Fuchs, K.2
Lottspeich, F.3
Poth, H.4
Lingens, F.5
-
129
-
-
75549087004
-
Comparative genomics of pAKD4, the prototype IncP-1 δ plasmid with a complete backbone
-
Sen D, Yano H, Suzuki H, Krsl JE, Rogers L, Brown CJ, Top EM. (2010). Comparative genomics of pAKD4, the prototype IncP-1 δ plasmid with a complete backbone. Plasmid 63 (2): 98
-
(2010)
Plasmid
, vol.63
, Issue.2
, pp. 98
-
-
Sen, D.1
Yano, H.2
Suzuki, H.3
Król, J.E.4
Rogers, L.5
Brown, C.J.6
Top, E.M.7
-
130
-
-
0035350114
-
Characterization of the 450-kb linear plasmid in a polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1
-
Shimizu S, Kobayashi H, Masai E, Fuduka M. (2001). Characterization of the 450-kb linear plasmid in a polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1. Appl Environ Microbiol 67: 2021-2022
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2021-2022
-
-
Shimizu, S.1
Kobayashi, H.2
Masai, E.3
Fuduka, M.4
-
131
-
-
71949101174
-
Microbial transformation of xenobiotics for environmental bioremediation
-
Sinha S, Chattopadhyay P, Pan I, Chatterjee S, Chanda P, Bandyopadhyay D, Das K, Sen SK. (2009). Microbial transformation of xenobiotics for environmental bioremediation. Afr J Biotechnol 8 (22): 6016-6027
-
(2009)
Afr J Biotechnol
, vol.8
, Issue.22
, pp. 6016-6027
-
-
Sinha, S.1
Chattopadhyay, P.2
Pan, I.3
Chatterjee, S.4
Chanda, P.5
Bandyopadhyay, D.6
Das, K.7
Sen, S.K.8
-
132
-
-
36249021315
-
Genome-wide experimental determination of barriers to horizontal gene transfer
-
Sorek R, Zhu Y, Creevey CJ, Francino MP, Bork P, Rubin EM. (2007). Genome-wide experimental determination of barriers to horizontal gene transfer. Science 318: 1449-1452
-
(2007)
Science
, vol.318
, pp. 1449-1452
-
-
Sorek, R.1
Zhu, Y.2
Creevey, C.J.3
Francino, M.P.4
Bork, P.5
Rubin, E.M.6
-
133
-
-
23944484031
-
Studying plasmid horizontal transfer in situ: A critical review
-
Sorensen SJ, Bailey M, Hansen LH, Kroer N, Wuertz S. (2005). Studying plasmid horizontal transfer in situ: a critical review. Nat Rev Microbiol 3: 700-710
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 700-710
-
-
Sorensen, S.J.1
Bailey, M.2
Hansen, L.H.3
Kroer, N.4
Wuertz, S.5
-
134
-
-
0020660931
-
Adaptation of natural microbial communities to degradation of xenobiotic compounds: Effects of concentration exposure time inoculum and chemical structure
-
Spain JC, Van Veld PA. (1983). Adaptation of natural microbial communities to degradation of xenobiotic compounds: effects of concentration exposure time inoculum and chemical structure. Appl Environ Microbiol 45: 428-435
-
(1983)
Appl Environ Microbiol
, vol.45
, pp. 428-435
-
-
Spain, J.C.1
Van Veld, P.A.2
-
135
-
-
0842303297
-
Horizontal gene transfer and microbial adaptation to xenobiotics: New types of mobile genetic elements and lessons from ecological studies
-
Springael D, Top EM. (2004). Horizontal gene transfer and microbial adaptation to xenobiotics: new types of mobile genetic elements and lessons from ecological studies. Trends Microbiol 12 (2): 53-58
-
(2004)
Trends Microbiol
, vol.12
, Issue.2
, pp. 53-58
-
-
Springael, D.1
Top, E.M.2
-
136
-
-
33746701461
-
Coselection for microbial resistance to metals and antibiotics in freshwater microcosms
-
Stepanauskas R, Glenn TC, Jagoe CH, Tuck field RC, Lindell AH, King CJ, McArthur JV. (2006). Coselection for microbial resistance to metals and antibiotics in freshwater microcosms. Environ Microbiol 8: 1510-1514
-
(2006)
Environ Microbiol
, vol.8
, pp. 1510-1514
-
-
Stepanauskas, R.1
Glenn, T.C.2
Jagoe, C.H.3
Tuckfield, R.C.4
Lindell, A.H.5
King, C.J.6
McArthur, J.V.7
-
137
-
-
0030620272
-
Role of mutator alleles in adaptive evolution
-
Taddei F, Radman M, Maynard-Smith J, Toupance B, Gouyon PH, Godelle B. (1997). Role of mutator alleles in adaptive evolution. Nature 387: 700-702
-
(1997)
Nature
, vol.387
, pp. 700-702
-
-
Taddei, F.1
Radman, M.2
Maynard-Smith, J.3
Toupance, B.4
Gouyon, P.H.5
Godelle, B.6
-
138
-
-
25444524604
-
