메뉴 건너뛰기




Volumn 11, Issue 5, 2008, Pages 472-477

Comparative genomics: the bacterial pan-genome

Author keywords

[No Author keywords available]

Indexed keywords

BACILLUS ANTHRACIS; BACILLUS CEREUS; BACTERIAL GENOME; ESCHERICHIA COLI; GENE FREQUENCY; GENE SEQUENCE; GENETIC MODEL; GENETIC SELECTION; GENOME ANALYSIS; HAEMOPHILUS INFLUENZAE; NONHUMAN; PROCHLOROCOCCUS; REVIEW; SPECIES DIVERSITY; STAPHYLOCOCCUS AUREUS; STREPTOCOCCUS AGALACTIAE; STREPTOCOCCUS PYOGENES; UREAPLASMA UREALYTICUM;

EID: 55049125445     PISSN: 13695274     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mib.2008.09.006     Document Type: Review
Times cited : (751)

References (20)
  • 2
    • 35349003200 scopus 로고    scopus 로고
    • Bacterial pathogenomics
    • Pallen M.J., and Wren B.W. Bacterial pathogenomics. Nature 449 (2007) 835-842
    • (2007) Nature , vol.449 , pp. 835-842
    • Pallen, M.J.1    Wren, B.W.2
  • 3
    • 25444524604 scopus 로고    scopus 로고
    • Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial 'pan-genome'
    • The first description of a pan-genome analysis, the exponential regression was used to fit the data.
    • Tettelin H., Masignani V., Cieslewicz M.J., Donati C., Medini D., Ward N.L., Angiuoli S.V., Crabtree J., Jones A.L., Durkin A.S., et al. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial 'pan-genome'. Proc Natl Acad Sci U S A 102 (2005) 13950-13955. The first description of a pan-genome analysis, the exponential regression was used to fit the data.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 13950-13955
    • Tettelin, H.1    Masignani, V.2    Cieslewicz, M.J.3    Donati, C.4    Medini, D.5    Ward, N.L.6    Angiuoli, S.V.7    Crabtree, J.8    Jones, A.L.9    Durkin, A.S.10
  • 4
    • 36549029848 scopus 로고    scopus 로고
    • Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains
    • 10.1186/gb-2007-1188-1186-r1103. The second pan-genome model that takes into account the distribution of individual genes among the genomes studied.
    • Hogg J.S., Hu F.Z., Janto B., Boissy R., Hayes J., Keefe R., Post J.C., and Ehrlich G.D. Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains. Genome Biol (2007) 8 10.1186/gb-2007-1188-1186-r1103. The second pan-genome model that takes into account the distribution of individual genes among the genomes studied.
    • (2007) Genome Biol , pp. 8
    • Hogg, J.S.1    Hu, F.Z.2    Janto, B.3    Boissy, R.4    Hayes, J.5    Keefe, R.6    Post, J.C.7    Ehrlich, G.D.8
  • 5
    • 4744351583 scopus 로고    scopus 로고
    • Molecular pathogenesis of neonatal group B streptococcal infection: no longer in its infancy
    • Doran K.S., and Nizet V. Molecular pathogenesis of neonatal group B streptococcal infection: no longer in its infancy. Mol Microbiol 54 (2004) 23-31
    • (2004) Mol Microbiol , vol.54 , pp. 23-31
    • Doran, K.S.1    Nizet, V.2
  • 6
    • 0028625310 scopus 로고
    • Epidemiology of group B streptococcal disease. Risk factors, prevention strategies, and vaccine development
    • Schuchat A., and Wenger J.D. Epidemiology of group B streptococcal disease. Risk factors, prevention strategies, and vaccine development. Epidemiol Rev 16 (1994) 374-402
    • (1994) Epidemiol Rev , vol.16 , pp. 374-402
    • Schuchat, A.1    Wenger, J.D.2
  • 8
    • 34548846699 scopus 로고    scopus 로고
    • Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition
    • Application of the pan-genome analysis.
    • Lefebure T., and Stanhope M.J. Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition. Genome Biol 8 (2007) R71. Application of the pan-genome analysis.
    • (2007) Genome Biol , vol.8
    • Lefebure, T.1    Stanhope, M.J.2
  • 9
    • 42149108463 scopus 로고    scopus 로고
    • Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitides
    • Application of the pan-genome analysis.
    • Schoen C., Blom J., Claus H., Schramm-Gluck A., Brandt P., Muller T., Goesmann A., Joseph B., Konietzny S., Kurzai O., et al. Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitides. Proc Natl Acad Sci U S A 105 (2008) 3473-3478. Application of the pan-genome analysis.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 3473-3478
