메뉴 건너뛰기




Volumn 18, Issue 9, 2002, Pages 472-479

Genome trees and the tree of life

Author keywords

[No Author keywords available]

Indexed keywords

COMPARATIVE STUDY; GENE LOSS; GENE SEQUENCE; GENOME ANALYSIS; HORIZONTAL GENE TRANSFER; NONHUMAN; PHYLOGENETIC TREE; PRIORITY JOURNAL; PROKARYOTE; REVIEW; VALIDATION PROCESS;

EID: 0036719929     PISSN: 01689525     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-9525(02)02744-0     Document Type: Review
Times cited : (293)

References (52)
  • 6
    • 0028055018 scopus 로고
    • The winds of (evolutionary) change: Breathing new life into microbiology
    • (1994) J. Bacteriol. , vol.176 , pp. 1-6
    • Olsen, G.J.1
  • 9
    • 0030868589 scopus 로고    scopus 로고
    • Comparison of archaeal and bacterial genomes: Computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea
    • (1997) Mol. Microbiol. , vol.25 , pp. 619-637
    • Koonin, E.V.1
  • 10
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • (1999) Science , vol.284 , pp. 2124-2129
    • Doolittle, W.F.1
  • 15
    • 0035162592 scopus 로고    scopus 로고
    • The COG database: New developments in phylogenetic classification of proteins from complete genomes
    • (2001) Nucleic Acids Res. , vol.29 , pp. 22-28
    • Tatusov, R.L.1
  • 16
    • 0036143446 scopus 로고    scopus 로고
    • Genomes in flux: The evolution of archaeal and proteobacterial gene content
    • (2002) Genome Res. , vol.12 , pp. 17-25
    • Snel, B.1
  • 18
    • 0034831587 scopus 로고    scopus 로고
    • Defining the core of nontransferable prokaryotic genes: The euryarchaeal core
    • (2001) J. Mol. Evol. , vol.53 , pp. 340-350
    • Nesbo, C.L.1
  • 19
    • 0033591094 scopus 로고    scopus 로고
    • Is it time to uproot the tree of life?
    • (1999) Science , vol.284 , pp. 1305-1307
    • Pennisi, E.1
  • 21
  • 22
    • 0000298267 scopus 로고    scopus 로고
    • Lateral gene transfer, genome surveys, and the phylogeny of prokaryotes
    • (1999) Science , vol.286
    • Huynen, M.A.1
  • 23
  • 24
    • 0032778047 scopus 로고    scopus 로고
    • The genomic tree as revealed from whole proteome comparisons
    • (1999) Genome Res. , vol.9 , pp. 550-557
    • Tekaia, F.1
  • 27
    • 0033918311 scopus 로고    scopus 로고
    • Whole-genome trees based on the occurrence of folds and orthologs: Implications for comparing genomes on different levels
    • (2000) Genome Res. , vol.10 , pp. 808-818
    • Lin, J.1    Gerstein, M.2
  • 28
    • 0034572821 scopus 로고    scopus 로고
    • Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)
    • RESEARCH0009
    • (2000) Genome Biol.
    • Natale, D.A.1
  • 29
    • 0348044549 scopus 로고    scopus 로고
    • Genome trees constructed using five different approaches suggest new major bacterial clades
    • (2001) BMC Evol. Biol. , vol.1 , pp. 8
    • Wolf, Y.I.1
  • 30
    • 0036210883 scopus 로고    scopus 로고
    • Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores
    • (2002) J. Bacteriol. , vol.184 , pp. 2072-2080
    • Clarke, G.D.1
  • 31
    • 0033008596 scopus 로고    scopus 로고
    • Distribution of protein folds in the three superkingdoms of life
    • (1999) Genome Res. , vol.9 , pp. 17-26
    • Wolf, Y.I.1
  • 32
    • 0000298267 scopus 로고    scopus 로고
    • Lateral gene transfer, genome surveys, and the phylogeny of prokaryotes
    • (1999) Science , vol.286
    • Doolittle, W.F.1
  • 34
    • 0035085816 scopus 로고    scopus 로고
    • Genome alignment, evolution of prokaryotic genome organization and prediction of gene function using genomic context
    • (2001) Genome Res. , vol.11 , pp. 356-372
    • Wolf, Y.I.1
  • 36
  • 37
    • 0033858110 scopus 로고    scopus 로고
    • From complete genomes to measures of substitution rate variability within and between proteins
    • (2000) Genome Res. , vol.10 , pp. 991-1000
    • Grishin, N.V.1
  • 38
    • 0033859839 scopus 로고    scopus 로고
    • Phylogeny of 33 ribosomal and six other proteins encoded in an ancient gene cluster that is conserved across prokaryotic genomes: Influence of excluding poorly alignable sites from analysis
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 1655-1663
    • Hansmann, S.1    Martin, W.2
  • 39
    • 0034942865 scopus 로고    scopus 로고
    • Universal trees based on large combined protein sequence data sets
    • (2001) Nat. Genet. , vol.28 , pp. 281-285
    • Brown, J.R.1
  • 46
    • 0027104018 scopus 로고
    • Matrix representation in reconstructing phylogenetic relationships among the eukaryotes
    • (1992) Biosystems , vol.28 , pp. 47-55
    • Ragan, M.A.1
  • 48


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.