Genome analysis of multiple pathogenic isolates of Streptococus agalactiae: Implications for the microbial 'pan-genome
-
Tettelin H et al. (2005). Genome analysis of multiple pathogenic isolates of Streptococus agalactiae: implications for the microbial 'pan-genome'. Proc Natl Acad Sci 102: 13950-13955
-
(2005)
Proc Natl Acad Sci
, vol.102
, pp. 13950-13955
-
-
Tettelin, H.1
-
140
-
-
0038820052
-
The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds
-
Top EM, Springael D. (2003). The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds. Curr Opin Biotechnol 14 (3): 262-269
-
(2003)
Curr Opin Biotechnol
, vol.14
, Issue.3
, pp. 262-269
-
-
Top, E.M.1
Springael, D.2
-
141
-
-
0036848574
-
Catabolic mobile genetic elements and their possible use in bioaugmentation of polluted soils and waters
-
Top EM et al. (2002). Catabolic mobile genetic elements and their possible use in bioaugmentation of polluted soils and waters. FEMS Microbiol Ecol 42: 199-208
-
(2002)
Fems Microbiol Ecol
, vol.42
, pp. 199-208
-
-
Top, E.M.1
-
142
-
-
0022384660
-
DNA probes for the detection of specific genes in bacteria isolated from the environment
-
Trevors JT. (1985). DNA probes for the detection of specific genes in bacteria isolated from the environment. Trends Biotechnol 3: 291-293
-
(1985)
Trends Biotechnol
, vol.3
, pp. 291-293
-
-
Trevors, J.T.1
-
143
-
-
0023504678
-
Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWWO
-
Tsuda M, Iino T. (1987). Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWWO. Mol Gen Genet 210: 270-276
-
(1987)
Mol Gen Genet
, vol.210
, pp. 270-276
-
-
Tsuda, M.1
Iino, T.2
-
144
-
-
0024046404
-
Identification and characterization of Tn4653 a transposon covering the toluene transposon Tn4651 on TOL plasmid pWWO
-
Tsuda M, Iino T. (1988). Identification and characterization of Tn4653 a transposon covering the toluene transposon Tn4651 on TOL plasmid pWWO. Mol Gen Genet 213: 72-77
-
(1988)
Mol Gen Genet
, vol.213
, pp. 72-77
-
-
Tsuda, M.1
Iino, T.2
-
145
-
-
0025073507
-
Naphthalene degrading genes on plasmid NAH7 are on a defective transposon
-
Tsuda M, Iino T. (1990). Naphthalene degrading genes on plasmid NAH7 are on a defective transposon. Mol Gen Genet 223: 33-39
-
(1990)
Mol Gen Genet
, vol.223
, pp. 33-39
-
-
Tsuda, M.1
Iino, T.2
-
146
-
-
0024574036
-
Toluene transposons Tn4651 and Tn4653 are class II transposons
-
Tsuda M, Minegishi KI, Iino T. (1989). Toluene transposons Tn4651 and Tn4653 are class II transposons. J Bacteriol 171: 1386-1393
-
(1989)
J Bacteriol
, vol.171
, pp. 1386-1393
-
-
Tsuda, M.1
Minegishi, K.I.2
Iino, T.3
-
147
-
-
0032936104
-
Mobile catabolic genes in bacteria
-
Tsuda M et al. (1999). Mobile catabolic genes in bacteria. J Biosci Bioeng 87: 401-410
-
(1999)
J Biosci Bioeng
, vol.87
, pp. 401-410
-
-
Tsuda, M.1
-
148
-
-
12944325784
-
One-component systems dominate signal transduction in prokaryotes
-
Ulrich LE, Koonin EV, Zhulin IB. (2005). One-component systems dominate signal transduction in prokaryotes. Trends Microbiol 13: 52-56
-
(2005)
Trends Microbiol
, vol.13
, pp. 52-56
-
-
Ulrich, L.E.1
Koonin, E.V.2
Zhulin, I.B.3
-
149
-
-
0025806414
-
Sequence analysis of pseudomonas sp strain p51 tcb gene cluster which encodes metabolism of chlorinated catecols: Evidence for specialization of catecol 1 2-dioxygenases for chlorinated substrates
-
Van Der Meer JR, Eggen RIL, Zehnder AJB, De Vos WM. (1991). Sequence analysis of Pseudomonas sp. Strain P51 tcb gene cluster which encodes metabolism of chlorinated catecols: evidence for specialization of catecol 1 2-dioxygenases for chlorinated substrates. J Bacteriol 173: 2425-2434
-
(1991)
J Bacteriol
, vol.173
, pp. 2425-2434
-
-
Van Der Meer, J.R.1
Eggen, R.I.L.2
Zehnder, A.J.B.3
De Vos, W.M.4
-
150
-
-
6044272942
-
The completely sequenced plasmid pest4011 contains a novel incp1 backbone and a catabolic transposon harboring tfd genes for 2, 4-dichlorophenoxyacetic acid degradation
-