    • Schoen, C.1    Blom, J.2    Claus, H.3    Schramm-Gluck, A.4    Brandt, P.5    Muller, T.6    Goesmann, A.7    Joseph, B.8    Konietzny, S.9    Kurzai, O.10
  • 10
    • 40449093894 scopus 로고    scopus 로고
    • Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray
    • Application of the pan-genome analysis.
    • Willenbrock H., Hallin P.F., Wassenaar T.M., and Ussery D.W. Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray. Genome Biol 8 (2007) R267. Application of the pan-genome analysis.
    • (2007) Genome Biol , vol.8
    • Willenbrock, H.1    Hallin, P.F.2    Wassenaar, T.M.3    Ussery, D.W.4
  • 11
    • 53849104729 scopus 로고    scopus 로고
    • The pan-genome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
    • Application of the pan-genome analysis.
    • Rasko D.A., Rosovitz M.J., Myers G.S., Mongodin E.F., Fricke W.F., Gajer P., Crabtree J., Sperandio V., and Ravel J. The pan-genome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol (2008). Application of the pan-genome analysis.
    • (2008) J Bacteriol
    • Rasko, D.A.1    Rosovitz, M.J.2    Myers, G.S.3    Mongodin, E.F.4    Fricke, W.F.5    Gajer, P.6    Crabtree, J.7    Sperandio, V.8    Ravel, J.9
  • 13
    • 33748681096 scopus 로고    scopus 로고
    • Microbial genomes and vaccine design: refinements to the classical reverse vaccinology approach
    • Mora M., Donati C., Medini D., Covacci A., and Rappuoli R. Microbial genomes and vaccine design: refinements to the classical reverse vaccinology approach. Curr Opin Microbiol 9 (2006) 532-536
    • (2006) Curr Opin Microbiol , vol.9 , pp. 532-536
    • Mora, M.1    Donati, C.2    Medini, D.3    Covacci, A.4    Rappuoli, R.5
  • 14
    • 33845887188 scopus 로고    scopus 로고
    • Towards a universal group B Streptococcus vaccine using multistrain genome analysis
    • Tettelin H., Medini D., Donati C., and Masignani V. Towards a universal group B Streptococcus vaccine using multistrain genome analysis. Expert Rev Vaccines 5 (2006) 687-694
    • (2006) Expert Rev Vaccines , vol.5 , pp. 687-694
    • Tettelin, H.1    Medini, D.2    Donati, C.3    Masignani, V.4
  • 15
    • 36549020646 scopus 로고    scopus 로고
    • Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome
    • Application of the pan-genome analysis.
    • Hiller N.L., Janto B., Hogg J.S., Boissy R., Yu S., Powell E., Keefe R., Ehrlich N.E., Shen K., Hayes J., et al. Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome. J Bacteriol 189 (2007) 8186-8195. Application of the pan-genome analysis.
    • (2007) J Bacteriol , vol.189 , pp. 8186-8195
    • Hiller, N.L.1    Janto, B.2    Hogg, J.S.3    Boissy, R.4    Yu, S.5    Powell, E.6    Keefe, R.7    Ehrlich, N.E.8    Shen, K.9    Hayes, J.10
  • 17
    • 24744469980 scopus 로고    scopus 로고
    • Power laws, Pareto distributions and Zipf's law
    • Newman M.E.J. Power laws, Pareto distributions and Zipf's law. Contemp Phys 46 (2005) 323-351
    • (2005) Contemp Phys , vol.46 , pp. 323-351
    • Newman, M.E.J.1
  • 18
    • 55049106839 scopus 로고    scopus 로고
    • Clauset A, Shalizi CR, Newman MEJ: Power-law distributions in empirical data. arXiv:0706.1062v1; 2007.
    • Clauset A, Shalizi CR, Newman MEJ: Power-law distributions in empirical data. arXiv:0706.1062v1; 2007.
  • 19
    • 27444438599 scopus 로고    scopus 로고
    • The microbial pan-genome
    • A review of the application of the first pan-genome model (exponential regression) and its impact on comparative genomics, bacterial populations, and the definition of species.
    • Medini D., Donati C., Tettelin H., Masignani V., and Rappuoli R. The microbial pan-genome. Curr Opin Genet Dev 15 (2005) 589-594. A review of the application of the first pan-genome model (exponential regression) and its impact on comparative genomics, bacterial populations, and the definition of species.
    • (2005) Curr Opin Genet Dev , vol.15 , pp. 589-594
    • Medini, D.1    Donati, C.2    Tettelin, H.3    Masignani, V.4    Rappuoli, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.