Vedler E, Vahter M, Heinaru A. (2004). The completely sequenced plasmid pest4011 contains a novel incp1 backbone and a catabolic transposon harboring tfd genes for 2, 4-dichlorophenoxyacetic acid degradation. J Bacteriol 186 (21): 7161-7174
-
(2004)
J Bacteriol
, vol.186
, Issue.21
, pp. 7161-7174
-
-
Vedler, E.1
Vahter, M.2
Heinaru, A.3
-
151
-
-
54349125857
-
Distant horizontal gene transfer is rare for multiple families of prokaryotic insertion sequences
-
Wagner A, De La Chaux N. (2008). Distant horizontal gene transfer is rare for multiple families of prokaryotic insertion sequences. Mol Genet Genomics 280: 397-408
-
(2008)
Mol Genet Genomics
, vol.280
, pp. 397-408
-
-
Wagner, A.1
De La Chaux, N.2
-
153
-
-
33845371571
-
The frequency of eubacterium-to-eukaryote lateral gene transfer shows signi fi cant cross-taxa variation within amoebozoa
-
Watkins RF, Gray MW. (2006). The frequency of eubacterium-to-eukaryote lateral gene transfer shows signi fi cant cross-taxa variation within amoebozoa. J Mol Evol 63: 801-814
-
(2006)
J Mol Evol
, vol.63
, pp. 801-814
-
-
Watkins, R.F.1
Gray, M.W.2
-
154
-
-
0242669334
-
Gene cloning and characterization of multiple alkanehydroxylase systems in Rhodococcus strains Q15 and NRRLB-16531
-
Whyte LG, Smits THM, Labbe D, Witholt B, Greer CW, Van Beilen JB. (2002). Gene cloning and characterization of multiple alkanehydroxylase systems in Rhodococcus strains Q15 and NRRLB-16531. Appl Environ Microbiol 68: 5933-5942
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5933-5942
-
-
Whyte, L.G.1
Smits, T.H.M.2
Labbe, D.3
Witholt, B.4
Greer, C.W.5
Van Beilen, J.B.6
-
155
-
-
0025079999
-
Construction of hybrid xylE genes between the two duplicate homologous genes from TOL plasmid pWW53: Comparison of the kinetic properties of the gene products
-
Williams PA, Assinder SJ, Shaw LE. (1990). Construction of hybrid xylE genes between the two duplicate homologous genes from TOL plasmid pWW53: comparison of the kinetic properties of the gene products. J Gen Microbiol 136: 1583-1589
-
(1990)
J Gen Microbiol
, vol.136
, pp. 1583-1589
-
-
Williams, P.A.1
Assinder, S.J.2
Shaw, L.E.3
-
156
-
-
0036400593
-
Histidine protein kinases: Key signal transducers outside the animal kingdom
-
Wolanin PM, Thomason PA, Stock JB. (2002). Histidine protein kinases: key signal transducers outside the animal kingdom. Genome Biol 3: R3013
-
(2002)
Genome Biol
, vol.3
, pp. R3013
-
-
Wolanin, P.M.1
Thomason, P.A.2
Stock, J.B.3
-
158
-
-
33847151750
-
The antibiotic resistome: The nexus of chemical and genetic diversity
-
Wright GD. (2007). The antibiotic resistome: the nexus of chemical and genetic diversity. Nat Rev Microbiol 5: 175-186
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 175-186
-
-
Wright, G.D.1
-
159
-
-
77956548642
-
Complete nucleotide sequence of tol plasmid pdk1 provides evidence for evolutionary history of incp-7 catabolic plasmids
-
Yano H, Miyakoshi M, Ohshima K, Tabata M, Nagata Y, Hattori M, Tsuda M. (2010). Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids. J Bacteriol 192 (17): 4337-4347
-
(2010)
J Bacteriol
, vol.192
, Issue.17
, pp. 4337-4347
-
-
Yano, H.1
Miyakoshi, M.2
Ohshima, K.3
Tabata, M.4
Nagata, Y.5
Hattori, M.6
Tsuda, M.7
-
160
-
-
33748277982
-
Phylogenetic analyses of cyanobacterial genomes: Quanti fication of horizontal gene transfer events
-
Zhaxybayeva O, Gogarten JP, Charlebois RL, Doolittle WF, Papke RT. (2006). Phylogenetic analyses of cyanobacterial genomes: quanti fication of horizontal gene transfer events. Genome Res 16: 1099-1108
-
(2006)
Genome Res
, vol.16
, pp. 1099-1108
-
-
Zhaxybayeva, O.1
Gogarten, J.P.2
Charlebois, R.L.3
Doolittle, W.F.4
Papke, R.T.5
-
161
-
-
65249126970
-
On the chimeric nature thermophilic origin and phylogenetic placement of the thermotogales
-
Zhaxybayeva O et al. (2009). On the chimeric nature thermophilic origin and phylogenetic placement of the Thermotogales. Proc Natl Acad Sci 106: 5865-5870
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 5865-5870
-
-
Zhaxybayeva, O.1
|